[{"page":"55 - 80","author":[{"last_name":"Kasten","first_name":"Jens","full_name":"Kasten, Jens"},{"full_name":"Reininghaus, Jan","first_name":"Jan","id":"4505473A-F248-11E8-B48F-1D18A9856A87","last_name":"Reininghaus"},{"last_name":"Hotz","full_name":"Hotz, Ingrid","first_name":"Ingrid"},{"full_name":"Hege, Hans","first_name":"Hans","last_name":"Hege"},{"first_name":"Bernd","full_name":"Noack, Bernd","last_name":"Noack"},{"first_name":"Guillaume","full_name":"Daviller, Guillaume","last_name":"Daviller"},{"last_name":"Morzyński","full_name":"Morzyński, Marek","first_name":"Marek"}],"date_published":"2016-01-01T00:00:00Z","intvolume":"        68","date_updated":"2021-01-12T06:49:09Z","publist_id":"6118","oa":1,"volume":68,"language":[{"iso":"eng"}],"publisher":"Polish Academy of Sciences Publishing House","citation":{"ieee":"J. Kasten <i>et al.</i>, “Acceleration feature points of unsteady shear flows,” <i>Archives of Mechanics</i>, vol. 68, no. 1. Polish Academy of Sciences Publishing House, pp. 55–80, 2016.","short":"J. Kasten, J. Reininghaus, I. Hotz, H. Hege, B. Noack, G. Daviller, M. Morzyński, Archives of Mechanics 68 (2016) 55–80.","ista":"Kasten J, Reininghaus J, Hotz I, Hege H, Noack B, Daviller G, Morzyński M. 2016. Acceleration feature points of unsteady shear flows. Archives of Mechanics. 68(1), 55–80.","ama":"Kasten J, Reininghaus J, Hotz I, et al. Acceleration feature points of unsteady shear flows. <i>Archives of Mechanics</i>. 2016;68(1):55-80.","chicago":"Kasten, Jens, Jan Reininghaus, Ingrid Hotz, Hans Hege, Bernd Noack, Guillaume Daviller, and Marek Morzyński. “Acceleration Feature Points of Unsteady Shear Flows.” <i>Archives of Mechanics</i>. Polish Academy of Sciences Publishing House, 2016.","mla":"Kasten, Jens, et al. “Acceleration Feature Points of Unsteady Shear Flows.” <i>Archives of Mechanics</i>, vol. 68, no. 1, Polish Academy of Sciences Publishing House, 2016, pp. 55–80.","apa":"Kasten, J., Reininghaus, J., Hotz, I., Hege, H., Noack, B., Daviller, G., &#38; Morzyński, M. (2016). Acceleration feature points of unsteady shear flows. <i>Archives of Mechanics</i>. Polish Academy of Sciences Publishing House."},"_id":"1216","publication":"Archives of Mechanics","scopus_import":1,"department":[{"_id":"HeEd"}],"status":"public","title":"Acceleration feature points of unsteady shear flows","date_created":"2018-12-11T11:50:46Z","issue":"1","oa_version":"Published Version","quality_controlled":"1","day":"01","type":"journal_article","abstract":[{"text":"A framework fo r extracting features in 2D transient flows, based on the acceleration field to ensure Galilean invariance is proposed in this paper. The minima of the acceleration magnitude (a superset of acceleration zeros) are extracted and discriminated into vortices and saddle points, based on the spectral properties of the velocity Jacobian. The extraction of topological features is performed with purely combinatorial algorithms from discrete computational topology. The feature points are prioritized with persistence, as a physically meaningful importance measure. These feature points are tracked in time with a robust algorithm for tracking features. Thus, a space-time hierarchy of the minima is built and vortex merging events are detected. We apply the acceleration feature extraction strategy to three two-dimensional shear flows: (1) an incompressible periodic cylinder wake, (2) an incompressible planar mixing layer and (3) a weakly compressible planar jet. The vortex-like acceleration feature points are shown to be well aligned with acceleration zeros, maxima of the vorticity magnitude, minima of the pressure field and minima of λ2.","lang":"eng"}],"acknowledgement":"The authors acknowledge funding of the German Re-\r\nsearch  Foundation  (DFG)  via  the  Collaborative  Re-\r\nsearch  Center  (SFB  557)  \\Control  of  Complex  Turbu-\r\nlent  Shear  Flows\"  and  the  Emmy  Noether  Program.\r\nFurther  funding  was  provided  by  the  Zuse  Institute\r\nBerlin  (ZIB),  the  DFG-CNRS  research  group  \\Noise\r\nGeneration in Turbulent Flows\" (2003{2010), the Chaire\r\nd'Excellence 'Closed-loop control of turbulent shear  ows\r\nusing reduced-order models' (TUCOROM) of the French\r\nAgence Nationale de la Recherche (ANR), and the Eu-\r\nropean  Social  Fund  (ESF  App.   No.   100098251).   We\r\nthank  the  Ambrosys  Ltd.  Society  for  Complex  Sys-\r\ntems  Management  and  the  Bernd  R.  Noack  Cybernet-\r\nics  Foundation  for  additional  support.   A  part  of  this\r\nwork was performed using HPC resources from GENCI-[CCRT/CINES/IDRIS]  supported  by  the  Grant  2011-\r\n[x2011020912","main_file_link":[{"open_access":"1","url":"http://am.ippt.pan.pl/am/article/viewFile/v68p55/pdf"}],"month":"01","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","year":"2016","publication_status":"published"},{"oa_version":"None","year":"2016","month":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication_status":"published","type":"journal_article","abstract":[{"text":"Understanding the regulation of T-cell responses during inflammation and auto-immunity is fundamental for designing efficient therapeutic strategies against immune diseases. In this regard, prostaglandin E 2 (PGE 2) is mostly considered a myeloid-derived immunosuppressive molecule. We describe for the first time that T cells secrete PGE 2 during T-cell receptor stimulation. In addition, we show that autocrine PGE 2 signaling through EP receptors is essential for optimal CD4 + T-cell activation in vitro and in vivo, and for T helper 1 (Th1) and regulatory T cell differentiation. PGE 2 was found to provide additive co-stimulatory signaling through AKT activation. Intravital multiphoton microscopy showed that triggering EP receptors in T cells is also essential for the stability of T cell-dendritic cell (DC) interactions and Th-cell accumulation in draining lymph nodes (LNs) during inflammation. We further demonstrated that blocking EP receptors in T cells during the initial phase of collagen-induced arthritis in mice resulted in a reduction of clinical arthritis. This could be attributable to defective T-cell activation, accompanied by a decline in activated and interferon-γ-producing CD4 + Th1 cells in draining LNs. In conclusion, we prove that T lymphocytes secret picomolar concentrations of PGE 2, which in turn provide additive co-stimulatory signaling, enabling T cells to attain a favorable activation threshold. PGE 2 signaling in T cells is also required for maintaining long and stable interactions with DCs within LNs. Blockade of EP receptors in vivo impairs T-cell activation and development of T cell-mediated inflammatory responses. This may have implications in various pathophysiological settings.","lang":"eng"}],"quality_controlled":"1","day":"01","date_updated":"2025-09-22T09:34:26Z","volume":94,"publist_id":"6116","intvolume":"        94","status":"public","external_id":{"isi":["000367628600005"]},"title":"Efficient T-cell priming and activation requires signaling through prostaglandin E2 (EP) receptors","department":[{"_id":"MiSi"}],"doi":"10.1038/icb.2015.62","citation":{"short":"V. Sreeramkumar, M. Hons, C. Punzón, J. Stein, D. Sancho, M. Fresno Forcelledo, N. Cuesta, Immunology and Cell Biology 94 (2016) 39–51.","ieee":"V. Sreeramkumar <i>et al.</i>, “Efficient T-cell priming and activation requires signaling through prostaglandin E2 (EP) receptors,” <i>Immunology and Cell Biology</i>, vol. 94, no. 1. Nature Publishing Group, pp. 39–51, 2016.","ama":"Sreeramkumar V, Hons M, Punzón C, et al. Efficient T-cell priming and activation requires signaling through prostaglandin E2 (EP) receptors. <i>Immunology and Cell Biology</i>. 2016;94(1):39-51. doi:<a href=\"https://doi.org/10.1038/icb.2015.62\">10.1038/icb.2015.62</a>","ista":"Sreeramkumar V, Hons M, Punzón C, Stein J, Sancho D, Fresno Forcelledo M, Cuesta N. 2016. Efficient T-cell priming and activation requires signaling through prostaglandin E2 (EP) receptors. Immunology and Cell Biology. 94(1), 39–51.","apa":"Sreeramkumar, V., Hons, M., Punzón, C., Stein, J., Sancho, D., Fresno Forcelledo, M., &#38; Cuesta, N. (2016). Efficient T-cell priming and activation requires signaling through prostaglandin E2 (EP) receptors. <i>Immunology and Cell Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/icb.2015.62\">https://doi.org/10.1038/icb.2015.62</a>","mla":"Sreeramkumar, Vinatha, et al. “Efficient T-Cell Priming and Activation Requires Signaling through Prostaglandin E2 (EP) Receptors.” <i>Immunology and Cell Biology</i>, vol. 94, no. 1, Nature Publishing Group, 2016, pp. 39–51, doi:<a href=\"https://doi.org/10.1038/icb.2015.62\">10.1038/icb.2015.62</a>.","chicago":"Sreeramkumar, Vinatha, Miroslav Hons, Carmen Punzón, Jens Stein, David Sancho, Manuel Fresno Forcelledo, and Natalia Cuesta. “Efficient T-Cell Priming and Activation Requires Signaling through Prostaglandin E2 (EP) Receptors.” <i>Immunology and Cell Biology</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/icb.2015.62\">https://doi.org/10.1038/icb.2015.62</a>."},"publication":"Immunology and Cell Biology","issue":"1","date_created":"2018-12-11T11:50:46Z","acknowledgement":"This manuscript has been supported by grants SAF2007-61716 and S-SAL-0159/2006 awarded by the Spanish Ministry of Science and Education and the Community of Madrid to Dr M Fresno.","isi":1,"language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"Nature Publishing Group","page":"39 - 51","author":[{"last_name":"Sreeramkumar","full_name":"Sreeramkumar, Vinatha","first_name":"Vinatha"},{"full_name":"Hons, Miroslav","first_name":"Miroslav","id":"4167FE56-F248-11E8-B48F-1D18A9856A87","last_name":"Hons","orcid":"0000-0002-6625-3348"},{"first_name":"Carmen","full_name":"Punzón, Carmen","last_name":"Punzón"},{"last_name":"Stein","full_name":"Stein, Jens","first_name":"Jens"},{"full_name":"Sancho, David","first_name":"David","last_name":"Sancho"},{"last_name":"Fresno Forcelledo","full_name":"Fresno Forcelledo, Manuel","first_name":"Manuel"},{"first_name":"Natalia","full_name":"Cuesta, Natalia","last_name":"Cuesta"}],"date_published":"2016-01-01T00:00:00Z","scopus_import":"1","_id":"1217"},{"quality_controlled":"1","day":"01","type":"journal_article","abstract":[{"lang":"eng","text":"Investigating the physiology of cyanobacteria cultured under a diel light regime is relevant for a better understanding of the resulting growth characteristics and for specific biotechnological applications that are foreseen for these photosynthetic organisms. Here, we present the results of a multiomics study of the model cyanobacterium Synechocystis sp. strain PCC 6803, cultured in a lab-scale photobioreactor in physiological conditions relevant for large-scale culturing. The culture was sparged withN2 andCO2, leading to an anoxic environment during the dark period. Growth followed the availability of light. Metabolite analysis performed with 1Hnuclear magnetic resonance analysis showed that amino acids involved in nitrogen and sulfur assimilation showed elevated levels in the light. Most protein levels, analyzed through mass spectrometry, remained rather stable. However, several high-light-response proteins and stress-response proteins showed distinct changes at the onset of the light period. Microarray-based transcript analysis found common patterns of~56% of the transcriptome following the diel regime. These oscillating transcripts could be grouped coarsely into genes that were upregulated and downregulated in the dark period. The accumulated glycogen was degraded in the anaerobic environment in the dark. A small part was degraded gradually, reflecting basic maintenance requirements of the cells in darkness. Surprisingly, the largest part was degraded rapidly in a short time span at the end of the dark period. This degradation could allow rapid formation of metabolic intermediates at the end of the dark period, preparing the cells for the resumption of growth at the start of the light period."}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"07","year":"2016","publication_status":"published","oa_version":"Submitted Version","citation":{"chicago":"Angermayr, Andreas, Pascal Van Alphen, Dicle Hasdemir, Gertjan Kramer, Muzamal Iqbal, Wilmar Van Grondelle, Huub Hoefsloot, Younghae Choi, and Klaas Hellingwerf. “Culturing Synechocystis Sp. Strain Pcc 6803 with N2 and CO2 in a Diel Regime Reveals Multiphase Glycogen Dynamics with Low Maintenance Costs.” <i>Applied and Environmental Microbiology</i>. American Society for Microbiology, 2016. <a href=\"https://doi.org/10.1128/AEM.00256-16\">https://doi.org/10.1128/AEM.00256-16</a>.","mla":"Angermayr, Andreas, et al. “Culturing Synechocystis Sp. Strain Pcc 6803 with N2 and CO2 in a Diel Regime Reveals Multiphase Glycogen Dynamics with Low Maintenance Costs.” <i>Applied and Environmental Microbiology</i>, vol. 82, no. 14, American Society for Microbiology, 2016, pp. 4180–89, doi:<a href=\"https://doi.org/10.1128/AEM.00256-16\">10.1128/AEM.00256-16</a>.","apa":"Angermayr, A., Van Alphen, P., Hasdemir, D., Kramer, G., Iqbal, M., Van Grondelle, W., … Hellingwerf, K. (2016). Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs. <i>Applied and Environmental Microbiology</i>. American Society for Microbiology. <a href=\"https://doi.org/10.1128/AEM.00256-16\">https://doi.org/10.1128/AEM.00256-16</a>","ieee":"A. Angermayr <i>et al.</i>, “Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs,” <i>Applied and Environmental Microbiology</i>, vol. 82, no. 14. American Society for Microbiology, pp. 4180–4189, 2016.","short":"A. Angermayr, P. Van Alphen, D. Hasdemir, G. Kramer, M. Iqbal, W. Van Grondelle, H. Hoefsloot, Y. Choi, K. Hellingwerf, Applied and Environmental Microbiology 82 (2016) 4180–4189.","ista":"Angermayr A, Van Alphen P, Hasdemir D, Kramer G, Iqbal M, Van Grondelle W, Hoefsloot H, Choi Y, Hellingwerf K. 2016. Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs. Applied and Environmental Microbiology. 82(14), 4180–4189.","ama":"Angermayr A, Van Alphen P, Hasdemir D, et al. Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs. <i>Applied and Environmental Microbiology</i>. 2016;82(14):4180-4189. doi:<a href=\"https://doi.org/10.1128/AEM.00256-16\">10.1128/AEM.00256-16</a>"},"doi":"10.1128/AEM.00256-16","publication":"Applied and Environmental Microbiology","department":[{"_id":"ToBo"}],"status":"public","external_id":{"isi":["000379345100012"]},"title":"Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs","intvolume":"        82","date_updated":"2025-09-22T09:35:22Z","publist_id":"6117","oa":1,"volume":82,"isi":1,"acknowledgement":"Dutch Ministry of Economic Affairs, Agriculture, and Innovation through the program BioSolar CellsS. Andreas Angermayr,Pascal van Alphen, Klaas J. Hellingwerf\r\nWe thank Naira Quintana (presently at Rousselot, Belgium) for the ini-\r\ntiative  at  the  10th  Cyanobacterial  Molecular  Biology  Workshop\r\n(CMBW), June 2010, Lake Arrowhead, Los Angeles, CA, USA, to start the\r\ncollaborative endeavor reported here. We thank Timo Maarleveld from\r\nCWI/VU (Amsterdam) for a custom-made Python script handling the output from the NMR analysis and for evaluating and visualizing the\r\nseparate metabolites for their evaluation. We thank Rob Verpoorte from\r\nLeiden University (metabolome analysis) and Hans Aerts from the AMC\r\n(proteome analysis) for lab space and equipment. We thank Robert Leh-\r\nmann (Humboldt University Berlin) and Ilka Axmann (University of\r\nDüsseldorf) for sharing the R-code for the LOS transformation of the\r\ntranscript data. We thank Hans C. P. Matthijs from IBED for inspiring\r\ndialogues and insightful thoughts on continuous culturing of cyanobac-\r\nteria. We thank Sandra Waaijenborg for performing the transcript nor-\r\nmalization and Johan Westerhuis from BDA, Jeroen van der Steen and\r\nFilipe Branco dos Santos from MMP, and Lucas Stal from IBED/NIOZ for\r\nhelpful discussions. We thank Milou Schuurmans from MMP for help\r\nwith sampling and glycogen determination. We thank the members of the\r\nRNA Biology & Applied Bioinformatics group at SILS, in particular Selina\r\nvan Leeuwen, Elisa Hoekstra, and Martijs Jonker, for the microarray anal-\r\nysis. We thank the reviewers of this work for their insightful comments\r\nwhich improved the quality of the manuscript. This work, including the efforts of S. Andreas Angermayr, Pascal van\r\nAlphen, and Klaas J. Hellingwerf, was funded by Dutch Ministry of Eco-\r\nnomic Affairs, Agriculture, and Innovation through the program BioSolar\r\nCells.","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959195/","open_access":"1"}],"date_created":"2018-12-11T11:50:46Z","issue":"14","_id":"1218","scopus_import":"1","page":"4180 - 4189","author":[{"id":"4677C796-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8619-2223","last_name":"Angermayr","full_name":"Angermayr, Andreas","first_name":"Andreas"},{"last_name":"Van Alphen","first_name":"Pascal","full_name":"Van Alphen, Pascal"},{"last_name":"Hasdemir","first_name":"Dicle","full_name":"Hasdemir, Dicle"},{"full_name":"Kramer, Gertjan","first_name":"Gertjan","last_name":"Kramer"},{"full_name":"Iqbal, Muzamal","first_name":"Muzamal","last_name":"Iqbal"},{"last_name":"Van Grondelle","first_name":"Wilmar","full_name":"Van Grondelle, Wilmar"},{"last_name":"Hoefsloot","full_name":"Hoefsloot, Huub","first_name":"Huub"},{"last_name":"Choi","full_name":"Choi, Younghae","first_name":"Younghae"},{"first_name":"Klaas","full_name":"Hellingwerf, Klaas","last_name":"Hellingwerf"}],"date_published":"2016-07-01T00:00:00Z","article_processing_charge":"No","language":[{"iso":"eng"}],"publisher":"American Society for Microbiology"},{"intvolume":"        44","volume":44,"oa":1,"publist_id":"6115","date_updated":"2025-09-22T09:33:43Z","ec_funded":1,"publication":"Annals of Probability","citation":{"mla":"Lee, Jioon, et al. “Bulk Universality for Deformed Wigner Matrices.” <i>Annals of Probability</i>, vol. 44, no. 3, Institute of Mathematical Statistics, 2016, pp. 2349–425, doi:<a href=\"https://doi.org/10.1214/15-AOP1023\">10.1214/15-AOP1023</a>.","chicago":"Lee, Jioon, Kevin Schnelli, Ben Stetler, and Horngtzer Yau. “Bulk Universality for Deformed Wigner Matrices.” <i>Annals of Probability</i>. Institute of Mathematical Statistics, 2016. <a href=\"https://doi.org/10.1214/15-AOP1023\">https://doi.org/10.1214/15-AOP1023</a>.","apa":"Lee, J., Schnelli, K., Stetler, B., &#38; Yau, H. (2016). Bulk universality for deformed wigner matrices. <i>Annals of Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/15-AOP1023\">https://doi.org/10.1214/15-AOP1023</a>","ieee":"J. Lee, K. Schnelli, B. Stetler, and H. Yau, “Bulk universality for deformed wigner matrices,” <i>Annals of Probability</i>, vol. 44, no. 3. Institute of Mathematical Statistics, pp. 2349–2425, 2016.","short":"J. Lee, K. Schnelli, B. Stetler, H. Yau, Annals of Probability 44 (2016) 2349–2425.","ista":"Lee J, Schnelli K, Stetler B, Yau H. 2016. Bulk universality for deformed wigner matrices. Annals of Probability. 44(3), 2349–2425.","ama":"Lee J, Schnelli K, Stetler B, Yau H. Bulk universality for deformed wigner matrices. <i>Annals of Probability</i>. 2016;44(3):2349-2425. doi:<a href=\"https://doi.org/10.1214/15-AOP1023\">10.1214/15-AOP1023</a>"},"doi":"10.1214/15-AOP1023","department":[{"_id":"LaEr"}],"title":"Bulk universality for deformed wigner matrices","external_id":{"isi":["000376180700016"],"arxiv":["1405.6634"]},"status":"public","arxiv":1,"oa_version":"Preprint","day":"01","quality_controlled":"1","abstract":[{"text":"We consider N×N random matrices of the form H = W + V where W is a real symmetric or complex Hermitian Wigner matrix and V is a random or deterministic, real, diagonal matrix whose entries are independent of W. We assume subexponential decay for the matrix entries of W, and we choose V so that the eigenvalues ofW and V are typically of the same order. For a large class of diagonal matrices V , we show that the local statistics in the bulk of the spectrum are universal in the limit of large N.","lang":"eng"}],"type":"journal_article","publication_status":"published","year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","date_published":"2016-01-01T00:00:00Z","page":"2349 - 2425","author":[{"full_name":"Lee, Jioon","first_name":"Jioon","last_name":"Lee"},{"first_name":"Kevin","full_name":"Schnelli, Kevin","last_name":"Schnelli","orcid":"0000-0003-0954-3231","id":"434AD0AE-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Stetler","first_name":"Ben","full_name":"Stetler, Ben"},{"last_name":"Yau","first_name":"Horngtzer","full_name":"Yau, Horngtzer"}],"publisher":"Institute of Mathematical Statistics","language":[{"iso":"eng"}],"article_processing_charge":"No","_id":"1219","scopus_import":"1","project":[{"grant_number":"338804","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Random matrices, universality and disordered quantum systems"}],"date_created":"2018-12-11T11:50:47Z","issue":"3","isi":1,"acknowledgement":"J.C. was supported in part by National Research Foundation of Korea Grant 2011-0013474 and TJ Park Junior Faculty Fellowship.\r\nK.S. was supported by ERC Advanced Grant RANMAT, No. 338804, and the \"Fund for Math.\"\r\nB.S. was supported by NSF GRFP Fellowship DGE-1144152.\r\nH.Y. was supported in part by NSF Grant DMS-13-07444 and Simons investigator fellowship. We thank Paul Bourgade, László Erd ̋os and Antti Knowles for helpful comments. We are grateful to the Taida Institute for Mathematical\r\nSciences and National Taiwan Universality for their hospitality during part of this\r\nresearch. We thank Thomas Spencer and the Institute for Advanced Study for their\r\nhospitality during the academic year 2013–2014.  ","main_file_link":[{"url":"https://arxiv.org/abs/1405.6634","open_access":"1"}]},{"citation":{"mla":"Waitukaitis, Scott R., and Martin Van Hecke. “Origami Building Blocks: Generic and Special Four-Vertices.” <i>Physical Review E - Statistical, Nonlinear, and Soft Matter Physics</i>, vol. 93, no. 2, 023003, American Physiological Society, 2016, doi:<a href=\"https://doi.org/10.1103/PhysRevE.93.023003\">10.1103/PhysRevE.93.023003</a>.","chicago":"Waitukaitis, Scott R, and Martin Van Hecke. “Origami Building Blocks: Generic and Special Four-Vertices.” <i>Physical Review E - Statistical, Nonlinear, and Soft Matter Physics</i>. American Physiological Society, 2016. <a href=\"https://doi.org/10.1103/PhysRevE.93.023003\">https://doi.org/10.1103/PhysRevE.93.023003</a>.","apa":"Waitukaitis, S. R., &#38; Van Hecke, M. (2016). Origami building blocks: Generic and special four-vertices. <i>Physical Review E - Statistical, Nonlinear, and Soft Matter Physics</i>. American Physiological Society. <a href=\"https://doi.org/10.1103/PhysRevE.93.023003\">https://doi.org/10.1103/PhysRevE.93.023003</a>","ieee":"S. R. Waitukaitis and M. Van Hecke, “Origami building blocks: Generic and special four-vertices,” <i>Physical Review E - Statistical, Nonlinear, and Soft Matter Physics</i>, vol. 93, no. 2. American Physiological Society, 2016.","short":"S.R. Waitukaitis, M. Van Hecke, Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 93 (2016).","ista":"Waitukaitis SR, Van Hecke M. 2016. Origami building blocks: Generic and special four-vertices. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 93(2), 023003.","ama":"Waitukaitis SR, Van Hecke M. Origami building blocks: Generic and special four-vertices. <i>Physical Review E - Statistical, Nonlinear, and Soft Matter Physics</i>. 2016;93(2). doi:<a href=\"https://doi.org/10.1103/PhysRevE.93.023003\">10.1103/PhysRevE.93.023003</a>"},"doi":"10.1103/PhysRevE.93.023003","publication":"Physical Review E - Statistical, Nonlinear, and Soft Matter Physics","status":"public","title":"Origami building blocks: Generic and special four-vertices","external_id":{"arxiv":["1507.08442"]},"intvolume":"        93","date_updated":"2021-01-12T06:49:10Z","oa":1,"volume":93,"publist_id":"7932","quality_controlled":"1","day":"03","type":"journal_article","abstract":[{"lang":"eng","text":"Four rigid panels connected by hinges that meet at a point form a four-vertex, the fundamental building block of origami metamaterials. Most materials designed so far are based on the same four-vertex geometry, and little is known regarding how different geometries affect folding behavior. Here we systematically categorize and analyze the geometries and resulting folding motions of Euclidean four-vertices. Comparing the relative sizes of sector angles, we identify three types of generic vertices and two accompanying subtypes. We determine which folds can fully close and the possible mountain-valley assignments. Next, we consider what occurs when sector angles or sums thereof are set equal, which results in 16 special vertex types. One of these, flat-foldable vertices, has been studied extensively, but we show that a wide variety of qualitatively different folding motions exist for the other 15 special and 3 generic types. Our work establishes a straightforward set of rules for understanding the folding motion of both generic and special four-vertices and serves as a roadmap for designing origami metamaterials."}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","month":"02","year":"2016","publication_status":"published","arxiv":1,"oa_version":"Preprint","article_number":"023003","_id":"122","author":[{"full_name":"Waitukaitis, Scott R","first_name":"Scott R","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","last_name":"Waitukaitis","orcid":"0000-0002-2299-3176"},{"last_name":"Van Hecke","first_name":"Martin","full_name":"Van Hecke, Martin"}],"date_published":"2016-02-03T00:00:00Z","language":[{"iso":"eng"}],"publisher":"American Physiological Society","acknowledgement":"This work is part of the research programme of the Foundation for Fundamental Research on Matter (FOM), which is part of the Netherlands Organisation for Scientific Research (NWO).","main_file_link":[{"url":"https://arxiv.org/abs/1507.08442","open_access":"1"}],"date_created":"2018-12-11T11:44:44Z","issue":"2","extern":"1"},{"quality_controlled":"1","day":"01","type":"conference","abstract":[{"lang":"eng","text":"Theoretical and numerical aspects of aerodynamic efficiency of propulsion systems coupled to the boundary layer of a fuselage are studied. We discuss the effects of local flow fields, which are affected both by conservative flow acceleration as well as total pressure losses, on the efficiency of boundary layer immersed propulsion devices. We introduce the concept of a boundary layer retardation turbine that helps reduce skin friction over the fuselage. We numerically investigate efficiency gains offered by boundary layer and wake interacting devices. We discuss the results in terms of a total energy consumption framework and show that efficiency gains of any device depend on all the other elements of the propulsion system."}],"main_file_link":[{"url":"https://ntrs.nasa.gov/search.jsp?R=20160010167&amp;hterms=Fuselage+boundary+layer+ingestion+propulsion+applied+thin+haul+commuter+aircraft+optimal+efficiency&amp;qs=N%3D0%26Ntk%3DAll%26Ntt%3DFuselage%2520boundary%2520layer%2520ingestion%2520propulsion%2520applied%2520to%2520a%2520thin%2520haul%2520commuter%2520aircraft%2520for%2520optimal%2520efficiency%26Ntx%3Dmode%2520matchallpartial%26Nm%3D123%7CCollection%7CNASA%2520STI%7C%7C17%7CCollection%7CNACA","open_access":"1"}],"month":"06","year":"2016","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publication_status":"published","date_created":"2018-12-11T11:50:47Z","oa_version":"Preprint","doi":"10.2514/6.2016-3764","citation":{"ama":"Mikić G, Stoll A, Bevirt J, Grah R, Moore M. Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency. In: AIAA; 2016:1-19. doi:<a href=\"https://doi.org/10.2514/6.2016-3764\">10.2514/6.2016-3764</a>","ista":"Mikić G, Stoll A, Bevirt J, Grah R, Moore M. 2016. Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency. AIAA: Aviation Technology, Integration, and Operations Conference, 1–19.","short":"G. Mikić, A. Stoll, J. Bevirt, R. Grah, M. Moore, in:, AIAA, 2016, pp. 1–19.","ieee":"G. Mikić, A. Stoll, J. Bevirt, R. Grah, and M. Moore, “Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency,” presented at the AIAA: Aviation Technology, Integration, and Operations Conference, Washington, D.C., USA, 2016, pp. 1–19.","apa":"Mikić, G., Stoll, A., Bevirt, J., Grah, R., &#38; Moore, M. (2016). Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency (pp. 1–19). Presented at the AIAA: Aviation Technology, Integration, and Operations Conference, Washington, D.C., USA: AIAA. <a href=\"https://doi.org/10.2514/6.2016-3764\">https://doi.org/10.2514/6.2016-3764</a>","mla":"Mikić, Gregor, et al. <i>Fuselage Boundary Layer Ingestion Propulsion Applied to a Thin Haul Commuter Aircraft for Optimal Efficiency</i>. AIAA, 2016, pp. 1–19, doi:<a href=\"https://doi.org/10.2514/6.2016-3764\">10.2514/6.2016-3764</a>.","chicago":"Mikić, Gregor, Alex Stoll, Joe Bevirt, Rok Grah, and Mark Moore. “Fuselage Boundary Layer Ingestion Propulsion Applied to a Thin Haul Commuter Aircraft for Optimal Efficiency,” 1–19. AIAA, 2016. <a href=\"https://doi.org/10.2514/6.2016-3764\">https://doi.org/10.2514/6.2016-3764</a>."},"_id":"1220","scopus_import":1,"department":[{"_id":"CaGu"},{"_id":"GaTk"}],"status":"public","title":"Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency","conference":{"name":"AIAA: Aviation Technology, Integration, and Operations Conference","end_date":"2016-06-17","start_date":"2016-06-13","location":"Washington, D.C., USA"},"page":"1 - 19","author":[{"first_name":"Gregor","full_name":"Mikić, Gregor","last_name":"Mikić"},{"full_name":"Stoll, Alex","first_name":"Alex","last_name":"Stoll"},{"first_name":"Joe","full_name":"Bevirt, Joe","last_name":"Bevirt"},{"first_name":"Rok","full_name":"Grah, Rok","last_name":"Grah","orcid":"0000-0003-2539-3560","id":"483E70DE-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Mark","full_name":"Moore, Mark","last_name":"Moore"}],"date_published":"2016-06-01T00:00:00Z","date_updated":"2023-02-21T10:17:50Z","publist_id":"6114","oa":1,"language":[{"iso":"eng"}],"publisher":"AIAA"},{"year":"2016","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","publication_status":"published","type":"journal_article","abstract":[{"text":"The Auxin Binding Protein 1 (ABP1) is one of the most studied proteins in plants. Since decades ago, it has been the prime receptor candidate for the plant hormone auxin with a plethora of described functions in auxin signaling and development. The developmental importance of ABP1 has recently been questioned by identification of Arabidopsis thaliana abp1 knock-out alleles that show no obvious phenotypes under normal growth conditions. In this study, we examined the contradiction between the normal growth and development of the abp1 knock-outs and the strong morphological defects observed in three different ethanol-inducible abp1 knock-down mutants ( abp1-AS, SS12K, SS12S). By analyzing segregating populations of abp1 knock-out vs. abp1 knock-down crosses we show that the strong morphological defects that were believed to be the result of conditional down-regulation of ABP1 can be reproduced also in the absence of the functional ABP1 protein. This data suggests that the phenotypes in abp1 knock-down lines are due to the off-target effects and asks for further reflections on the biological function of ABP1 or alternative explanations for the missing phenotypic defects in the abp1 loss-of-function alleles.","lang":"eng"}],"quality_controlled":"1","day":"20","oa_version":"Published Version","status":"public","title":"Strong morphological defects in conditional Arabidopsis abp1 knock-down mutants generated in absence of functional ABP1 protein","department":[{"_id":"JiFr"}],"citation":{"mla":"Michalko, Jaroslav, et al. “Strong Morphological Defects in Conditional Arabidopsis Abp1 Knock-down Mutants Generated in Absence of Functional ABP1 Protein.” <i>F1000 Research </i>, vol. 5, 86, F1000 Research, 2016, doi:<a href=\"https://doi.org/10.12688/f1000research.7654.1\">10.12688/f1000research.7654.1</a>.","chicago":"Michalko, Jaroslav, Matous Glanc, Catherine Perrot Rechenmann, and Jiří Friml. “Strong Morphological Defects in Conditional Arabidopsis Abp1 Knock-down Mutants Generated in Absence of Functional ABP1 Protein.” <i>F1000 Research </i>. F1000 Research, 2016. <a href=\"https://doi.org/10.12688/f1000research.7654.1\">https://doi.org/10.12688/f1000research.7654.1</a>.","apa":"Michalko, J., Glanc, M., Perrot Rechenmann, C., &#38; Friml, J. (2016). Strong morphological defects in conditional Arabidopsis abp1 knock-down mutants generated in absence of functional ABP1 protein. <i>F1000 Research </i>. F1000 Research. <a href=\"https://doi.org/10.12688/f1000research.7654.1\">https://doi.org/10.12688/f1000research.7654.1</a>","ista":"Michalko J, Glanc M, Perrot Rechenmann C, Friml J. 2016. Strong morphological defects in conditional Arabidopsis abp1 knock-down mutants generated in absence of functional ABP1 protein. F1000 Research . 5, 86.","ama":"Michalko J, Glanc M, Perrot Rechenmann C, Friml J. Strong morphological defects in conditional Arabidopsis abp1 knock-down mutants generated in absence of functional ABP1 protein. <i>F1000 Research </i>. 2016;5. doi:<a href=\"https://doi.org/10.12688/f1000research.7654.1\">10.12688/f1000research.7654.1</a>","ieee":"J. Michalko, M. Glanc, C. Perrot Rechenmann, and J. Friml, “Strong morphological defects in conditional Arabidopsis abp1 knock-down mutants generated in absence of functional ABP1 protein,” <i>F1000 Research </i>, vol. 5. F1000 Research, 2016.","short":"J. Michalko, M. Glanc, C. Perrot Rechenmann, J. Friml, F1000 Research  5 (2016)."},"doi":"10.12688/f1000research.7654.1","ec_funded":1,"publication":"F1000 Research ","article_type":"original","pubrep_id":"711","date_updated":"2025-04-15T07:48:02Z","volume":5,"publist_id":"6113","oa":1,"intvolume":"         5","file":[{"access_level":"open_access","content_type":"application/pdf","date_created":"2018-12-12T10:15:33Z","creator":"system","file_size":2990459,"date_updated":"2020-07-14T12:44:39Z","file_name":"IST-2016-711-v1+1_770cf1e0-612f-4e85-a500-54b6349fbbab_7654_-_jaroslav_michalko.pdf","file_id":"5154","checksum":"c9e50bb6096a7ba4a832969935820f19","relation":"main_file"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"This work was supported by ERC Independent Research grant (ERC-2011-StG-20101109-PSDP to JF). JM internship was supported by the grant “Action Austria – Slovakia”. MG was supported by the scholarship \"Stipendien der Stipendienstiftung der Republik Österreich\". Work by EH and CPR were supported by ANR blanc ANR-14-CE11-0018. We would like to thank Mark Estelle and Yunde Zhao for provid\r\n-\r\ning \r\nabp1-c1\r\n, \r\nabp1-TD1 \r\nand \r\nabp1-WTc1 \r\nseeds. We thank Emeline \r\nHuault for technical assistance.","file_date_updated":"2020-07-14T12:44:39Z","date_created":"2018-12-11T11:50:47Z","ddc":["581"],"project":[{"call_identifier":"FP7","name":"Polarity and subcellular dynamics in plants","_id":"25716A02-B435-11E9-9278-68D0E5697425","grant_number":"282300"}],"scopus_import":"1","_id":"1221","article_number":"86","article_processing_charge":"No","language":[{"iso":"eng"}],"publisher":"F1000 Research","has_accepted_license":"1","author":[{"first_name":"Jaroslav","full_name":"Michalko, Jaroslav","last_name":"Michalko","id":"483727CA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Matous","full_name":"Glanc, Matous","orcid":"0000-0003-0619-7783","last_name":"Glanc","id":"1AE1EA24-02D0-11E9-9BAA-DAF4881429F2"},{"last_name":"Perrot Rechenmann","first_name":"Catherine","full_name":"Perrot Rechenmann, Catherine"},{"first_name":"Jirí","full_name":"Friml, Jirí","last_name":"Friml","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2016-01-20T00:00:00Z"},{"oa_version":"Preprint","arxiv":1,"publication_status":"published","year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","day":"01","quality_controlled":"1","abstract":[{"text":"We consider packings of congruent circles on a square flat torus, i.e., periodic (w.r.t. a square lattice) planar circle packings, with the maximal circle radius. This problem is interesting due to a practical reason—the problem of “super resolution of images.” We have found optimal arrangements for N=6, 7 and 8 circles. Surprisingly, for the case N=7 there are three different optimal arrangements. Our proof is based on a computer enumeration of toroidal irreducible contact graphs.","lang":"eng"}],"type":"journal_article","publist_id":"6111","volume":55,"oa":1,"date_updated":"2025-09-22T09:32:23Z","intvolume":"        55","department":[{"_id":"HeEd"}],"external_id":{"arxiv":["1212.0649"],"isi":["000367625500001"]},"title":"Optimal packings of congruent circles on a square flat torus","status":"public","publication":"Discrete & Computational Geometry","doi":"10.1007/s00454-015-9742-6","citation":{"short":"O. Musin, A. Nikitenko, Discrete &#38; Computational Geometry 55 (2016) 1–20.","ieee":"O. Musin and A. Nikitenko, “Optimal packings of congruent circles on a square flat torus,” <i>Discrete &#38; Computational Geometry</i>, vol. 55, no. 1. Springer, pp. 1–20, 2016.","ama":"Musin O, Nikitenko A. Optimal packings of congruent circles on a square flat torus. <i>Discrete &#38; Computational Geometry</i>. 2016;55(1):1-20. doi:<a href=\"https://doi.org/10.1007/s00454-015-9742-6\">10.1007/s00454-015-9742-6</a>","ista":"Musin O, Nikitenko A. 2016. Optimal packings of congruent circles on a square flat torus. Discrete &#38; Computational Geometry. 55(1), 1–20.","apa":"Musin, O., &#38; Nikitenko, A. (2016). Optimal packings of congruent circles on a square flat torus. <i>Discrete &#38; Computational Geometry</i>. Springer. <a href=\"https://doi.org/10.1007/s00454-015-9742-6\">https://doi.org/10.1007/s00454-015-9742-6</a>","chicago":"Musin, Oleg, and Anton Nikitenko. “Optimal Packings of Congruent Circles on a Square Flat Torus.” <i>Discrete &#38; Computational Geometry</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s00454-015-9742-6\">https://doi.org/10.1007/s00454-015-9742-6</a>.","mla":"Musin, Oleg, and Anton Nikitenko. “Optimal Packings of Congruent Circles on a Square Flat Torus.” <i>Discrete &#38; Computational Geometry</i>, vol. 55, no. 1, Springer, 2016, pp. 1–20, doi:<a href=\"https://doi.org/10.1007/s00454-015-9742-6\">10.1007/s00454-015-9742-6</a>."},"issue":"1","date_created":"2018-12-11T11:50:48Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1212.0649"}],"isi":1,"acknowledgement":"We wish to thank Alexey Tarasov, Vladislav Volkov and Brittany Fasy for some useful comments and remarks, and especially Thom Sulanke for modifying surftri to suit our purposes. Oleg R. Musin was partially supported by the NSF Grant DMS-1400876 and by the RFBR Grant 15-01-99563. Anton V. Nikitenko was supported by the Chebyshev Laboratory (Department of Mathematics and Mechanics, St. Petersburg State University) under RF Government Grant 11.G34.31.0026.","publisher":"Springer","language":[{"iso":"eng"}],"article_processing_charge":"No","date_published":"2016-01-01T00:00:00Z","page":"1 - 20","author":[{"full_name":"Musin, Oleg","first_name":"Oleg","last_name":"Musin"},{"full_name":"Nikitenko, Anton","first_name":"Anton","id":"3E4FF1BA-F248-11E8-B48F-1D18A9856A87","last_name":"Nikitenko","orcid":"0000-0002-0659-3201"}],"scopus_import":"1","_id":"1222"},{"publication_status":"published","year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","abstract":[{"lang":"eng","text":"We consider a random Schrödinger operator on the binary tree with a random potential which is the sum of a random radially symmetric potential, Qr, and a random transversally periodic potential, κQt, with coupling constant κ. Using a new one-dimensional dynamical systems approach combined with Jensen's inequality in hyperbolic space (our key estimate) we obtain a fractional moment estimate proving localization for small and large κ. Together with a previous result we therefore obtain a model with two Anderson transitions, from localization to delocalization and back to localization, when increasing κ. As a by-product we also have a partially new proof of one-dimensional Anderson localization at any disorder."}],"type":"journal_article","day":"01","quality_controlled":"1","oa_version":"Preprint","arxiv":1,"external_id":{"isi":["000388627000004"],"arxiv":["1408.3961"]},"title":"Localization for transversally periodic random potentials on binary trees","status":"public","department":[{"_id":"LaEr"}],"publication":"Journal of Spectral Theory","doi":"10.4171/JST/132","citation":{"mla":"Froese, Richard, et al. “Localization for Transversally Periodic Random Potentials on Binary Trees.” <i>Journal of Spectral Theory</i>, vol. 6, no. 3, European Mathematical Society, 2016, pp. 557–600, doi:<a href=\"https://doi.org/10.4171/JST/132\">10.4171/JST/132</a>.","chicago":"Froese, Richard, Darrick Lee, Christian Sadel, Wolfgang Spitzer, and Günter Stolz. “Localization for Transversally Periodic Random Potentials on Binary Trees.” <i>Journal of Spectral Theory</i>. European Mathematical Society, 2016. <a href=\"https://doi.org/10.4171/JST/132\">https://doi.org/10.4171/JST/132</a>.","apa":"Froese, R., Lee, D., Sadel, C., Spitzer, W., &#38; Stolz, G. (2016). Localization for transversally periodic random potentials on binary trees. <i>Journal of Spectral Theory</i>. European Mathematical Society. <a href=\"https://doi.org/10.4171/JST/132\">https://doi.org/10.4171/JST/132</a>","ista":"Froese R, Lee D, Sadel C, Spitzer W, Stolz G. 2016. Localization for transversally periodic random potentials on binary trees. Journal of Spectral Theory. 6(3), 557–600.","ama":"Froese R, Lee D, Sadel C, Spitzer W, Stolz G. Localization for transversally periodic random potentials on binary trees. <i>Journal of Spectral Theory</i>. 2016;6(3):557-600. doi:<a href=\"https://doi.org/10.4171/JST/132\">10.4171/JST/132</a>","ieee":"R. Froese, D. Lee, C. Sadel, W. Spitzer, and G. Stolz, “Localization for transversally periodic random potentials on binary trees,” <i>Journal of Spectral Theory</i>, vol. 6, no. 3. European Mathematical Society, pp. 557–600, 2016.","short":"R. Froese, D. Lee, C. Sadel, W. Spitzer, G. Stolz, Journal of Spectral Theory 6 (2016) 557–600."},"publist_id":"6112","volume":6,"oa":1,"date_updated":"2025-09-22T09:32:55Z","intvolume":"         6","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1408.3961"}],"isi":1,"issue":"3","date_created":"2018-12-11T11:50:48Z","scopus_import":"1","_id":"1223","publisher":"European Mathematical Society","language":[{"iso":"eng"}],"article_processing_charge":"No","date_published":"2016-01-01T00:00:00Z","author":[{"first_name":"Richard","full_name":"Froese, Richard","last_name":"Froese"},{"last_name":"Lee","full_name":"Lee, Darrick","first_name":"Darrick"},{"first_name":"Christian","full_name":"Sadel, Christian","orcid":"0000-0001-8255-3968","last_name":"Sadel","id":"4760E9F8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Spitzer, Wolfgang","first_name":"Wolfgang","last_name":"Spitzer"},{"last_name":"Stolz","full_name":"Stolz, Günter","first_name":"Günter"}],"page":"557 - 600"},{"abstract":[{"text":"Sexual dimorphism in resource allocation is expected to change during the life cycle of dioecious plants because of temporal differences between the sexes in reproductive investment. Given the potential for sex-specific differences in reproductive costs, resource availability may contribute to variation in reproductive allocation in females and males. Here, we used Rumex hastatulus, a dioecious, wind-pollinated annual plant, to investigate whether sexual dimorphism varies with life-history stage and nutrient availability, and determine whether allocation patterns differ depending on reproductive commitment. To examine if the costs of reproduction varied between the sexes, reproduction was either allowed or prevented through bud removal, and biomass allocation was measured at maturity. In a second experiment to assess variation in sexual dimorphism across the life cycle, and whether this varied with resource availability, plants were grown in high and low nutrients and allocation to roots, aboveground vegetative growth and reproduction were measured at three developmental stages. Males prevented from reproducing compensated with increased above- and belowground allocation to a much larger degree than females, suggesting that male reproductive costs reduce vegetative growth. The proportional allocation to roots, reproductive structures and aboveground vegetative growth varied between the sexes and among life-cycle stages, but not with nutrient treatment. Females allocated proportionally more resources to roots than males at peak flowering, but this pattern was reversed at reproductive maturity under low-nutrient conditions. Our study illustrates the importance of temporal dynamics in sex-specific resource allocation and provides support for high male reproductive costs in wind-pollinated plants.","lang":"eng"}],"type":"journal_article","day":"01","quality_controlled":"1","publication_status":"published","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2016","month":"01","oa_version":"None","publication":"Plant Biology","doi":"10.1111/plb.12336","citation":{"apa":"Teitel, Z., Pickup, M., Field, D., &#38; Barrett, S. (2016). The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant. <i>Plant Biology</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/plb.12336\">https://doi.org/10.1111/plb.12336</a>","chicago":"Teitel, Zachary, Melinda Pickup, David Field, and Spencer Barrett. “The Dynamics of Resource Allocation and Costs of Reproduction in a Sexually Dimorphic, Wind-Pollinated Dioecious Plant.” <i>Plant Biology</i>. Wiley-Blackwell, 2016. <a href=\"https://doi.org/10.1111/plb.12336\">https://doi.org/10.1111/plb.12336</a>.","mla":"Teitel, Zachary, et al. “The Dynamics of Resource Allocation and Costs of Reproduction in a Sexually Dimorphic, Wind-Pollinated Dioecious Plant.” <i>Plant Biology</i>, vol. 18, no. 1, Wiley-Blackwell, 2016, pp. 98–103, doi:<a href=\"https://doi.org/10.1111/plb.12336\">10.1111/plb.12336</a>.","short":"Z. Teitel, M. Pickup, D. Field, S. Barrett, Plant Biology 18 (2016) 98–103.","ieee":"Z. Teitel, M. Pickup, D. Field, and S. Barrett, “The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant,” <i>Plant Biology</i>, vol. 18, no. 1. Wiley-Blackwell, pp. 98–103, 2016.","ama":"Teitel Z, Pickup M, Field D, Barrett S. The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant. <i>Plant Biology</i>. 2016;18(1):98-103. doi:<a href=\"https://doi.org/10.1111/plb.12336\">10.1111/plb.12336</a>","ista":"Teitel Z, Pickup M, Field D, Barrett S. 2016. The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant. Plant Biology. 18(1), 98–103."},"title":"The dynamics of resource allocation and costs of reproduction in a sexually dimorphic, wind-pollinated dioecious plant","external_id":{"isi":["000369975700011"]},"status":"public","department":[{"_id":"NiBa"}],"intvolume":"        18","publist_id":"6110","volume":18,"date_updated":"2025-09-22T09:31:49Z","isi":1,"date_created":"2018-12-11T11:50:48Z","issue":"1","_id":"1224","scopus_import":"1","date_published":"2016-01-01T00:00:00Z","page":"98 - 103","author":[{"full_name":"Teitel, Zachary","first_name":"Zachary","last_name":"Teitel"},{"id":"2C78037E-F248-11E8-B48F-1D18A9856A87","last_name":"Pickup","orcid":"0000-0001-6118-0541","full_name":"Pickup, Melinda","first_name":"Melinda"},{"full_name":"Field, David","first_name":"David","id":"419049E2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4014-8478","last_name":"Field"},{"last_name":"Barrett","full_name":"Barrett, Spencer","first_name":"Spencer"}],"publisher":"Wiley-Blackwell","article_processing_charge":"No","language":[{"iso":"eng"}]},{"publication_status":"published","year":"2016","month":"08","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"11","quality_controlled":"1","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"1647"}]},"abstract":[{"lang":"eng","text":"At Crypto 2015 Fuchsbauer, Hanser and Slamanig (FHS) presented the first standard-model construction of efficient roundoptimal blind signatures that does not require complexity leveraging. It is conceptually simple and builds on the primitive of structure-preserving signatures on equivalence classes (SPS-EQ). FHS prove the unforgeability of their scheme assuming EUF-CMA security of the SPS-EQ scheme and hardness of a version of the DH inversion problem. Blindness under adversarially chosen keys is proven under an interactive variant of the DDH assumption. We propose a variant of their scheme whose blindness can be proven under a non-interactive assumption, namely a variant of the bilinear DDH assumption. We moreover prove its unforgeability assuming only unforgeability of the underlying SPS-EQ but no additional assumptions as needed for the FHS scheme."}],"type":"conference","oa_version":"Submitted Version","department":[{"_id":"KrPi"}],"external_id":{"isi":["000389516500021"]},"title":"Practical round-optimal blind signatures in the standard model from weaker assumptions","status":"public","ec_funded":1,"doi":"10.1007/978-3-319-44618-9_21","citation":{"chicago":"Fuchsbauer, Georg, Christian Hanser, Chethan Kamath Hosdurg, and Daniel Slamanig. “Practical Round-Optimal Blind Signatures in the Standard Model from Weaker Assumptions,” 9841:391–408. Springer, 2016. <a href=\"https://doi.org/10.1007/978-3-319-44618-9_21\">https://doi.org/10.1007/978-3-319-44618-9_21</a>.","mla":"Fuchsbauer, Georg, et al. <i>Practical Round-Optimal Blind Signatures in the Standard Model from Weaker Assumptions</i>. Vol. 9841, Springer, 2016, pp. 391–408, doi:<a href=\"https://doi.org/10.1007/978-3-319-44618-9_21\">10.1007/978-3-319-44618-9_21</a>.","apa":"Fuchsbauer, G., Hanser, C., Kamath Hosdurg, C., &#38; Slamanig, D. (2016). Practical round-optimal blind signatures in the standard model from weaker assumptions (Vol. 9841, pp. 391–408). Presented at the SCN: Security and Cryptography for Networks, Amalfi, Italy: Springer. <a href=\"https://doi.org/10.1007/978-3-319-44618-9_21\">https://doi.org/10.1007/978-3-319-44618-9_21</a>","ista":"Fuchsbauer G, Hanser C, Kamath Hosdurg C, Slamanig D. 2016. Practical round-optimal blind signatures in the standard model from weaker assumptions. SCN: Security and Cryptography for Networks, LNCS, vol. 9841, 391–408.","ama":"Fuchsbauer G, Hanser C, Kamath Hosdurg C, Slamanig D. Practical round-optimal blind signatures in the standard model from weaker assumptions. In: Vol 9841. Springer; 2016:391-408. doi:<a href=\"https://doi.org/10.1007/978-3-319-44618-9_21\">10.1007/978-3-319-44618-9_21</a>","ieee":"G. Fuchsbauer, C. Hanser, C. Kamath Hosdurg, and D. Slamanig, “Practical round-optimal blind signatures in the standard model from weaker assumptions,” presented at the SCN: Security and Cryptography for Networks, Amalfi, Italy, 2016, vol. 9841, pp. 391–408.","short":"G. Fuchsbauer, C. Hanser, C. Kamath Hosdurg, D. Slamanig, in:, Springer, 2016, pp. 391–408."},"publist_id":"6109","volume":9841,"oa":1,"date_updated":"2025-09-23T09:53:45Z","intvolume":"      9841","main_file_link":[{"url":"https://eprint.iacr.org/2016/662","open_access":"1"}],"isi":1,"date_created":"2018-12-11T11:50:49Z","scopus_import":"1","project":[{"call_identifier":"FP7","name":"Provable Security for Physical Cryptography","_id":"258C570E-B435-11E9-9278-68D0E5697425","grant_number":"259668"},{"_id":"258AA5B2-B435-11E9-9278-68D0E5697425","name":"Teaching Old Crypto New Tricks","call_identifier":"H2020","grant_number":"682815"}],"alternative_title":["LNCS"],"_id":"1225","publisher":"Springer","article_processing_charge":"No","language":[{"iso":"eng"}],"date_published":"2016-08-11T00:00:00Z","conference":{"start_date":"2016-08-31","end_date":"2016-09-02","location":"Amalfi, Italy","name":"SCN: Security and Cryptography for Networks"},"page":"391 - 408","author":[{"first_name":"Georg","full_name":"Fuchsbauer, Georg","last_name":"Fuchsbauer","id":"46B4C3EE-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Christian","full_name":"Hanser, Christian","last_name":"Hanser"},{"last_name":"Kamath Hosdurg","id":"4BD3F30E-F248-11E8-B48F-1D18A9856A87","first_name":"Chethan","full_name":"Kamath Hosdurg, Chethan"},{"full_name":"Slamanig, Daniel","first_name":"Daniel","last_name":"Slamanig"}]},{"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5164932/"}],"isi":1,"issue":"7625","date_created":"2018-12-11T11:50:49Z","scopus_import":"1","project":[{"name":"Atomic-Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes","_id":"2593EBD6-B435-11E9-9278-68D0E5697425"},{"_id":"2590DB08-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Atomic Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes","grant_number":"701309"}],"_id":"1226","publisher":"Nature Publishing Group","language":[{"iso":"eng"}],"article_processing_charge":"No","date_published":"2016-10-20T00:00:00Z","author":[{"full_name":"Fiedorczuk, Karol","first_name":"Karol","id":"5BFF67CE-02D1-11E9-B11A-A5A4D7DFFFD0","last_name":"Fiedorczuk"},{"first_name":"James A","full_name":"Letts, James A","last_name":"Letts","orcid":"0000-0002-9864-3586","id":"322DA418-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Gianluca","full_name":"Degliesposti, Gianluca","last_name":"Degliesposti"},{"last_name":"Kaszuba","id":"3FDF9472-F248-11E8-B48F-1D18A9856A87","first_name":"Karol","full_name":"Kaszuba, Karol"},{"first_name":"Mark","full_name":"Skehel, Mark","last_name":"Skehel"},{"id":"338D39FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0977-7989","last_name":"Sazanov","full_name":"Sazanov, Leonid A","first_name":"Leonid A"}],"page":"406 - 410","publication_status":"published","month":"10","year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"20","quality_controlled":"1","abstract":[{"lang":"eng","text":"Mitochondrial complex I (also known as NADH:ubiquinone oxidoreductase) contributes to cellular energy production by transferring electrons from NADH to ubiquinone coupled to proton translocation across the membrane. It is the largest protein assembly of the respiratory chain with a total mass of 970 kilodaltons. Here we present a nearly complete atomic structure of ovine (Ovis aries) mitochondrial complex I at 3.9 Å resolution, solved by cryo-electron microscopy with cross-linking and mass-spectrometry mapping experiments. All 14 conserved core subunits and 31 mitochondria-specific supernumerary subunits are resolved within the L-shaped molecule. The hydrophilic matrix arm comprises flavin mononucleotide and 8 iron-sulfur clusters involved in electron transfer, and the membrane arm contains 78 transmembrane helices, mostly contributed by antiporter-like subunits involved in proton translocation. Supernumerary subunits form an interlinked, stabilizing shell around the conserved core. Tightly bound lipids (including cardiolipins) further stabilize interactions between the hydrophobic subunits. Subunits with possible regulatory roles contain additional cofactors, NADPH and two phosphopantetheine molecules, which are shown to be involved in inter-subunit interactions. We observe two different conformations of the complex, which may be related to the conformationally driven coupling mechanism and to the active-deactive transition of the enzyme. Our structure provides insight into the mechanism, assembly, maturation and dysfunction of mitochondrial complex I, and allows detailed molecular analysis of disease-causing mutations."}],"type":"journal_article","oa_version":"Submitted Version","pmid":1,"department":[{"_id":"LeSa"}],"external_id":{"pmid":["27595392"],"isi":["000386673100044"]},"title":"Atomic structure of the entire mammalian mitochondrial complex i","status":"public","publication":"Nature","ec_funded":1,"citation":{"apa":"Fiedorczuk, K., Letts, J. A., Degliesposti, G., Kaszuba, K., Skehel, M., &#38; Sazanov, L. A. (2016). Atomic structure of the entire mammalian mitochondrial complex i. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature19794\">https://doi.org/10.1038/nature19794</a>","chicago":"Fiedorczuk, Karol, James A Letts, Gianluca Degliesposti, Karol Kaszuba, Mark Skehel, and Leonid A Sazanov. “Atomic Structure of the Entire Mammalian Mitochondrial Complex I.” <i>Nature</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/nature19794\">https://doi.org/10.1038/nature19794</a>.","mla":"Fiedorczuk, Karol, et al. “Atomic Structure of the Entire Mammalian Mitochondrial Complex I.” <i>Nature</i>, vol. 538, no. 7625, Nature Publishing Group, 2016, pp. 406–10, doi:<a href=\"https://doi.org/10.1038/nature19794\">10.1038/nature19794</a>.","ama":"Fiedorczuk K, Letts JA, Degliesposti G, Kaszuba K, Skehel M, Sazanov LA. Atomic structure of the entire mammalian mitochondrial complex i. <i>Nature</i>. 2016;538(7625):406-410. doi:<a href=\"https://doi.org/10.1038/nature19794\">10.1038/nature19794</a>","ista":"Fiedorczuk K, Letts JA, Degliesposti G, Kaszuba K, Skehel M, Sazanov LA. 2016. Atomic structure of the entire mammalian mitochondrial complex i. Nature. 538(7625), 406–410.","short":"K. Fiedorczuk, J.A. Letts, G. Degliesposti, K. Kaszuba, M. Skehel, L.A. Sazanov, Nature 538 (2016) 406–410.","ieee":"K. Fiedorczuk, J. A. Letts, G. Degliesposti, K. Kaszuba, M. Skehel, and L. A. Sazanov, “Atomic structure of the entire mammalian mitochondrial complex i,” <i>Nature</i>, vol. 538, no. 7625. Nature Publishing Group, pp. 406–410, 2016."},"doi":"10.1038/nature19794","oa":1,"publist_id":"6108","volume":538,"date_updated":"2025-09-22T09:29:26Z","article_type":"original","intvolume":"       538"},{"type":"journal_article","abstract":[{"lang":"eng","text":"For any number field we calculate the exact proportion of rational numbers which are everywhere locally a norm but not globally a norm from the number field."}],"acknowledgement":"While working on this paper the first author was supported by ERC grant 306457.","quality_controlled":0,"day":"22","month":"01","year":"2016","publication_status":"published","main_file_link":[{"url":"https://arxiv.org/abs/1411.7775","open_access":"1"}],"date_created":"2018-12-11T11:45:29Z","extern":1,"issue":"2","doi":"10.1112/S0025579315000261","citation":{"apa":"Browning, T. D., &#38; Newton, R. (2016). The proportion of failures of the Hasse norm principle. <i>Mathematika</i>. Cambridge University Press. <a href=\"https://doi.org/10.1112/S0025579315000261\">https://doi.org/10.1112/S0025579315000261</a>","mla":"Browning, Timothy D., and Rachel Newton. “The Proportion of Failures of the Hasse Norm Principle.” <i>Mathematika</i>, vol. 62, no. 2, Cambridge University Press, 2016, pp. 337–47, doi:<a href=\"https://doi.org/10.1112/S0025579315000261\">10.1112/S0025579315000261</a>.","chicago":"Browning, Timothy D, and Rachel Newton. “The Proportion of Failures of the Hasse Norm Principle.” <i>Mathematika</i>. Cambridge University Press, 2016. <a href=\"https://doi.org/10.1112/S0025579315000261\">https://doi.org/10.1112/S0025579315000261</a>.","short":"T.D. Browning, R. Newton, Mathematika 62 (2016) 337–347.","ieee":"T. D. Browning and R. Newton, “The proportion of failures of the Hasse norm principle,” <i>Mathematika</i>, vol. 62, no. 2. Cambridge University Press, pp. 337–347, 2016.","ama":"Browning TD, Newton R. The proportion of failures of the Hasse norm principle. <i>Mathematika</i>. 2016;62(2):337-347. doi:<a href=\"https://doi.org/10.1112/S0025579315000261\">10.1112/S0025579315000261</a>","ista":"Browning TD, Newton R. 2016. The proportion of failures of the Hasse norm principle. Mathematika. 62(2), 337–347."},"_id":"262","publication":"Mathematika","status":"public","title":"The proportion of failures of the Hasse norm principle","intvolume":"        62","page":"337 - 347","author":[{"first_name":"Timothy D","full_name":"Timothy Browning","orcid":"0000-0002-8314-0177","last_name":"Browning","id":"35827D50-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Newton","full_name":"Newton, Rachel","first_name":"Rachel"}],"date_published":"2016-01-22T00:00:00Z","publisher":"Cambridge University Press","date_updated":"2021-01-12T06:58:37Z","volume":62,"publist_id":"7640","oa":1},{"_id":"263","publication":"European Journal of Mathematics","citation":{"apa":"De La Bretèche, R., Browning, T. D., &#38; Salberger, P. (2016). Counting rational points on the Cayley ruled cubic. <i>European Journal of Mathematics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s40879-015-0049-1\">https://doi.org/10.1007/s40879-015-0049-1</a>","chicago":"De La Bretèche, Régis, Timothy D Browning, and Per Salberger. “Counting Rational Points on the Cayley Ruled Cubic.” <i>European Journal of Mathematics</i>. Springer Nature, 2016. <a href=\"https://doi.org/10.1007/s40879-015-0049-1\">https://doi.org/10.1007/s40879-015-0049-1</a>.","mla":"De La Bretèche, Régis, et al. “Counting Rational Points on the Cayley Ruled Cubic.” <i>European Journal of Mathematics</i>, vol. 2, no. 1, Springer Nature, 2016, pp. 55–72, doi:<a href=\"https://doi.org/10.1007/s40879-015-0049-1\">10.1007/s40879-015-0049-1</a>.","ama":"De La Bretèche R, Browning TD, Salberger P. Counting rational points on the Cayley ruled cubic. <i>European Journal of Mathematics</i>. 2016;2(1):55-72. doi:<a href=\"https://doi.org/10.1007/s40879-015-0049-1\">10.1007/s40879-015-0049-1</a>","ista":"De La Bretèche R, Browning TD, Salberger P. 2016. Counting rational points on the Cayley ruled cubic. European Journal of Mathematics. 2(1), 55–72.","short":"R. De La Bretèche, T.D. Browning, P. Salberger, European Journal of Mathematics 2 (2016) 55–72.","ieee":"R. De La Bretèche, T. D. Browning, and P. Salberger, “Counting rational points on the Cayley ruled cubic,” <i>European Journal of Mathematics</i>, vol. 2, no. 1. Springer Nature, pp. 55–72, 2016."},"doi":"10.1007/s40879-015-0049-1","title":"Counting rational points on the Cayley ruled cubic","status":"public","date_published":"2016-03-01T00:00:00Z","author":[{"first_name":"Régis","full_name":"de la Bretèche, Régis","last_name":"De La Bretèche"},{"id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177","last_name":"Browning","full_name":"Timothy Browning","first_name":"Timothy D"},{"first_name":"Per","full_name":"Salberger, Per","last_name":"Salberger"}],"page":"55 - 72","intvolume":"         2","volume":2,"oa":1,"publist_id":"7639","date_updated":"2021-01-12T06:58:41Z","publisher":"Springer Nature","day":"01","quality_controlled":0,"acknowledgement":"While working on this paper the first author was supported by an IUF Junior and the second author was supported by ERC grant 306457. ","abstract":[{"lang":"eng","text":"We count rational points of bounded height on the Cayley ruled cubic surface and interpret the result in the context of general conjectures due to Batyrev and Tschinkel."}],"type":"journal_article","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1410.3855"}],"publication_status":"published","year":"2016","month":"03","date_created":"2018-12-11T11:45:30Z","issue":"1","extern":1},{"main_file_link":[{"url":"https://arxiv.org/abs/1506.01817","open_access":"1"}],"year":"2016","month":"07","publication_status":"published","quality_controlled":0,"day":"01","type":"journal_article","acknowledgement":"While working on this paper the second author was supported by ERC grant 306457.","abstract":[{"text":"Given a family of varieties over a number field, we determine conditions under which there is a Brauer-Manin obstruction to weak approximation for 100% of the fibres which are everywhere locally soluble.","lang":"eng"}],"issue":"7","extern":1,"date_created":"2018-12-11T11:45:30Z","status":"public","title":"Failures of weak approximation in families","doi":"10.1112/S0010437X16007405","citation":{"chicago":"Bright, Maritn, Timothy D Browning, and Daniel Loughran. “Failures of Weak Approximation in Families.” <i>Compositio Mathematica</i>. Cambridge University Press, 2016. <a href=\"https://doi.org/10.1112/S0010437X16007405\">https://doi.org/10.1112/S0010437X16007405</a>.","mla":"Bright, Maritn, et al. “Failures of Weak Approximation in Families.” <i>Compositio Mathematica</i>, vol. 152, no. 7, Cambridge University Press, 2016, pp. 1435–75, doi:<a href=\"https://doi.org/10.1112/S0010437X16007405\">10.1112/S0010437X16007405</a>.","apa":"Bright, M., Browning, T. D., &#38; Loughran, D. (2016). Failures of weak approximation in families. <i>Compositio Mathematica</i>. Cambridge University Press. <a href=\"https://doi.org/10.1112/S0010437X16007405\">https://doi.org/10.1112/S0010437X16007405</a>","ieee":"M. Bright, T. D. Browning, and D. Loughran, “Failures of weak approximation in families,” <i>Compositio Mathematica</i>, vol. 152, no. 7. Cambridge University Press, pp. 1435–1475, 2016.","short":"M. Bright, T.D. Browning, D. Loughran, Compositio Mathematica 152 (2016) 1435–1475.","ista":"Bright M, Browning TD, Loughran D. 2016. Failures of weak approximation in families. Compositio Mathematica. 152(7), 1435–1475.","ama":"Bright M, Browning TD, Loughran D. Failures of weak approximation in families. <i>Compositio Mathematica</i>. 2016;152(7):1435-1475. doi:<a href=\"https://doi.org/10.1112/S0010437X16007405\">10.1112/S0010437X16007405</a>"},"publication":"Compositio Mathematica","_id":"264","date_updated":"2021-01-12T06:58:45Z","volume":152,"publist_id":"7638","oa":1,"publisher":"Cambridge University Press","page":"1435 - 1475","author":[{"first_name":"Maritn","full_name":"Bright, Maritn J","last_name":"Bright"},{"id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177","last_name":"Browning","full_name":"Timothy Browning","first_name":"Timothy D"},{"full_name":"Loughran, Daniel","first_name":"Daniel","last_name":"Loughran"}],"date_published":"2016-07-01T00:00:00Z","intvolume":"       152"},{"_id":"13385","scopus_import":"1","date_published":"2016-10-19T00:00:00Z","author":[{"full_name":"Kundu, Pintu K.","first_name":"Pintu K.","last_name":"Kundu"},{"first_name":"Sanjib","full_name":"Das, Sanjib","last_name":"Das"},{"last_name":"Ahrens","first_name":"Johannes","full_name":"Ahrens, Johannes"},{"last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","full_name":"Klajn, Rafal"}],"page":"19280-19286","publisher":"Royal Society of Chemistry","language":[{"iso":"eng"}],"article_processing_charge":"No","publication_identifier":{"eissn":["2040-3372"],"issn":["2040-3364"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1039/C6NR05959G"}],"date_created":"2023-08-01T09:42:22Z","extern":"1","issue":"46","publication":"Nanoscale","doi":"10.1039/c6nr05959g","citation":{"chicago":"Kundu, Pintu K., Sanjib Das, Johannes Ahrens, and Rafal Klajn. “Controlling the Lifetimes of Dynamic Nanoparticle Aggregates by Spiropyran Functionalization.” <i>Nanoscale</i>. Royal Society of Chemistry, 2016. <a href=\"https://doi.org/10.1039/c6nr05959g\">https://doi.org/10.1039/c6nr05959g</a>.","mla":"Kundu, Pintu K., et al. “Controlling the Lifetimes of Dynamic Nanoparticle Aggregates by Spiropyran Functionalization.” <i>Nanoscale</i>, vol. 8, no. 46, Royal Society of Chemistry, 2016, pp. 19280–86, doi:<a href=\"https://doi.org/10.1039/c6nr05959g\">10.1039/c6nr05959g</a>.","apa":"Kundu, P. K., Das, S., Ahrens, J., &#38; Klajn, R. (2016). Controlling the lifetimes of dynamic nanoparticle aggregates by spiropyran functionalization. <i>Nanoscale</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c6nr05959g\">https://doi.org/10.1039/c6nr05959g</a>","ista":"Kundu PK, Das S, Ahrens J, Klajn R. 2016. Controlling the lifetimes of dynamic nanoparticle aggregates by spiropyran functionalization. Nanoscale. 8(46), 19280–19286.","ama":"Kundu PK, Das S, Ahrens J, Klajn R. Controlling the lifetimes of dynamic nanoparticle aggregates by spiropyran functionalization. <i>Nanoscale</i>. 2016;8(46):19280-19286. doi:<a href=\"https://doi.org/10.1039/c6nr05959g\">10.1039/c6nr05959g</a>","ieee":"P. K. Kundu, S. Das, J. Ahrens, and R. Klajn, “Controlling the lifetimes of dynamic nanoparticle aggregates by spiropyran functionalization,” <i>Nanoscale</i>, vol. 8, no. 46. Royal Society of Chemistry, pp. 19280–19286, 2016.","short":"P.K. Kundu, S. Das, J. Ahrens, R. Klajn, Nanoscale 8 (2016) 19280–19286."},"external_id":{"pmid":["27830865"]},"title":"Controlling the lifetimes of dynamic nanoparticle aggregates by spiropyran functionalization","status":"public","intvolume":"         8","article_type":"original","volume":8,"oa":1,"date_updated":"2024-10-14T12:16:21Z","abstract":[{"lang":"eng","text":"Novel light-responsive nanoparticles were synthesized by decorating the surfaces of gold and silver nanoparticles with a nitrospiropyran molecular photoswitch. Upon exposure to UV light in nonpolar solvents, these nanoparticles self-assembled to afford spherical aggregates, which disassembled rapidly when the UV stimulus was turned off. The sizes of these aggregates depended on the nanoparticle concentration, and their lifetimes could be controlled by adjusting the surface concentration of nitrospiropyran on the nanoparticles. The conformational flexibility of nitrospiropyran, which was altered by modifying the structure of the background ligand, had a profound impact on the self-assembly process. By coating the nanoparticles with a spiropyran lacking the nitro group, a conceptually different self-assembly system, relying on a reversible proton transfer, was realized. The resulting particles spontaneously (in the dark) assembled into aggregates that could be readily disassembled upon exposure to blue light."}],"type":"journal_article","day":"19","quality_controlled":"1","publication_status":"published","keyword":["General Materials Science"],"month":"10","year":"2016","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","pmid":1,"oa_version":"Published Version"},{"pmid":1,"oa_version":"None","type":"journal_article","abstract":[{"lang":"eng","text":"Azobenzenealkanethiols in self-assembled monolayers (SAMs) on Au(111) exhibit reversible trans–cis photoisomerization when diluted with alkanethiol spacers. Using these mixed SAMs, we show switching of the linear optical and second-harmonic response. The effective switching of these surface optical properties relies on a reasonably large cross section and a high photoisomerization yield as well as a long lifetime of the metastable cis isomer. We quantified the switching process by X-ray absorption spectroscopy. The cross sections for the trans–cis and cis–trans photoisomerization with 365 and 455 nm light, respectively, are 1 order of magnitude smaller than in solution. In vacuum, the 365 nm photostationary state comprises 50–74% of the molecules in the cis form, limited by their rapid thermal isomerization back to the trans state. In contrast, the 455 nm photostationary state contains nearly 100% trans-azobenzene. We determined time constants for the thermal cis–trans isomerization of only a few minutes in vacuum and in a dry nitrogen atmosphere but of more than 1 day in ambient air. Our results suggest that adventitious water adsorbed on the surface of the SAM stabilizes the polar cis configuration of azobenzene under ambient conditions. The back reaction rate constants differing by 2 orders of magnitude underline the huge influence of the environment and, accordingly, its importance when comparing various experiments."}],"quality_controlled":"1","day":"25","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"10","year":"2016","keyword":["Electrochemistry","Spectroscopy","Surfaces and Interfaces","Condensed Matter Physics","General Materials Science"],"publication_status":"published","intvolume":"        32","article_type":"original","date_updated":"2023-08-07T12:27:06Z","volume":32,"citation":{"chicago":"Moldt, Thomas, Daniel Przyrembel, Michael Schulze, Wibke Bronsch, Larissa Boie, Daniel Brete, Cornelius Gahl, Rafal Klajn, Petra Tegeder, and Martin Weinelt. “Differing Isomerization Kinetics of Azobenzene-Functionalized Self-Assembled Monolayers in Ambient Air and in Vacuum.” <i>Langmuir</i>. American Chemical Society, 2016. <a href=\"https://doi.org/10.1021/acs.langmuir.6b01690\">https://doi.org/10.1021/acs.langmuir.6b01690</a>.","mla":"Moldt, Thomas, et al. “Differing Isomerization Kinetics of Azobenzene-Functionalized Self-Assembled Monolayers in Ambient Air and in Vacuum.” <i>Langmuir</i>, vol. 32, no. 42, American Chemical Society, 2016, pp. 10795–801, doi:<a href=\"https://doi.org/10.1021/acs.langmuir.6b01690\">10.1021/acs.langmuir.6b01690</a>.","apa":"Moldt, T., Przyrembel, D., Schulze, M., Bronsch, W., Boie, L., Brete, D., … Weinelt, M. (2016). Differing isomerization kinetics of azobenzene-functionalized self-assembled monolayers in ambient air and in vacuum. <i>Langmuir</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.langmuir.6b01690\">https://doi.org/10.1021/acs.langmuir.6b01690</a>","ieee":"T. Moldt <i>et al.</i>, “Differing isomerization kinetics of azobenzene-functionalized self-assembled monolayers in ambient air and in vacuum,” <i>Langmuir</i>, vol. 32, no. 42. American Chemical Society, pp. 10795–10801, 2016.","short":"T. Moldt, D. Przyrembel, M. Schulze, W. Bronsch, L. Boie, D. Brete, C. Gahl, R. Klajn, P. Tegeder, M. Weinelt, Langmuir 32 (2016) 10795–10801.","ista":"Moldt T, Przyrembel D, Schulze M, Bronsch W, Boie L, Brete D, Gahl C, Klajn R, Tegeder P, Weinelt M. 2016. Differing isomerization kinetics of azobenzene-functionalized self-assembled monolayers in ambient air and in vacuum. Langmuir. 32(42), 10795–10801.","ama":"Moldt T, Przyrembel D, Schulze M, et al. Differing isomerization kinetics of azobenzene-functionalized self-assembled monolayers in ambient air and in vacuum. <i>Langmuir</i>. 2016;32(42):10795-10801. doi:<a href=\"https://doi.org/10.1021/acs.langmuir.6b01690\">10.1021/acs.langmuir.6b01690</a>"},"doi":"10.1021/acs.langmuir.6b01690","publication":"Langmuir","status":"public","external_id":{"pmid":["27681851"]},"title":"Differing isomerization kinetics of azobenzene-functionalized self-assembled monolayers in ambient air and in vacuum","date_created":"2023-08-01T09:42:37Z","extern":"1","issue":"42","publication_identifier":{"eissn":["1520-5827"],"issn":["0743-7463"]},"author":[{"first_name":"Thomas","full_name":"Moldt, Thomas","last_name":"Moldt"},{"first_name":"Daniel","full_name":"Przyrembel, Daniel","last_name":"Przyrembel"},{"last_name":"Schulze","first_name":"Michael","full_name":"Schulze, Michael"},{"first_name":"Wibke","full_name":"Bronsch, Wibke","last_name":"Bronsch"},{"first_name":"Larissa","full_name":"Boie, Larissa","last_name":"Boie"},{"first_name":"Daniel","full_name":"Brete, Daniel","last_name":"Brete"},{"full_name":"Gahl, Cornelius","first_name":"Cornelius","last_name":"Gahl"},{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","last_name":"Klajn","full_name":"Klajn, Rafal","first_name":"Rafal"},{"full_name":"Tegeder, Petra","first_name":"Petra","last_name":"Tegeder"},{"first_name":"Martin","full_name":"Weinelt, Martin","last_name":"Weinelt"}],"page":"10795-10801","date_published":"2016-10-25T00:00:00Z","article_processing_charge":"No","language":[{"iso":"eng"}],"publisher":"American Chemical Society","_id":"13386","scopus_import":"1"},{"_id":"13387","scopus_import":"1","date_published":"2016-09-01T00:00:00Z","author":[{"last_name":"Samanta","full_name":"Samanta, Dipak","first_name":"Dipak"},{"last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","full_name":"Klajn, Rafal"}],"page":"1373-1377","publisher":"Wiley","article_processing_charge":"No","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["2195-1071"]},"date_created":"2023-08-01T09:42:49Z","issue":"9","extern":"1","publication":"Advanced Optical Materials","citation":{"ieee":"D. Samanta and R. Klajn, “Aqueous light-controlled self-assembly of nanoparticles,” <i>Advanced Optical Materials</i>, vol. 4, no. 9. Wiley, pp. 1373–1377, 2016.","short":"D. Samanta, R. Klajn, Advanced Optical Materials 4 (2016) 1373–1377.","ista":"Samanta D, Klajn R. 2016. Aqueous light-controlled self-assembly of nanoparticles. Advanced Optical Materials. 4(9), 1373–1377.","ama":"Samanta D, Klajn R. Aqueous light-controlled self-assembly of nanoparticles. <i>Advanced Optical Materials</i>. 2016;4(9):1373-1377. doi:<a href=\"https://doi.org/10.1002/adom.201600364\">10.1002/adom.201600364</a>","mla":"Samanta, Dipak, and Rafal Klajn. “Aqueous Light-Controlled Self-Assembly of Nanoparticles.” <i>Advanced Optical Materials</i>, vol. 4, no. 9, Wiley, 2016, pp. 1373–77, doi:<a href=\"https://doi.org/10.1002/adom.201600364\">10.1002/adom.201600364</a>.","chicago":"Samanta, Dipak, and Rafal Klajn. “Aqueous Light-Controlled Self-Assembly of Nanoparticles.” <i>Advanced Optical Materials</i>. Wiley, 2016. <a href=\"https://doi.org/10.1002/adom.201600364\">https://doi.org/10.1002/adom.201600364</a>.","apa":"Samanta, D., &#38; Klajn, R. (2016). Aqueous light-controlled self-assembly of nanoparticles. <i>Advanced Optical Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adom.201600364\">https://doi.org/10.1002/adom.201600364</a>"},"doi":"10.1002/adom.201600364","title":"Aqueous light-controlled self-assembly of nanoparticles","status":"public","intvolume":"         4","volume":4,"date_updated":"2024-10-14T12:16:34Z","article_type":"original","day":"01","quality_controlled":"1","abstract":[{"text":"Come on in, the water's fine! Non-photoresponsive nanoparticles can be reversibly assembled using light by placing them in an aqueous solution of a photo­acid. Upon exposure to visible light, the photoacid reduces the pH of the solution, which induces attractive interactions between the nanoparticles. In the dark, the resulting nanoparticle aggregates spontaneously disassemble. The process can be repeated many times.","lang":"eng"}],"type":"journal_article","publication_status":"published","keyword":["Atomic and Molecular Physics","and Optics","Electronic","Optical and Magnetic Materials"],"year":"2016","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"09","oa_version":"None"},{"_id":"13388","author":[{"full_name":"Udayabhaskararao, T.","first_name":"T.","last_name":"Udayabhaskararao"},{"last_name":"Kundu","first_name":"Pintu K.","full_name":"Kundu, Pintu K."},{"last_name":"Ahrens","full_name":"Ahrens, Johannes","first_name":"Johannes"},{"first_name":"Rafal","full_name":"Klajn, Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"}],"page":"1711-1711","date_published":"2016-06-17T00:00:00Z","language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"Wiley","publication_identifier":{"eissn":["1439-7641"],"issn":["1439-4235"]},"main_file_link":[{"url":"https://doi.org/10.1002/cphc.201600480","open_access":"1"}],"date_created":"2023-08-01T09:43:07Z","extern":"1","issue":"12","doi":"10.1002/cphc.201600480","citation":{"mla":"Udayabhaskararao, T., et al. “Inside Cover: Reversible Photoisomerization of Spiropyran on the Surfaces of Au25 Nanoclusters (ChemPhysChem 12/2016).” <i>ChemPhysChem</i>, vol. 17, no. 12, Wiley, 2016, pp. 1711–1711, doi:<a href=\"https://doi.org/10.1002/cphc.201600480\">10.1002/cphc.201600480</a>.","chicago":"Udayabhaskararao, T., Pintu K. Kundu, Johannes Ahrens, and Rafal Klajn. <i>Inside Cover: Reversible Photoisomerization of Spiropyran on the Surfaces of Au25 Nanoclusters (ChemPhysChem 12/2016)</i>. <i>ChemPhysChem</i>. Vol. 17. Wiley, 2016. <a href=\"https://doi.org/10.1002/cphc.201600480\">https://doi.org/10.1002/cphc.201600480</a>.","apa":"Udayabhaskararao, T., Kundu, P. K., Ahrens, J., &#38; Klajn, R. (2016). <i>Inside cover: Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters (ChemPhysChem 12/2016)</i>. <i>ChemPhysChem</i> (Vol. 17, pp. 1711–1711). Wiley. <a href=\"https://doi.org/10.1002/cphc.201600480\">https://doi.org/10.1002/cphc.201600480</a>","ieee":"T. Udayabhaskararao, P. K. Kundu, J. Ahrens, and R. Klajn, <i>Inside cover: Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters (ChemPhysChem 12/2016)</i>, vol. 17, no. 12. Wiley, 2016, pp. 1711–1711.","short":"T. Udayabhaskararao, P.K. Kundu, J. Ahrens, R. Klajn, Inside Cover: Reversible Photoisomerization of Spiropyran on the Surfaces of Au25 Nanoclusters (ChemPhysChem 12/2016), Wiley, 2016.","ista":"Udayabhaskararao T, Kundu PK, Ahrens J, Klajn R. 2016. Inside cover: Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters (ChemPhysChem 12/2016), Wiley,p.","ama":"Udayabhaskararao T, Kundu PK, Ahrens J, Klajn R. <i>Inside Cover: Reversible Photoisomerization of Spiropyran on the Surfaces of Au25 Nanoclusters (ChemPhysChem 12/2016)</i>. Vol 17. Wiley; 2016:1711-1711. doi:<a href=\"https://doi.org/10.1002/cphc.201600480\">10.1002/cphc.201600480</a>"},"publication":"ChemPhysChem","status":"public","title":"Inside cover: Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters (ChemPhysChem 12/2016)","intvolume":"        17","date_updated":"2024-10-14T12:16:44Z","oa":1,"volume":17,"type":"other_academic_publication","abstract":[{"lang":"eng","text":"The Inside Cover picture illustrates the fluorescent properties of a gold nanocluster functionalized with several copies of a red-emitting merocyanine (image by Ella Marushchenko). The red fluorescence can be turned on and off reversibly by using an external stimulus."}],"quality_controlled":"1","day":"17","month":"06","year":"2016","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["Physical and Theoretical Chemistry","Atomic and Molecular Physics","and Optics"],"publication_status":"published","oa_version":"Published Version"},{"author":[{"last_name":"Udayabhaskararao","first_name":"T.","full_name":"Udayabhaskararao, T."},{"full_name":"Kundu, Pintu K.","first_name":"Pintu K.","last_name":"Kundu"},{"full_name":"Ahrens, Johannes","first_name":"Johannes","last_name":"Ahrens"},{"first_name":"Rafal","full_name":"Klajn, Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"}],"page":"1805-1809","date_published":"2016-06-17T00:00:00Z","language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"Wiley","_id":"13389","scopus_import":"1","date_created":"2023-08-01T09:43:18Z","issue":"12","extern":"1","publication_identifier":{"issn":["1439-4235"],"eissn":["1439-7641"]},"intvolume":"        17","date_updated":"2024-10-14T12:16:54Z","volume":17,"article_type":"original","doi":"10.1002/cphc.201500897","citation":{"apa":"Udayabhaskararao, T., Kundu, P. K., Ahrens, J., &#38; Klajn, R. (2016). Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters. <i>ChemPhysChem</i>. Wiley. <a href=\"https://doi.org/10.1002/cphc.201500897\">https://doi.org/10.1002/cphc.201500897</a>","mla":"Udayabhaskararao, T., et al. “Reversible Photoisomerization of Spiropyran on the Surfaces of Au25 Nanoclusters.” <i>ChemPhysChem</i>, vol. 17, no. 12, Wiley, 2016, pp. 1805–09, doi:<a href=\"https://doi.org/10.1002/cphc.201500897\">10.1002/cphc.201500897</a>.","chicago":"Udayabhaskararao, T., Pintu K. Kundu, Johannes Ahrens, and Rafal Klajn. “Reversible Photoisomerization of Spiropyran on the Surfaces of Au25 Nanoclusters.” <i>ChemPhysChem</i>. Wiley, 2016. <a href=\"https://doi.org/10.1002/cphc.201500897\">https://doi.org/10.1002/cphc.201500897</a>.","ama":"Udayabhaskararao T, Kundu PK, Ahrens J, Klajn R. Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters. <i>ChemPhysChem</i>. 2016;17(12):1805-1809. doi:<a href=\"https://doi.org/10.1002/cphc.201500897\">10.1002/cphc.201500897</a>","ista":"Udayabhaskararao T, Kundu PK, Ahrens J, Klajn R. 2016. Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters. ChemPhysChem. 17(12), 1805–1809.","short":"T. Udayabhaskararao, P.K. Kundu, J. Ahrens, R. Klajn, ChemPhysChem 17 (2016) 1805–1809.","ieee":"T. Udayabhaskararao, P. K. Kundu, J. Ahrens, and R. Klajn, “Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters,” <i>ChemPhysChem</i>, vol. 17, no. 12. Wiley, pp. 1805–1809, 2016."},"publication":"ChemPhysChem","status":"public","external_id":{"pmid":["26593975"]},"title":"Reversible photoisomerization of spiropyran on the surfaces of Au25 nanoclusters","oa_version":"None","pmid":1,"quality_controlled":"1","day":"17","type":"journal_article","abstract":[{"text":"Au25 nanoclusters functionalized with a spiropyran molecular switch are synthesized via a ligand-exchange reaction at low temperature. The resulting nanoclusters are characterized by optical and NMR spectroscopies as well as by mass spectrometry. Spiropyran bound to nanoclusters isomerizes in a reversible fashion when exposed to UV and visible light, and its properties are similar to those of free spiropyran molecules in solution. The reversible photoisomerization entails the modulation of fluorescence as well as the light-controlled self-assembly of nanoclusters.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"06","year":"2016","publication_status":"published","keyword":["Physical and Theoretical Chemistry","Atomic and Molecular Physics","and Optics"]}]