[{"scopus_import":"1","isi":1,"month":"11","author":[{"first_name":"Yutaka","full_name":"Matsubayashi, Yutaka","last_name":"Matsubayashi"},{"first_name":"Adam","full_name":"Louani, Adam","last_name":"Louani"},{"first_name":"Anca","full_name":"Dragu, Anca","last_name":"Dragu"},{"last_name":"Sanchez Sanchez","full_name":"Sanchez Sanchez, Besaiz","first_name":"Besaiz"},{"full_name":"Serna Morales, Eduardo","last_name":"Serna Morales","first_name":"Eduardo"},{"first_name":"Lawrence","full_name":"Yolland, Lawrence","last_name":"Yolland"},{"orcid":"0000-0002-1819-198X","first_name":"Attila","full_name":"György, Attila","last_name":"György","id":"3BCEDBE0-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Gema","full_name":"Vizcay, Gema","last_name":"Vizcay"},{"last_name":"Fleck","full_name":"Fleck, Roland","first_name":"Roland"},{"first_name":"John","full_name":"Heddleston, John","last_name":"Heddleston"},{"last_name":"Chew","full_name":"Chew, Teng","first_name":"Teng"},{"id":"3D224B9E-F248-11E8-B48F-1D18A9856A87","last_name":"Siekhaus","full_name":"Siekhaus, Daria E","first_name":"Daria E","orcid":"0000-0001-8323-8353"},{"last_name":"Stramer","full_name":"Stramer, Brian","first_name":"Brian"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa_version":"Published Version","type":"journal_article","quality_controlled":"1","ddc":["570","576"],"publisher":"Cell Press","file_date_updated":"2020-07-14T12:47:59Z","_id":"751","oa":1,"language":[{"iso":"eng"}],"external_id":{"isi":["000415815800031"]},"abstract":[{"text":"The basement membrane (BM) is a thin layer of extracellular matrix (ECM) beneath nearly all epithelial cell types that is critical for cellular and tissue function. It is composed of numerous components conserved among all bilaterians [1]; however, it is unknown how all of these components are generated and subsequently constructed to form a fully mature BM in the living animal. Although BM formation is thought to simply involve a process of self-assembly [2], this concept suffers from a number of logistical issues when considering its construction in vivo. First, incorporation of BM components appears to be hierarchical [3-5], yet it is unclear whether their production during embryogenesis must also be regulated in a temporal fashion. Second, many BM proteins are produced not only by the cells residing on the BM but also by surrounding cell types [6-9], and it is unclear how large, possibly insoluble protein complexes [10] are delivered into the matrix. Here we exploit our ability to live image and genetically dissect de novo BM formation during Drosophila development. This reveals that there is a temporal hierarchy of BM protein production that is essential for proper component incorporation. Furthermore, we show that BM components require secretion by migrating macrophages (hemocytes) during their developmental dispersal, which is critical for embryogenesis. Indeed, hemocyte migration is essential to deliver a subset of ECM components evenly throughout the embryo. This reveals that de novo BM construction requires a combination of both production and distribution logistics allowing for the timely delivery of core components.","lang":"eng"}],"license":"https://creativecommons.org/licenses/by/4.0/","title":"A moving source of matrix components is essential for De Novo basement membrane formation","issue":"22","citation":{"ama":"Matsubayashi Y, Louani A, Dragu A, et al. A moving source of matrix components is essential for De Novo basement membrane formation. <i>Current Biology</i>. 2017;27(22):3526-3534e.4. doi:<a href=\"https://doi.org/10.1016/j.cub.2017.10.001\">10.1016/j.cub.2017.10.001</a>","short":"Y. Matsubayashi, A. Louani, A. Dragu, B. Sanchez Sanchez, E. Serna Morales, L. Yolland, A. György, G. Vizcay, R. Fleck, J. Heddleston, T. Chew, D.E. Siekhaus, B. Stramer, Current Biology 27 (2017) 3526–3534e.4.","mla":"Matsubayashi, Yutaka, et al. “A Moving Source of Matrix Components Is Essential for De Novo Basement Membrane Formation.” <i>Current Biology</i>, vol. 27, no. 22, Cell Press, 2017, p. 3526–3534e.4, doi:<a href=\"https://doi.org/10.1016/j.cub.2017.10.001\">10.1016/j.cub.2017.10.001</a>.","ieee":"Y. Matsubayashi <i>et al.</i>, “A moving source of matrix components is essential for De Novo basement membrane formation,” <i>Current Biology</i>, vol. 27, no. 22. Cell Press, p. 3526–3534e.4, 2017.","ista":"Matsubayashi Y, Louani A, Dragu A, Sanchez Sanchez B, Serna Morales E, Yolland L, György A, Vizcay G, Fleck R, Heddleston J, Chew T, Siekhaus DE, Stramer B. 2017. A moving source of matrix components is essential for De Novo basement membrane formation. Current Biology. 27(22), 3526–3534e.4.","apa":"Matsubayashi, Y., Louani, A., Dragu, A., Sanchez Sanchez, B., Serna Morales, E., Yolland, L., … Stramer, B. (2017). A moving source of matrix components is essential for De Novo basement membrane formation. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2017.10.001\">https://doi.org/10.1016/j.cub.2017.10.001</a>","chicago":"Matsubayashi, Yutaka, Adam Louani, Anca Dragu, Besaiz Sanchez Sanchez, Eduardo Serna Morales, Lawrence Yolland, Attila György, et al. “A Moving Source of Matrix Components Is Essential for De Novo Basement Membrane Formation.” <i>Current Biology</i>. Cell Press, 2017. <a href=\"https://doi.org/10.1016/j.cub.2017.10.001\">https://doi.org/10.1016/j.cub.2017.10.001</a>."},"department":[{"_id":"DaSi"}],"article_processing_charge":"No","page":"3526 - 3534e.4","pubrep_id":"875","day":"09","date_published":"2017-11-09T00:00:00Z","has_accepted_license":"1","date_updated":"2023-09-27T12:25:31Z","publication":"Current Biology","publist_id":"6905","date_created":"2018-12-11T11:48:18Z","volume":27,"doi":"10.1016/j.cub.2017.10.001","file":[{"access_level":"open_access","date_updated":"2020-07-14T12:47:59Z","content_type":"application/pdf","checksum":"264cf6c6c3551486ba5ea786850e000a","file_size":4770657,"creator":"system","relation":"main_file","date_created":"2018-12-12T10:09:45Z","file_name":"IST-2017-875-v1+1_1-s2.0-S0960982217312691-main.pdf","file_id":"4770"}],"publication_status":"published","status":"public","publication_identifier":{"issn":["09609822"]},"intvolume":"        27","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"year":"2017"},{"publisher":"Mendeley Data","date_created":"2021-08-09T13:18:55Z","_id":"9842","doi":"10.17632/nw68fxzjpm.1","main_file_link":[{"url":"https://doi.org/10.17632/nw68fxzjpm.1","open_access":"1"}],"oa":1,"abstract":[{"lang":"eng","text":"Mathematica notebooks used to generate figures."}],"status":"public","title":"Data for: Establishment in a new habitat by polygenic adaptation","year":"2017","citation":{"chicago":"Etheridge, Alison, and Nicholas H Barton. “Data for: Establishment in a New Habitat by Polygenic Adaptation.” Mendeley Data, 2017. <a href=\"https://doi.org/10.17632/nw68fxzjpm.1\">https://doi.org/10.17632/nw68fxzjpm.1</a>.","apa":"Etheridge, A., &#38; Barton, N. H. (2017). Data for: Establishment in a new habitat by polygenic adaptation. Mendeley Data. <a href=\"https://doi.org/10.17632/nw68fxzjpm.1\">https://doi.org/10.17632/nw68fxzjpm.1</a>","ieee":"A. Etheridge and N. H. Barton, “Data for: Establishment in a new habitat by polygenic adaptation.” Mendeley Data, 2017.","ista":"Etheridge A, Barton NH. 2017. Data for: Establishment in a new habitat by polygenic adaptation, Mendeley Data, <a href=\"https://doi.org/10.17632/nw68fxzjpm.1\">10.17632/nw68fxzjpm.1</a>.","short":"A. Etheridge, N.H. Barton, (2017).","mla":"Etheridge, Alison, and Nicholas H. Barton. <i>Data for: Establishment in a New Habitat by Polygenic Adaptation</i>. Mendeley Data, 2017, doi:<a href=\"https://doi.org/10.17632/nw68fxzjpm.1\">10.17632/nw68fxzjpm.1</a>.","ama":"Etheridge A, Barton NH. Data for: Establishment in a new habitat by polygenic adaptation. 2017. doi:<a href=\"https://doi.org/10.17632/nw68fxzjpm.1\">10.17632/nw68fxzjpm.1</a>"},"department":[{"_id":"NiBa"}],"article_processing_charge":"No","month":"12","author":[{"full_name":"Etheridge, Alison","last_name":"Etheridge","first_name":"Alison"},{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","full_name":"Barton, Nicholas H","first_name":"Nicholas H","orcid":"0000-0002-8548-5240"}],"day":"29","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","oa_version":"Published Version","date_published":"2017-12-29T00:00:00Z","related_material":{"record":[{"id":"564","status":"public","relation":"used_in_publication"}]},"date_updated":"2025-04-15T07:11:04Z","type":"research_data_reference"},{"publisher":"Public Library of Science","date_created":"2021-08-09T13:27:16Z","doi":"10.1371/journal.pgen.1007122.s018","_id":"9844","status":"public","title":"Source data for figures and tables","year":"2017","citation":{"ama":"Nikolic N, Schreiber F, Dal Co A, et al. Source data for figures and tables. 2017. doi:<a href=\"https://doi.org/10.1371/journal.pgen.1007122.s018\">10.1371/journal.pgen.1007122.s018</a>","mla":"Nikolic, Nela, et al. <i>Source Data for Figures and Tables</i>. Public Library of Science, 2017, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1007122.s018\">10.1371/journal.pgen.1007122.s018</a>.","short":"N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).","ieee":"N. Nikolic <i>et al.</i>, “Source data for figures and tables.” Public Library of Science, 2017.","ista":"Nikolic N, Schreiber F, Dal Co A, Kiviet D, Bergmiller T, Littmann S, Kuypers M, Ackermann M. 2017. Source data for figures and tables, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s018\">10.1371/journal.pgen.1007122.s018</a>.","chicago":"Nikolic, Nela, Frank Schreiber, Alma Dal Co, Daniel Kiviet, Tobias Bergmiller, Sten Littmann, Marcel Kuypers, and Martin Ackermann. “Source Data for Figures and Tables.” Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s018\">https://doi.org/10.1371/journal.pgen.1007122.s018</a>.","apa":"Nikolic, N., Schreiber, F., Dal Co, A., Kiviet, D., Bergmiller, T., Littmann, S., … Ackermann, M. (2017). Source data for figures and tables. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s018\">https://doi.org/10.1371/journal.pgen.1007122.s018</a>"},"department":[{"_id":"CaGu"}],"month":"12","article_processing_charge":"No","author":[{"last_name":"Nikolic","full_name":"Nikolic, Nela","id":"42D9CABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9068-6090","first_name":"Nela"},{"full_name":"Schreiber, Frank","last_name":"Schreiber","first_name":"Frank"},{"first_name":"Alma","last_name":"Dal Co","full_name":"Dal Co, Alma"},{"full_name":"Kiviet, Daniel","last_name":"Kiviet","first_name":"Daniel"},{"orcid":"0000-0001-5396-4346","first_name":"Tobias","last_name":"Bergmiller","full_name":"Bergmiller, Tobias","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Littmann","full_name":"Littmann, Sten","first_name":"Sten"},{"first_name":"Marcel","full_name":"Kuypers, Marcel","last_name":"Kuypers"},{"full_name":"Ackermann, Martin","last_name":"Ackermann","first_name":"Martin"}],"day":"18","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","oa_version":"Published Version","date_published":"2017-12-18T00:00:00Z","related_material":{"record":[{"relation":"used_in_publication","id":"541","status":"public"}]},"date_updated":"2025-09-18T09:42:08Z","type":"research_data_reference"},{"article_processing_charge":"No","month":"12","author":[{"id":"42D9CABC-F248-11E8-B48F-1D18A9856A87","full_name":"Nikolic, Nela","last_name":"Nikolic","first_name":"Nela","orcid":"0000-0001-9068-6090"},{"first_name":"Frank","last_name":"Schreiber","full_name":"Schreiber, Frank"},{"last_name":"Dal Co","full_name":"Dal Co, Alma","first_name":"Alma"},{"first_name":"Daniel","full_name":"Kiviet, Daniel","last_name":"Kiviet"},{"orcid":"0000-0001-5396-4346","first_name":"Tobias","last_name":"Bergmiller","full_name":"Bergmiller, Tobias","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Sten","full_name":"Littmann, Sten","last_name":"Littmann"},{"full_name":"Kuypers, Marcel","last_name":"Kuypers","first_name":"Marcel"},{"first_name":"Martin","full_name":"Ackermann, Martin","last_name":"Ackermann"}],"citation":{"short":"N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).","mla":"Nikolic, Nela, et al. <i>Mathematical Model</i>. Public Library of Science, 2017, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1007122.s017\">10.1371/journal.pgen.1007122.s017</a>.","ama":"Nikolic N, Schreiber F, Dal Co A, et al. Mathematical model. 2017. doi:<a href=\"https://doi.org/10.1371/journal.pgen.1007122.s017\">10.1371/journal.pgen.1007122.s017</a>","chicago":"Nikolic, Nela, Frank Schreiber, Alma Dal Co, Daniel Kiviet, Tobias Bergmiller, Sten Littmann, Marcel Kuypers, and Martin Ackermann. “Mathematical Model.” Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s017\">https://doi.org/10.1371/journal.pgen.1007122.s017</a>.","apa":"Nikolic, N., Schreiber, F., Dal Co, A., Kiviet, D., Bergmiller, T., Littmann, S., … Ackermann, M. (2017). Mathematical model. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s017\">https://doi.org/10.1371/journal.pgen.1007122.s017</a>","ista":"Nikolic N, Schreiber F, Dal Co A, Kiviet D, Bergmiller T, Littmann S, Kuypers M, Ackermann M. 2017. Mathematical model, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s017\">10.1371/journal.pgen.1007122.s017</a>.","ieee":"N. Nikolic <i>et al.</i>, “Mathematical model.” Public Library of Science, 2017."},"department":[{"_id":"CaGu"}],"related_material":{"record":[{"status":"public","id":"541","relation":"used_in_publication"}]},"date_updated":"2025-09-18T09:42:08Z","type":"research_data_reference","day":"18","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","oa_version":"None","date_published":"2017-12-18T00:00:00Z","_id":"9845","doi":"10.1371/journal.pgen.1007122.s017","publisher":"Public Library of Science","date_created":"2021-08-09T13:31:51Z","status":"public","title":"Mathematical model","year":"2017","abstract":[{"text":"Estimates of 13 C-arabinose and 2 H-glucose uptake from the fractions of heavy isotopes measured\tin single cells","lang":"eng"}]},{"citation":{"ieee":"N. Nikolic <i>et al.</i>, “Supplementary methods.” Public Library of Science, 2017.","ista":"Nikolic N, Schreiber F, Dal Co A, Kiviet D, Bergmiller T, Littmann S, Kuypers M, Ackermann M. 2017. Supplementary methods, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s016\">10.1371/journal.pgen.1007122.s016</a>.","chicago":"Nikolic, Nela, Frank Schreiber, Alma Dal Co, Daniel Kiviet, Tobias Bergmiller, Sten Littmann, Marcel Kuypers, and Martin Ackermann. “Supplementary Methods.” Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s016\">https://doi.org/10.1371/journal.pgen.1007122.s016</a>.","apa":"Nikolic, N., Schreiber, F., Dal Co, A., Kiviet, D., Bergmiller, T., Littmann, S., … Ackermann, M. (2017). Supplementary methods. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1007122.s016\">https://doi.org/10.1371/journal.pgen.1007122.s016</a>","ama":"Nikolic N, Schreiber F, Dal Co A, et al. Supplementary methods. 2017. doi:<a href=\"https://doi.org/10.1371/journal.pgen.1007122.s016\">10.1371/journal.pgen.1007122.s016</a>","mla":"Nikolic, Nela, et al. <i>Supplementary Methods</i>. Public Library of Science, 2017, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1007122.s016\">10.1371/journal.pgen.1007122.s016</a>.","short":"N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017)."},"department":[{"_id":"CaGu"}],"article_processing_charge":"No","month":"12","author":[{"last_name":"Nikolic","full_name":"Nikolic, Nela","id":"42D9CABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9068-6090","first_name":"Nela"},{"first_name":"Frank","full_name":"Schreiber, Frank","last_name":"Schreiber"},{"last_name":"Dal Co","full_name":"Dal Co, Alma","first_name":"Alma"},{"full_name":"Kiviet, Daniel","last_name":"Kiviet","first_name":"Daniel"},{"orcid":"0000-0001-5396-4346","first_name":"Tobias","last_name":"Bergmiller","full_name":"Bergmiller, Tobias","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Sten","full_name":"Littmann, Sten","last_name":"Littmann"},{"first_name":"Marcel","full_name":"Kuypers, Marcel","last_name":"Kuypers"},{"full_name":"Ackermann, Martin","last_name":"Ackermann","first_name":"Martin"}],"date_published":"2017-12-18T00:00:00Z","oa_version":"Published Version","day":"18","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","type":"research_data_reference","date_updated":"2025-09-18T09:42:08Z","related_material":{"record":[{"id":"541","status":"public","relation":"used_in_publication"}]},"date_created":"2021-08-09T13:35:17Z","publisher":"Public Library of Science","_id":"9846","doi":"10.1371/journal.pgen.1007122.s016","year":"2017","status":"public","title":"Supplementary methods"},{"abstract":[{"text":"information on culture conditions, phage mutagenesis, verification and lysate preparation; Raw data","lang":"eng"}],"corr_author":"1","year":"2017","title":"Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification","status":"public","date_created":"2021-08-09T13:54:38Z","publisher":"The Royal Society","oa":1,"doi":"10.6084/m9.figshare.5633917.v1","_id":"9847","main_file_link":[{"open_access":"1","url":"https://doi.org/10.6084/m9.figshare.5633917.v1"}],"date_published":"2017-11-27T00:00:00Z","oa_version":"Published Version","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","day":"27","date_updated":"2025-09-11T07:42:21Z","type":"research_data_reference","related_material":{"record":[{"status":"public","id":"561","relation":"used_in_publication"}]},"department":[{"_id":"CaGu"}],"citation":{"mla":"Pleska, Maros, and Calin C. Guet. <i>Supplementary Materials and Methods; Full Data Set from Effects of Mutations in Phage Restriction Sites during Escape from Restriction–Modification</i>. The Royal Society, 2017, doi:<a href=\"https://doi.org/10.6084/m9.figshare.5633917.v1\">10.6084/m9.figshare.5633917.v1</a>.","short":"M. Pleska, C.C. Guet, (2017).","ama":"Pleska M, Guet CC. Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification. 2017. doi:<a href=\"https://doi.org/10.6084/m9.figshare.5633917.v1\">10.6084/m9.figshare.5633917.v1</a>","chicago":"Pleska, Maros, and Calin C Guet. “Supplementary Materials and Methods; Full Data Set from Effects of Mutations in Phage Restriction Sites during Escape from Restriction–Modification.” The Royal Society, 2017. <a href=\"https://doi.org/10.6084/m9.figshare.5633917.v1\">https://doi.org/10.6084/m9.figshare.5633917.v1</a>.","apa":"Pleska, M., &#38; Guet, C. C. (2017). Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification. The Royal Society. <a href=\"https://doi.org/10.6084/m9.figshare.5633917.v1\">https://doi.org/10.6084/m9.figshare.5633917.v1</a>","ista":"Pleska M, Guet CC. 2017. Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification, The Royal Society, <a href=\"https://doi.org/10.6084/m9.figshare.5633917.v1\">10.6084/m9.figshare.5633917.v1</a>.","ieee":"M. Pleska and C. C. Guet, “Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification.” The Royal Society, 2017."},"author":[{"orcid":"0000-0001-7460-7479","first_name":"Maros","last_name":"Pleska","full_name":"Pleska, Maros","id":"4569785E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Guet, Calin C","last_name":"Guet","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6220-2052","first_name":"Calin C"}],"month":"11","article_processing_charge":"No"},{"abstract":[{"text":"This text provides additional information about the model, a derivation of the analytic results in Eq (4), and details about simulations of an additional parameter set.","lang":"eng"}],"title":"Modelling and simulation details","status":"public","year":"2017","publisher":"Public Library of Science","date_created":"2021-08-09T14:02:34Z","_id":"9849","doi":"10.1371/journal.pcbi.1005609.s001","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","day":"18","date_published":"2017-07-18T00:00:00Z","oa_version":"Published Version","related_material":{"record":[{"status":"public","id":"696","relation":"used_in_publication"}]},"date_updated":"2025-09-10T11:11:52Z","type":"research_data_reference","department":[{"_id":"ToBo"},{"_id":"NiBa"},{"_id":"CaGu"}],"citation":{"ista":"Lukacisinova M, Novak S, Paixao T. 2017. Modelling and simulation details, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pcbi.1005609.s001\">10.1371/journal.pcbi.1005609.s001</a>.","ieee":"M. Lukacisinova, S. Novak, and T. Paixao, “Modelling and simulation details.” Public Library of Science, 2017.","apa":"Lukacisinova, M., Novak, S., &#38; Paixao, T. (2017). Modelling and simulation details. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pcbi.1005609.s001\">https://doi.org/10.1371/journal.pcbi.1005609.s001</a>","chicago":"Lukacisinova, Marta, Sebastian Novak, and Tiago Paixao. “Modelling and Simulation Details.” Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pcbi.1005609.s001\">https://doi.org/10.1371/journal.pcbi.1005609.s001</a>.","ama":"Lukacisinova M, Novak S, Paixao T. Modelling and simulation details. 2017. doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1005609.s001\">10.1371/journal.pcbi.1005609.s001</a>","short":"M. Lukacisinova, S. 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Supporting information concerning observed wMel frequencies and analyses of habitat variables, Public Library of Science , <a href=\"https://doi.org/10.1371/journal.pbio.2001894.s015\">10.1371/journal.pbio.2001894.s015</a>."},"author":[{"last_name":"Schmidt","full_name":"Schmidt, Tom","first_name":"Tom"},{"last_name":"Barton","full_name":"Barton, Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240","first_name":"Nicholas H"},{"full_name":"Rasic, Gordana","last_name":"Rasic","first_name":"Gordana"},{"last_name":"Turley","full_name":"Turley, Andrew","first_name":"Andrew"},{"full_name":"Montgomery, Brian","last_name":"Montgomery","first_name":"Brian"},{"last_name":"Iturbe Ormaetxe","full_name":"Iturbe Ormaetxe, Inaki","first_name":"Inaki"},{"full_name":"Cook, Peter","last_name":"Cook","first_name":"Peter"},{"first_name":"Peter","last_name":"Ryan","full_name":"Ryan, Peter"},{"first_name":"Scott","last_name":"Ritchie","full_name":"Ritchie, Scott"},{"full_name":"Hoffmann, Ary","last_name":"Hoffmann","first_name":"Ary"},{"first_name":"Scott","full_name":"O’Neill, Scott","last_name":"O’Neill"},{"first_name":"Michael","last_name":"Turelli","full_name":"Turelli, Michael"}],"article_processing_charge":"No","month":"05","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","day":"30","oa_version":"Published Version","date_published":"2017-05-30T00:00:00Z","related_material":{"record":[{"id":"951","status":"public","relation":"used_in_publication"}]},"date_updated":"2025-07-10T12:01:48Z","type":"research_data_reference"},{"year":"2017","title":"Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics","status":"public","doi":"10.1371/journal.pbio.2001894.s016","_id":"9858","date_created":"2021-08-10T07:47:07Z","publisher":"Public Library of Science","type":"research_data_reference","date_updated":"2025-07-10T12:01:48Z","related_material":{"record":[{"id":"951","status":"public","relation":"used_in_publication"}]},"oa_version":"Published Version","date_published":"2017-05-30T00:00:00Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","day":"30","author":[{"first_name":"Tom","full_name":"Schmidt, Tom","last_name":"Schmidt"},{"last_name":"Barton","full_name":"Barton, Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240","first_name":"Nicholas H"},{"full_name":"Rasic, Gordana","last_name":"Rasic","first_name":"Gordana"},{"full_name":"Turley, Andrew","last_name":"Turley","first_name":"Andrew"},{"first_name":"Brian","full_name":"Montgomery, Brian","last_name":"Montgomery"},{"last_name":"Iturbe Ormaetxe","full_name":"Iturbe Ormaetxe, Inaki","first_name":"Inaki"},{"first_name":"Peter","last_name":"Cook","full_name":"Cook, Peter"},{"first_name":"Peter","last_name":"Ryan","full_name":"Ryan, Peter"},{"first_name":"Scott","full_name":"Ritchie, Scott","last_name":"Ritchie"},{"full_name":"Hoffmann, Ary","last_name":"Hoffmann","first_name":"Ary"},{"full_name":"O’Neill, Scott","last_name":"O’Neill","first_name":"Scott"},{"full_name":"Turelli, Michael","last_name":"Turelli","first_name":"Michael"}],"article_processing_charge":"No","month":"05","department":[{"_id":"NiBa"}],"citation":{"mla":"Schmidt, Tom, et al. <i>Excel File with Data on Mosquito Densities, Wolbachia Infection Status and Housing Characteristics</i>. Public Library of Science, 2017, doi:<a href=\"https://doi.org/10.1371/journal.pbio.2001894.s016\">10.1371/journal.pbio.2001894.s016</a>.","short":"T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).","ama":"Schmidt T, Barton NH, Rasic G, et al. Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics. 2017. doi:<a href=\"https://doi.org/10.1371/journal.pbio.2001894.s016\">10.1371/journal.pbio.2001894.s016</a>","apa":"Schmidt, T., Barton, N. H., Rasic, G., Turley, A., Montgomery, B., Iturbe Ormaetxe, I., … Turelli, M. (2017). Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.2001894.s016\">https://doi.org/10.1371/journal.pbio.2001894.s016</a>","chicago":"Schmidt, Tom, Nicholas H Barton, Gordana Rasic, Andrew Turley, Brian Montgomery, Inaki Iturbe Ormaetxe, Peter Cook, et al. “Excel File with Data on Mosquito Densities, Wolbachia Infection Status and Housing Characteristics.” Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pbio.2001894.s016\">https://doi.org/10.1371/journal.pbio.2001894.s016</a>.","ista":"Schmidt T, Barton NH, Rasic G, Turley A, Montgomery B, Iturbe Ormaetxe I, Cook P, Ryan P, Ritchie S, Hoffmann A, O’Neill S, Turelli M. 2017. Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pbio.2001894.s016\">10.1371/journal.pbio.2001894.s016</a>.","ieee":"T. Schmidt <i>et al.</i>, “Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics.” Public Library of Science, 2017."}},{"oa":1,"main_file_link":[{"url":"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1","open_access":"1"}],"_id":"9859","doi":"10.6084/m9.figshare.c.3756974_d1.v1","publisher":"Springer Nature","date_created":"2021-08-10T07:59:02Z","title":"Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae","status":"public","year":"2017","abstract":[{"lang":"eng","text":"Lists of all differentially expressed genes in the different priming-challenge treatments (compared to the fully naïve control; xlsx file). Relevant columns include the following: sample_1 and sample_2 – treatment groups being compared; Normalised FPKM sample_1 and sample_2 – FPKM of samples being compared; log2(fold_change) – log2(FPKM sample 2/FPKM sample 1), i.e. negative means sample 1 upregulated compared with sample 2, positive means sample 2 upregulated compared with sample 1; cuffdiff test_statistic – test statistic of differential expression test; p_value – p-value of differential expression test; q_value (FDR correction) – adjusted P-value of differential expression test. (XLSX 598 kb)"}],"author":[{"first_name":"Jenny","full_name":"Greenwood, Jenny","last_name":"Greenwood"},{"orcid":"0000-0002-8214-4758","first_name":"Barbara","last_name":"Milutinovic","full_name":"Milutinovic, Barbara","id":"2CDC32B8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Peuß, Robert","last_name":"Peuß","first_name":"Robert"},{"first_name":"Sarah","full_name":"Behrens, Sarah","last_name":"Behrens"},{"first_name":"Daniela","last_name":"Essar","full_name":"Essar, Daniela"},{"first_name":"Philip","last_name":"Rosenstiel","full_name":"Rosenstiel, Philip"},{"full_name":"Schulenburg, Hinrich","last_name":"Schulenburg","first_name":"Hinrich"},{"first_name":"Joachim","last_name":"Kurtz","full_name":"Kurtz, Joachim"}],"article_processing_charge":"No","month":"04","department":[{"_id":"SyCr"}],"citation":{"ama":"Greenwood J, Milutinovic B, Peuß R, et al. Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae. 2017. doi:<a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1\">10.6084/m9.figshare.c.3756974_d1.v1</a>","short":"J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, (2017).","mla":"Greenwood, Jenny, et al. <i>Additional File 1: Table S1. of Oral Immune Priming with Bacillus Thuringiensis Induces a Shift in the Gene Expression of Tribolium Castaneum Larvae</i>. Springer Nature, 2017, doi:<a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1\">10.6084/m9.figshare.c.3756974_d1.v1</a>.","ieee":"J. Greenwood <i>et al.</i>, “Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae.” Springer Nature, 2017.","ista":"Greenwood J, Milutinovic B, Peuß R, Behrens S, Essar D, Rosenstiel P, Schulenburg H, Kurtz J. 2017. Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae, Springer Nature, <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1\">10.6084/m9.figshare.c.3756974_d1.v1</a>.","chicago":"Greenwood, Jenny, Barbara Milutinovic, Robert Peuß, Sarah Behrens, Daniela Essar, Philip Rosenstiel, Hinrich Schulenburg, and Joachim Kurtz. “Additional File 1: Table S1. of Oral Immune Priming with Bacillus Thuringiensis Induces a Shift in the Gene Expression of Tribolium Castaneum Larvae.” Springer Nature, 2017. <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1\">https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1</a>.","apa":"Greenwood, J., Milutinovic, B., Peuß, R., Behrens, S., Essar, D., Rosenstiel, P., … Kurtz, J. (2017). Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae. Springer Nature. <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1\">https://doi.org/10.6084/m9.figshare.c.3756974_d1.v1</a>"},"related_material":{"record":[{"relation":"used_in_publication","id":"1006","status":"public"}]},"date_updated":"2025-07-10T11:49:39Z","type":"research_data_reference","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","day":"26","oa_version":"Published Version","date_published":"2017-04-26T00:00:00Z"},{"year":"2017","status":"public","title":"Additional file 5: Table S3. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae","date_created":"2021-08-10T08:07:12Z","publisher":"Springer Nature","_id":"9860","main_file_link":[{"url":"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1","open_access":"1"}],"doi":"10.6084/m9.figshare.c.3756974_d5.v1","oa":1,"date_published":"2017-04-26T00:00:00Z","oa_version":"Published Version","day":"26","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_updated":"2025-07-10T11:49:39Z","type":"research_data_reference","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"1006"}]},"citation":{"apa":"Greenwood, J., Milutinovic, B., Peuß, R., Behrens, S., Essar, D., Rosenstiel, P., … Kurtz, J. (2017). Additional file 5: Table S3. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae. Springer Nature. <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1\">https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1</a>","chicago":"Greenwood, Jenny, Barbara Milutinovic, Robert Peuß, Sarah Behrens, Daniela Essar, Philip Rosenstiel, Hinrich Schulenburg, and Joachim Kurtz. “Additional File 5: Table S3. of Oral Immune Priming with Bacillus Thuringiensis Induces a Shift in the Gene Expression of Tribolium Castaneum Larvae.” Springer Nature, 2017. <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1\">https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1</a>.","ista":"Greenwood J, Milutinovic B, Peuß R, Behrens S, Essar D, Rosenstiel P, Schulenburg H, Kurtz J. 2017. Additional file 5: Table S3. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae, Springer Nature, <a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1\">10.6084/m9.figshare.c.3756974_d5.v1</a>.","ieee":"J. Greenwood <i>et al.</i>, “Additional file 5: Table S3. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae.” Springer Nature, 2017.","mla":"Greenwood, Jenny, et al. <i>Additional File 5: Table S3. of Oral Immune Priming with Bacillus Thuringiensis Induces a Shift in the Gene Expression of Tribolium Castaneum Larvae</i>. Springer Nature, 2017, doi:<a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1\">10.6084/m9.figshare.c.3756974_d5.v1</a>.","short":"J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, (2017).","ama":"Greenwood J, Milutinovic B, Peuß R, et al. Additional file 5: Table S3. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae. 2017. doi:<a href=\"https://doi.org/10.6084/m9.figshare.c.3756974_d5.v1\">10.6084/m9.figshare.c.3756974_d5.v1</a>"},"department":[{"_id":"SyCr"}],"month":"04","article_processing_charge":"No","author":[{"first_name":"Jenny","last_name":"Greenwood","full_name":"Greenwood, Jenny"},{"first_name":"Barbara","orcid":"0000-0002-8214-4758","id":"2CDC32B8-F248-11E8-B48F-1D18A9856A87","full_name":"Milutinovic, Barbara","last_name":"Milutinovic"},{"first_name":"Robert","last_name":"Peuß","full_name":"Peuß, Robert"},{"first_name":"Sarah","last_name":"Behrens","full_name":"Behrens, Sarah"},{"first_name":"Daniela","full_name":"Essar, Daniela","last_name":"Essar"},{"first_name":"Philip","full_name":"Rosenstiel, Philip","last_name":"Rosenstiel"},{"full_name":"Schulenburg, Hinrich","last_name":"Schulenburg","first_name":"Hinrich"},{"first_name":"Joachim","last_name":"Kurtz","full_name":"Kurtz, Joachim"}]},{"date_published":"2017-02-14T00:00:00Z","oa_version":"Published Version","day":"14","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_updated":"2025-07-10T11:49:45Z","type":"research_data_reference","related_material":{"record":[{"relation":"used_in_publication","id":"1019","status":"public"}]},"citation":{"chicago":"Argyridou, Eliza, Ann K Huylmans, Annabella Königer, and John Parsch. “Data from: X-Linkage Is Not a General Inhibitor of Tissue-Specific Gene Expression in Drosophila Melanogaster.” Dryad, 2017. <a href=\"https://doi.org/10.5061/dryad.02f6r\">https://doi.org/10.5061/dryad.02f6r</a>.","apa":"Argyridou, E., Huylmans, A. K., Königer, A., &#38; Parsch, J. (2017). Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster. Dryad. <a href=\"https://doi.org/10.5061/dryad.02f6r\">https://doi.org/10.5061/dryad.02f6r</a>","ieee":"E. Argyridou, A. K. Huylmans, A. Königer, and J. Parsch, “Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster.” Dryad, 2017.","ista":"Argyridou E, Huylmans AK, Königer A, Parsch J. 2017. Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster, Dryad, <a href=\"https://doi.org/10.5061/dryad.02f6r\">10.5061/dryad.02f6r</a>.","short":"E. Argyridou, A.K. Huylmans, A. Königer, J. Parsch, (2017).","mla":"Argyridou, Eliza, et al. <i>Data from: X-Linkage Is Not a General Inhibitor of Tissue-Specific Gene Expression in Drosophila Melanogaster</i>. Dryad, 2017, doi:<a href=\"https://doi.org/10.5061/dryad.02f6r\">10.5061/dryad.02f6r</a>.","ama":"Argyridou E, Huylmans AK, Königer A, Parsch J. Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster. 2017. doi:<a href=\"https://doi.org/10.5061/dryad.02f6r\">10.5061/dryad.02f6r</a>"},"department":[{"_id":"BeVi"}],"month":"02","article_processing_charge":"No","author":[{"first_name":"Eliza","last_name":"Argyridou","full_name":"Argyridou, Eliza"},{"orcid":"0000-0001-8871-4961","first_name":"Ann K","full_name":"Huylmans, Ann K","last_name":"Huylmans","id":"4C0A3874-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Annabella","last_name":"Königer","full_name":"Königer, Annabella"},{"first_name":"John","full_name":"Parsch, John","last_name":"Parsch"}],"abstract":[{"lang":"eng","text":"As a consequence of its difference in copy number between males and females, the X chromosome is subject to unique evolutionary forces and gene regulatory mechanisms. Previous studies of Drosophila melanogaster have shown that the expression of X-linked, testis-specific reporter genes is suppressed in the male germline. However, it is not known whether this phenomenon is restricted to testis-expressed genes or if it is a more general property of genes with tissue-specific expression, which are also underrepresented on the X chromosome. To test this, we compared the expression of three tissue-specific reporter genes (ovary, accessory gland and Malpighian tubule) inserted at various autosomal and X-chromosomal locations. In contrast to testis-specific reporter genes, we found no reduction of X-linked expression in any of the other tissues. In accessory gland and Malpighian tubule, we detected higher expression of the X-linked reporter genes, which suggests that they are at least partially dosage compensated. We found no difference in the tissue-specificity of X-linked and autosomal reporter genes. These findings indicate that, in general, the X chromosome is not a detrimental environment for tissue-specific gene expression and that the suppression of X-linked expression is limited to the male germline."}],"year":"2017","status":"public","title":"Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster","date_created":"2021-08-10T08:12:52Z","publisher":"Dryad","_id":"9861","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.02f6r"}],"doi":"10.5061/dryad.02f6r","oa":1},{"isi":1,"scopus_import":"1","author":[{"last_name":"Nanda","full_name":"Nanda, Gaurav","first_name":"Gaurav"},{"id":"2A67C376-F248-11E8-B48F-1D18A9856A87","last_name":"Aguilera Servin","full_name":"Aguilera Servin, Juan L","first_name":"Juan L","orcid":"0000-0002-2862-8372"},{"last_name":"Rakyta","full_name":"Rakyta, Péter","first_name":"Péter"},{"first_name":"Andor","full_name":"Kormányos, Andor","last_name":"Kormányos"},{"first_name":"Reinhold","last_name":"Kleiner","full_name":"Kleiner, Reinhold"},{"first_name":"Dieter","full_name":"Koelle, Dieter","last_name":"Koelle"},{"full_name":"Watanabe, Kazuo","last_name":"Watanabe","first_name":"Kazuo"},{"last_name":"Taniguchi","full_name":"Taniguchi, Takashi","first_name":"Takashi"},{"full_name":"Vandersypen, Lieven","last_name":"Vandersypen","first_name":"Lieven"},{"full_name":"Goswami, Srijit","last_name":"Goswami","first_name":"Srijit"}],"month":"05","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","quality_controlled":"1","type":"journal_article","ddc":["621"],"publisher":"American Chemical Society","file_date_updated":"2020-07-14T12:48:18Z","oa":1,"_id":"988","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"The current-phase relation (CPR) of a Josephson junction (JJ) determines how the supercurrent evolves with the superconducting phase difference across the junction. Knowledge of the CPR is essential in order to understand the response of a JJ to various external parameters. Despite the rising interest in ultraclean encapsulated graphene JJs, the CPR of such junctions remains unknown. Here, we use a fully gate-tunable graphene superconducting quantum intereference device (SQUID) to determine the CPR of ballistic graphene JJs. Each of the two JJs in the SQUID is made with graphene encapsulated in hexagonal boron nitride. By independently controlling the critical current of the JJs, we can operate the SQUID either in a symmetric or asymmetric configuration. The highly asymmetric SQUID allows us to phase-bias one of the JJs and thereby directly obtain its CPR. The CPR is found to be skewed, deviating significantly from a sinusoidal form. The skewness can be tuned with the gate voltage and oscillates in antiphase with Fabry-Pérot resistance oscillations of the ballistic graphene cavity. We compare our experiments with tight-binding calculations that include realistic graphene-superconductor interfaces and find a good qualitative agreement."}],"external_id":{"isi":["000403631600011"]},"title":"Current-phase relation of ballistic graphene Josephson junctions","issue":"6","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","department":[{"_id":"NanoFab"}],"citation":{"ista":"Nanda G, Aguilera Servin JL, Rakyta P, Kormányos A, Kleiner R, Koelle D, Watanabe K, Taniguchi T, Vandersypen L, Goswami S. 2017. Current-phase relation of ballistic graphene Josephson junctions. Nano Letters. 17(6), 3396–3401.","ieee":"G. Nanda <i>et al.</i>, “Current-phase relation of ballistic graphene Josephson junctions,” <i>Nano Letters</i>, vol. 17, no. 6. American Chemical Society, pp. 3396–3401, 2017.","apa":"Nanda, G., Aguilera Servin, J. L., Rakyta, P., Kormányos, A., Kleiner, R., Koelle, D., … Goswami, S. (2017). Current-phase relation of ballistic graphene Josephson junctions. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.7b00097\">https://doi.org/10.1021/acs.nanolett.7b00097</a>","chicago":"Nanda, Gaurav, Juan L Aguilera Servin, Péter Rakyta, Andor Kormányos, Reinhold Kleiner, Dieter Koelle, Kazuo Watanabe, Takashi Taniguchi, Lieven Vandersypen, and Srijit Goswami. “Current-Phase Relation of Ballistic Graphene Josephson Junctions.” <i>Nano Letters</i>. American Chemical Society, 2017. <a href=\"https://doi.org/10.1021/acs.nanolett.7b00097\">https://doi.org/10.1021/acs.nanolett.7b00097</a>.","ama":"Nanda G, Aguilera Servin JL, Rakyta P, et al. Current-phase relation of ballistic graphene Josephson junctions. <i>Nano Letters</i>. 2017;17(6):3396-3401. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.7b00097\">10.1021/acs.nanolett.7b00097</a>","mla":"Nanda, Gaurav, et al. “Current-Phase Relation of Ballistic Graphene Josephson Junctions.” <i>Nano Letters</i>, vol. 17, no. 6, American Chemical Society, 2017, pp. 3396–401, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.7b00097\">10.1021/acs.nanolett.7b00097</a>.","short":"G. Nanda, J.L. Aguilera Servin, P. Rakyta, A. Kormányos, R. Kleiner, D. Koelle, K. Watanabe, T. Taniguchi, L. Vandersypen, S. Goswami, Nano Letters 17 (2017) 3396–3401."},"page":"3396 - 3401","article_processing_charge":"No","day":"05","pubrep_id":"826","date_published":"2017-05-05T00:00:00Z","has_accepted_license":"1","date_updated":"2025-07-10T12:02:04Z","publication":"Nano Letters","publist_id":"6412","volume":17,"date_created":"2018-12-11T11:49:33Z","doi":"10.1021/acs.nanolett.7b00097","file":[{"date_updated":"2020-07-14T12:48:18Z","access_level":"open_access","checksum":"22021daa90cf13b01becd776838acb7b","content_type":"application/pdf","file_size":508638,"date_created":"2018-12-12T10:13:50Z","file_name":"IST-2017-826-v1+1_2017_Aguilera-Servin_Current.pdf","file_id":"5037","creator":"system","relation":"main_file"}],"publication_identifier":{"issn":["1530-6984"]},"intvolume":"        17","publication_status":"published","status":"public","year":"2017","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"}},{"intvolume":"     10302","publication_identifier":{"issn":["03029743"]},"status":"public","publication_status":"published","year":"2017","publist_id":"6410","volume":10302,"date_created":"2018-12-11T11:49:34Z","doi":"10.1007/978-3-319-58771-4_45","conference":{"end_date":"2017-06-08","start_date":"2017-06-04","name":"SSVM:  Scale Space and Variational Methods in Computer Vision","location":"Kolding, Denmark"},"day":"18","date_published":"2017-05-18T00:00:00Z","date_updated":"2023-09-22T09:55:50Z","department":[{"_id":"JaMa"}],"citation":{"mla":"Maas, Jan, et al. <i>Transport Based Image Morphing with Intensity Modulation</i>. Edited by François Lauze et al., vol. 10302, Springer, 2017, pp. 563–77, doi:<a href=\"https://doi.org/10.1007/978-3-319-58771-4_45\">10.1007/978-3-319-58771-4_45</a>.","short":"J. Maas, M. Rumpf, S. Simon, in:, F. Lauze, Y. Dong, A. Bjorholm Dahl (Eds.), Springer, 2017, pp. 563–577.","ama":"Maas J, Rumpf M, Simon S. Transport based image morphing with intensity modulation. In: Lauze F, Dong Y, Bjorholm Dahl A, eds. Vol 10302. Springer; 2017:563-577. doi:<a href=\"https://doi.org/10.1007/978-3-319-58771-4_45\">10.1007/978-3-319-58771-4_45</a>","apa":"Maas, J., Rumpf, M., &#38; Simon, S. (2017). Transport based image morphing with intensity modulation. In F. Lauze, Y. Dong, &#38; A. Bjorholm Dahl (Eds.) (Vol. 10302, pp. 563–577). Presented at the SSVM:  Scale Space and Variational Methods in Computer Vision, Kolding, Denmark: Springer. <a href=\"https://doi.org/10.1007/978-3-319-58771-4_45\">https://doi.org/10.1007/978-3-319-58771-4_45</a>","chicago":"Maas, Jan, Martin Rumpf, and Stefan Simon. “Transport Based Image Morphing with Intensity Modulation.” edited by François Lauze, Yiqiu Dong, and Anders Bjorholm Dahl, 10302:563–77. Springer, 2017. <a href=\"https://doi.org/10.1007/978-3-319-58771-4_45\">https://doi.org/10.1007/978-3-319-58771-4_45</a>.","ieee":"J. Maas, M. Rumpf, and S. Simon, “Transport based image morphing with intensity modulation,” presented at the SSVM:  Scale Space and Variational Methods in Computer Vision, Kolding, Denmark, 2017, vol. 10302, pp. 563–577.","ista":"Maas J, Rumpf M, Simon S. 2017. Transport based image morphing with intensity modulation. SSVM:  Scale Space and Variational Methods in Computer Vision, LNCS, vol. 10302, 563–577."},"page":"563 - 577","article_processing_charge":"No","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"We present a generalized optimal transport model in which the mass-preserving constraint for the L2-Wasserstein distance is relaxed by introducing a source term in the continuity equation. The source term is also incorporated in the path energy by means of its squared L2-norm in time of a functional with linear growth in space. This extension of the original transport model enables local density modulations, which is a desirable feature in applications such as image warping and blending. A key advantage of the use of a functional with linear growth in space is that it allows for singular sources and sinks, which can be supported on points or lines. On a technical level, the L2-norm in time ensures a disintegration of the source in time, which we use to obtain the well-posedness of the model and the existence of geodesic paths. The numerical discretization is based on the proximal splitting approach [18] and selected numerical test cases show the potential of the proposed approach. Furthermore, the approach is applied to the warping and blending of textures."}],"external_id":{"isi":["000432210900045"]},"title":"Transport based image morphing with intensity modulation","publisher":"Springer","_id":"989","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa_version":"None","editor":[{"full_name":"Lauze, François","last_name":"Lauze","first_name":"François"},{"full_name":"Dong, Yiqiu","last_name":"Dong","first_name":"Yiqiu"},{"first_name":"Anders","full_name":"Bjorholm Dahl, Anders","last_name":"Bjorholm Dahl"}],"quality_controlled":"1","type":"conference","isi":1,"scopus_import":"1","alternative_title":["LNCS"],"author":[{"id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","full_name":"Maas, Jan","last_name":"Maas","first_name":"Jan","orcid":"0000-0002-0845-1338"},{"full_name":"Rumpf, Martin","last_name":"Rumpf","first_name":"Martin"},{"full_name":"Simon, Stefan","last_name":"Simon","first_name":"Stefan"}],"month":"05"}]