[{"scopus_import":"1","ec_funded":1,"issue":"8","status":"public","isi":1,"date_updated":"2026-04-16T09:55:16Z","publication":"Journal of Physics: Condensed Matter","date_published":"2017-01-16T00:00:00Z","year":"2017","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","article_number":"085604","intvolume":"        29","citation":{"chicago":"Wysokiński, Marcin, and Jan Kaczmarczyk. “Unconventional Superconductivity in Generalized Hubbard Model Role of Electron–Hole Symmetry Breaking Terms.” <i>Journal of Physics: Condensed Matter</i>. IOP Publishing, 2017. <a href=\"https://doi.org/10.1088/1361-648X/aa532f\">https://doi.org/10.1088/1361-648X/aa532f</a>.","ama":"Wysokiński M, Kaczmarczyk J. Unconventional superconductivity in generalized Hubbard model role of electron–hole symmetry breaking terms. <i>Journal of Physics: Condensed Matter</i>. 2017;29(8). doi:<a href=\"https://doi.org/10.1088/1361-648X/aa532f\">10.1088/1361-648X/aa532f</a>","ista":"Wysokiński M, Kaczmarczyk J. 2017. Unconventional superconductivity in generalized Hubbard model role of electron–hole symmetry breaking terms. Journal of Physics: Condensed Matter. 29(8), 085604.","apa":"Wysokiński, M., &#38; Kaczmarczyk, J. (2017). Unconventional superconductivity in generalized Hubbard model role of electron–hole symmetry breaking terms. <i>Journal of Physics: Condensed Matter</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1361-648X/aa532f\">https://doi.org/10.1088/1361-648X/aa532f</a>","mla":"Wysokiński, Marcin, and Jan Kaczmarczyk. “Unconventional Superconductivity in Generalized Hubbard Model Role of Electron–Hole Symmetry Breaking Terms.” <i>Journal of Physics: Condensed Matter</i>, vol. 29, no. 8, 085604, IOP Publishing, 2017, doi:<a href=\"https://doi.org/10.1088/1361-648X/aa532f\">10.1088/1361-648X/aa532f</a>.","short":"M. Wysokiński, J. Kaczmarczyk, Journal of Physics: Condensed Matter 29 (2017).","ieee":"M. Wysokiński and J. Kaczmarczyk, “Unconventional superconductivity in generalized Hubbard model role of electron–hole symmetry breaking terms,” <i>Journal of Physics: Condensed Matter</i>, vol. 29, no. 8. IOP Publishing, 2017."},"day":"16","type":"journal_article","quality_controlled":"1","_id":"1163","language":[{"iso":"eng"}],"abstract":[{"text":"We investigate the effect of the electron-hole (e-h) symmetry breaking on d-wave superconductivity induced by non-local effects of correlations in the generalized Hubbard model. The symmetry breaking is introduced in a two-fold manner: by the next-to-nearest neighbor hopping of electrons and by the charge-bond interaction - the off-diagonal term of the Coulomb potential. Both terms lead to a pronounced asymmetry of the superconducting order parameter. The next-to-nearest neighbor hopping enhances superconductivity for h-doping, while diminishes it for e-doping. The charge-bond interaction alone leads to the opposite effect and, additionally, to the kinetic-energy gain upon condensation in the underdoped regime. With both terms included, with similar amplitudes, the height of the superconducting dome and the critical doping remain in favor of h-doping. The influence of the charge-bond interaction on deviations from symmetry of the shape of the gap at the Fermi surface in the momentum space is briefly discussed.","lang":"eng"}],"external_id":{"isi":["000393955500001"]},"publisher":"IOP Publishing","article_processing_charge":"No","project":[{"name":"International IST Postdoc Fellowship Programme","grant_number":"291734","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"department":[{"_id":"MiLe"}],"month":"01","volume":29,"author":[{"last_name":"Wysokiński","full_name":"Wysokiński, Marcin","first_name":"Marcin"},{"last_name":"Kaczmarczyk","full_name":"Kaczmarczyk, Jan","id":"46C405DE-F248-11E8-B48F-1D18A9856A87","first_name":"Jan","orcid":"0000-0002-1629-3675"}],"doi":"10.1088/1361-648X/aa532f","oa_version":"None","title":"Unconventional superconductivity in generalized Hubbard model role of electron–hole symmetry breaking terms","date_created":"2018-12-11T11:50:29Z","publication_identifier":{"issn":["0953-8984"]},"publist_id":"6194","publication_status":"published"},{"corr_author":"1","article_processing_charge":"No","publisher":"Springer","doi":"10.1007/978-3-662-54580-5_10","oa":1,"pubrep_id":"758","author":[{"orcid":"0000-0001-5588-8287","id":"463C8BC2-F248-11E8-B48F-1D18A9856A87","first_name":"Guy","last_name":"Avni","full_name":"Avni, Guy"},{"first_name":"Shubham","last_name":"Goel","full_name":"Goel, Shubham"},{"full_name":"Henzinger, Thomas A","last_name":"Henzinger","orcid":"0000−0002−2985−7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A"},{"first_name":"Guillermo","full_name":"Rodríguez Navas, Guillermo","last_name":"Rodríguez Navas"}],"volume":10206,"project":[{"_id":"25F5A88A-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"S11402-N23","name":"Moderne Concurrency Paradigms"},{"name":"Formal methods for the design and analysis of complex systems","grant_number":"Z211","_id":"25F42A32-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"}],"department":[{"_id":"ToHe"}],"month":"03","publication_identifier":{"issn":["0302-9743"]},"date_created":"2018-12-11T11:50:14Z","title":"Computing scores of forwarding schemes in switched networks with probabilistic faults","alternative_title":["LNCS"],"oa_version":"Submitted Version","publist_id":"6246","conference":{"location":"Uppsala, Sweden","end_date":"2017-04-29","start_date":"2017-04-22","name":"TACAS: Tools and Algorithms for the Construction and Analysis of Systems"},"publication_status":"published","file":[{"access_level":"open_access","file_size":321800,"date_created":"2018-12-12T10:08:37Z","content_type":"application/pdf","file_name":"IST-2017-758-v1+1_tacas-cr.pdf","date_updated":"2018-12-12T10:08:37Z","relation":"main_file","file_id":"4698","creator":"system"}],"page":"169 - 187","status":"public","scopus_import":"1","file_date_updated":"2018-12-12T10:08:37Z","date_updated":"2026-04-16T09:56:24Z","isi":1,"intvolume":"     10206","year":"2017","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","ddc":["000"],"date_published":"2017-03-31T00:00:00Z","language":[{"iso":"eng"}],"_id":"1116","abstract":[{"text":"Time-triggered switched networks are a deterministic communication infrastructure used by real-time distributed embedded systems. Due to the criticality of the applications running over them, developers need to ensure that end-to-end communication is dependable and predictable. Traditional approaches assume static networks that are not flexible to changes caused by reconfigurations or, more importantly, faults, which are dealt with in the application using redundancy. We adopt the concept of handling faults in the switches from non-real-time networks while maintaining the required predictability. \r\n\r\nWe study a class of forwarding schemes that can handle various types of failures. We consider probabilistic failures. We study a class of forwarding schemes that can handle various types of failures. We consider probabilistic failures. For a given network with a forwarding scheme and a constant ℓ, we compute the {\\em score} of the scheme, namely the probability (induced by faults) that at least ℓ messages arrive on time. We reduce the scoring problem to a reachability problem on a Markov chain with a &quot;product-like&quot; structure. Its special structure allows us to reason about it symbolically, and reduce the scoring problem to #SAT. Our solution is generic and can be adapted to different networks and other contexts. Also, we show the computational complexity of the scoring problem is #P-complete, and we study methods to estimate the score. We evaluate the effectiveness of our techniques with an implementation. ","lang":"eng"}],"external_id":{"isi":["000440733400010"]},"type":"conference","quality_controlled":"1","has_accepted_license":"1","day":"31","citation":{"ista":"Avni G, Goel S, Henzinger TA, Rodríguez Navas G. 2017. Computing scores of forwarding schemes in switched networks with probabilistic faults. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 10206, 169–187.","ama":"Avni G, Goel S, Henzinger TA, Rodríguez Navas G. Computing scores of forwarding schemes in switched networks with probabilistic faults. In: Vol 10206. Springer; 2017:169-187. doi:<a href=\"https://doi.org/10.1007/978-3-662-54580-5_10\">10.1007/978-3-662-54580-5_10</a>","chicago":"Avni, Guy, Shubham Goel, Thomas A Henzinger, and Guillermo Rodríguez Navas. “Computing Scores of Forwarding Schemes in Switched Networks with Probabilistic Faults,” 10206:169–87. Springer, 2017. <a href=\"https://doi.org/10.1007/978-3-662-54580-5_10\">https://doi.org/10.1007/978-3-662-54580-5_10</a>.","ieee":"G. Avni, S. Goel, T. A. Henzinger, and G. Rodríguez Navas, “Computing scores of forwarding schemes in switched networks with probabilistic faults,” presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Uppsala, Sweden, 2017, vol. 10206, pp. 169–187.","short":"G. Avni, S. Goel, T.A. Henzinger, G. Rodríguez Navas, in:, Springer, 2017, pp. 169–187.","mla":"Avni, Guy, et al. <i>Computing Scores of Forwarding Schemes in Switched Networks with Probabilistic Faults</i>. Vol. 10206, Springer, 2017, pp. 169–87, doi:<a href=\"https://doi.org/10.1007/978-3-662-54580-5_10\">10.1007/978-3-662-54580-5_10</a>.","apa":"Avni, G., Goel, S., Henzinger, T. A., &#38; Rodríguez Navas, G. (2017). Computing scores of forwarding schemes in switched networks with probabilistic faults (Vol. 10206, pp. 169–187). Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Uppsala, Sweden: Springer. <a href=\"https://doi.org/10.1007/978-3-662-54580-5_10\">https://doi.org/10.1007/978-3-662-54580-5_10</a>"}},{"issue":"3-4","ec_funded":1,"scopus_import":"1","status":"public","page":"673 - 776","publication":"Probability Theory and Related Fields","date_updated":"2026-04-16T09:55:56Z","isi":1,"file_date_updated":"2020-07-14T12:45:00Z","date_published":"2017-04-01T00:00:00Z","intvolume":"       167","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","ddc":["530"],"year":"2017","citation":{"chicago":"Bao, Zhigang, and László Erdös. “Delocalization for a Class of Random Block Band Matrices.” <i>Probability Theory and Related Fields</i>. Springer, 2017. <a href=\"https://doi.org/10.1007/s00440-015-0692-y\">https://doi.org/10.1007/s00440-015-0692-y</a>.","ista":"Bao Z, Erdös L. 2017. Delocalization for a class of random block band matrices. Probability Theory and Related Fields. 167(3–4), 673–776.","ama":"Bao Z, Erdös L. Delocalization for a class of random block band matrices. <i>Probability Theory and Related Fields</i>. 2017;167(3-4):673-776. doi:<a href=\"https://doi.org/10.1007/s00440-015-0692-y\">10.1007/s00440-015-0692-y</a>","apa":"Bao, Z., &#38; Erdös, L. (2017). Delocalization for a class of random block band matrices. <i>Probability Theory and Related Fields</i>. Springer. <a href=\"https://doi.org/10.1007/s00440-015-0692-y\">https://doi.org/10.1007/s00440-015-0692-y</a>","short":"Z. Bao, L. Erdös, Probability Theory and Related Fields 167 (2017) 673–776.","ieee":"Z. Bao and L. Erdös, “Delocalization for a class of random block band matrices,” <i>Probability Theory and Related Fields</i>, vol. 167, no. 3–4. Springer, pp. 673–776, 2017.","mla":"Bao, Zhigang, and László Erdös. “Delocalization for a Class of Random Block Band Matrices.” <i>Probability Theory and Related Fields</i>, vol. 167, no. 3–4, Springer, 2017, pp. 673–776, doi:<a href=\"https://doi.org/10.1007/s00440-015-0692-y\">10.1007/s00440-015-0692-y</a>."},"day":"01","has_accepted_license":"1","external_id":{"isi":["000398842700004"]},"language":[{"iso":"eng"}],"_id":"1528","abstract":[{"text":"We consider N×N Hermitian random matrices H consisting of blocks of size M≥N6/7. The matrix elements are i.i.d. within the blocks, close to a Gaussian in the four moment matching sense, but their distribution varies from block to block to form a block-band structure, with an essential band width M. We show that the entries of the Green’s function G(z)=(H−z)−1 satisfy the local semicircle law with spectral parameter z=E+iη down to the real axis for any η≫N−1, using a combination of the supersymmetry method inspired by Shcherbina (J Stat Phys 155(3): 466–499, 2014) and the Green’s function comparison strategy. Previous estimates were valid only for η≫M−1. The new estimate also implies that the eigenvectors in the middle of the spectrum are fully delocalized.","lang":"eng"}],"quality_controlled":"1","type":"journal_article","article_processing_charge":"Yes (via OA deal)","corr_author":"1","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"publisher":"Springer","volume":167,"author":[{"full_name":"Bao, Zhigang","last_name":"Bao","orcid":"0000-0003-3036-1475","id":"442E6A6C-F248-11E8-B48F-1D18A9856A87","first_name":"Zhigang"},{"first_name":"László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","last_name":"Erdös","full_name":"Erdös, László"}],"department":[{"_id":"LaEr"}],"month":"04","project":[{"name":"Random matrices, universality and disordered quantum systems","grant_number":"338804","_id":"258DCDE6-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"}],"article_type":"original","oa":1,"doi":"10.1007/s00440-015-0692-y","acknowledgement":"Z. Bao was supported by ERC Advanced Grant RANMAT No. 338804; L. Erdős was partially supported by ERC Advanced Grant RANMAT No. 338804.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria). The authors are very grateful to the anonymous referees for careful reading and valuable comments, which helped to improve the organization.","pubrep_id":"489","title":"Delocalization for a class of random block band matrices","date_created":"2018-12-11T11:52:32Z","oa_version":"Published Version","publication_identifier":{"issn":["0178-8051"]},"file":[{"relation":"main_file","file_id":"4665","creator":"system","date_updated":"2020-07-14T12:45:00Z","checksum":"67afa85ff1e220cbc1f9f477a828513c","file_name":"IST-2016-489-v1+1_s00440-015-0692-y.pdf","content_type":"application/pdf","date_created":"2018-12-12T10:08:05Z","file_size":1615755,"access_level":"open_access"}],"publication_status":"published","publist_id":"5644"},{"page":"82 - 89","status":"public","scopus_import":"1","file_date_updated":"2019-04-17T08:00:36Z","isi":1,"date_updated":"2026-04-16T09:56:36Z","publication":"Current Opinion in Genetics & Development","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","ddc":["575"],"year":"2017","intvolume":"        45","date_published":"2017-08-01T00:00:00Z","quality_controlled":"1","type":"journal_article","external_id":{"isi":["000404880400013"],"pmid":["28391060"]},"_id":"1004","language":[{"iso":"eng"}],"abstract":[{"text":"The fundamental tasks of the root system are, besides anchoring, mediating interactions between plant and soil and providing the plant with water and nutrients. The architecture of the root system is controlled by endogenous mechanisms that constantly integrate environmental signals, such as availability of nutrients and water. Extremely important for efficient soil exploitation and survival under less favorable conditions is the developmental flexibility of the root system that is largely determined by its postembryonic branching capacity. Modulation of initiation and outgrowth of lateral roots provides roots with an exceptional plasticity, allows optimal adjustment to underground heterogeneity, and enables effective soil exploitation and use of resources. Here we discuss recent advances in understanding the molecular mechanisms that shape the plant root system and integrate external cues to adapt to the changing environment.","lang":"eng"}],"day":"01","citation":{"chicago":"Ötvös, Krisztina, and Eva Benková. “Spatiotemporal Mechanisms of Root Branching.” <i>Current Opinion in Genetics &#38; Development</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.gde.2017.03.010\">https://doi.org/10.1016/j.gde.2017.03.010</a>.","ista":"Ötvös K, Benková E. 2017. Spatiotemporal mechanisms of root branching. Current Opinion in Genetics &#38; Development. 45, 82–89.","ama":"Ötvös K, Benková E. Spatiotemporal mechanisms of root branching. <i>Current Opinion in Genetics &#38; Development</i>. 2017;45:82-89. doi:<a href=\"https://doi.org/10.1016/j.gde.2017.03.010\">10.1016/j.gde.2017.03.010</a>","apa":"Ötvös, K., &#38; Benková, E. (2017). Spatiotemporal mechanisms of root branching. <i>Current Opinion in Genetics &#38; Development</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.gde.2017.03.010\">https://doi.org/10.1016/j.gde.2017.03.010</a>","short":"K. Ötvös, E. Benková, Current Opinion in Genetics &#38; Development 45 (2017) 82–89.","ieee":"K. Ötvös and E. Benková, “Spatiotemporal mechanisms of root branching,” <i>Current Opinion in Genetics &#38; Development</i>, vol. 45. Elsevier, pp. 82–89, 2017.","mla":"Ötvös, Krisztina, and Eva Benková. “Spatiotemporal Mechanisms of Root Branching.” <i>Current Opinion in Genetics &#38; Development</i>, vol. 45, Elsevier, 2017, pp. 82–89, doi:<a href=\"https://doi.org/10.1016/j.gde.2017.03.010\">10.1016/j.gde.2017.03.010</a>."},"has_accepted_license":"1","publisher":"Elsevier","article_processing_charge":"No","tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"pmid":1,"pubrep_id":"1017","oa":1,"doi":"10.1016/j.gde.2017.03.010","month":"08","department":[{"_id":"EvBe"}],"project":[{"call_identifier":"FWF","_id":"2542D156-B435-11E9-9278-68D0E5697425","grant_number":"I 1774-B16","name":"Hormone cross-talk drives nutrient dependent plant development"}],"volume":45,"author":[{"id":"29B901B0-F248-11E8-B48F-1D18A9856A87","first_name":"Krisztina","orcid":"0000-0002-5503-4983","full_name":"Ötvös, Krisztina","last_name":"Ötvös"},{"orcid":"0000-0002-8510-9739","first_name":"Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","last_name":"Benková","full_name":"Benková, Eva"}],"publication_identifier":{"issn":["0959-437X"]},"oa_version":"Submitted Version","title":"Spatiotemporal mechanisms of root branching","date_created":"2018-12-11T11:49:38Z","publication_status":"published","publist_id":"6394","file":[{"date_updated":"2019-04-17T08:00:36Z","creator":"dernst","relation":"main_file","file_id":"6336","file_name":"Otvos_Benkova_CurOpDevBiol_2017.pdf","date_created":"2019-04-17T08:00:36Z","file_size":364133,"content_type":"application/pdf","success":1,"access_level":"open_access"}]},{"doi":"10.1016/j.neuron.2017.04.012","project":[{"grant_number":"618444","call_identifier":"FP7","_id":"25D61E48-B435-11E9-9278-68D0E5697425","name":"Molecular Mechanisms of Cerebral Cortex Development"},{"name":"Quantitative Structure-Function Analysis of Cerebral Cortex Assembly at Clonal Level","_id":"25D7962E-B435-11E9-9278-68D0E5697425","grant_number":"RGP0053/2014"}],"month":"05","department":[{"_id":"SiHi"},{"_id":"MaJö"}],"volume":94,"author":[{"orcid":"0000-0002-8483-8753","id":"2E26DF60-F248-11E8-B48F-1D18A9856A87","first_name":"Robert J","last_name":"Beattie","full_name":"Beattie, Robert J"},{"last_name":"Postiglione","full_name":"Postiglione, Maria P","id":"2C67902A-F248-11E8-B48F-1D18A9856A87","first_name":"Maria P"},{"id":"3B717F68-F248-11E8-B48F-1D18A9856A87","first_name":"Laura","orcid":"0000-0002-8937-410X","full_name":"Burnett, Laura","last_name":"Burnett"},{"last_name":"Laukoter","full_name":"Laukoter, Susanne","first_name":"Susanne","id":"2D6B7A9A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7903-3010"},{"id":"36BCB99C-F248-11E8-B48F-1D18A9856A87","first_name":"Carmen","last_name":"Streicher","full_name":"Streicher, Carmen"},{"full_name":"Pauler, Florian","last_name":"Pauler","orcid":"0000-0002-7462-0048","id":"48EA0138-F248-11E8-B48F-1D18A9856A87","first_name":"Florian"},{"first_name":"Guanxi","full_name":"Xiao, Guanxi","last_name":"Xiao"},{"last_name":"Klezovitch","full_name":"Klezovitch, Olga","first_name":"Olga"},{"first_name":"Valeri","last_name":"Vasioukhin","full_name":"Vasioukhin, Valeri"},{"first_name":"Troy","full_name":"Ghashghaei, Troy","last_name":"Ghashghaei"},{"full_name":"Hippenmeyer, Simon","last_name":"Hippenmeyer","orcid":"0000-0003-2279-1061","id":"37B36620-F248-11E8-B48F-1D18A9856A87","first_name":"Simon"}],"publisher":"Cell Press","corr_author":"1","article_processing_charge":"No","publist_id":"6473","publication_status":"published","publication_identifier":{"issn":["0896-6273"]},"oa_version":"None","title":"Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells","date_created":"2018-12-11T11:49:20Z","acknowledged_ssus":[{"_id":"Bio"},{"_id":"PreCl"}],"isi":1,"date_updated":"2026-04-16T09:57:27Z","publication":"Neuron","status":"public","page":"517 - 533.e3","scopus_import":"1","issue":"3","ec_funded":1,"type":"journal_article","quality_controlled":"1","_id":"944","language":[{"iso":"eng"}],"abstract":[{"text":"The concerted production of neurons and glia by neural stem cells (NSCs) is essential for neural circuit assembly. In the developing cerebral cortex, radial glia progenitors (RGPs) generate nearly all neocortical neurons and certain glia lineages. RGP proliferation behavior shows a high degree of non-stochasticity, thus a deterministic characteristic of neuron and glia production. However, the cellular and molecular mechanisms controlling RGP behavior and proliferation dynamics in neurogenesis and glia generation remain unknown. By using mosaic analysis with double markers (MADM)-based genetic paradigms enabling the sparse and global knockout with unprecedented single-cell resolution, we identified Lgl1 as a critical regulatory component. We uncover Lgl1-dependent tissue-wide community effects required for embryonic cortical neurogenesis and novel cell-autonomous Lgl1 functions controlling RGP-mediated glia genesis and postnatal NSC behavior. These results suggest that NSC-mediated neuron and glia production is tightly regulated through the concerted interplay of sequential Lgl1-dependent global and cell intrinsic mechanisms.","lang":"eng"}],"external_id":{"isi":["000400466700011"]},"day":"03","citation":{"mla":"Beattie, Robert J., et al. “Mosaic Analysis with Double Markers Reveals Distinct Sequential Functions of Lgl1 in Neural Stem Cells.” <i>Neuron</i>, vol. 94, no. 3, Cell Press, 2017, p. 517–533.e3, doi:<a href=\"https://doi.org/10.1016/j.neuron.2017.04.012\">10.1016/j.neuron.2017.04.012</a>.","ieee":"R. J. Beattie <i>et al.</i>, “Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells,” <i>Neuron</i>, vol. 94, no. 3. Cell Press, p. 517–533.e3, 2017.","short":"R.J. Beattie, M.P. Postiglione, L. Burnett, S. Laukoter, C. Streicher, F. Pauler, G. Xiao, O. Klezovitch, V. Vasioukhin, T. Ghashghaei, S. Hippenmeyer, Neuron 94 (2017) 517–533.e3.","apa":"Beattie, R. J., Postiglione, M. P., Burnett, L., Laukoter, S., Streicher, C., Pauler, F., … Hippenmeyer, S. (2017). Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells. <i>Neuron</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.neuron.2017.04.012\">https://doi.org/10.1016/j.neuron.2017.04.012</a>","ama":"Beattie RJ, Postiglione MP, Burnett L, et al. Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells. <i>Neuron</i>. 2017;94(3):517-533.e3. doi:<a href=\"https://doi.org/10.1016/j.neuron.2017.04.012\">10.1016/j.neuron.2017.04.012</a>","ista":"Beattie RJ, Postiglione MP, Burnett L, Laukoter S, Streicher C, Pauler F, Xiao G, Klezovitch O, Vasioukhin V, Ghashghaei T, Hippenmeyer S. 2017. Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells. Neuron. 94(3), 517–533.e3.","chicago":"Beattie, Robert J, Maria P Postiglione, Laura Burnett, Susanne Laukoter, Carmen Streicher, Florian Pauler, Guanxi Xiao, et al. “Mosaic Analysis with Double Markers Reveals Distinct Sequential Functions of Lgl1 in Neural Stem Cells.” <i>Neuron</i>. Cell Press, 2017. <a href=\"https://doi.org/10.1016/j.neuron.2017.04.012\">https://doi.org/10.1016/j.neuron.2017.04.012</a>."},"year":"2017","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","intvolume":"        94","date_published":"2017-05-03T00:00:00Z"},{"intvolume":"        26","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","year":"2017","date_published":"2017-01-01T00:00:00Z","external_id":{"isi":["000397066400002"]},"abstract":[{"lang":"eng","text":"The integrity and dynamic properties of the microtubule cytoskeleton are indispensable for the development of the mammalian brain. Consequently, mutations in the genes that encode the structural component (the α/β-tubulin heterodimer) can give rise to severe, sporadic neurodevelopmental disorders. These are commonly referred to as the tubulinopathies. Here we report the addition of recessive quadrupedalism, also known as Uner Tan syndrome (UTS), to the growing list of diseases caused by tubulin variants. Analysis of a consanguineous UTS family identified a biallelic TUBB2B mutation, resulting in a p.R390Q amino acid substitution. In addition to the identifying quadrupedal locomotion, all three patients showed severe cerebellar hypoplasia. None, however, displayed the basal ganglia malformations typically associated with TUBB2B mutations. Functional analysis of the R390Q substitution revealed that it did not affect the ability of β-tubulin to fold or become assembled into the α/β-heterodimer, nor did it influence the incorporation of mutant-containing heterodimers into microtubule polymers. The 390Q mutation in S. cerevisiae TUB2 did not affect growth under basal conditions, but did result in increased sensitivity to microtubule-depolymerizing drugs, indicative of a mild impact of this mutation on microtubule function. The TUBB2B mutation described here represents an unusual recessive mode of inheritance for missense-mediated tubulinopathies and reinforces the sensitivity of the developing cerebellum to microtubule defects."}],"_id":"1016","language":[{"iso":"eng"}],"quality_controlled":"1","type":"journal_article","day":"01","citation":{"mla":"Breuss, Martin, et al. “Uner Tan Syndrome Caused by a Homozygous TUBB2B Mutation Affecting Microtubule Stability.” <i>Human Molecular Genetics</i>, vol. 26, no. 2, Oxford University Press, 2017, pp. 258–69, doi:<a href=\"https://doi.org/10.1093/hmg/ddw383\">10.1093/hmg/ddw383</a>.","ieee":"M. Breuss <i>et al.</i>, “Uner Tan syndrome caused by a homozygous TUBB2B mutation affecting microtubule stability,” <i>Human Molecular Genetics</i>, vol. 26, no. 2. Oxford University Press, pp. 258–269, 2017.","short":"M. Breuss, T. Nguyen, A. Srivatsan, I. Leca, G. Tian, T. Fritz, A.H. Hansen, D. Musaev, J. Mcevoy Venneri, J. Kiely, R. Rosti, E. Scott, U. Tan, R. Kolodner, N. Cowan, D. Keays, J. Gleeson, Human Molecular Genetics 26 (2017) 258–269.","apa":"Breuss, M., Nguyen, T., Srivatsan, A., Leca, I., Tian, G., Fritz, T., … Gleeson, J. (2017). Uner Tan syndrome caused by a homozygous TUBB2B mutation affecting microtubule stability. <i>Human Molecular Genetics</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/hmg/ddw383\">https://doi.org/10.1093/hmg/ddw383</a>","ama":"Breuss M, Nguyen T, Srivatsan A, et al. Uner Tan syndrome caused by a homozygous TUBB2B mutation affecting microtubule stability. <i>Human Molecular Genetics</i>. 2017;26(2):258-269. doi:<a href=\"https://doi.org/10.1093/hmg/ddw383\">10.1093/hmg/ddw383</a>","ista":"Breuss M, Nguyen T, Srivatsan A, Leca I, Tian G, Fritz T, Hansen AH, Musaev D, Mcevoy Venneri J, Kiely J, Rosti R, Scott E, Tan U, Kolodner R, Cowan N, Keays D, Gleeson J. 2017. Uner Tan syndrome caused by a homozygous TUBB2B mutation affecting microtubule stability. Human Molecular Genetics. 26(2), 258–269.","chicago":"Breuss, Martin, Thai Nguyen, Anjana Srivatsan, Ines Leca, Guoling Tian, Tanja Fritz, Andi H Hansen, et al. “Uner Tan Syndrome Caused by a Homozygous TUBB2B Mutation Affecting Microtubule Stability.” <i>Human Molecular Genetics</i>. Oxford University Press, 2017. <a href=\"https://doi.org/10.1093/hmg/ddw383\">https://doi.org/10.1093/hmg/ddw383</a>."},"status":"public","page":"258 - 269","issue":"2","scopus_import":"1","date_updated":"2026-04-16T09:56:51Z","publication":"Human Molecular Genetics","isi":1,"publication_identifier":{"issn":["0964-6906"]},"title":"Uner Tan syndrome caused by a homozygous TUBB2B mutation affecting microtubule stability","date_created":"2018-12-11T11:49:42Z","oa_version":"None","publication_status":"published","publist_id":"6379","article_processing_charge":"No","publisher":"Oxford University Press","doi":"10.1093/hmg/ddw383","author":[{"full_name":"Breuss, Martin","last_name":"Breuss","first_name":"Martin"},{"first_name":"Thai","full_name":"Nguyen, Thai","last_name":"Nguyen"},{"first_name":"Anjana","full_name":"Srivatsan, Anjana","last_name":"Srivatsan"},{"first_name":"Ines","last_name":"Leca","full_name":"Leca, Ines"},{"full_name":"Tian, Guoling","last_name":"Tian","first_name":"Guoling"},{"first_name":"Tanja","last_name":"Fritz","full_name":"Fritz, Tanja"},{"first_name":"Andi H","id":"38853E16-F248-11E8-B48F-1D18A9856A87","full_name":"Hansen, Andi H","last_name":"Hansen"},{"first_name":"Damir","full_name":"Musaev, Damir","last_name":"Musaev"},{"last_name":"Mcevoy Venneri","full_name":"Mcevoy Venneri, Jennifer","first_name":"Jennifer"},{"first_name":"James","last_name":"Kiely","full_name":"Kiely, James"},{"first_name":"Rasim","full_name":"Rosti, Rasim","last_name":"Rosti"},{"first_name":"Eric","full_name":"Scott, Eric","last_name":"Scott"},{"first_name":"Uner","full_name":"Tan, Uner","last_name":"Tan"},{"full_name":"Kolodner, Richard","last_name":"Kolodner","first_name":"Richard"},{"last_name":"Cowan","full_name":"Cowan, Nicholas","first_name":"Nicholas"},{"last_name":"Keays","full_name":"Keays, David","first_name":"David"},{"full_name":"Gleeson, Joseph","last_name":"Gleeson","first_name":"Joseph"}],"volume":26,"department":[{"_id":"SiHi"}],"month":"01"},{"ec_funded":1,"scopus_import":"1","page":"8 - 14","status":"public","date_updated":"2026-04-16T09:57:03Z","publication":"Current Opinion in Biotechnology","isi":1,"date_published":"2017-12-01T00:00:00Z","intvolume":"        48","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","year":"2017","day":"01","citation":{"apa":"Agus, V., &#38; Janovjak, H. L. (2017). Optogenetic methods in drug screening: Technologies and applications. <i>Current Opinion in Biotechnology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.copbio.2017.02.006\">https://doi.org/10.1016/j.copbio.2017.02.006</a>","mla":"Agus, Viviana, and Harald L. Janovjak. “Optogenetic Methods in Drug Screening: Technologies and Applications.” <i>Current Opinion in Biotechnology</i>, vol. 48, Elsevier, 2017, pp. 8–14, doi:<a href=\"https://doi.org/10.1016/j.copbio.2017.02.006\">10.1016/j.copbio.2017.02.006</a>.","ieee":"V. Agus and H. L. Janovjak, “Optogenetic methods in drug screening: Technologies and applications,” <i>Current Opinion in Biotechnology</i>, vol. 48. Elsevier, pp. 8–14, 2017.","short":"V. Agus, H.L. Janovjak, Current Opinion in Biotechnology 48 (2017) 8–14.","chicago":"Agus, Viviana, and Harald L Janovjak. “Optogenetic Methods in Drug Screening: Technologies and Applications.” <i>Current Opinion in Biotechnology</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.copbio.2017.02.006\">https://doi.org/10.1016/j.copbio.2017.02.006</a>.","ama":"Agus V, Janovjak HL. Optogenetic methods in drug screening: Technologies and applications. <i>Current Opinion in Biotechnology</i>. 2017;48:8-14. doi:<a href=\"https://doi.org/10.1016/j.copbio.2017.02.006\">10.1016/j.copbio.2017.02.006</a>","ista":"Agus V, Janovjak HL. 2017. Optogenetic methods in drug screening: Technologies and applications. Current Opinion in Biotechnology. 48, 8–14."},"external_id":{"isi":["000418313200003"]},"abstract":[{"lang":"eng","text":"The optogenetic revolution enabled spatially-precise and temporally-precise control over protein function, signaling pathway activation, and animal behavior with tremendous success in the dissection of signaling networks and neural circuits. Very recently, optogenetic methods have been paired with optical reporters in novel drug screening platforms. In these all-optical platforms, light remotely activated ion channels and kinases thereby obviating the use of electrophysiology or reagents. Consequences were remarkable operational simplicity, throughput, and cost-effectiveness that culminated in the identification of new drug candidates. These blueprints for all-optical assays also revealed potential pitfalls and inspire all-optical variants of other screens, such as those that aim at better understanding dynamic drug action or orphan protein function."}],"_id":"1026","language":[{"iso":"eng"}],"quality_controlled":"1","type":"journal_article","article_processing_charge":"No","corr_author":"1","publisher":"Elsevier","volume":48,"author":[{"last_name":"Agus","full_name":"Agus, Viviana","first_name":"Viviana"},{"orcid":"0000-0002-8023-9315","first_name":"Harald L","id":"33BA6C30-F248-11E8-B48F-1D18A9856A87","full_name":"Janovjak, Harald L","last_name":"Janovjak"}],"month":"12","department":[{"_id":"HaJa"}],"article_type":"original","project":[{"name":"In situ real-time imaging of neurotransmitter signaling using designer optical sensors","grant_number":"RGY0084/2012","_id":"255BFFFA-B435-11E9-9278-68D0E5697425"},{"grant_number":"303564","call_identifier":"FP7","_id":"25548C20-B435-11E9-9278-68D0E5697425","name":"Microbial Ion Channels for Synthetic Neurobiology"},{"grant_number":"W1232-B24","_id":"255A6082-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Molecular Drug Targets"}],"doi":"10.1016/j.copbio.2017.02.006","acknowledgement":"This work was supported by grants of the European Union Seventh Framework Programme (CIG-303564), the Human Frontier Science Program (RGY0084_2012), and the Austrian Science Fund FWF (W1232 MolecularDrugTargets).","date_created":"2018-12-11T11:49:45Z","title":"Optogenetic methods in drug screening: Technologies and applications","oa_version":"None","publication_identifier":{"issn":["0958-1669"]},"publication_status":"published","publist_id":"6365"},{"department":[{"_id":"CaGu"}],"month":"04","author":[{"first_name":"Chong","full_name":"Fang, Chong","last_name":"Fang"},{"id":"3ABC5BA6-F248-11E8-B48F-1D18A9856A87","first_name":"Anna A","orcid":"0000-0002-1391-8377","last_name":"Nagy-Staron","full_name":"Nagy-Staron, Anna A"},{"full_name":"Grafe, Martin","last_name":"Grafe","first_name":"Martin"},{"last_name":"Heermann","full_name":"Heermann, Ralf","first_name":"Ralf"},{"last_name":"Jung","full_name":"Jung, Kirsten","first_name":"Kirsten"},{"full_name":"Gebhard, Susanne","last_name":"Gebhard","first_name":"Susanne"},{"first_name":"Thorsten","full_name":"Mascher, Thorsten","last_name":"Mascher"}],"volume":104,"doi":"10.1111/mmi.13597","publisher":"Wiley-Blackwell","article_processing_charge":"No","publication_status":"published","publist_id":"6294","oa_version":"None","date_created":"2018-12-11T11:50:03Z","title":"Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis","publication_identifier":{"issn":[" 0950-382X"]},"isi":1,"publication":"Molecular Microbiology","date_updated":"2026-04-16T09:56:09Z","scopus_import":"1","issue":"1","page":"16 - 31","status":"public","day":"01","citation":{"short":"C. Fang, A.A. Nagy-Staron, M. Grafe, R. Heermann, K. Jung, S. Gebhard, T. Mascher, Molecular Microbiology 104 (2017) 16–31.","ieee":"C. Fang <i>et al.</i>, “Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis,” <i>Molecular Microbiology</i>, vol. 104, no. 1. Wiley-Blackwell, pp. 16–31, 2017.","mla":"Fang, Chong, et al. “Insulation and Wiring Specificity of BceR like Response Regulators and Their Target Promoters in Bacillus Subtilis.” <i>Molecular Microbiology</i>, vol. 104, no. 1, Wiley-Blackwell, 2017, pp. 16–31, doi:<a href=\"https://doi.org/10.1111/mmi.13597\">10.1111/mmi.13597</a>.","apa":"Fang, C., Nagy-Staron, A. A., Grafe, M., Heermann, R., Jung, K., Gebhard, S., &#38; Mascher, T. (2017). Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis. <i>Molecular Microbiology</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/mmi.13597\">https://doi.org/10.1111/mmi.13597</a>","ista":"Fang C, Nagy-Staron AA, Grafe M, Heermann R, Jung K, Gebhard S, Mascher T. 2017. Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis. Molecular Microbiology. 104(1), 16–31.","ama":"Fang C, Nagy-Staron AA, Grafe M, et al. Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis. <i>Molecular Microbiology</i>. 2017;104(1):16-31. doi:<a href=\"https://doi.org/10.1111/mmi.13597\">10.1111/mmi.13597</a>","chicago":"Fang, Chong, Anna A Nagy-Staron, Martin Grafe, Ralf Heermann, Kirsten Jung, Susanne Gebhard, and Thorsten Mascher. “Insulation and Wiring Specificity of BceR like Response Regulators and Their Target Promoters in Bacillus Subtilis.” <i>Molecular Microbiology</i>. Wiley-Blackwell, 2017. <a href=\"https://doi.org/10.1111/mmi.13597\">https://doi.org/10.1111/mmi.13597</a>."},"quality_controlled":"1","type":"journal_article","external_id":{"isi":["000398059200002"]},"language":[{"iso":"eng"}],"_id":"1084","abstract":[{"lang":"eng","text":"BceRS and PsdRS are paralogous two-component systems in Bacillus subtilis controlling the response to antimicrobial peptides. In the presence of extracellular bacitracin and nisin, respectively, the two response regulators (RRs) bind their target promoters, PbceA or PpsdA, resulting in a strong up-regulation of target gene expression and ultimately antibiotic resistance. Despite high sequence similarity between the RRs BceR and PsdR and their known binding sites, no cross-regulation has been observed between them. We therefore investigated the specificity determinants of PbceA and PpsdA that ensure the insulation of these two paralogous pathways at the RR–promoter interface. In vivo and in vitro analyses demonstrate that the regulatory regions within these two promoters contain three important elements: in addition to the known (main) binding site, we identified a linker region and a secondary binding site that are crucial for functionality. Initial binding to the high-affinity, low-specificity main binding site is a prerequisite for the subsequent highly specific binding of a second RR dimer to the low-affinity secondary binding site. In addition to this hierarchical cooperative binding, discrimination requires a competition of the two RRs for their respective binding site mediated by only slight differences in binding affinities."}],"date_published":"2017-04-01T00:00:00Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","year":"2017","intvolume":"       104"},{"publication":"Computational Geometry: Theory and Applications","date_updated":"2026-04-16T09:57:17Z","isi":1,"ec_funded":1,"page":"28 - 31","status":"public","day":"01","citation":{"chicago":"Fulek, Radoslav, Hossein Mojarrad, Márton Naszódi, József Solymosi, Sebastian Stich, and May Szedlák. “On the Existence of Ordinary Triangles.” <i>Computational Geometry: Theory and Applications</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.comgeo.2017.07.002\">https://doi.org/10.1016/j.comgeo.2017.07.002</a>.","ista":"Fulek R, Mojarrad H, Naszódi M, Solymosi J, Stich S, Szedlák M. 2017. On the existence of ordinary triangles. Computational Geometry: Theory and Applications. 66, 28–31.","ama":"Fulek R, Mojarrad H, Naszódi M, Solymosi J, Stich S, Szedlák M. On the existence of ordinary triangles. <i>Computational Geometry: Theory and Applications</i>. 2017;66:28-31. doi:<a href=\"https://doi.org/10.1016/j.comgeo.2017.07.002\">10.1016/j.comgeo.2017.07.002</a>","apa":"Fulek, R., Mojarrad, H., Naszódi, M., Solymosi, J., Stich, S., &#38; Szedlák, M. (2017). On the existence of ordinary triangles. <i>Computational Geometry: Theory and Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.comgeo.2017.07.002\">https://doi.org/10.1016/j.comgeo.2017.07.002</a>","ieee":"R. Fulek, H. Mojarrad, M. Naszódi, J. Solymosi, S. Stich, and M. Szedlák, “On the existence of ordinary triangles,” <i>Computational Geometry: Theory and Applications</i>, vol. 66. Elsevier, pp. 28–31, 2017.","short":"R. Fulek, H. Mojarrad, M. Naszódi, J. Solymosi, S. Stich, M. Szedlák, Computational Geometry: Theory and Applications 66 (2017) 28–31.","mla":"Fulek, Radoslav, et al. “On the Existence of Ordinary Triangles.” <i>Computational Geometry: Theory and Applications</i>, vol. 66, Elsevier, 2017, pp. 28–31, doi:<a href=\"https://doi.org/10.1016/j.comgeo.2017.07.002\">10.1016/j.comgeo.2017.07.002</a>."},"_id":"793","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Let P be a finite point set in the plane. A cordinary triangle in P is a subset of P consisting of three non-collinear points such that each of the three lines determined by the three points contains at most c points of P . Motivated by a question of Erdös, and answering a question of de Zeeuw, we prove that there exists a constant c &gt; 0such that P contains a c-ordinary triangle, provided that P is not contained in the union of two lines. Furthermore, the number of c-ordinary triangles in P is Ω(| P |). "}],"external_id":{"arxiv":["1701.08183"],"isi":["000412039700003"]},"type":"journal_article","quality_controlled":"1","date_published":"2017-01-01T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1701.08183"}],"intvolume":"        66","year":"2017","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","author":[{"id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","first_name":"Radoslav","orcid":"0000-0001-8485-1774","last_name":"Fulek","full_name":"Fulek, Radoslav"},{"full_name":"Mojarrad, Hossein","last_name":"Mojarrad","first_name":"Hossein"},{"first_name":"Márton","full_name":"Naszódi, Márton","last_name":"Naszódi"},{"first_name":"József","full_name":"Solymosi, József","last_name":"Solymosi"},{"first_name":"Sebastian","full_name":"Stich, Sebastian","last_name":"Stich"},{"first_name":"May","full_name":"Szedlák, May","last_name":"Szedlák"}],"volume":66,"project":[{"grant_number":"291734","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme"}],"department":[{"_id":"UlWa"}],"month":"01","doi":"10.1016/j.comgeo.2017.07.002","oa":1,"article_processing_charge":"No","publisher":"Elsevier","publist_id":"6861","publication_status":"published","date_created":"2018-12-11T11:48:32Z","title":"On the existence of ordinary triangles","oa_version":"Submitted Version","publication_identifier":{"issn":["0925-7721"]},"arxiv":1},{"intvolume":"        34","year":"2017","ddc":["570","576"],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_published":"2017-07-06T00:00:00Z","language":[{"iso":"eng"}],"_id":"945","abstract":[{"lang":"eng","text":"While chromosome-wide dosage compensation of the X chromosome has been found in many species, studies in ZW clades have indicated that compensation of the Z is more localized and/or incomplete. In the ZW Lepidoptera, some species show complete compensation of the Z chromosome, while others lack full equalization, but what drives these inconsistencies is unclear. Here, we compare patterns of male and female gene expression on the Z chromosome of two closely related butterfly species, Papilio xuthus and Papilio machaon, and in multiple tissues of two moths species, Plodia interpunctella and Bombyx mori, which were previously found to differ in the extent to which they equalize Z-linked gene expression between the sexes. We find that, while some species and tissues seem to have incomplete dosage compensation, this is in fact due to the accumulation of male-biased genes and the depletion of female-biased genes on the Z chromosome. Once this is accounted for, the Z chromosome is fully compensated in all four species, through the up-regulation of Z expression in females and in some cases additional down-regulation in males. We further find that both sex-biased genes and Z-linked genes have increased rates of expression divergence in this clade, and that this can lead to fast shifts in patterns of gene expression even between closely related species. Taken together, these results show that the uneven distribution of sex-biased genes on sex chromosomes can confound conclusions about dosage compensation and that Z chromosome-wide dosage compensation is not only possible but ubiquitous among Lepidoptera."}],"external_id":{"isi":["000411814800016"]},"type":"journal_article","quality_controlled":"1","has_accepted_license":"1","day":"06","citation":{"ista":"Huylmans AK, Macon A, Vicoso B. 2017. Global dosage compensation is ubiquitous in Lepidoptera, but counteracted by the masculinization of the Z chromosome. Molecular Biology and Evolution. 34(10), 2637–2649.","ama":"Huylmans AK, Macon A, Vicoso B. Global dosage compensation is ubiquitous in Lepidoptera, but counteracted by the masculinization of the Z chromosome. <i>Molecular Biology and Evolution</i>. 2017;34(10):2637-2649. doi:<a href=\"https://doi.org/10.1093/molbev/msx190\">10.1093/molbev/msx190</a>","chicago":"Huylmans, Ann K, Ariana Macon, and Beatriz Vicoso. “Global Dosage Compensation Is Ubiquitous in Lepidoptera, but Counteracted by the Masculinization of the Z Chromosome.” <i>Molecular Biology and Evolution</i>. Oxford University Press, 2017. <a href=\"https://doi.org/10.1093/molbev/msx190\">https://doi.org/10.1093/molbev/msx190</a>.","ieee":"A. K. Huylmans, A. Macon, and B. Vicoso, “Global dosage compensation is ubiquitous in Lepidoptera, but counteracted by the masculinization of the Z chromosome,” <i>Molecular Biology and Evolution</i>, vol. 34, no. 10. Oxford University Press, pp. 2637–2649, 2017.","short":"A.K. Huylmans, A. Macon, B. Vicoso, Molecular Biology and Evolution 34 (2017) 2637–2649.","mla":"Huylmans, Ann K., et al. “Global Dosage Compensation Is Ubiquitous in Lepidoptera, but Counteracted by the Masculinization of the Z Chromosome.” <i>Molecular Biology and Evolution</i>, vol. 34, no. 10, Oxford University Press, 2017, pp. 2637–49, doi:<a href=\"https://doi.org/10.1093/molbev/msx190\">10.1093/molbev/msx190</a>.","apa":"Huylmans, A. K., Macon, A., &#38; Vicoso, B. (2017). Global dosage compensation is ubiquitous in Lepidoptera, but counteracted by the masculinization of the Z chromosome. <i>Molecular Biology and Evolution</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/molbev/msx190\">https://doi.org/10.1093/molbev/msx190</a>"},"status":"public","page":"2637 - 2649","issue":"10","scopus_import":"1","file_date_updated":"2020-07-14T12:48:15Z","publication":"Molecular Biology and Evolution","date_updated":"2026-04-16T09:58:19Z","isi":1,"publication_identifier":{"issn":["0737-4038"]},"date_created":"2018-12-11T11:49:20Z","title":"Global dosage compensation is ubiquitous in Lepidoptera, but counteracted by the masculinization of the Z chromosome","oa_version":"Published Version","publist_id":"6472","publication_status":"published","file":[{"file_name":"IST-2017-848-v1+1_2017_Vicoso_GlobalDosage.pdf","checksum":"009fd68043211d645ceb9d1de28274f2","date_updated":"2020-07-14T12:48:15Z","relation":"main_file","file_id":"4810","creator":"system","access_level":"open_access","file_size":462863,"date_created":"2018-12-12T10:10:23Z","content_type":"application/pdf"}],"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"Yes (in subscription journal)","publisher":"Oxford University Press","oa":1,"doi":"10.1093/molbev/msx190","pubrep_id":"848","volume":34,"author":[{"last_name":"Huylmans","full_name":"Huylmans, Ann K","id":"4C0A3874-F248-11E8-B48F-1D18A9856A87","first_name":"Ann K","orcid":"0000-0001-8871-4961"},{"first_name":"Ariana","id":"2A0848E2-F248-11E8-B48F-1D18A9856A87","last_name":"Macon","full_name":"Macon, Ariana"},{"last_name":"Vicoso","full_name":"Vicoso, Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","first_name":"Beatriz","orcid":"0000-0002-4579-8306"}],"project":[{"name":"Sex chromosome evolution under male- and female- heterogamety","grant_number":"P28842-B22","_id":"250ED89C-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"}],"month":"07","department":[{"_id":"BeVi"}]},{"file_date_updated":"2020-07-14T12:47:04Z","isi":1,"date_updated":"2026-04-16T09:58:51Z","publication":"Investigative Ophthalmology and Visual Science","page":"6091 - 6104","status":"public","scopus_import":"1","issue":"14","quality_controlled":"1","type":"journal_article","external_id":{"isi":["000426781300012"]},"language":[{"iso":"eng"}],"_id":"557","abstract":[{"text":"PURPOSE. Gene therapy of retinal ganglion cells (RGCs) has promise as a powerful therapeutic for the rescue and regeneration of these cells after optic nerve damage. However, early after damage, RGCs undergo atrophic changes, including gene silencing. It is not known if these changes will deleteriously affect transduction and transgene expression, or if the therapeutic protein can influence reactivation of the endogenous genome. METHODS. Double-transgenic mice carrying a Rosa26-(LoxP)-tdTomato reporter, and a mutant allele for the proapoptotic Bax gene were reared. The Bax mutant blocks apoptosis, but RGCs still exhibit nuclear atrophy and gene silencing. At times ranging from 1 hour to 4 weeks after optic nerve crush (ONC), eyes received an intravitreal injection of AAV2 virus carrying the Cre recombinase. Successful transduction was monitored by expression of the tdTomato reporter. Immunostaining was used to localize tdTomato expression in select cell types. RESULTS. Successful transduction of RGCs was achieved at all time points after ONC using AAV2 expressing Cre from the phosphoglycerate kinase (Pgk) promoter, but not the CMV promoter. ONC promoted an increase in the transduction of cell types in the inner nuclear layer, including Müller cells and rod bipolar neurons. There was minimal evidence of transduction of amacrine cells and astrocytes in the inner retina or optic nerve. CONCLUSIONS. Damaged RGCs can be transduced and at least some endogenous genes can be subsequently activated. Optic nerve damage may change retinal architecture to allow greater penetration of an AAV2 virus to transduce several additional cell types in the inner nuclear layer.","lang":"eng"}],"citation":{"ama":"Nickells R, Schmitt H, Maes ME, Schlamp C. AAV2 mediated transduction of the mouse retina after optic nerve injury. <i>Investigative Ophthalmology and Visual Science</i>. 2017;58(14):6091-6104. doi:<a href=\"https://doi.org/10.1167/iovs.17-22634\">10.1167/iovs.17-22634</a>","ista":"Nickells R, Schmitt H, Maes ME, Schlamp C. 2017. AAV2 mediated transduction of the mouse retina after optic nerve injury. Investigative Ophthalmology and Visual Science. 58(14), 6091–6104.","chicago":"Nickells, Robert, Heather Schmitt, Margaret E Maes, and Cassandra Schlamp. “AAV2 Mediated Transduction of the Mouse Retina after Optic Nerve Injury.” <i>Investigative Ophthalmology and Visual Science</i>. Association for Research in Vision and Ophthalmology, 2017. <a href=\"https://doi.org/10.1167/iovs.17-22634\">https://doi.org/10.1167/iovs.17-22634</a>.","mla":"Nickells, Robert, et al. “AAV2 Mediated Transduction of the Mouse Retina after Optic Nerve Injury.” <i>Investigative Ophthalmology and Visual Science</i>, vol. 58, no. 14, Association for Research in Vision and Ophthalmology, 2017, pp. 6091–104, doi:<a href=\"https://doi.org/10.1167/iovs.17-22634\">10.1167/iovs.17-22634</a>.","ieee":"R. Nickells, H. Schmitt, M. E. Maes, and C. Schlamp, “AAV2 mediated transduction of the mouse retina after optic nerve injury,” <i>Investigative Ophthalmology and Visual Science</i>, vol. 58, no. 14. Association for Research in Vision and Ophthalmology, pp. 6091–6104, 2017.","short":"R. Nickells, H. Schmitt, M.E. Maes, C. Schlamp, Investigative Ophthalmology and Visual Science 58 (2017) 6091–6104.","apa":"Nickells, R., Schmitt, H., Maes, M. E., &#38; Schlamp, C. (2017). AAV2 mediated transduction of the mouse retina after optic nerve injury. <i>Investigative Ophthalmology and Visual Science</i>. Association for Research in Vision and Ophthalmology. <a href=\"https://doi.org/10.1167/iovs.17-22634\">https://doi.org/10.1167/iovs.17-22634</a>"},"day":"14","has_accepted_license":"1","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","ddc":["576"],"year":"2017","intvolume":"        58","date_published":"2017-12-14T00:00:00Z","pubrep_id":"920","doi":"10.1167/iovs.17-22634","oa":1,"department":[{"_id":"SaSi"}],"month":"12","author":[{"last_name":"Nickells","full_name":"Nickells, Robert","first_name":"Robert"},{"first_name":"Heather","last_name":"Schmitt","full_name":"Schmitt, Heather"},{"last_name":"Maes","full_name":"Maes, Margaret E","first_name":"Margaret E","id":"3838F452-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9642-1085"},{"first_name":"Cassandra","full_name":"Schlamp, Cassandra","last_name":"Schlamp"}],"volume":58,"publisher":"Association for Research in Vision and Ophthalmology","article_processing_charge":"No","tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"publication_status":"published","publist_id":"7254","file":[{"access_level":"open_access","file_size":2955559,"date_created":"2018-12-12T10:17:53Z","content_type":"application/pdf","file_name":"IST-2018-920-v1+1_i1552-5783-58-14-6091.pdf","checksum":"d7a7b6f1fa9211a04e5e65634a0265d9","creator":"system","file_id":"5311","relation":"main_file","date_updated":"2020-07-14T12:47:04Z"}],"publication_identifier":{"issn":["0146-0404"]},"oa_version":"Published Version","date_created":"2018-12-11T11:47:10Z","title":"AAV2 mediated transduction of the mouse retina after optic nerve injury"},{"article_processing_charge":"Yes (in subscription journal)","publisher":"ACM","author":[{"first_name":"Stefan","id":"44D6411A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4330-8884","last_name":"Jeschke","full_name":"Jeschke, Stefan"},{"full_name":"Wojtan, Christopher J","last_name":"Wojtan","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","first_name":"Christopher J","orcid":"0000-0001-6646-5546"}],"volume":36,"month":"07","department":[{"_id":"ChWo"}],"article_type":"original","project":[{"name":"Big Splash: Efficient Simulation of Natural Phenomena at Extremely Large Scales","grant_number":"638176","call_identifier":"H2020","_id":"2533E772-B435-11E9-9278-68D0E5697425"}],"doi":"10.1145/3072959.3073678","oa":1,"title":"Water wave packets","date_created":"2018-12-11T11:46:39Z","oa_version":"Published Version","publication_identifier":{"issn":["0730-0301"]},"file":[{"date_created":"2020-01-24T09:32:35Z","file_size":13131683,"content_type":"application/pdf","access_level":"open_access","relation":"main_file","file_id":"7359","date_updated":"2020-07-14T12:46:34Z","creator":"wojtan","file_name":"wavepackets_final.pdf","checksum":"82a3b2bfeee4ddef16ecc21675d1a48a"}],"publication_status":"published","publist_id":"7350","ec_funded":1,"issue":"4","scopus_import":"1","status":"public","publication":"ACM Transactions on Graphics","date_updated":"2026-04-16T09:58:39Z","isi":1,"acknowledged_ssus":[{"_id":"ScienComp"}],"file_date_updated":"2020-07-14T12:46:34Z","date_published":"2017-07-01T00:00:00Z","article_number":"103","intvolume":"        36","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","ddc":["006"],"year":"2017","day":"01","citation":{"chicago":"Jeschke, Stefan, and Chris Wojtan. “Water Wave Packets.” <i>ACM Transactions on Graphics</i>. ACM, 2017. <a href=\"https://doi.org/10.1145/3072959.3073678\">https://doi.org/10.1145/3072959.3073678</a>.","ista":"Jeschke S, Wojtan C. 2017. Water wave packets. ACM Transactions on Graphics. 36(4), 103.","ama":"Jeschke S, Wojtan C. Water wave packets. <i>ACM Transactions on Graphics</i>. 2017;36(4). doi:<a href=\"https://doi.org/10.1145/3072959.3073678\">10.1145/3072959.3073678</a>","apa":"Jeschke, S., &#38; Wojtan, C. (2017). Water wave packets. <i>ACM Transactions on Graphics</i>. ACM. <a href=\"https://doi.org/10.1145/3072959.3073678\">https://doi.org/10.1145/3072959.3073678</a>","ieee":"S. Jeschke and C. Wojtan, “Water wave packets,” <i>ACM Transactions on Graphics</i>, vol. 36, no. 4. ACM, 2017.","short":"S. Jeschke, C. Wojtan, ACM Transactions on Graphics 36 (2017).","mla":"Jeschke, Stefan, and Chris Wojtan. “Water Wave Packets.” <i>ACM Transactions on Graphics</i>, vol. 36, no. 4, 103, ACM, 2017, doi:<a href=\"https://doi.org/10.1145/3072959.3073678\">10.1145/3072959.3073678</a>."},"has_accepted_license":"1","external_id":{"isi":["000406432100071"]},"language":[{"iso":"eng"}],"_id":"470","abstract":[{"text":"This paper presents a method for simulating water surface waves as a displacement field on a 2D domain. Our method relies on Lagrangian particles that carry packets of water wave energy; each packet carries information about an entire group of wave trains, as opposed to only a single wave crest. Our approach is unconditionally stable and can simulate high resolution geometric details. This approach also presents a straightforward interface for artistic control, because it is essentially a particle system with intuitive parameters like wavelength and amplitude. Our implementation parallelizes well and runs in real time for moderately challenging scenarios.","lang":"eng"}],"quality_controlled":"1","type":"journal_article"},{"publist_id":"7089","publication_status":"published","file":[{"file_id":"5139","relation":"main_file","date_updated":"2020-07-14T12:47:33Z","creator":"system","file_name":"IST-2018-987-v1+1_2017_KichevaRivron__Creating_to.pdf","checksum":"eef22a0f42a55b232cb2d1188a2322cb","file_size":228206,"date_created":"2018-12-12T10:15:20Z","content_type":"application/pdf","access_level":"open_access"}],"publication_identifier":{"issn":["0950-1991"]},"title":"Creating to understand – developmental biology meets engineering in Paris","date_created":"2018-12-11T11:47:44Z","oa_version":"Submitted Version","doi":"10.1242/dev.144915","oa":1,"pubrep_id":"987","volume":144,"author":[{"full_name":"Kicheva, Anna","last_name":"Kicheva","first_name":"Anna","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4509-4998"},{"first_name":"Nicolas","full_name":"Rivron, Nicolas","last_name":"Rivron"}],"project":[{"call_identifier":"H2020","_id":"B6FC0238-B512-11E9-945C-1524E6697425","grant_number":"680037","name":"Coordination of Patterning And Growth In the Spinal Cord"}],"department":[{"_id":"AnKi"}],"month":"03","corr_author":"1","article_processing_charge":"No","publisher":"Company of Biologists","_id":"654","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"In November 2016, developmental biologists, synthetic biologists and engineers gathered in Paris for a meeting called ‘Engineering the embryo’. The participants shared an interest in exploring how synthetic systems can reveal new principles of embryonic development, and how the in vitro manipulation and modeling of development using stem cells can be used to integrate ideas and expertise from physics, developmental biology and tissue engineering. As we review here, the conference pinpointed some of the challenges arising at the intersection of these fields, along with great enthusiasm for finding new approaches and collaborations."}],"external_id":{"isi":["000395650100001"]},"type":"journal_article","quality_controlled":"1","has_accepted_license":"1","citation":{"apa":"Kicheva, A., &#38; Rivron, N. (2017). Creating to understand – developmental biology meets engineering in Paris. <i>Development</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/dev.144915\">https://doi.org/10.1242/dev.144915</a>","ieee":"A. Kicheva and N. Rivron, “Creating to understand – developmental biology meets engineering in Paris,” <i>Development</i>, vol. 144, no. 5. Company of Biologists, pp. 733–736, 2017.","short":"A. Kicheva, N. Rivron, Development 144 (2017) 733–736.","mla":"Kicheva, Anna, and Nicolas Rivron. “Creating to Understand – Developmental Biology Meets Engineering in Paris.” <i>Development</i>, vol. 144, no. 5, Company of Biologists, 2017, pp. 733–36, doi:<a href=\"https://doi.org/10.1242/dev.144915\">10.1242/dev.144915</a>.","chicago":"Kicheva, Anna, and Nicolas Rivron. “Creating to Understand – Developmental Biology Meets Engineering in Paris.” <i>Development</i>. Company of Biologists, 2017. <a href=\"https://doi.org/10.1242/dev.144915\">https://doi.org/10.1242/dev.144915</a>.","ista":"Kicheva A, Rivron N. 2017. Creating to understand – developmental biology meets engineering in Paris. Development. 144(5), 733–736.","ama":"Kicheva A, Rivron N. Creating to understand – developmental biology meets engineering in Paris. <i>Development</i>. 2017;144(5):733-736. doi:<a href=\"https://doi.org/10.1242/dev.144915\">10.1242/dev.144915</a>"},"day":"01","intvolume":"       144","year":"2017","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","ddc":["571"],"date_published":"2017-03-01T00:00:00Z","file_date_updated":"2020-07-14T12:47:33Z","date_updated":"2026-04-16T09:59:52Z","publication":"Development","isi":1,"page":"733 - 736","status":"public","issue":"5","ec_funded":1,"scopus_import":"1"},{"page":"159 - 187","status":"public","editor":[{"full_name":"Schmeisser, Michael","last_name":"Schmeisser","first_name":"Michael"},{"full_name":"Boekers, Tobias","last_name":"Boekers","first_name":"Tobias"}],"scopus_import":"1","date_updated":"2026-04-16T09:59:22Z","publication":"Translational Anatomy and Cell Biology of Autism Spectrum Disorder","isi":1,"intvolume":"       224","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","year":"2017","date_published":"2017-05-28T00:00:00Z","external_id":{"isi":["000443802500010"]},"_id":"623","abstract":[{"text":"Genetic factors might be largely responsible for the development of autism spectrum disorder (ASD) that alone or in combination with specific environmental risk factors trigger the pathology. Multiple mutations identified in ASD patients that impair synaptic function in the central nervous system are well studied in animal models. How these mutations might interact with other risk factors is not fully understood though. Additionally, how systems outside of the brain are altered in the context of ASD is an emerging area of research. Extracerebral influences on the physiology could begin in utero and contribute to changes in the brain and in the development of other body systems and further lead to epigenetic changes. Therefore, multiple recent studies have aimed at elucidating the role of gene-environment interactions in ASD. Here we provide an overview on the extracerebral systems that might play an important associative role in ASD and review evidence regarding the potential roles of inflammation, trace metals, metabolism, genetic susceptibility, enteric nervous system function and the microbiota of the gastrointestinal (GI) tract on the development of endophenotypes in animal models of ASD. By influencing environmental conditions, it might be possible to reduce or limit the severity of ASD pathology.","lang":"eng"}],"language":[{"iso":"eng"}],"quality_controlled":"1","type":"book_chapter","citation":{"ista":"Hill Yardin E, Mckeown S, Novarino G, Grabrucker A. 2017.Extracerebral dysfunction in animal models of autism spectrum disorder. In: Translational Anatomy and Cell Biology of Autism Spectrum Disorder. ADVSANAT, vol. 224, 159–187.","ama":"Hill Yardin E, Mckeown S, Novarino G, Grabrucker A. Extracerebral dysfunction in animal models of autism spectrum disorder. In: Schmeisser M, Boekers T, eds. <i>Translational Anatomy and Cell Biology of Autism Spectrum Disorder</i>. Vol 224. Advances in Anatomy Embryology and Cell Biology. Springer; 2017:159-187. doi:<a href=\"https://doi.org/10.1007/978-3-319-52498-6_9\">10.1007/978-3-319-52498-6_9</a>","chicago":"Hill Yardin, Elisa, Sonja Mckeown, Gaia Novarino, and Andreas Grabrucker. “Extracerebral Dysfunction in Animal Models of Autism Spectrum Disorder.” In <i>Translational Anatomy and Cell Biology of Autism Spectrum Disorder</i>, edited by Michael Schmeisser and Tobias Boekers, 224:159–87. Advances in Anatomy Embryology and Cell Biology. Springer, 2017. <a href=\"https://doi.org/10.1007/978-3-319-52498-6_9\">https://doi.org/10.1007/978-3-319-52498-6_9</a>.","short":"E. Hill Yardin, S. Mckeown, G. Novarino, A. Grabrucker, in:, M. Schmeisser, T. Boekers (Eds.), Translational Anatomy and Cell Biology of Autism Spectrum Disorder, Springer, 2017, pp. 159–187.","ieee":"E. Hill Yardin, S. Mckeown, G. Novarino, and A. Grabrucker, “Extracerebral dysfunction in animal models of autism spectrum disorder,” in <i>Translational Anatomy and Cell Biology of Autism Spectrum Disorder</i>, vol. 224, M. Schmeisser and T. Boekers, Eds. Springer, 2017, pp. 159–187.","mla":"Hill Yardin, Elisa, et al. “Extracerebral Dysfunction in Animal Models of Autism Spectrum Disorder.” <i>Translational Anatomy and Cell Biology of Autism Spectrum Disorder</i>, edited by Michael Schmeisser and Tobias Boekers, vol. 224, Springer, 2017, pp. 159–87, doi:<a href=\"https://doi.org/10.1007/978-3-319-52498-6_9\">10.1007/978-3-319-52498-6_9</a>.","apa":"Hill Yardin, E., Mckeown, S., Novarino, G., &#38; Grabrucker, A. (2017). Extracerebral dysfunction in animal models of autism spectrum disorder. In M. Schmeisser &#38; T. Boekers (Eds.), <i>Translational Anatomy and Cell Biology of Autism Spectrum Disorder</i> (Vol. 224, pp. 159–187). Springer. <a href=\"https://doi.org/10.1007/978-3-319-52498-6_9\">https://doi.org/10.1007/978-3-319-52498-6_9</a>"},"day":"28","article_processing_charge":"No","publisher":"Springer","series_title":"Advances in Anatomy Embryology and Cell Biology","doi":"10.1007/978-3-319-52498-6_9","author":[{"last_name":"Hill Yardin","full_name":"Hill Yardin, Elisa","first_name":"Elisa"},{"first_name":"Sonja","full_name":"Mckeown, Sonja","last_name":"Mckeown"},{"orcid":"0000-0002-7673-7178","first_name":"Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","full_name":"Novarino, Gaia","last_name":"Novarino"},{"first_name":"Andreas","full_name":"Grabrucker, Andreas","last_name":"Grabrucker"}],"volume":224,"department":[{"_id":"GaNo"}],"month":"05","publication_identifier":{"isbn":["9783319524962"],"issn":["0301-5556"]},"date_created":"2018-12-11T11:47:33Z","title":"Extracerebral dysfunction in animal models of autism spectrum disorder","alternative_title":["ADVSANAT"],"oa_version":"None","publication_status":"published","publist_id":"7177"},{"project":[{"grant_number":"S11402-N23","call_identifier":"FWF","_id":"25F5A88A-B435-11E9-9278-68D0E5697425","name":"Moderne Concurrency Paradigms"},{"grant_number":"Z211","call_identifier":"FWF","_id":"25F42A32-B435-11E9-9278-68D0E5697425","name":"Formal methods for the design and analysis of complex systems"}],"department":[{"_id":"ToHe"}],"month":"01","author":[{"full_name":"Trinh, Minh","last_name":"Trinh","first_name":"Minh"},{"full_name":"Chu, Duc Hiep","last_name":"Chu","id":"3598E630-F248-11E8-B48F-1D18A9856A87","first_name":"Duc Hiep"},{"full_name":"Jaffar, Joxan","last_name":"Jaffar","first_name":"Joxan"}],"volume":10427,"doi":"10.1007/978-3-319-63390-9_21","publisher":"Springer","article_processing_charge":"No","publist_id":"6443","publication_status":"published","conference":{"end_date":"2017-07-28","location":"Heidelberg, Germany","name":"CAV: Computer Aided Verification","start_date":"2017-07-24"},"oa_version":"None","alternative_title":["LNCS"],"title":"Model counting for recursively-defined strings","date_created":"2018-12-11T11:49:26Z","publication_identifier":{"issn":["0302-9743"]},"isi":1,"date_updated":"2026-04-16T09:58:05Z","scopus_import":"1","editor":[{"full_name":"Majumdar, Rupak","last_name":"Majumdar","first_name":"Rupak"},{"first_name":"Viktor","last_name":"Kunčak","full_name":"Kunčak, Viktor"}],"status":"public","page":"399 - 418","day":"01","citation":{"apa":"Trinh, M., Chu, D. H., &#38; Jaffar, J. (2017). Model counting for recursively-defined strings. In R. Majumdar &#38; V. Kunčak (Eds.) (Vol. 10427, pp. 399–418). Presented at the CAV: Computer Aided Verification, Heidelberg, Germany: Springer. <a href=\"https://doi.org/10.1007/978-3-319-63390-9_21\">https://doi.org/10.1007/978-3-319-63390-9_21</a>","mla":"Trinh, Minh, et al. <i>Model Counting for Recursively-Defined Strings</i>. Edited by Rupak Majumdar and Viktor Kunčak, vol. 10427, Springer, 2017, pp. 399–418, doi:<a href=\"https://doi.org/10.1007/978-3-319-63390-9_21\">10.1007/978-3-319-63390-9_21</a>.","ieee":"M. Trinh, D. H. Chu, and J. Jaffar, “Model counting for recursively-defined strings,” presented at the CAV: Computer Aided Verification, Heidelberg, Germany, 2017, vol. 10427, pp. 399–418.","short":"M. Trinh, D.H. Chu, J. Jaffar, in:, R. Majumdar, V. Kunčak (Eds.), Springer, 2017, pp. 399–418.","chicago":"Trinh, Minh, Duc Hiep Chu, and Joxan Jaffar. “Model Counting for Recursively-Defined Strings.” edited by Rupak Majumdar and Viktor Kunčak, 10427:399–418. Springer, 2017. <a href=\"https://doi.org/10.1007/978-3-319-63390-9_21\">https://doi.org/10.1007/978-3-319-63390-9_21</a>.","ama":"Trinh M, Chu DH, Jaffar J. Model counting for recursively-defined strings. In: Majumdar R, Kunčak V, eds. Vol 10427. Springer; 2017:399-418. doi:<a href=\"https://doi.org/10.1007/978-3-319-63390-9_21\">10.1007/978-3-319-63390-9_21</a>","ista":"Trinh M, Chu DH, Jaffar J. 2017. Model counting for recursively-defined strings. CAV: Computer Aided Verification, LNCS, vol. 10427, 399–418."},"type":"conference","quality_controlled":"1","abstract":[{"text":"We present a new algorithm for model counting of a class of string constraints. In addition to the classic operation of concatenation, our class includes some recursively defined operations such as Kleene closure, and replacement of substrings. Additionally, our class also includes length constraints on the string expressions, which means, by requiring reasoning about numbers, that we face a multi-sorted logic. In the end, our string constraints are motivated by their use in programming for web applications. Our algorithm comprises two novel features: the ability to use a technique of (1) partial derivatives for constraints that are already in a solved form, i.e. a form where its (string) satisfiability is clearly displayed, and (2) non-progression, where cyclic reasoning in the reduction process may be terminated (thus allowing for the algorithm to look elsewhere). Finally, we experimentally compare our model counter with two recent works on model counting of similar constraints, SMC [18] and ABC [5], to demonstrate its superior performance.","lang":"eng"}],"_id":"962","language":[{"iso":"eng"}],"external_id":{"isi":["000431900900021"]},"date_published":"2017-01-01T00:00:00Z","year":"2017","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","intvolume":"     10427"},{"arxiv":1,"publication_identifier":{"issn":["0890-5401"]},"oa_version":"Submitted Version","title":"Doomsday equilibria for omega-regular games","date_created":"2018-12-11T11:47:53Z","publication_status":"published","publist_id":"7036","publisher":"Elsevier","article_processing_charge":"No","corr_author":"1","related_material":{"record":[{"status":"public","id":"10885","relation":"earlier_version"}]},"oa":1,"doi":"10.1016/j.ic.2016.10.012","department":[{"_id":"KrCh"}],"month":"06","article_type":"original","project":[{"grant_number":"P 23499-N23","call_identifier":"FWF","_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification"},{"grant_number":"S11407","call_identifier":"FWF","_id":"25863FF4-B435-11E9-9278-68D0E5697425","name":"Game Theory"},{"name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307","call_identifier":"FP7","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734"}],"author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu"},{"first_name":"Laurent","last_name":"Doyen","full_name":"Doyen, Laurent"},{"last_name":"Filiot","full_name":"Filiot, Emmanuel","first_name":"Emmanuel"},{"full_name":"Raskin, Jean","last_name":"Raskin","first_name":"Jean"}],"volume":254,"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","year":"2017","intvolume":"       254","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1311.3238"}],"date_published":"2017-06-01T00:00:00Z","quality_controlled":"1","type":"journal_article","external_id":{"isi":["000402025600008"],"arxiv":["1311.3238"]},"language":[{"iso":"eng"}],"_id":"681","abstract":[{"lang":"eng","text":"Two-player games on graphs provide the theoretical framework for many important problems such as reactive synthesis. While the traditional study of two-player zero-sum games has been extended to multi-player games with several notions of equilibria, they are decidable only for perfect-information games, whereas several applications require imperfect-information. In this paper we propose a new notion of equilibria, called doomsday equilibria, which is a strategy profile where all players satisfy their own objective, and if any coalition of players deviates and violates even one of the players' objective, then the objective of every player is violated. We present algorithms and complexity results for deciding the existence of doomsday equilibria for various classes of ω-regular objectives, both for imperfect-information games, and for perfect-information games. We provide optimal complexity bounds for imperfect-information games, and in most cases for perfect-information games."}],"day":"01","citation":{"apa":"Chatterjee, K., Doyen, L., Filiot, E., &#38; Raskin, J. (2017). Doomsday equilibria for omega-regular games. <i>Information and Computation</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ic.2016.10.012\">https://doi.org/10.1016/j.ic.2016.10.012</a>","mla":"Chatterjee, Krishnendu, et al. “Doomsday Equilibria for Omega-Regular Games.” <i>Information and Computation</i>, vol. 254, Elsevier, 2017, pp. 296–315, doi:<a href=\"https://doi.org/10.1016/j.ic.2016.10.012\">10.1016/j.ic.2016.10.012</a>.","ieee":"K. Chatterjee, L. Doyen, E. Filiot, and J. Raskin, “Doomsday equilibria for omega-regular games,” <i>Information and Computation</i>, vol. 254. Elsevier, pp. 296–315, 2017.","short":"K. Chatterjee, L. Doyen, E. Filiot, J. Raskin, Information and Computation 254 (2017) 296–315.","chicago":"Chatterjee, Krishnendu, Laurent Doyen, Emmanuel Filiot, and Jean Raskin. “Doomsday Equilibria for Omega-Regular Games.” <i>Information and Computation</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.ic.2016.10.012\">https://doi.org/10.1016/j.ic.2016.10.012</a>.","ama":"Chatterjee K, Doyen L, Filiot E, Raskin J. Doomsday equilibria for omega-regular games. <i>Information and Computation</i>. 2017;254:296-315. doi:<a href=\"https://doi.org/10.1016/j.ic.2016.10.012\">10.1016/j.ic.2016.10.012</a>","ista":"Chatterjee K, Doyen L, Filiot E, Raskin J. 2017. Doomsday equilibria for omega-regular games. Information and Computation. 254, 296–315."},"page":"296 - 315","status":"public","scopus_import":"1","ec_funded":1,"isi":1,"publication":"Information and Computation","date_updated":"2026-04-16T10:00:03Z"},{"date_updated":"2026-04-16T09:59:38Z","isi":1,"page":"586 - 599","status":"public","scopus_import":"1","editor":[{"first_name":"Gerhard","full_name":"Jäger, Gerhard","last_name":"Jäger"},{"first_name":"Silvia","full_name":"Steila, Silvia","last_name":"Steila"}],"_id":"650","language":[{"iso":"eng"}],"abstract":[{"text":"In this work we present a short and unified proof for the Strong and Weak Regularity Lemma, based on the cryptographic tech-nique called low-complexity approximations. In short, both problems reduce to a task of finding constructively an approximation for a certain target function under a class of distinguishers (test functions), where dis-tinguishers are combinations of simple rectangle-indicators. In our case these approximations can be learned by a simple iterative procedure, which yields a unified and simple proof, achieving for any graph with density d and any approximation parameter the partition size. The novelty in our proof is: (a) a simple approach which yields both strong and weaker variant, and (b) improvements when d = o(1). At an abstract level, our proof can be seen a refinement and simplification of the “analytic” proof given by Lovasz and Szegedy.","lang":"eng"}],"external_id":{"isi":["000425175500042"]},"type":"conference","quality_controlled":"1","citation":{"apa":"Skórski, M. (2017). A cryptographic view of regularity lemmas: Simpler unified proofs and refined bounds. In G. Jäger &#38; S. Steila (Eds.) (Vol. 10185, pp. 586–599). Presented at the TAMC: Theory and Applications of Models of Computation, Bern, Switzerland: Springer. <a href=\"https://doi.org/10.1007/978-3-319-55911-7_42\">https://doi.org/10.1007/978-3-319-55911-7_42</a>","mla":"Skórski, Maciej. <i>A Cryptographic View of Regularity Lemmas: Simpler Unified Proofs and Refined Bounds</i>. Edited by Gerhard Jäger and Silvia Steila, vol. 10185, Springer, 2017, pp. 586–99, doi:<a href=\"https://doi.org/10.1007/978-3-319-55911-7_42\">10.1007/978-3-319-55911-7_42</a>.","short":"M. Skórski, in:, G. Jäger, S. Steila (Eds.), Springer, 2017, pp. 586–599.","ieee":"M. Skórski, “A cryptographic view of regularity lemmas: Simpler unified proofs and refined bounds,” presented at the TAMC: Theory and Applications of Models of Computation, Bern, Switzerland, 2017, vol. 10185, pp. 586–599.","chicago":"Skórski, Maciej. “A Cryptographic View of Regularity Lemmas: Simpler Unified Proofs and Refined Bounds.” edited by Gerhard Jäger and Silvia Steila, 10185:586–99. Springer, 2017. <a href=\"https://doi.org/10.1007/978-3-319-55911-7_42\">https://doi.org/10.1007/978-3-319-55911-7_42</a>.","ama":"Skórski M. A cryptographic view of regularity lemmas: Simpler unified proofs and refined bounds. In: Jäger G, Steila S, eds. Vol 10185. Springer; 2017:586-599. doi:<a href=\"https://doi.org/10.1007/978-3-319-55911-7_42\">10.1007/978-3-319-55911-7_42</a>","ista":"Skórski M. 2017. A cryptographic view of regularity lemmas: Simpler unified proofs and refined bounds. TAMC: Theory and Applications of Models of Computation, LNCS, vol. 10185, 586–599."},"day":"01","intvolume":"     10185","year":"2017","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_published":"2017-01-01T00:00:00Z","main_file_link":[{"url":"https://eprint.iacr.org/2016/965.pdf","open_access":"1"}],"doi":"10.1007/978-3-319-55911-7_42","oa":1,"volume":10185,"author":[{"first_name":"Maciej","id":"EC09FA6A-02D0-11E9-8223-86B7C91467DD","last_name":"Skórski","full_name":"Skórski, Maciej"}],"month":"01","department":[{"_id":"KrPi"}],"corr_author":"1","article_processing_charge":"No","publisher":"Springer","publist_id":"7119","conference":{"start_date":"2017-04-20","name":"TAMC: Theory and Applications of Models of Computation","location":"Bern, Switzerland","end_date":"2017-04-22"},"publication_status":"published","publication_identifier":{"issn":["0302-9743"]},"title":"A cryptographic view of regularity lemmas: Simpler unified proofs and refined bounds","alternative_title":["LNCS"],"date_created":"2018-12-11T11:47:42Z","oa_version":"Submitted Version"},{"publication_identifier":{"issn":["0376-8716"]},"oa_version":"Submitted Version","title":"HIV Tat excites D1 receptor-like expressing neurons from rat nucleus accumbens","date_created":"2018-12-11T11:48:05Z","publist_id":"6967","publication_status":"published","publisher":"Elsevier","article_processing_charge":"No","pmid":1,"acknowledgement":"This work was supported by the National Institutes of Health grants DA035926 (to MEA), and P30DA013429 (to EMU).","oa":1,"doi":"10.1016/j.drugalcdep.2017.04.015","article_type":"original","month":"09","department":[{"_id":"GaNo"}],"author":[{"first_name":"Gabriela","last_name":"Brailoiu","full_name":"Brailoiu, Gabriela"},{"full_name":"Deliu, Elena","last_name":"Deliu","id":"37A40D7E-F248-11E8-B48F-1D18A9856A87","first_name":"Elena","orcid":"0000-0002-7370-5293"},{"first_name":"Jeffrey","last_name":"Barr","full_name":"Barr, Jeffrey"},{"first_name":"Linda","last_name":"Console Bram","full_name":"Console Bram, Linda"},{"first_name":"Alexandra","full_name":"Ciuciu, Alexandra","last_name":"Ciuciu"},{"last_name":"Abood","full_name":"Abood, Mary","first_name":"Mary"},{"last_name":"Unterwald","full_name":"Unterwald, Ellen","first_name":"Ellen"},{"full_name":"Brǎiloiu, Eugen","last_name":"Brǎiloiu","first_name":"Eugen"}],"volume":178,"year":"2017","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","intvolume":"       178","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5797705","open_access":"1"}],"date_published":"2017-09-01T00:00:00Z","type":"journal_article","quality_controlled":"1","abstract":[{"lang":"eng","text":"Background HIV-1 infection and drug abuse are frequently co-morbid and their association greatly increases the severity of HIV-1-induced neuropathology. While nucleus accumbens (NAcc) function is severely perturbed by drugs of abuse, little is known about how HIV-1 infection affects NAcc. Methods We used calcium and voltage imaging to investigate the effect of HIV-1 trans-activator of transcription (Tat) on rat NAcc. Based on previous neuronal studies, we hypothesized that Tat modulates intracellular Ca2+ homeostasis of NAcc neurons. Results We provide evidence that Tat triggers a Ca2+ signaling cascade in NAcc medium spiny neurons (MSN) expressing D1-like dopamine receptors leading to neuronal depolarization. Firstly, Tat induced inositol 1,4,5-trisphsophate (IP3) receptor-mediated Ca2+ release from endoplasmic reticulum, followed by Ca2+ and Na+ influx via transient receptor potential canonical channels. The influx of cations depolarizes the membrane promoting additional Ca2+ entry through voltage-gated P/Q-type Ca2+ channels and opening of tetrodotoxin-sensitive Na+ channels. By activating this mechanism, Tat elicits a feed-forward depolarization increasing the excitability of D1-phosphatidylinositol-linked NAcc MSN. We previously found that cocaine targets NAcc neurons directly (independent of the inhibition of dopamine transporter) only when IP3-generating mechanisms are concomitantly initiated. When tested here, cocaine produced a dose-dependent potentiation of the effect of Tat on cytosolic Ca2+. Conclusion We describe for the first time a HIV-1 Tat-triggered Ca2+ signaling in MSN of NAcc involving TRPC and depolarization and a potentiation of the effect of Tat by cocaine, which may be relevant for the reward axis in cocaine-abusing HIV-1-positive patients."}],"_id":"714","language":[{"iso":"eng"}],"external_id":{"pmid":["28623807"],"isi":["000409152300002"]},"citation":{"mla":"Brailoiu, Gabriela, et al. “HIV Tat Excites D1 Receptor-like Expressing Neurons from Rat Nucleus Accumbens.” <i>Drug and Alcohol Dependence</i>, vol. 178, Elsevier, 2017, pp. 7–14, doi:<a href=\"https://doi.org/10.1016/j.drugalcdep.2017.04.015\">10.1016/j.drugalcdep.2017.04.015</a>.","short":"G. Brailoiu, E. Deliu, J. Barr, L. Console Bram, A. Ciuciu, M. Abood, E. Unterwald, E. Brǎiloiu, Drug and Alcohol Dependence 178 (2017) 7–14.","ieee":"G. Brailoiu <i>et al.</i>, “HIV Tat excites D1 receptor-like expressing neurons from rat nucleus accumbens,” <i>Drug and Alcohol Dependence</i>, vol. 178. Elsevier, pp. 7–14, 2017.","apa":"Brailoiu, G., Deliu, E., Barr, J., Console Bram, L., Ciuciu, A., Abood, M., … Brǎiloiu, E. (2017). HIV Tat excites D1 receptor-like expressing neurons from rat nucleus accumbens. <i>Drug and Alcohol Dependence</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.drugalcdep.2017.04.015\">https://doi.org/10.1016/j.drugalcdep.2017.04.015</a>","ama":"Brailoiu G, Deliu E, Barr J, et al. HIV Tat excites D1 receptor-like expressing neurons from rat nucleus accumbens. <i>Drug and Alcohol Dependence</i>. 2017;178:7-14. doi:<a href=\"https://doi.org/10.1016/j.drugalcdep.2017.04.015\">10.1016/j.drugalcdep.2017.04.015</a>","ista":"Brailoiu G, Deliu E, Barr J, Console Bram L, Ciuciu A, Abood M, Unterwald E, Brǎiloiu E. 2017. HIV Tat excites D1 receptor-like expressing neurons from rat nucleus accumbens. Drug and Alcohol Dependence. 178, 7–14.","chicago":"Brailoiu, Gabriela, Elena Deliu, Jeffrey Barr, Linda Console Bram, Alexandra Ciuciu, Mary Abood, Ellen Unterwald, and Eugen Brǎiloiu. “HIV Tat Excites D1 Receptor-like Expressing Neurons from Rat Nucleus Accumbens.” <i>Drug and Alcohol Dependence</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.drugalcdep.2017.04.015\">https://doi.org/10.1016/j.drugalcdep.2017.04.015</a>."},"day":"01","status":"public","page":"7 - 14","scopus_import":"1","isi":1,"date_updated":"2026-04-16T10:01:59Z","publication":"Drug and Alcohol Dependence"},{"author":[{"last_name":"Briscoe","full_name":"Briscoe, James","first_name":"James"},{"orcid":"0000-0003-4509-4998","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","first_name":"Anna","full_name":"Kicheva, Anna","last_name":"Kicheva"}],"volume":145,"department":[{"_id":"AnKi"}],"month":"06","project":[{"name":"Coordination of Patterning And Growth In the Spinal Cord","grant_number":"680037","_id":"B6FC0238-B512-11E9-945C-1524E6697425","call_identifier":"H2020"}],"doi":"10.1016/j.mod.2017.03.005","oa":1,"pubrep_id":"985","pmid":1,"article_processing_charge":"No","publisher":"Elsevier","file":[{"file_name":"2017_Briscoe_Kicheva_and_DArcy_accepted_version.pdf","checksum":"727043d2e4199fbef6b3704e6d1ac105","relation":"main_file","date_updated":"2020-07-14T12:47:42Z","creator":"dernst","file_id":"6335","access_level":"open_access","file_size":652313,"date_created":"2019-04-17T07:58:48Z","content_type":"application/pdf"}],"publication_status":"published","publist_id":"7025","title":"The physics of development 100 years after D'Arcy Thompson's “on growth and form”","date_created":"2018-12-11T11:47:55Z","oa_version":"Submitted Version","publication_identifier":{"issn":["0925-4773"]},"publication":"Mechanisms of Development","date_updated":"2026-04-16T10:01:00Z","isi":1,"file_date_updated":"2020-07-14T12:47:42Z","ec_funded":1,"scopus_import":"1","status":"public","page":"26 - 31","day":"01","citation":{"mla":"Briscoe, James, and Anna Kicheva. “The Physics of Development 100 Years after D’Arcy Thompson’s ‘on Growth and Form.’” <i>Mechanisms of Development</i>, vol. 145, Elsevier, 2017, pp. 26–31, doi:<a href=\"https://doi.org/10.1016/j.mod.2017.03.005\">10.1016/j.mod.2017.03.005</a>.","ieee":"J. Briscoe and A. Kicheva, “The physics of development 100 years after D’Arcy Thompson’s ‘on growth and form,’” <i>Mechanisms of Development</i>, vol. 145. Elsevier, pp. 26–31, 2017.","short":"J. Briscoe, A. Kicheva, Mechanisms of Development 145 (2017) 26–31.","apa":"Briscoe, J., &#38; Kicheva, A. (2017). The physics of development 100 years after D’Arcy Thompson’s “on growth and form.” <i>Mechanisms of Development</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.mod.2017.03.005\">https://doi.org/10.1016/j.mod.2017.03.005</a>","ama":"Briscoe J, Kicheva A. The physics of development 100 years after D’Arcy Thompson’s “on growth and form.” <i>Mechanisms of Development</i>. 2017;145:26-31. doi:<a href=\"https://doi.org/10.1016/j.mod.2017.03.005\">10.1016/j.mod.2017.03.005</a>","ista":"Briscoe J, Kicheva A. 2017. The physics of development 100 years after D’Arcy Thompson’s “on growth and form”. Mechanisms of Development. 145, 26–31.","chicago":"Briscoe, James, and Anna Kicheva. “The Physics of Development 100 Years after D’Arcy Thompson’s ‘on Growth and Form.’” <i>Mechanisms of Development</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.mod.2017.03.005\">https://doi.org/10.1016/j.mod.2017.03.005</a>."},"has_accepted_license":"1","external_id":{"pmid":["28366718"],"isi":["000402836800006"]},"_id":"685","language":[{"iso":"eng"}],"abstract":[{"text":"By applying methods and principles from the physical sciences to biological problems, D'Arcy Thompson's On Growth and Form demonstrated how mathematical reasoning reveals elegant, simple explanations for seemingly complex processes. This has had a profound influence on subsequent generations of developmental biologists. We discuss how this influence can be traced through twentieth century morphologists, embryologists and theoreticians to current research that explores the molecular and cellular mechanisms of tissue growth and patterning, including our own studies of the vertebrate neural tube.","lang":"eng"}],"quality_controlled":"1","type":"journal_article","date_published":"2017-06-01T00:00:00Z","intvolume":"       145","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","ddc":["571"],"year":"2017"},{"publication_identifier":{"issn":["0306-4522"]},"date_created":"2018-12-11T11:48:17Z","title":"Modulation of cardiac vagal tone by bradykinin acting on nucleus ambiguus","oa_version":"Submitted Version","publication_status":"published","publist_id":"6911","article_processing_charge":"No","publisher":"Elsevier","pmid":1,"oa":1,"doi":"10.1016/j.neuroscience.2017.09.034","volume":365,"author":[{"last_name":"Brǎiloiu","full_name":"Brǎiloiu, Eugen","first_name":"Eugen"},{"first_name":"Matthew","last_name":"Mcguire","full_name":"Mcguire, Matthew"},{"first_name":"Shadaria","full_name":"Shuler, Shadaria","last_name":"Shuler"},{"full_name":"Deliu, Elena","last_name":"Deliu","first_name":"Elena","id":"37A40D7E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7370-5293"},{"last_name":"Barr","full_name":"Barr, Jeffrey","first_name":"Jeffrey"},{"first_name":"Mary","last_name":"Abood","full_name":"Abood, Mary"},{"first_name":"Gabriela","full_name":"Brailoiu, Gabriela","last_name":"Brailoiu"}],"department":[{"_id":"GaNo"}],"month":"12","article_type":"original","intvolume":"       365","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","year":"2017","date_published":"2017-12-04T00:00:00Z","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798458","open_access":"1"}],"external_id":{"isi":["000415966200003"],"pmid":["28951324"]},"language":[{"iso":"eng"}],"_id":"747","abstract":[{"text":"Bradykinin (BK), a component of the kallikrein-kininogen-kinin system exerts multiple effects via B1 and B2 receptor activation. In the cardiovascular system, bradykinin has cardioprotective and vasodilator properties. We investigated the effect of BK on cardiac-projecting neurons of nucleus ambiguus, a key site for the parasympathetic cardiac regulation. BK produced a dose-dependent increase in cytosolic Ca2+ concentration. Pretreatment with HOE140, a B2 receptor antagonist, but not with R715, a B1 receptor antagonist, abolished the response to BK. A selective B2 receptor agonist, but not a B1 receptor agonist, elicited an increase in cytosolic Ca2+ similarly to BK. Inhibition of N-type voltage-gated Ca2+ channels with ω-conotoxin GVIA had no effect on the Ca2+ signal produced by BK, while pretreatment with ω-conotoxin MVIIC, a blocker of P/Q-type of Ca2+ channels, significantly diminished the effect of BK. Pretreatment with xestospongin C and 2-aminoethoxydiphenyl borate, antagonists of inositol 1,4,5-trisphosphate receptors, abolished the response to BK. Inhibition of ryanodine receptors reduced the BK-induced Ca2+ increase, while disruption of lysosomal Ca2+ stores with bafilomycin A1 did not affect the response. BK produced a dose-dependent depolarization of nucleus ambiguus neurons, which was prevented by the B2 receptor antagonist. In vivo studies indicate that microinjection of BK into nucleus ambiguus elicited bradycardia in conscious rats via B2 receptors. In summary, in cardiac vagal neurons of nucleus ambiguus, BK activates B2 receptors promoting Ca2+ influx and Ca2+ release from endoplasmic reticulum, and membrane depolarization; these effects are translated in vivo by bradycardia.","lang":"eng"}],"quality_controlled":"1","type":"journal_article","citation":{"apa":"Brǎiloiu, E., Mcguire, M., Shuler, S., Deliu, E., Barr, J., Abood, M., &#38; Brailoiu, G. (2017). Modulation of cardiac vagal tone by bradykinin acting on nucleus ambiguus. <i>Neuroscience</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuroscience.2017.09.034\">https://doi.org/10.1016/j.neuroscience.2017.09.034</a>","ieee":"E. Brǎiloiu <i>et al.</i>, “Modulation of cardiac vagal tone by bradykinin acting on nucleus ambiguus,” <i>Neuroscience</i>, vol. 365. Elsevier, pp. 23–32, 2017.","short":"E. Brǎiloiu, M. Mcguire, S. Shuler, E. Deliu, J. Barr, M. Abood, G. Brailoiu, Neuroscience 365 (2017) 23–32.","mla":"Brǎiloiu, Eugen, et al. “Modulation of Cardiac Vagal Tone by Bradykinin Acting on Nucleus Ambiguus.” <i>Neuroscience</i>, vol. 365, Elsevier, 2017, pp. 23–32, doi:<a href=\"https://doi.org/10.1016/j.neuroscience.2017.09.034\">10.1016/j.neuroscience.2017.09.034</a>.","chicago":"Brǎiloiu, Eugen, Matthew Mcguire, Shadaria Shuler, Elena Deliu, Jeffrey Barr, Mary Abood, and Gabriela Brailoiu. “Modulation of Cardiac Vagal Tone by Bradykinin Acting on Nucleus Ambiguus.” <i>Neuroscience</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.neuroscience.2017.09.034\">https://doi.org/10.1016/j.neuroscience.2017.09.034</a>.","ista":"Brǎiloiu E, Mcguire M, Shuler S, Deliu E, Barr J, Abood M, Brailoiu G. 2017. Modulation of cardiac vagal tone by bradykinin acting on nucleus ambiguus. Neuroscience. 365, 23–32.","ama":"Brǎiloiu E, Mcguire M, Shuler S, et al. Modulation of cardiac vagal tone by bradykinin acting on nucleus ambiguus. <i>Neuroscience</i>. 2017;365:23-32. doi:<a href=\"https://doi.org/10.1016/j.neuroscience.2017.09.034\">10.1016/j.neuroscience.2017.09.034</a>"},"day":"04","page":"23 - 32","status":"public","scopus_import":"1","date_updated":"2026-04-16T10:04:53Z","publication":"Neuroscience","isi":1}]