[{"publication":"Royal Society Open Science","citation":{"mla":"Chakra, Maria, et al. “Coevolutionary Interactions between Farmers and Mafia Induce Host Acceptance of Avian Brood Parasites.” <i>Royal Society Open Science</i>, vol. 3, no. 5, 160036, Royal Society, The, 2016, doi:<a href=\"https://doi.org/10.1098/rsos.160036\">10.1098/rsos.160036</a>.","chicago":"Chakra, Maria, Christian Hilbe, and Arne Traulsen. “Coevolutionary Interactions between Farmers and Mafia Induce Host Acceptance of Avian Brood Parasites.” <i>Royal Society Open Science</i>. Royal Society, The, 2016. <a href=\"https://doi.org/10.1098/rsos.160036\">https://doi.org/10.1098/rsos.160036</a>.","apa":"Chakra, M., Hilbe, C., &#38; Traulsen, A. (2016). Coevolutionary interactions between farmers and mafia induce host acceptance of avian brood parasites. <i>Royal Society Open Science</i>. Royal Society, The. <a href=\"https://doi.org/10.1098/rsos.160036\">https://doi.org/10.1098/rsos.160036</a>","ieee":"M. Chakra, C. Hilbe, and A. Traulsen, “Coevolutionary interactions between farmers and mafia induce host acceptance of avian brood parasites,” <i>Royal Society Open Science</i>, vol. 3, no. 5. Royal Society, The, 2016.","short":"M. Chakra, C. Hilbe, A. Traulsen, Royal Society Open Science 3 (2016).","ista":"Chakra M, Hilbe C, Traulsen A. 2016. Coevolutionary interactions between farmers and mafia induce host acceptance of avian brood parasites. Royal Society Open Science. 3(5), 160036.","ama":"Chakra M, Hilbe C, Traulsen A. Coevolutionary interactions between farmers and mafia induce host acceptance of avian brood parasites. <i>Royal Society Open Science</i>. 2016;3(5). doi:<a href=\"https://doi.org/10.1098/rsos.160036\">10.1098/rsos.160036</a>"},"doi":"10.1098/rsos.160036","title":"Coevolutionary interactions between farmers and mafia induce host acceptance of avian brood parasites","external_id":{"isi":["000377969800008"]},"status":"public","department":[{"_id":"KrCh"}],"intvolume":"         3","file":[{"relation":"main_file","checksum":"bf84211b31fe87451e738ba301d729c3","file_id":"5104","date_updated":"2020-07-14T12:44:53Z","file_name":"IST-2016-589-v1+1_160036.full.pdf","creator":"system","file_size":937002,"date_created":"2018-12-12T10:14:49Z","content_type":"application/pdf","access_level":"open_access"}],"publist_id":"5776","volume":3,"oa":1,"date_updated":"2025-09-18T14:14:59Z","pubrep_id":"589","abstract":[{"lang":"eng","text":"Brood parasites exploit their host in order to increase their own fitness. Typically, this results in an arms race between parasite trickery and host defence. Thus, it is puzzling to observe hosts that accept parasitism without any resistance. The ‘mafia’ hypothesis suggests that these hosts accept parasitism to avoid retaliation. Retaliation has been shown to evolve when the hosts condition their response to mafia parasites, who use depredation as a targeted response to rejection. However, it is unclear if acceptance would also emerge when ‘farming’ parasites are present in the population. Farming parasites use depredation to synchronize the timing with the host, destroying mature clutches to force the host to re-nest. Herein, we develop an evolutionary model to analyse the interaction between depredatory parasites and their hosts. We show that coevolutionary cycles between farmers and mafia can still induce host acceptance of brood parasites. However, this equilibrium is unstable and in the long-run the dynamics of this host–parasite interaction exhibits strong oscillations: when farmers are the majority, accepters conditional to mafia (the host will reject first and only accept after retaliation by the parasite) have a higher fitness than unconditional accepters (the host always accepts parasitism). This leads to an increase in mafia parasites’ fitness and in turn induce an optimal environment for accepter hosts."}],"type":"journal_article","day":"01","quality_controlled":"1","publication_status":"published","year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"05","oa_version":"Published Version","_id":"1426","article_number":"160036","scopus_import":"1","date_published":"2016-05-01T00:00:00Z","author":[{"first_name":"Maria","full_name":"Chakra, Maria","last_name":"Chakra"},{"last_name":"Hilbe","orcid":"0000-0001-5116-955X","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","first_name":"Christian","full_name":"Hilbe, Christian"},{"last_name":"Traulsen","first_name":"Arne","full_name":"Traulsen, Arne"}],"publisher":"Royal Society, The","language":[{"iso":"eng"}],"article_processing_charge":"No","has_accepted_license":"1","acknowledgement":"C.H. gratefully acknowledges funding by the Schrödinger scholarship of the Austrian Science Fund (FWF) J3475.","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"isi":1,"file_date_updated":"2020-07-14T12:44:53Z","ddc":["000"],"date_created":"2018-12-11T11:51:57Z","issue":"5"},{"ec_funded":1,"publication":"Molecular Biology and Evolution","doi":"10.1093/molbev/msv269","citation":{"ieee":"M. Lagator, C. Igler, A. Moreno, C. C. Guet, and J. P. Bollback, “Epistatic interactions in the arabinose cis-regulatory element,” <i>Molecular Biology and Evolution</i>, vol. 33, no. 3. Oxford University Press, pp. 761–769, 2016.","short":"M. Lagator, C. Igler, A. Moreno, C.C. Guet, J.P. Bollback, Molecular Biology and Evolution 33 (2016) 761–769.","ista":"Lagator M, Igler C, Moreno A, Guet CC, Bollback JP. 2016. Epistatic interactions in the arabinose cis-regulatory element. Molecular Biology and Evolution. 33(3), 761–769.","ama":"Lagator M, Igler C, Moreno A, Guet CC, Bollback JP. Epistatic interactions in the arabinose cis-regulatory element. <i>Molecular Biology and Evolution</i>. 2016;33(3):761-769. doi:<a href=\"https://doi.org/10.1093/molbev/msv269\">10.1093/molbev/msv269</a>","chicago":"Lagator, Mato, Claudia Igler, Anaisa Moreno, Calin C Guet, and Jonathan P Bollback. “Epistatic Interactions in the Arabinose Cis-Regulatory Element.” <i>Molecular Biology and Evolution</i>. Oxford University Press, 2016. <a href=\"https://doi.org/10.1093/molbev/msv269\">https://doi.org/10.1093/molbev/msv269</a>.","mla":"Lagator, Mato, et al. “Epistatic Interactions in the Arabinose Cis-Regulatory Element.” <i>Molecular Biology and Evolution</i>, vol. 33, no. 3, Oxford University Press, 2016, pp. 761–69, doi:<a href=\"https://doi.org/10.1093/molbev/msv269\">10.1093/molbev/msv269</a>.","apa":"Lagator, M., Igler, C., Moreno, A., Guet, C. C., &#38; Bollback, J. P. (2016). Epistatic interactions in the arabinose cis-regulatory element. <i>Molecular Biology and Evolution</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/molbev/msv269\">https://doi.org/10.1093/molbev/msv269</a>"},"external_id":{"isi":["000371219500014"]},"title":"Epistatic interactions in the arabinose cis-regulatory element","status":"public","department":[{"_id":"CaGu"},{"_id":"JoBo"}],"intvolume":"        33","file":[{"file_name":"IST-2016-588-v1+1_Mol_Biol_Evol-2016-Lagator-761-9.pdf","date_updated":"2020-07-14T12:44:53Z","file_size":648115,"creator":"system","content_type":"application/pdf","date_created":"2018-12-12T10:09:27Z","access_level":"open_access","relation":"main_file","checksum":"1f456ce1d2aa2f67176a1709f9702ecf","file_id":"4751"}],"publist_id":"5772","oa":1,"volume":33,"date_updated":"2025-09-18T14:11:47Z","pubrep_id":"588","abstract":[{"text":"Changes in gene expression are an important mode of evolution; however, the proximate mechanism of these changes is poorly understood. In particular, little is known about the effects of mutations within cis binding sites for transcription factors, or the nature of epistatic interactions between these mutations. Here, we tested the effects of single and double mutants in two cis binding sites involved in the transcriptional regulation of the Escherichia coli araBAD operon, a component of arabinose metabolism, using a synthetic system. This system decouples transcriptional control from any posttranslational effects on fitness, allowing a precise estimate of the effect of single and double mutations, and hence epistasis, on gene expression. We found that epistatic interactions between mutations in the araBAD cis-regulatory element are common, and that the predominant form of epistasis is negative. The magnitude of the interactions depended on whether the mutations are located in the same or in different operator sites. Importantly, these epistatic interactions were dependent on the presence of arabinose, a native inducer of the araBAD operon in vivo, with some interactions changing in sign (e.g., from negative to positive) in its presence. This study thus reveals that mutations in even relatively simple cis-regulatory elements interact in complex ways such that selection on the level of gene expression in one environment might perturb regulation in the other environment in an unpredictable and uncorrelated manner.","lang":"eng"}],"type":"journal_article","day":"01","corr_author":"1","quality_controlled":"1","publication_status":"published","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"03","year":"2016","oa_version":"Published Version","_id":"1427","project":[{"call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734"}],"scopus_import":"1","date_published":"2016-03-01T00:00:00Z","page":"761 - 769","author":[{"id":"345D25EC-F248-11E8-B48F-1D18A9856A87","last_name":"Lagator","full_name":"Lagator, Mato","first_name":"Mato"},{"id":"46613666-F248-11E8-B48F-1D18A9856A87","last_name":"Igler","full_name":"Igler, Claudia","first_name":"Claudia"},{"full_name":"Moreno, Anaisa","first_name":"Anaisa","last_name":"Moreno"},{"last_name":"Guet","orcid":"0000-0001-6220-2052","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","first_name":"Calin C","full_name":"Guet, Calin C"},{"first_name":"Jonathan P","full_name":"Bollback, Jonathan P","orcid":"0000-0002-4624-4612","last_name":"Bollback","id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87"}],"publisher":"Oxford University Press","language":[{"iso":"eng"}],"article_processing_charge":"No","has_accepted_license":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"isi":1,"file_date_updated":"2020-07-14T12:44:53Z","ddc":["570","576"],"date_created":"2018-12-11T11:51:57Z","issue":"3"},{"status":"public","title":"Superfluidity and BEC in a Model of Interacting Bosons in a Random Potential","external_id":{"isi":["000402374100016"]},"department":[{"_id":"RoSe"}],"doi":"10.1088/1742-6596/691/1/012016","citation":{"ama":"Könenberg M, Moser T, Seiringer R, Yngvason J. Superfluidity and BEC in a Model of Interacting Bosons in a Random Potential. In: <i>Journal of Physics: Conference Series</i>. Vol 691. IOP Publishing; 2016. doi:<a href=\"https://doi.org/10.1088/1742-6596/691/1/012016\">10.1088/1742-6596/691/1/012016</a>","ista":"Könenberg M, Moser T, Seiringer R, Yngvason J. 2016. Superfluidity and BEC in a Model of Interacting Bosons in a Random Potential. Journal of Physics: Conference Series. 24th International Laser Physics Workshop (LPHYS’15) vol. 691, 012016.","short":"M. Könenberg, T. Moser, R. Seiringer, J. Yngvason, in:, Journal of Physics: Conference Series, IOP Publishing, 2016.","ieee":"M. Könenberg, T. Moser, R. Seiringer, and J. Yngvason, “Superfluidity and BEC in a Model of Interacting Bosons in a Random Potential,” in <i>Journal of Physics: Conference Series</i>, Shanghai, China, 2016, vol. 691, no. 1.","apa":"Könenberg, M., Moser, T., Seiringer, R., &#38; Yngvason, J. (2016). Superfluidity and BEC in a Model of Interacting Bosons in a Random Potential. In <i>Journal of Physics: Conference Series</i> (Vol. 691). Shanghai, China: IOP Publishing. <a href=\"https://doi.org/10.1088/1742-6596/691/1/012016\">https://doi.org/10.1088/1742-6596/691/1/012016</a>","chicago":"Könenberg, Martin, Thomas Moser, Robert Seiringer, and Jakob Yngvason. “Superfluidity and BEC in a Model of Interacting Bosons in a Random Potential.” In <i>Journal of Physics: Conference Series</i>, Vol. 691. IOP Publishing, 2016. <a href=\"https://doi.org/10.1088/1742-6596/691/1/012016\">https://doi.org/10.1088/1742-6596/691/1/012016</a>.","mla":"Könenberg, Martin, et al. “Superfluidity and BEC in a Model of Interacting Bosons in a Random Potential.” <i>Journal of Physics: Conference Series</i>, vol. 691, no. 1, 012016, IOP Publishing, 2016, doi:<a href=\"https://doi.org/10.1088/1742-6596/691/1/012016\">10.1088/1742-6596/691/1/012016</a>."},"publication":"Journal of Physics: Conference Series","date_updated":"2025-09-18T14:04:23Z","pubrep_id":"585","oa":1,"publist_id":"5770","volume":691,"intvolume":"       691","file":[{"checksum":"109db801749072c3f6c8f1a1848700fa","file_id":"4847","relation":"main_file","creator":"system","file_size":1434688,"access_level":"open_access","date_created":"2018-12-12T10:10:55Z","content_type":"application/pdf","file_name":"IST-2016-585-v1+1_JPCS_691_1_012016.pdf","date_updated":"2020-07-14T12:44:53Z"}],"year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"03","publication_status":"published","type":"conference","abstract":[{"text":"We report on a mathematically rigorous analysis of the superfluid properties of a Bose- Einstein condensate in the many-body ground state of a one-dimensional model of interacting bosons in a random potential.","lang":"eng"}],"quality_controlled":"1","day":"07","oa_version":"Published Version","project":[{"_id":"25C878CE-B435-11E9-9278-68D0E5697425","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems","call_identifier":"FWF","grant_number":"P27533_N27"}],"scopus_import":"1","_id":"1428","article_number":"012016","language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"IOP Publishing","has_accepted_license":"1","author":[{"full_name":"Könenberg, Martin","first_name":"Martin","last_name":"Könenberg"},{"first_name":"Thomas","full_name":"Moser, Thomas","last_name":"Moser","id":"2B5FC9A4-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Robert","full_name":"Seiringer, Robert","orcid":"0000-0002-6781-0521","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Yngvason, Jakob","first_name":"Jakob","last_name":"Yngvason"}],"conference":{"name":"24th International Laser Physics Workshop (LPHYS'15)","location":"Shanghai, China","start_date":"2015-08-21","end_date":"2015-08-25"},"date_published":"2016-03-07T00:00:00Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"isi":1,"issue":"1","file_date_updated":"2020-07-14T12:44:53Z","date_created":"2018-12-11T11:51:58Z","ddc":["510","530"]},{"language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"Nature Publishing Group","has_accepted_license":"1","author":[{"first_name":"Chad","full_name":"Husko, Chad","last_name":"Husko"},{"first_name":"Matthias","full_name":"Wulf, Matthias","orcid":"0000-0001-6613-1378","last_name":"Wulf","id":"45598606-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Simon","full_name":"Lefrançois, Simon","last_name":"Lefrançois"},{"last_name":"Combrié","full_name":"Combrié, Sylvain","first_name":"Sylvain"},{"first_name":"Gaëlle","full_name":"Lehoucq, Gaëlle","last_name":"Lehoucq"},{"last_name":"De Rossi","first_name":"Alfredo","full_name":"De Rossi, Alfredo"},{"last_name":"Eggleton","first_name":"Benjamin","full_name":"Eggleton, Benjamin"},{"last_name":"Kuipers","first_name":"Laurens","full_name":"Kuipers, Laurens"}],"date_published":"2016-04-15T00:00:00Z","scopus_import":"1","_id":"1429","article_number":"11332 (2016)","file_date_updated":"2020-07-14T12:44:53Z","date_created":"2018-12-11T11:51:58Z","ddc":["530"],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"This research was supported by the Australian Research Council (ARC) Center of Excellence CUDOS (CE110001018), ARC Laureate Fellowship (FL120100029), ARC Discovery Early Career Researcher Award (DECRA DE120102069), the Netherlands Foundation for Fundamental Research on Matter (FOM) and the Netherlands Organization for Scientific Research (NWO). L.K. acknowledges funding from ERC Advanced Investigator Grant (no. 240438-CONSTANS). A.D.R, S.C., and G.L. acknowledge financial support from the ERC-Pharos programme lead by A. P. Mosk.","isi":1,"date_updated":"2025-09-18T14:02:55Z","pubrep_id":"583","volume":7,"publist_id":"5769","oa":1,"intvolume":"         7","file":[{"date_updated":"2020-07-14T12:44:53Z","file_name":"IST-2016-583-v1+1_ncomms11332.pdf","file_size":965176,"creator":"system","date_created":"2018-12-12T10:15:53Z","content_type":"application/pdf","access_level":"open_access","relation":"main_file","file_id":"5177","checksum":"6484fa81a2e52e4fdd7935e1ae6091d4"}],"status":"public","external_id":{"isi":["000374127800001"]},"title":"Free-carrier-induced soliton fission unveiled by in situ measurements in nanophotonic waveguides","department":[{"_id":"JoFi"}],"doi":"10.1038/ncomms11332","citation":{"ista":"Husko C, Wulf M, Lefrançois S, Combrié S, Lehoucq G, De Rossi A, Eggleton B, Kuipers L. 2016. Free-carrier-induced soliton fission unveiled by in situ measurements in nanophotonic waveguides. Nature Communications. 7, 11332 (2016).","ama":"Husko C, Wulf M, Lefrançois S, et al. Free-carrier-induced soliton fission unveiled by in situ measurements in nanophotonic waveguides. <i>Nature Communications</i>. 2016;7. doi:<a href=\"https://doi.org/10.1038/ncomms11332\">10.1038/ncomms11332</a>","ieee":"C. Husko <i>et al.</i>, “Free-carrier-induced soliton fission unveiled by in situ measurements in nanophotonic waveguides,” <i>Nature Communications</i>, vol. 7. Nature Publishing Group, 2016.","short":"C. Husko, M. Wulf, S. Lefrançois, S. Combrié, G. Lehoucq, A. De Rossi, B. Eggleton, L. Kuipers, Nature Communications 7 (2016).","mla":"Husko, Chad, et al. “Free-Carrier-Induced Soliton Fission Unveiled by in Situ Measurements in Nanophotonic Waveguides.” <i>Nature Communications</i>, vol. 7, 11332 (2016), Nature Publishing Group, 2016, doi:<a href=\"https://doi.org/10.1038/ncomms11332\">10.1038/ncomms11332</a>.","chicago":"Husko, Chad, Matthias Wulf, Simon Lefrançois, Sylvain Combrié, Gaëlle Lehoucq, Alfredo De Rossi, Benjamin Eggleton, and Laurens Kuipers. “Free-Carrier-Induced Soliton Fission Unveiled by in Situ Measurements in Nanophotonic Waveguides.” <i>Nature Communications</i>. Nature Publishing Group, 2016. <a href=\"https://doi.org/10.1038/ncomms11332\">https://doi.org/10.1038/ncomms11332</a>.","apa":"Husko, C., Wulf, M., Lefrançois, S., Combrié, S., Lehoucq, G., De Rossi, A., … Kuipers, L. (2016). Free-carrier-induced soliton fission unveiled by in situ measurements in nanophotonic waveguides. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncomms11332\">https://doi.org/10.1038/ncomms11332</a>"},"publication":"Nature Communications","oa_version":"Published Version","year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"04","publication_status":"published","type":"journal_article","abstract":[{"lang":"eng","text":"Solitons are localized waves formed by a balance of focusing and defocusing effects. These nonlinear waves exist in diverse forms of matter yet exhibit similar properties including stability, periodic recurrence and particle-like trajectories. One important property is soliton fission, a process by which an energetic higher-order soliton breaks apart due to dispersive or nonlinear perturbations. Here we demonstrate through both experiment and theory that nonlinear photocarrier generation can induce soliton fission. Using near-field measurements, we directly observe the nonlinear spatial and temporal evolution of optical pulses in situ in a nanophotonic semiconductor waveguide. We develop an analytic formalism describing the free-carrier dispersion (FCD) perturbation and show the experiment exceeds the minimum threshold by an order of magnitude. We confirm these observations with a numerical nonlinear Schrödinger equation model. These results provide a fundamental explanation and physical scaling of optical pulse evolution in free-carrier media and could enable improved supercontinuum sources in gas based and integrated semiconductor waveguides."}],"corr_author":"1","quality_controlled":"1","day":"15"},{"scopus_import":"1","_id":"14302","publisher":"American Chemical Society","article_processing_charge":"No","language":[{"iso":"eng"}],"date_published":"2016-09-01T00:00:00Z","page":"9156-9164","author":[{"last_name":"Stahl","first_name":"Evi","full_name":"Stahl, Evi"},{"full_name":"Praetorius, Florian M","first_name":"Florian M","id":"dfec9381-4341-11ee-8fd8-faa02bba7d62","last_name":"Praetorius"},{"first_name":"Carina C.","full_name":"de Oliveira Mann, Carina C.","last_name":"de Oliveira Mann"},{"last_name":"Hopfner","first_name":"Karl-Peter","full_name":"Hopfner, Karl-Peter"},{"last_name":"Dietz","full_name":"Dietz, Hendrik","first_name":"Hendrik"}],"publication_identifier":{"issn":["1936-0851"],"eissn":["1936-086X"]},"issue":"10","extern":"1","date_created":"2023-09-06T12:52:00Z","title":"Impact of heterogeneity and lattice bond strength on DNA triangle crystal growth","external_id":{"pmid":["27583560"]},"status":"public","publication":"ACS Nano","citation":{"apa":"Stahl, E., Praetorius, F. M., de Oliveira Mann, C. C., Hopfner, K.-P., &#38; Dietz, H. (2016). Impact of heterogeneity and lattice bond strength on DNA triangle crystal growth. <i>ACS Nano</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsnano.6b04787\">https://doi.org/10.1021/acsnano.6b04787</a>","mla":"Stahl, Evi, et al. “Impact of Heterogeneity and Lattice Bond Strength on DNA Triangle Crystal Growth.” <i>ACS Nano</i>, vol. 10, no. 10, American Chemical Society, 2016, pp. 9156–64, doi:<a href=\"https://doi.org/10.1021/acsnano.6b04787\">10.1021/acsnano.6b04787</a>.","chicago":"Stahl, Evi, Florian M Praetorius, Carina C. de Oliveira Mann, Karl-Peter Hopfner, and Hendrik Dietz. “Impact of Heterogeneity and Lattice Bond Strength on DNA Triangle Crystal Growth.” <i>ACS Nano</i>. American Chemical Society, 2016. <a href=\"https://doi.org/10.1021/acsnano.6b04787\">https://doi.org/10.1021/acsnano.6b04787</a>.","short":"E. Stahl, F.M. Praetorius, C.C. de Oliveira Mann, K.-P. Hopfner, H. Dietz, ACS Nano 10 (2016) 9156–9164.","ieee":"E. Stahl, F. M. Praetorius, C. C. de Oliveira Mann, K.-P. Hopfner, and H. Dietz, “Impact of heterogeneity and lattice bond strength on DNA triangle crystal growth,” <i>ACS Nano</i>, vol. 10, no. 10. American Chemical Society, pp. 9156–9164, 2016.","ama":"Stahl E, Praetorius FM, de Oliveira Mann CC, Hopfner K-P, Dietz H. Impact of heterogeneity and lattice bond strength on DNA triangle crystal growth. <i>ACS Nano</i>. 2016;10(10):9156-9164. doi:<a href=\"https://doi.org/10.1021/acsnano.6b04787\">10.1021/acsnano.6b04787</a>","ista":"Stahl E, Praetorius FM, de Oliveira Mann CC, Hopfner K-P, Dietz H. 2016. Impact of heterogeneity and lattice bond strength on DNA triangle crystal growth. ACS Nano. 10(10), 9156–9164."},"doi":"10.1021/acsnano.6b04787","volume":10,"date_updated":"2023-11-07T12:08:46Z","article_type":"original","intvolume":"        10","publication_status":"published","month":"09","year":"2016","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","quality_controlled":"1","abstract":[{"lang":"eng","text":"One key goal of DNA nanotechnology is the bottom-up construction of macroscopic crystalline materials. Beyond applications in fields such as photonics or plasmonics, DNA-based crystal matrices could possibly facilitate the diffraction-based structural analysis of guest molecules. Seeman and co-workers reported in 2009 the first designed crystal matrices based on a 38 kDa DNA triangle that was composed of seven chains. The crystal lattice was stabilized, unprecedentedly, by Watson–Crick base pairing. However, 3D crystallization of larger designed DNA objects that include more chains such as DNA origami remains an unsolved problem. Larger objects would offer more degrees of freedom and design options with respect to tailoring lattice geometry and for positioning other objects within a crystal lattice. The greater rigidity of multilayer DNA origami could also positively influence the diffractive properties of crystals composed of such particles. Here, we rationally explore the role of heterogeneity and Watson–Crick interaction strengths in crystal growth using 40 variants of the original DNA triangle as model multichain objects. Crystal growth of the triangle was remarkably robust despite massive chemical, geometrical, and thermodynamical sample heterogeneity that we introduced, but the crystal growth sensitively depended on the sequences of base pairs next to the Watson–Crick sticky ends of the triangle. Our results point to weak lattice interactions and high concentrations as decisive factors for achieving productive crystallization, while sample heterogeneity and impurities played a minor role."}],"type":"journal_article","oa_version":"None","pmid":1},{"article_processing_charge":"No","language":[{"iso":"eng"}],"publisher":"Proceedings of the National Academy of Sciences","author":[{"last_name":"Martin","full_name":"Martin, Thomas G.","first_name":"Thomas G."},{"first_name":"Tanmay A. M.","full_name":"Bharat, Tanmay A. M.","last_name":"Bharat"},{"last_name":"Joerger","first_name":"Andreas C.","full_name":"Joerger, Andreas C."},{"full_name":"Bai, Xiao-chen","first_name":"Xiao-chen","last_name":"Bai"},{"id":"dfec9381-4341-11ee-8fd8-faa02bba7d62","last_name":"Praetorius","full_name":"Praetorius, Florian M","first_name":"Florian M"},{"first_name":"Alan R.","full_name":"Fersht, Alan R.","last_name":"Fersht"},{"first_name":"Hendrik","full_name":"Dietz, Hendrik","last_name":"Dietz"},{"last_name":"Scheres","first_name":"Sjors H. W.","full_name":"Scheres, Sjors H. W."}],"page":"E7456-E7463","date_published":"2016-10-13T00:00:00Z","scopus_import":"1","_id":"14304","issue":"47","extern":"1","date_created":"2023-09-06T12:53:48Z","publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"date_updated":"2023-11-07T11:53:06Z","volume":113,"article_type":"original","intvolume":"       113","status":"public","title":"Design of a molecular support for cryo-EM structure determination","external_id":{"pmid":["27821763"]},"citation":{"ama":"Martin TG, Bharat TAM, Joerger AC, et al. Design of a molecular support for cryo-EM structure determination. <i>PNAS</i>. 2016;113(47):E7456-E7463. doi:<a href=\"https://doi.org/10.1073/pnas.1612720113\">10.1073/pnas.1612720113</a>","ista":"Martin TG, Bharat TAM, Joerger AC, Bai X, Praetorius FM, Fersht AR, Dietz H, Scheres SHW. 2016. Design of a molecular support for cryo-EM structure determination. PNAS. 113(47), E7456–E7463.","short":"T.G. Martin, T.A.M. Bharat, A.C. Joerger, X. Bai, F.M. Praetorius, A.R. Fersht, H. Dietz, S.H.W. Scheres, PNAS 113 (2016) E7456–E7463.","ieee":"T. G. Martin <i>et al.</i>, “Design of a molecular support for cryo-EM structure determination,” <i>PNAS</i>, vol. 113, no. 47. Proceedings of the National Academy of Sciences, pp. E7456–E7463, 2016.","apa":"Martin, T. G., Bharat, T. A. M., Joerger, A. C., Bai, X., Praetorius, F. M., Fersht, A. R., … Scheres, S. H. W. (2016). Design of a molecular support for cryo-EM structure determination. <i>PNAS</i>. Proceedings of the National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1612720113\">https://doi.org/10.1073/pnas.1612720113</a>","chicago":"Martin, Thomas G., Tanmay A. M. Bharat, Andreas C. Joerger, Xiao-chen Bai, Florian M Praetorius, Alan R. Fersht, Hendrik Dietz, and Sjors H. W. Scheres. “Design of a Molecular Support for Cryo-EM Structure Determination.” <i>PNAS</i>. Proceedings of the National Academy of Sciences, 2016. <a href=\"https://doi.org/10.1073/pnas.1612720113\">https://doi.org/10.1073/pnas.1612720113</a>.","mla":"Martin, Thomas G., et al. “Design of a Molecular Support for Cryo-EM Structure Determination.” <i>PNAS</i>, vol. 113, no. 47, Proceedings of the National Academy of Sciences, 2016, pp. E7456–63, doi:<a href=\"https://doi.org/10.1073/pnas.1612720113\">10.1073/pnas.1612720113</a>."},"doi":"10.1073/pnas.1612720113","publication":"PNAS","oa_version":"Published Version","pmid":1,"month":"10","year":"2016","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","quality_controlled":"1","day":"13","type":"journal_article","abstract":[{"lang":"eng","text":"Despite the recent rapid progress in cryo-electron microscopy (cryo-EM), there still exist ample opportunities for improvement in sample preparation. Macromolecular complexes may disassociate or adopt nonrandom orientations against the extended air–water interface that exists for a short time before the sample is frozen. We designed a hollow support structure using 3D DNA origami to protect complexes from the detrimental effects of cryo-EM sample preparation. For a first proof-of-principle, we concentrated on the transcription factor p53, which binds to specific DNA sequences on double-stranded DNA. The support structures spontaneously form monolayers of preoriented particles in a thin film of water, and offer advantages in particle picking and sorting. By controlling the position of the binding sequence on a single helix that spans the hollow support structure, we also sought to control the orientation of individual p53 complexes. Although the latter did not yet yield the desired results, the support structures did provide partial information about the relative orientations of individual p53 complexes. We used this information to calculate a tomographic 3D reconstruction, and refined this structure to a final resolution of ∼15 Å. This structure settles an ongoing debate about the symmetry of the p53 tetramer bound to DNA."}]},{"year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","publication_status":"published","quality_controlled":"1","day":"01","type":"journal_article","abstract":[{"text":"The rare socially parasitic butterfly Maculinea alcon occurs in two forms, which are characteristic of hygric or xeric habitats and which exploit different host plants and host ants. The status of these two forms has been the subject of considerable controversy. Populations of the two forms are usually spatially distinct, but at Răscruci in Romania both forms occur on the same site (syntopically). We examined the genetic differentiation between the two forms using eight microsatellite markers, and compared with a nearby hygric site, Şardu. Our results showed that while the two forms are strongly differentiated at Răscruci, it is the xeric form there that is most similar to the hygric form at Şardu, and Bayesian clustering algorithms suggest that these two populations have exchanged genes relatively recently. We found strong evidence for population substructuring, caused by high within host ant nest relatedness, indicating very limited dispersal of most ovipositing females, but not association with particular host ant species. Our results are consistent with the results of larger scale phylogeographic studies that suggest that the two forms represent local ecotypes specialising on different host plants, each with a distinct flowering phenology, providing a temporal rather than spatial barrier to gene flow.","lang":"eng"}],"oa_version":"Published Version","department":[{"_id":"SyCr"}],"status":"public","external_id":{"isi":["000374159800006"]},"title":"Host plant use drives genetic differentiation in syntopic populations of Maculinea alcon","citation":{"ista":"Tartally A, Kelager A, Fürst M, Nash D. 2016. Host plant use drives genetic differentiation in syntopic populations of Maculinea alcon. PeerJ. 2016(3), 1865.","ama":"Tartally A, Kelager A, Fürst M, Nash D. Host plant use drives genetic differentiation in syntopic populations of Maculinea alcon. <i>PeerJ</i>. 2016;2016(3). doi:<a href=\"https://doi.org/10.7717/peerj.1865\">10.7717/peerj.1865</a>","ieee":"A. Tartally, A. Kelager, M. Fürst, and D. Nash, “Host plant use drives genetic differentiation in syntopic populations of Maculinea alcon,” <i>PeerJ</i>, vol. 2016, no. 3. PeerJ, 2016.","short":"A. Tartally, A. Kelager, M. Fürst, D. Nash, PeerJ 2016 (2016).","mla":"Tartally, András, et al. “Host Plant Use Drives Genetic Differentiation in Syntopic Populations of Maculinea Alcon.” <i>PeerJ</i>, vol. 2016, no. 3, 1865, PeerJ, 2016, doi:<a href=\"https://doi.org/10.7717/peerj.1865\">10.7717/peerj.1865</a>.","chicago":"Tartally, András, Andreas Kelager, Matthias Fürst, and David Nash. “Host Plant Use Drives Genetic Differentiation in Syntopic Populations of Maculinea Alcon.” <i>PeerJ</i>. PeerJ, 2016. <a href=\"https://doi.org/10.7717/peerj.1865\">https://doi.org/10.7717/peerj.1865</a>.","apa":"Tartally, A., Kelager, A., Fürst, M., &#38; Nash, D. (2016). Host plant use drives genetic differentiation in syntopic populations of Maculinea alcon. <i>PeerJ</i>. PeerJ. <a href=\"https://doi.org/10.7717/peerj.1865\">https://doi.org/10.7717/peerj.1865</a>"},"doi":"10.7717/peerj.1865","publication":"PeerJ","date_updated":"2025-09-18T14:01:56Z","pubrep_id":"584","volume":2016,"oa":1,"publist_id":"5767","file":[{"file_id":"5272","checksum":"c27d898598a1e3d7f629607a309254e1","relation":"main_file","creator":"system","file_size":1216360,"date_created":"2018-12-12T10:17:19Z","content_type":"application/pdf","access_level":"open_access","file_name":"IST-2016-584-v1+1_peerj-1865.pdf","date_updated":"2020-07-14T12:44:53Z"}],"intvolume":"      2016","isi":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"issue":"3","date_created":"2018-12-11T11:51:59Z","ddc":["570"],"file_date_updated":"2020-07-14T12:44:53Z","scopus_import":"1","article_number":"1865","_id":"1431","has_accepted_license":"1","article_processing_charge":"No","language":[{"iso":"eng"}],"publisher":"PeerJ","author":[{"first_name":"András","full_name":"Tartally, András","last_name":"Tartally"},{"last_name":"Kelager","full_name":"Kelager, Andreas","first_name":"Andreas"},{"id":"393B1196-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3712-925X","last_name":"Fürst","full_name":"Fürst, Matthias","first_name":"Matthias"},{"first_name":"David","full_name":"Nash, David","last_name":"Nash"}],"date_published":"2016-01-01T00:00:00Z"},{"oa_version":"Preprint","arxiv":1,"publication_status":"published","month":"08","year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","abstract":[{"lang":"eng","text":"We prove that the system of subordination equations, defining the free additive convolution of two probability measures, is stable away from the edges of the support and blow-up singularities by showing that the recent smoothness condition of Kargin is always satisfied. As an application, we consider the local spectral statistics of the random matrix ensemble A+UBU⁎A+UBU⁎, where U is a Haar distributed random unitary or orthogonal matrix, and A and B   are deterministic matrices. In the bulk regime, we prove that the empirical spectral distribution of A+UBU⁎A+UBU⁎ concentrates around the free additive convolution of the spectral distributions of A and B   on scales down to N−2/3N−2/3."}],"type":"journal_article","day":"01","quality_controlled":"1","corr_author":"1","oa":1,"volume":271,"publist_id":"5764","date_updated":"2025-09-18T14:00:03Z","intvolume":"       271","title":"Local stability of the free additive convolution","external_id":{"isi":["000378013400009"],"arxiv":["1508.05905"]},"status":"public","department":[{"_id":"LaEr"}],"ec_funded":1,"publication":"Journal of Functional Analysis","doi":"10.1016/j.jfa.2016.04.006","citation":{"apa":"Bao, Z., Erdös, L., &#38; Schnelli, K. (2016). Local stability of the free additive convolution. <i>Journal of Functional Analysis</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.jfa.2016.04.006\">https://doi.org/10.1016/j.jfa.2016.04.006</a>","mla":"Bao, Zhigang, et al. “Local Stability of the Free Additive Convolution.” <i>Journal of Functional Analysis</i>, vol. 271, no. 3, Academic Press, 2016, pp. 672–719, doi:<a href=\"https://doi.org/10.1016/j.jfa.2016.04.006\">10.1016/j.jfa.2016.04.006</a>.","chicago":"Bao, Zhigang, László Erdös, and Kevin Schnelli. “Local Stability of the Free Additive Convolution.” <i>Journal of Functional Analysis</i>. Academic Press, 2016. <a href=\"https://doi.org/10.1016/j.jfa.2016.04.006\">https://doi.org/10.1016/j.jfa.2016.04.006</a>.","ama":"Bao Z, Erdös L, Schnelli K. Local stability of the free additive convolution. <i>Journal of Functional Analysis</i>. 2016;271(3):672-719. doi:<a href=\"https://doi.org/10.1016/j.jfa.2016.04.006\">10.1016/j.jfa.2016.04.006</a>","ista":"Bao Z, Erdös L, Schnelli K. 2016. Local stability of the free additive convolution. Journal of Functional Analysis. 271(3), 672–719.","short":"Z. Bao, L. Erdös, K. Schnelli, Journal of Functional Analysis 271 (2016) 672–719.","ieee":"Z. Bao, L. Erdös, and K. Schnelli, “Local stability of the free additive convolution,” <i>Journal of Functional Analysis</i>, vol. 271, no. 3. Academic Press, pp. 672–719, 2016."},"issue":"3","date_created":"2018-12-11T11:52:00Z","main_file_link":[{"url":"http://arxiv.org/abs/1508.05905","open_access":"1"}],"isi":1,"publisher":"Academic Press","language":[{"iso":"eng"}],"article_processing_charge":"No","date_published":"2016-08-01T00:00:00Z","author":[{"first_name":"Zhigang","full_name":"Bao, Zhigang","last_name":"Bao","orcid":"0000-0003-3036-1475","id":"442E6A6C-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Erdös","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","first_name":"László","full_name":"Erdös, László"},{"first_name":"Kevin","full_name":"Schnelli, Kevin","orcid":"0000-0003-0954-3231","last_name":"Schnelli","id":"434AD0AE-F248-11E8-B48F-1D18A9856A87"}],"page":"672 - 719","project":[{"grant_number":"338804","call_identifier":"FP7","name":"Random matrices, universality and disordered quantum systems","_id":"258DCDE6-B435-11E9-9278-68D0E5697425"}],"scopus_import":"1","_id":"1434"},{"status":"public","title":"P2Y receptors in synaptic transmission and plasticity: Therapeutic potential in cognitive dysfunction","external_id":{"isi":["000374056200001"]},"department":[{"_id":"PeJo"}],"citation":{"ama":"Guzmán J, Gerevich Z. P2Y receptors in synaptic transmission and plasticity: Therapeutic potential in cognitive dysfunction. <i>Neural Plasticity</i>. 2016;2016. doi:<a href=\"https://doi.org/10.1155/2016/1207393\">10.1155/2016/1207393</a>","ista":"Guzmán J, Gerevich Z. 2016. P2Y receptors in synaptic transmission and plasticity: Therapeutic potential in cognitive dysfunction. Neural Plasticity. 2016, 1207393.","short":"J. Guzmán, Z. Gerevich, Neural Plasticity 2016 (2016).","ieee":"J. Guzmán and Z. Gerevich, “P2Y receptors in synaptic transmission and plasticity: Therapeutic potential in cognitive dysfunction,” <i>Neural Plasticity</i>, vol. 2016. Hindawi Publishing Corporation, 2016.","apa":"Guzmán, J., &#38; Gerevich, Z. (2016). P2Y receptors in synaptic transmission and plasticity: Therapeutic potential in cognitive dysfunction. <i>Neural Plasticity</i>. Hindawi Publishing Corporation. <a href=\"https://doi.org/10.1155/2016/1207393\">https://doi.org/10.1155/2016/1207393</a>","mla":"Guzmán, José, and Zoltan Gerevich. “P2Y Receptors in Synaptic Transmission and Plasticity: Therapeutic Potential in Cognitive Dysfunction.” <i>Neural Plasticity</i>, vol. 2016, 1207393, Hindawi Publishing Corporation, 2016, doi:<a href=\"https://doi.org/10.1155/2016/1207393\">10.1155/2016/1207393</a>.","chicago":"Guzmán, José, and Zoltan Gerevich. “P2Y Receptors in Synaptic Transmission and Plasticity: Therapeutic Potential in Cognitive Dysfunction.” <i>Neural Plasticity</i>. Hindawi Publishing Corporation, 2016. <a href=\"https://doi.org/10.1155/2016/1207393\">https://doi.org/10.1155/2016/1207393</a>."},"doi":"10.1155/2016/1207393","publication":"Neural Plasticity","pubrep_id":"580","date_updated":"2025-09-18T11:45:18Z","volume":2016,"oa":1,"publist_id":"5762","intvolume":"      2016","file":[{"file_name":"IST-2016-580-v1+1_1207393.pdf","date_updated":"2020-07-14T12:44:54Z","access_level":"open_access","date_created":"2018-12-12T10:09:17Z","content_type":"application/pdf","file_size":1395180,"creator":"system","relation":"main_file","checksum":"8dc5c2f3d44d4775a6e7e3edb0d7a0da","file_id":"4740"}],"year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","publication_status":"published","type":"journal_article","abstract":[{"lang":"eng","text":"ATP released from neurons and astrocytes during neuronal activity or under pathophysiological circumstances is able to influence information flow in neuronal circuits by activation of ionotropic P2X and metabotropic P2Y receptors and subsequent modulation of cellular excitability, synaptic strength, and plasticity. In the present paper we review cellular and network effects of P2Y receptors in the brain. We show that P2Y receptors inhibit the release of neurotransmitters, modulate voltage- and ligand-gated ion channels, and differentially influence the induction of synaptic plasticity in the prefrontal cortex, hippocampus, and cerebellum. The findings discussed here may explain how P2Y1 receptor activation during brain injury, hypoxia, inflammation, schizophrenia, or Alzheimer's disease leads to an impairment of cognitive processes. Hence, it is suggested that the blockade of P2Y1 receptors may have therapeutic potential against cognitive disturbances in these states."}],"quality_controlled":"1","day":"01","oa_version":"Published Version","scopus_import":"1","_id":"1435","article_number":"1207393","language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"Hindawi Publishing Corporation","has_accepted_license":"1","author":[{"first_name":"José","full_name":"Guzmán, José","last_name":"Guzmán","orcid":"0000-0003-2209-5242","id":"30CC5506-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Gerevich","full_name":"Gerevich, Zoltan","first_name":"Zoltan"}],"date_published":"2016-01-01T00:00:00Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"isi":1,"file_date_updated":"2020-07-14T12:44:54Z","date_created":"2018-12-11T11:52:00Z","ddc":["570"]},{"issue":"1","date_created":"2018-12-11T11:52:00Z","ddc":["510","530"],"file_date_updated":"2020-07-14T12:44:54Z","isi":1,"tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"has_accepted_license":"1","language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"Elsevier","page":"1 - 30","author":[{"first_name":"Volker","full_name":"Bach, Volker","last_name":"Bach"},{"first_name":"Sébastien","full_name":"Breteaux, Sébastien","last_name":"Breteaux"},{"id":"40AC02DC-F248-11E8-B48F-1D18A9856A87","last_name":"Petrat","orcid":"0000-0002-9166-5889","full_name":"Petrat, Sören P","first_name":"Sören P"},{"full_name":"Pickl, Peter","first_name":"Peter","last_name":"Pickl"},{"last_name":"Tzaneteas","full_name":"Tzaneteas, Tim","first_name":"Tim"}],"date_published":"2016-01-01T00:00:00Z","scopus_import":"1","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","grant_number":"291734"}],"_id":"1436","oa_version":"Published Version","year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","publication_status":"published","quality_controlled":"1","day":"01","type":"journal_article","abstract":[{"lang":"eng","text":"We study the time evolution of a system of N spinless fermions in R3 which interact through a pair potential, e.g., the Coulomb potential. We compare the dynamics given by the solution to Schrödinger's equation with the time-dependent Hartree-Fock approximation, and we give an estimate for the accuracy of this approximation in terms of the kinetic energy of the system. This leads, in turn, to bounds in terms of the initial total energy of the system."}],"pubrep_id":"581","date_updated":"2025-09-18T12:31:28Z","oa":1,"publist_id":"5763","volume":105,"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","file":[{"checksum":"c5afe1f6935bc7f2b546adbde1d31a35","file_id":"4825","relation":"main_file","date_created":"2018-12-12T10:10:36Z","content_type":"application/pdf","access_level":"open_access","creator":"system","file_size":658491,"file_name":"IST-2016-581-v1+1_1-s2.0-S0021782415001191-main.pdf","date_updated":"2020-07-14T12:44:54Z"}],"intvolume":"       105","department":[{"_id":"RoSe"}],"status":"public","title":"Kinetic energy estimates for the accuracy of the time-dependent Hartree-Fock approximation with Coulomb interaction","external_id":{"isi":["000366773900001"]},"doi":"10.1016/j.matpur.2015.09.003","citation":{"ista":"Bach V, Breteaux S, Petrat SP, Pickl P, Tzaneteas T. 2016. Kinetic energy estimates for the accuracy of the time-dependent Hartree-Fock approximation with Coulomb interaction. Journal de Mathématiques Pures et Appliquées. 105(1), 1–30.","ama":"Bach V, Breteaux S, Petrat SP, Pickl P, Tzaneteas T. Kinetic energy estimates for the accuracy of the time-dependent Hartree-Fock approximation with Coulomb interaction. <i>Journal de Mathématiques Pures et Appliquées</i>. 2016;105(1):1-30. doi:<a href=\"https://doi.org/10.1016/j.matpur.2015.09.003\">10.1016/j.matpur.2015.09.003</a>","ieee":"V. Bach, S. Breteaux, S. P. Petrat, P. Pickl, and T. Tzaneteas, “Kinetic energy estimates for the accuracy of the time-dependent Hartree-Fock approximation with Coulomb interaction,” <i>Journal de Mathématiques Pures et Appliquées</i>, vol. 105, no. 1. Elsevier, pp. 1–30, 2016.","short":"V. Bach, S. Breteaux, S.P. Petrat, P. Pickl, T. Tzaneteas, Journal de Mathématiques Pures et Appliquées 105 (2016) 1–30.","chicago":"Bach, Volker, Sébastien Breteaux, Sören P Petrat, Peter Pickl, and Tim Tzaneteas. “Kinetic Energy Estimates for the Accuracy of the Time-Dependent Hartree-Fock Approximation with Coulomb Interaction.” <i>Journal de Mathématiques Pures et Appliquées</i>. Elsevier, 2016. <a href=\"https://doi.org/10.1016/j.matpur.2015.09.003\">https://doi.org/10.1016/j.matpur.2015.09.003</a>.","mla":"Bach, Volker, et al. “Kinetic Energy Estimates for the Accuracy of the Time-Dependent Hartree-Fock Approximation with Coulomb Interaction.” <i>Journal de Mathématiques Pures et Appliquées</i>, vol. 105, no. 1, Elsevier, 2016, pp. 1–30, doi:<a href=\"https://doi.org/10.1016/j.matpur.2015.09.003\">10.1016/j.matpur.2015.09.003</a>.","apa":"Bach, V., Breteaux, S., Petrat, S. P., Pickl, P., &#38; Tzaneteas, T. (2016). Kinetic energy estimates for the accuracy of the time-dependent Hartree-Fock approximation with Coulomb interaction. <i>Journal de Mathématiques Pures et Appliquées</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.matpur.2015.09.003\">https://doi.org/10.1016/j.matpur.2015.09.003</a>"},"publication":"Journal de Mathématiques Pures et Appliquées","ec_funded":1},{"arxiv":1,"oa_version":"Preprint","quality_controlled":"1","day":"11","type":"conference","abstract":[{"text":"In this paper, we consider termination of probabilistic programs with real-valued variables. The questions concerned are: (a) qualitative ones that ask (i) whether the program terminates with probability 1 (almost-sure termination) and (ii) whether the expected termination time is finite (finite termination); (b) quantitative ones that ask (i) to approximate the expected termination time (expectation problem) and (ii) to compute a bound B such that the probability to terminate after B steps decreases exponentially (concentration problem). To solve these questions, we utilize the notion of ranking supermartingales which is a powerful approach for proving termination of probabilistic programs. In detail, we focus on algorithmic synthesis of linear ranking-supermartingales over affine probabilistic programs (APP's) with both angelic and demonic non-determinism. An important subclass of APP's is LRAPP which is defined as the class of all APP's over which a linear ranking-supermartingale exists. Our main contributions are as follows. Firstly, we show that the membership problem of LRAPP (i) can be decided in polynomial time for APP's with at most demonic non-determinism, and (ii) is NP-hard and in PSPACE for APP's with angelic non-determinism; moreover, the NP-hardness result holds already for APP's without probability and demonic non-determinism. Secondly, we show that the concentration problem over LRAPP can be solved in the same complexity as for the membership problem of LRAPP. Finally, we show that the expectation problem over LRAPP can be solved in 2EXPTIME and is PSPACE-hard even for APP's without probability and non-determinism (i.e., deterministic programs). Our experimental results demonstrate the effectiveness of our approach to answer the qualitative and quantitative questions over APP's with at most demonic non-determinism.","lang":"eng"}],"related_material":{"record":[{"id":"5993","relation":"later_version","status":"public"}]},"year":"2016","month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","date_updated":"2025-04-15T08:12:22Z","publist_id":"5760","volume":"20-22","oa":1,"doi":"10.1145/2837614.2837639","citation":{"chicago":"Chatterjee, Krishnendu, Hongfei Fu, Petr Novotný, and Rouzbeh Hasheminezhad. “Algorithmic Analysis of Qualitative and Quantitative Termination Problems for Affine Probabilistic Programs,” 20–22:327–42. ACM, 2016. <a href=\"https://doi.org/10.1145/2837614.2837639\">https://doi.org/10.1145/2837614.2837639</a>.","mla":"Chatterjee, Krishnendu, et al. <i>Algorithmic Analysis of Qualitative and Quantitative Termination Problems for Affine Probabilistic Programs</i>. Vol. 20–22, ACM, 2016, pp. 327–42, doi:<a href=\"https://doi.org/10.1145/2837614.2837639\">10.1145/2837614.2837639</a>.","apa":"Chatterjee, K., Fu, H., Novotný, P., &#38; Hasheminezhad, R. (2016). Algorithmic analysis of qualitative and quantitative termination problems for affine probabilistic programs (Vol. 20–22, pp. 327–342). Presented at the POPL: Principles of Programming Languages, St. Petersburg, FL, USA: ACM. <a href=\"https://doi.org/10.1145/2837614.2837639\">https://doi.org/10.1145/2837614.2837639</a>","ieee":"K. Chatterjee, H. Fu, P. Novotný, and R. Hasheminezhad, “Algorithmic analysis of qualitative and quantitative termination problems for affine probabilistic programs,” presented at the POPL: Principles of Programming Languages, St. Petersburg, FL, USA, 2016, vol. 20–22, pp. 327–342.","short":"K. Chatterjee, H. Fu, P. Novotný, R. Hasheminezhad, in:, ACM, 2016, pp. 327–342.","ista":"Chatterjee K, Fu H, Novotný P, Hasheminezhad R. 2016. Algorithmic analysis of qualitative and quantitative termination problems for affine probabilistic programs. POPL: Principles of Programming Languages, POPL, vol. 20–22, 327–342.","ama":"Chatterjee K, Fu H, Novotný P, Hasheminezhad R. Algorithmic analysis of qualitative and quantitative termination problems for affine probabilistic programs. In: Vol 20-22. ACM; 2016:327-342. doi:<a href=\"https://doi.org/10.1145/2837614.2837639\">10.1145/2837614.2837639</a>"},"ec_funded":1,"department":[{"_id":"KrCh"}],"status":"public","title":"Algorithmic analysis of qualitative and quantitative termination problems for affine probabilistic programs","external_id":{"arxiv":["1510.08517"]},"date_created":"2018-12-11T11:52:01Z","acknowledgement":"Supported by the Natural Science Foundation of China (NSFC) under Grant No. 61532019 ","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1510.08517"}],"conference":{"start_date":"2016-01-20","end_date":"2016-01-22","location":"St. Petersburg, FL, USA","name":"POPL: Principles of Programming Languages"},"page":"327 - 342","author":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu"},{"id":"3AAD03D6-F248-11E8-B48F-1D18A9856A87","last_name":"Fu","full_name":"Fu, Hongfei","first_name":"Hongfei"},{"id":"3CC3B868-F248-11E8-B48F-1D18A9856A87","last_name":"Novotny","full_name":"Novotny, Petr","first_name":"Petr"},{"first_name":"Rouzbeh","full_name":"Hasheminezhad, Rouzbeh","last_name":"Hasheminezhad"}],"date_published":"2016-01-11T00:00:00Z","language":[{"iso":"eng"}],"publisher":"ACM","_id":"1438","scopus_import":1,"project":[{"grant_number":"P 23499-N23","call_identifier":"FWF","name":"Modern Graph Algorithmic Techniques in Formal Verification","_id":"2584A770-B435-11E9-9278-68D0E5697425"},{"_id":"25832EC2-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Rigorous Systems Engineering","grant_number":"S 11407_N23"},{"grant_number":"279307","call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","grant_number":"291734"}],"alternative_title":["POPL"]},{"date_updated":"2025-09-18T11:44:23Z","volume":"20-22","oa":1,"publist_id":"5759","status":"public","title":"PSYNC: A partially synchronous language for fault-tolerant distributed algorithms","external_id":{"isi":["000374053600033"]},"department":[{"_id":"ToHe"}],"citation":{"ieee":"C. Dragoi, T. A. Henzinger, and D. Zufferey, “PSYNC: A partially synchronous language for fault-tolerant distributed algorithms,” presented at the POPL: Principles of Programming Languages, St. Petersburg, FL, USA, 2016, vol. 20–22, pp. 400–415.","short":"C. Dragoi, T.A. Henzinger, D. Zufferey, in:, ACM, 2016, pp. 400–415.","ista":"Dragoi C, Henzinger TA, Zufferey D. 2016. PSYNC: A partially synchronous language for fault-tolerant distributed algorithms. POPL: Principles of Programming Languages, ACM SIGPLAN Notices, vol. 20–22, 400–415.","ama":"Dragoi C, Henzinger TA, Zufferey D. PSYNC: A partially synchronous language for fault-tolerant distributed algorithms. In: Vol 20-22. ACM; 2016:400-415. doi:<a href=\"https://doi.org/10.1145/2837614.2837650\">10.1145/2837614.2837650</a>","mla":"Dragoi, Cezara, et al. <i>PSYNC: A Partially Synchronous Language for Fault-Tolerant Distributed Algorithms</i>. Vol. 20–22, ACM, 2016, pp. 400–15, doi:<a href=\"https://doi.org/10.1145/2837614.2837650\">10.1145/2837614.2837650</a>.","chicago":"Dragoi, Cezara, Thomas A Henzinger, and Damien Zufferey. “PSYNC: A Partially Synchronous Language for Fault-Tolerant Distributed Algorithms,” 20–22:400–415. ACM, 2016. <a href=\"https://doi.org/10.1145/2837614.2837650\">https://doi.org/10.1145/2837614.2837650</a>.","apa":"Dragoi, C., Henzinger, T. A., &#38; Zufferey, D. (2016). PSYNC: A partially synchronous language for fault-tolerant distributed algorithms (Vol. 20–22, pp. 400–415). Presented at the POPL: Principles of Programming Languages, St. Petersburg, FL, USA: ACM. <a href=\"https://doi.org/10.1145/2837614.2837650\">https://doi.org/10.1145/2837614.2837650</a>"},"doi":"10.1145/2837614.2837650","ec_funded":1,"oa_version":"Preprint","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"01","year":"2016","publication_status":"published","type":"conference","abstract":[{"lang":"eng","text":"Fault-tolerant distributed algorithms play an important role in many critical/high-availability applications. These algorithms are notoriously difficult to implement correctly, due to asynchronous communication and the occurrence of faults, such as the network dropping messages or computers crashing. We introduce PSYNC, a domain specific language based on the Heard-Of model, which views asynchronous faulty systems as synchronous ones with an adversarial environment that simulates asynchrony and faults by dropping messages. We define a runtime system for PSYNC that efficiently executes on asynchronous networks. We formalize the relation between the runtime system and PSYNC in terms of observational refinement. The high-level lockstep abstraction introduced by PSYNC simplifies the design and implementation of fault-tolerant distributed algorithms and enables automated formal verification. We have implemented an embedding of PSYNC in the SCALA programming language with a runtime system for asynchronous networks. We show the applicability of PSYNC by implementing several important fault-tolerant distributed algorithms and we compare the implementation of consensus algorithms in PSYNC against implementations in other languages in terms of code size, runtime efficiency, and verification."}],"quality_controlled":"1","day":"11","language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"ACM","conference":{"end_date":"2016-01-22","start_date":"2016-01-20","location":"St. Petersburg, FL, USA","name":"POPL: Principles of Programming Languages"},"author":[{"id":"2B2B5ED0-F248-11E8-B48F-1D18A9856A87","last_name":"Dragoi","full_name":"Dragoi, Cezara","first_name":"Cezara"},{"full_name":"Henzinger, Thomas A","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000−0002−2985−7724","last_name":"Henzinger"},{"first_name":"Damien","full_name":"Zufferey, Damien","orcid":"0000-0002-3197-8736","last_name":"Zufferey","id":"4397AC76-F248-11E8-B48F-1D18A9856A87"}],"page":"400 - 415","date_published":"2016-01-11T00:00:00Z","project":[{"name":"Quantitative Reactive Modeling","call_identifier":"FP7","_id":"25EE3708-B435-11E9-9278-68D0E5697425","grant_number":"267989"},{"_id":"25F42A32-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Formal methods for the design and analysis of complex systems","grant_number":"Z211"},{"call_identifier":"FWF","name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23"}],"alternative_title":["ACM SIGPLAN Notices"],"scopus_import":"1","_id":"1439","date_created":"2018-12-11T11:52:01Z","main_file_link":[{"url":"https://hal.inria.fr/hal-01251199/","open_access":"1"}],"acknowledgement":"Damien Zufferey was supported by DARPA (Grants FA8650-11-C-7192 and FA8650-15-C-7564) and NSF (Grant CCF-1138967). ","isi":1},{"external_id":{"isi":["000373567700001"]},"title":"Light at the end of the protein: Crystal structure of a C-terminal light-sensing domain","status":"public","department":[{"_id":"HaJa"}],"publication":"Structure","ec_funded":1,"doi":"10.1016/j.str.2016.01.002","citation":{"mla":"Janovjak, Harald L. “Light at the End of the Protein: Crystal Structure of a C-Terminal Light-Sensing Domain.” <i>Structure</i>, vol. 24, no. 2, Cell Press, 2016, pp. 213–15, doi:<a href=\"https://doi.org/10.1016/j.str.2016.01.002\">10.1016/j.str.2016.01.002</a>.","chicago":"Janovjak, Harald L. “Light at the End of the Protein: Crystal Structure of a C-Terminal Light-Sensing Domain.” <i>Structure</i>. Cell Press, 2016. <a href=\"https://doi.org/10.1016/j.str.2016.01.002\">https://doi.org/10.1016/j.str.2016.01.002</a>.","apa":"Janovjak, H. L. (2016). Light at the end of the protein: Crystal structure of a C-terminal light-sensing domain. <i>Structure</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.str.2016.01.002\">https://doi.org/10.1016/j.str.2016.01.002</a>","ista":"Janovjak HL. 2016. Light at the end of the protein: Crystal structure of a C-terminal light-sensing domain. Structure. 24(2), 213–215.","ama":"Janovjak HL. Light at the end of the protein: Crystal structure of a C-terminal light-sensing domain. <i>Structure</i>. 2016;24(2):213-215. doi:<a href=\"https://doi.org/10.1016/j.str.2016.01.002\">10.1016/j.str.2016.01.002</a>","ieee":"H. L. Janovjak, “Light at the end of the protein: Crystal structure of a C-terminal light-sensing domain,” <i>Structure</i>, vol. 24, no. 2. Cell Press, pp. 213–215, 2016.","short":"H.L. Janovjak, Structure 24 (2016) 213–215."},"volume":24,"publist_id":"5756","date_updated":"2025-09-18T11:43:50Z","intvolume":"        24","publication_status":"published","year":"2016","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"02","type":"journal_article","day":"02","corr_author":"1","quality_controlled":"1","oa_version":"None","project":[{"_id":"255BFFFA-B435-11E9-9278-68D0E5697425","name":"In situ real-time imaging of neurotransmitter signaling using designer optical sensors","grant_number":"RGY0084/2012"},{"name":"Microbial Ion Channels for Synthetic Neurobiology","call_identifier":"FP7","_id":"25548C20-B435-11E9-9278-68D0E5697425","grant_number":"303564"},{"_id":"255A6082-B435-11E9-9278-68D0E5697425","name":"Molecular Drug Targets","call_identifier":"FWF","grant_number":"W1232-B24"}],"scopus_import":"1","_id":"1440","publisher":"Cell Press","language":[{"iso":"eng"}],"article_processing_charge":"No","date_published":"2016-02-02T00:00:00Z","author":[{"first_name":"Harald L","full_name":"Janovjak, Harald L","last_name":"Janovjak","orcid":"0000-0002-8023-9315","id":"33BA6C30-F248-11E8-B48F-1D18A9856A87"}],"page":"213 - 215","acknowledgement":"The author thanks Banerjee et al. (2016) for providing coordinates prior to public release and apologizes to colleagues whose work was not cited or discussed due to the limited space available. The author is supported by grants from EU FP7 (CIG-303564), HFSP (RGY0084_2012), and FWF (W1232).","isi":1,"issue":"2","date_created":"2018-12-11T11:52:02Z"},{"isi":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"issue":"1","date_created":"2018-12-11T11:52:04Z","ddc":["000"],"file_date_updated":"2020-07-14T12:44:55Z","scopus_import":"1","_id":"1446","has_accepted_license":"1","language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"Springer","page":"213 - 232","author":[{"full_name":"Calatrava Moreno, Maria","first_name":"Maria","last_name":"Calatrava Moreno"},{"last_name":"Auzinger","orcid":"0000-0002-1546-3265","id":"4718F954-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas","full_name":"Auzinger, Thomas"},{"first_name":"Hannes","full_name":"Werthner, Hannes","last_name":"Werthner"}],"date_published":"2016-04-01T00:00:00Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2016","month":"04","publication_status":"published","quality_controlled":"1","day":"01","type":"journal_article","abstract":[{"text":"The accuracy of interdisciplinarity measurements is directly related to the quality of the underlying bibliographic data. Existing indicators of interdisciplinarity are not capable of reflecting the inaccuracies introduced by incorrect and incomplete records because correct and complete bibliographic data can rarely be obtained. This is the case for the Rao–Stirling index, which cannot handle references that are not categorized into disciplinary fields. We introduce a method that addresses this problem. It extends the Rao–Stirling index to acknowledge missing data by calculating its interval of uncertainty using computational optimization. The evaluation of our method indicates that the uncertainty interval is not only useful for estimating the inaccuracy of interdisciplinarity measurements, but it also delivers slightly more accurate aggregated interdisciplinarity measurements than the Rao–Stirling index.","lang":"eng"}],"related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1007/s11192-016-1902-9"}]},"oa_version":"Published Version","department":[{"_id":"BeBi"}],"status":"public","external_id":{"isi":["000373187000011"]},"title":"On the uncertainty of interdisciplinarity measurements due to incomplete bibliographic data","citation":{"ama":"Calatrava Moreno M, Auzinger T, Werthner H. On the uncertainty of interdisciplinarity measurements due to incomplete bibliographic data. <i>Scientometrics</i>. 2016;107(1):213-232. doi:<a href=\"https://doi.org/10.1007/s11192-016-1842-4\">10.1007/s11192-016-1842-4</a>","ista":"Calatrava Moreno M, Auzinger T, Werthner H. 2016. On the uncertainty of interdisciplinarity measurements due to incomplete bibliographic data. Scientometrics. 107(1), 213–232.","short":"M. Calatrava Moreno, T. Auzinger, H. Werthner, Scientometrics 107 (2016) 213–232.","ieee":"M. Calatrava Moreno, T. Auzinger, and H. Werthner, “On the uncertainty of interdisciplinarity measurements due to incomplete bibliographic data,” <i>Scientometrics</i>, vol. 107, no. 1. Springer, pp. 213–232, 2016.","apa":"Calatrava Moreno, M., Auzinger, T., &#38; Werthner, H. (2016). On the uncertainty of interdisciplinarity measurements due to incomplete bibliographic data. <i>Scientometrics</i>. Springer. <a href=\"https://doi.org/10.1007/s11192-016-1842-4\">https://doi.org/10.1007/s11192-016-1842-4</a>","mla":"Calatrava Moreno, Maria, et al. “On the Uncertainty of Interdisciplinarity Measurements Due to Incomplete Bibliographic Data.” <i>Scientometrics</i>, vol. 107, no. 1, Springer, 2016, pp. 213–32, doi:<a href=\"https://doi.org/10.1007/s11192-016-1842-4\">10.1007/s11192-016-1842-4</a>.","chicago":"Calatrava Moreno, Maria, Thomas Auzinger, and Hannes Werthner. “On the Uncertainty of Interdisciplinarity Measurements Due to Incomplete Bibliographic Data.” <i>Scientometrics</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s11192-016-1842-4\">https://doi.org/10.1007/s11192-016-1842-4</a>."},"doi":"10.1007/s11192-016-1842-4","publication":"Scientometrics","date_updated":"2025-09-18T11:42:34Z","pubrep_id":"530","oa":1,"publist_id":"5750","volume":107,"intvolume":"       107","file":[{"content_type":"application/pdf","date_created":"2018-12-12T10:10:56Z","access_level":"open_access","creator":"system","file_size":806035,"file_name":"IST-2016-530-v1+1_s11192-016-1842-4.pdf","date_updated":"2020-07-14T12:44:55Z","file_id":"4848","checksum":"32d46268588b87d9b686492018e6a2b2","relation":"main_file"}]},{"oa_version":"Preprint","arxiv":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","month":"06","year":"2016","publication_status":"published","type":"journal_article","abstract":[{"lang":"eng","text":"We develop a new and systematic method for proving entropic Ricci curvature lower bounds for Markov chains on discrete sets. Using different methods, such bounds have recently been obtained in several examples (e.g., 1-dimensional birth and death chains, product chains, Bernoulli–Laplace models, and random transposition models). However, a general method to obtain discrete Ricci bounds had been lacking. Our method covers all of the examples above. In addition we obtain new Ricci curvature bounds for zero-range processes on the complete graph. The method is inspired by recent work of Caputo, Dai Pra and Posta on discrete functional inequalities."}],"quality_controlled":"1","corr_author":"1","day":"01","date_updated":"2025-09-18T11:41:58Z","oa":1,"volume":26,"publist_id":"5748","intvolume":"        26","status":"public","title":"Entropic Ricci curvature bounds for discrete interacting systems","external_id":{"arxiv":["1501.00562"],"isi":["000378215800016"]},"department":[{"_id":"JaMa"}],"doi":"10.1214/15-AAP1133","citation":{"apa":"Fathi, M., &#38; Maas, J. (2016). Entropic Ricci curvature bounds for discrete interacting systems. <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/15-AAP1133\">https://doi.org/10.1214/15-AAP1133</a>","chicago":"Fathi, Max, and Jan Maas. “Entropic Ricci Curvature Bounds for Discrete Interacting Systems.” <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics, 2016. <a href=\"https://doi.org/10.1214/15-AAP1133\">https://doi.org/10.1214/15-AAP1133</a>.","mla":"Fathi, Max, and Jan Maas. “Entropic Ricci Curvature Bounds for Discrete Interacting Systems.” <i>The Annals of Applied Probability</i>, vol. 26, no. 3, Institute of Mathematical Statistics, 2016, pp. 1774–806, doi:<a href=\"https://doi.org/10.1214/15-AAP1133\">10.1214/15-AAP1133</a>.","short":"M. Fathi, J. Maas, The Annals of Applied Probability 26 (2016) 1774–1806.","ieee":"M. Fathi and J. Maas, “Entropic Ricci curvature bounds for discrete interacting systems,” <i>The Annals of Applied Probability</i>, vol. 26, no. 3. Institute of Mathematical Statistics, pp. 1774–1806, 2016.","ama":"Fathi M, Maas J. Entropic Ricci curvature bounds for discrete interacting systems. <i>The Annals of Applied Probability</i>. 2016;26(3):1774-1806. doi:<a href=\"https://doi.org/10.1214/15-AAP1133\">10.1214/15-AAP1133</a>","ista":"Fathi M, Maas J. 2016. Entropic Ricci curvature bounds for discrete interacting systems. The Annals of Applied Probability. 26(3), 1774–1806."},"publication":"The Annals of Applied Probability","issue":"3","date_created":"2018-12-11T11:52:05Z","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1501.00562"}],"acknowledgement":"Supported by the German Research Foundation through the Collaborative Research Center 1060\r\nThe Mathematics of Emergent Effects and the Hausdorff Center for Mathematics. Part of this work has been done while M. Fathi visited J. Maas at the University of Bonn in July 2014.We would like to thank the referees for their careful reading of the manuscript. ","isi":1,"language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"Institute of Mathematical Statistics","page":"1774 - 1806","author":[{"first_name":"Max","full_name":"Fathi, Max","last_name":"Fathi"},{"full_name":"Maas, Jan","first_name":"Jan","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338","last_name":"Maas"}],"date_published":"2016-06-01T00:00:00Z","scopus_import":"1","_id":"1448"},{"date_created":"2018-12-11T11:54:02Z","issue":"1","isi":1,"acknowledgement":"This work has been partially supported by the European Research Council under the European Unions Seventh Framework Programme (FP7/2007-2013)/ERC grant agreement no. 616160.","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1210.0508"}],"author":[{"full_name":"Kolmogorov, Vladimir","first_name":"Vladimir","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","last_name":"Kolmogorov"},{"first_name":"Rustem","full_name":"Takhanov, Rustem","last_name":"Takhanov","id":"2CCAC26C-F248-11E8-B48F-1D18A9856A87"}],"page":"17 - 46","date_published":"2016-09-01T00:00:00Z","language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"Springer","_id":"1794","scopus_import":"1","project":[{"_id":"25FBA906-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Discrete Optimization in Computer Vision: Theory and Practice","grant_number":"616160"}],"arxiv":1,"oa_version":"Preprint","corr_author":"1","quality_controlled":"1","day":"01","type":"journal_article","related_material":{"record":[{"id":"2272","relation":"earlier_version","status":"public"}]},"abstract":[{"text":"We consider Conditional random fields (CRFs) with pattern-based potentials defined on a chain. In this model the energy of a string (labeling) (Formula presented.) is the sum of terms over intervals [i, j] where each term is non-zero only if the substring (Formula presented.) equals a prespecified pattern w. Such CRFs can be naturally applied to many sequence tagging problems. We present efficient algorithms for the three standard inference tasks in a CRF, namely computing (i) the partition function, (ii) marginals, and (iii) computing the MAP. Their complexities are respectively (Formula presented.), (Formula presented.) and (Formula presented.) where L is the combined length of input patterns, (Formula presented.) is the maximum length of a pattern, and D is the input alphabet. This improves on the previous algorithms of Ye et al. (NIPS, 2009) whose complexities are respectively (Formula presented.), (Formula presented.) and (Formula presented.), where (Formula presented.) is the number of input patterns. In addition, we give an efficient algorithm for sampling, and revisit the case of MAP with non-positive weights.","lang":"eng"}],"month":"09","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2016","publication_status":"published","intvolume":"        76","date_updated":"2025-09-29T14:28:47Z","oa":1,"publist_id":"5316","volume":76,"citation":{"apa":"Kolmogorov, V., &#38; Takhanov, R. (2016). Inference algorithms for pattern-based CRFs on sequence data. <i>Algorithmica</i>. Springer. <a href=\"https://doi.org/10.1007/s00453-015-0017-7\">https://doi.org/10.1007/s00453-015-0017-7</a>","mla":"Kolmogorov, Vladimir, and Rustem Takhanov. “Inference Algorithms for Pattern-Based CRFs on Sequence Data.” <i>Algorithmica</i>, vol. 76, no. 1, Springer, 2016, pp. 17–46, doi:<a href=\"https://doi.org/10.1007/s00453-015-0017-7\">10.1007/s00453-015-0017-7</a>.","chicago":"Kolmogorov, Vladimir, and Rustem Takhanov. “Inference Algorithms for Pattern-Based CRFs on Sequence Data.” <i>Algorithmica</i>. Springer, 2016. <a href=\"https://doi.org/10.1007/s00453-015-0017-7\">https://doi.org/10.1007/s00453-015-0017-7</a>.","ama":"Kolmogorov V, Takhanov R. Inference algorithms for pattern-based CRFs on sequence data. <i>Algorithmica</i>. 2016;76(1):17-46. doi:<a href=\"https://doi.org/10.1007/s00453-015-0017-7\">10.1007/s00453-015-0017-7</a>","ista":"Kolmogorov V, Takhanov R. 2016. Inference algorithms for pattern-based CRFs on sequence data. Algorithmica. 76(1), 17–46.","short":"V. Kolmogorov, R. Takhanov, Algorithmica 76 (2016) 17–46.","ieee":"V. Kolmogorov and R. Takhanov, “Inference algorithms for pattern-based CRFs on sequence data,” <i>Algorithmica</i>, vol. 76, no. 1. Springer, pp. 17–46, 2016."},"doi":"10.1007/s00453-015-0017-7","ec_funded":1,"publication":"Algorithmica","department":[{"_id":"VlKo"}],"status":"public","external_id":{"isi":["000381149500002"],"arxiv":["1210.0508"]},"title":"Inference algorithms for pattern-based CRFs on sequence data"},{"publication_identifier":{"eissn":["1520-5126"],"issn":["0002-7863"]},"issue":"49","extern":"1","date_created":"2024-09-09T09:19:46Z","scopus_import":"1","_id":"17952","language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"American Chemical Society","page":"16159-16164","author":[{"last_name":"Li","first_name":"Haixing","full_name":"Li, Haixing"},{"last_name":"Kim","first_name":"Nathaniel T.","full_name":"Kim, Nathaniel T."},{"full_name":"Su, Timothy A.","first_name":"Timothy A.","last_name":"Su"},{"last_name":"Steigerwald","first_name":"Michael L.","full_name":"Steigerwald, Michael L."},{"last_name":"Nuckolls","first_name":"Colin","full_name":"Nuckolls, Colin"},{"full_name":"Darancet, Pierre","first_name":"Pierre","last_name":"Darancet"},{"first_name":"James L.","full_name":"Leighton, James L.","last_name":"Leighton"},{"first_name":"Latha","full_name":"Venkataraman, Latha","orcid":"0000-0002-6957-6089","last_name":"Venkataraman","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf"}],"date_published":"2016-11-18T00:00:00Z","year":"2016","month":"11","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","quality_controlled":"1","day":"18","type":"journal_article","abstract":[{"text":"The stability of chemical bonds can be studied experimentally by rupturing single molecule junctions under applied voltage. Here, we compare voltage-induced bond rupture in two Si–Si backbones: one has no alternate conductive pathway whereas the other contains an additional naphthyl pathway in parallel to the Si–Si bond. We show that in contrast to the first system, the second can conduct through the naphthyl group when the Si–Si bond is ruptured using an applied voltage. We investigate this voltage induced Si–Si bond rupture by ab initio density functional theory calculations and molecular dynamics simulations that ultimately demonstrate that the excitation of molecular vibrational modes by tunneling electrons leads to homolytic Si–Si bond rupture.","lang":"eng"}],"oa_version":"None","pmid":1,"status":"public","external_id":{"pmid":["27960303"]},"title":"Mechanism for Si–Si bond rupture in single molecule junctions","OA_type":"closed access","citation":{"apa":"Li, H., Kim, N. T., Su, T. A., Steigerwald, M. L., Nuckolls, C., Darancet, P., … Venkataraman, L. (2016). Mechanism for Si–Si bond rupture in single molecule junctions. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.6b10700\">https://doi.org/10.1021/jacs.6b10700</a>","chicago":"Li, Haixing, Nathaniel T. Kim, Timothy A. Su, Michael L. Steigerwald, Colin Nuckolls, Pierre Darancet, James L. Leighton, and Latha Venkataraman. “Mechanism for Si–Si Bond Rupture in Single Molecule Junctions.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2016. <a href=\"https://doi.org/10.1021/jacs.6b10700\">https://doi.org/10.1021/jacs.6b10700</a>.","mla":"Li, Haixing, et al. “Mechanism for Si–Si Bond Rupture in Single Molecule Junctions.” <i>Journal of the American Chemical Society</i>, vol. 138, no. 49, American Chemical Society, 2016, pp. 16159–64, doi:<a href=\"https://doi.org/10.1021/jacs.6b10700\">10.1021/jacs.6b10700</a>.","ama":"Li H, Kim NT, Su TA, et al. Mechanism for Si–Si bond rupture in single molecule junctions. <i>Journal of the American Chemical Society</i>. 2016;138(49):16159-16164. doi:<a href=\"https://doi.org/10.1021/jacs.6b10700\">10.1021/jacs.6b10700</a>","ista":"Li H, Kim NT, Su TA, Steigerwald ML, Nuckolls C, Darancet P, Leighton JL, Venkataraman L. 2016. Mechanism for Si–Si bond rupture in single molecule junctions. Journal of the American Chemical Society. 138(49), 16159–16164.","short":"H. Li, N.T. Kim, T.A. Su, M.L. Steigerwald, C. Nuckolls, P. Darancet, J.L. Leighton, L. Venkataraman, Journal of the American Chemical Society 138 (2016) 16159–16164.","ieee":"H. Li <i>et al.</i>, “Mechanism for Si–Si bond rupture in single molecule junctions,” <i>Journal of the American Chemical Society</i>, vol. 138, no. 49. American Chemical Society, pp. 16159–16164, 2016."},"doi":"10.1021/jacs.6b10700","publication":"Journal of the American Chemical Society","date_updated":"2024-12-18T08:36:48Z","volume":138,"article_type":"original","intvolume":"       138"},{"type":"journal_article","abstract":[{"text":"Guidelines to predict trends in the electrical conductance of molecules have been developed for the π-system of conjugated systems. Little is known, however, about the conductance of the underlying σ-systems because the π-system usually dominates the transport. Here we study a family of bipyridine-based molecules using STM-break junction experiments and density functional theory transport calculations. We use different lengths and substitution patterns to probe the role of both the σ-system and the π-system in controlling conductance. By exploiting the destructive interference feature found in the π-system of the meta-coupled six-membered aromatic rings, we show that the conductance of the σ-system of a meta-coupled molecule can be probed directly and can even exceed that of its para-coupled analog. These results add to the understanding of the conductance through the chemically hidden σ-electrons.","lang":"eng"}],"quality_controlled":"1","day":"10","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2016","month":"11","publication_status":"published","pmid":1,"oa_version":"None","doi":"10.1021/acs.jpclett.6b02494","citation":{"apa":"Borges, A., Fung, E.-D., Ng, F., Venkataraman, L., &#38; Solomon, G. C. (2016). Probing the conductance of the σ-system of bipyridine using destructive interference. <i>The Journal of Physical Chemistry Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jpclett.6b02494\">https://doi.org/10.1021/acs.jpclett.6b02494</a>","chicago":"Borges, Anders, E-Dean Fung, Fay Ng, Latha Venkataraman, and Gemma C. Solomon. “Probing the Conductance of the σ-System of Bipyridine Using Destructive Interference.” <i>The Journal of Physical Chemistry Letters</i>. American Chemical Society, 2016. <a href=\"https://doi.org/10.1021/acs.jpclett.6b02494\">https://doi.org/10.1021/acs.jpclett.6b02494</a>.","mla":"Borges, Anders, et al. “Probing the Conductance of the σ-System of Bipyridine Using Destructive Interference.” <i>The Journal of Physical Chemistry Letters</i>, vol. 7, no. 23, American Chemical Society, 2016, pp. 4825–29, doi:<a href=\"https://doi.org/10.1021/acs.jpclett.6b02494\">10.1021/acs.jpclett.6b02494</a>.","ama":"Borges A, Fung E-D, Ng F, Venkataraman L, Solomon GC. Probing the conductance of the σ-system of bipyridine using destructive interference. <i>The Journal of Physical Chemistry Letters</i>. 2016;7(23):4825-4829. doi:<a href=\"https://doi.org/10.1021/acs.jpclett.6b02494\">10.1021/acs.jpclett.6b02494</a>","ista":"Borges A, Fung E-D, Ng F, Venkataraman L, Solomon GC. 2016. Probing the conductance of the σ-system of bipyridine using destructive interference. The Journal of Physical Chemistry Letters. 7(23), 4825–4829.","short":"A. Borges, E.-D. Fung, F. Ng, L. Venkataraman, G.C. Solomon, The Journal of Physical Chemistry Letters 7 (2016) 4825–4829.","ieee":"A. Borges, E.-D. Fung, F. Ng, L. Venkataraman, and G. C. Solomon, “Probing the conductance of the σ-system of bipyridine using destructive interference,” <i>The Journal of Physical Chemistry Letters</i>, vol. 7, no. 23. American Chemical Society, pp. 4825–4829, 2016."},"publication":"The Journal of Physical Chemistry Letters","OA_type":"closed access","status":"public","external_id":{"pmid":["27934052"]},"title":"Probing the conductance of the σ-system of bipyridine using destructive interference","intvolume":"         7","article_type":"letter_note","date_updated":"2024-12-18T08:47:29Z","volume":7,"publication_identifier":{"eissn":["1948-7185"]},"date_created":"2024-09-09T09:22:48Z","extern":"1","issue":"23","_id":"17954","scopus_import":"1","page":"4825-4829","author":[{"last_name":"Borges","first_name":"Anders","full_name":"Borges, Anders"},{"last_name":"Fung","full_name":"Fung, E-Dean","first_name":"E-Dean"},{"last_name":"Ng","first_name":"Fay","full_name":"Ng, Fay"},{"orcid":"0000-0002-6957-6089","last_name":"Venkataraman","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","first_name":"Latha","full_name":"Venkataraman, Latha"},{"last_name":"Solomon","full_name":"Solomon, Gemma C.","first_name":"Gemma C."}],"date_published":"2016-11-10T00:00:00Z","article_processing_charge":"No","language":[{"iso":"eng"}],"publisher":"American Chemical Society"},{"scopus_import":"1","_id":"17955","OA_place":"publisher","language":[{"iso":"eng"}],"article_processing_charge":"Yes (in subscription journal)","publisher":"Royal Society of Chemistry","page":"16357-16362","author":[{"full_name":"Koepf, Matthieu","first_name":"Matthieu","last_name":"Koepf"},{"first_name":"Christopher","full_name":"Koenigsmann, Christopher","last_name":"Koenigsmann"},{"last_name":"Ding","first_name":"Wendu","full_name":"Ding, Wendu"},{"last_name":"Batra","full_name":"Batra, Arunbah","first_name":"Arunbah"},{"last_name":"Negre","first_name":"Christian F. A.","full_name":"Negre, Christian F. A."},{"last_name":"Venkataraman","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","first_name":"Latha","full_name":"Venkataraman, Latha"},{"full_name":"Brudvig, Gary W.","first_name":"Gary W.","last_name":"Brudvig"},{"last_name":"Batista","first_name":"Victor S.","full_name":"Batista, Victor S."},{"first_name":"Charles A.","full_name":"Schmuttenmaer, Charles A.","last_name":"Schmuttenmaer"},{"full_name":"Crabtree, Robert H.","first_name":"Robert H.","last_name":"Crabtree"}],"date_published":"2016-08-16T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1039/C6NR04830G"}],"publication_identifier":{"eissn":["2040-3372"],"issn":["2040-3364"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/3.0/legalcode","short":"CC BY-NC (3.0)","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 3.0 Unported (CC BY-NC 3.0)"},"issue":"36","extern":"1","date_created":"2024-09-09T09:23:39Z","status":"public","title":"Controlling the rectification properties of molecular junctions through molecule–electrode coupling","OA_type":"hybrid","citation":{"ama":"Koepf M, Koenigsmann C, Ding W, et al. Controlling the rectification properties of molecular junctions through molecule–electrode coupling. <i>Nanoscale</i>. 2016;8(36):16357-16362. doi:<a href=\"https://doi.org/10.1039/c6nr04830g\">10.1039/c6nr04830g</a>","ista":"Koepf M, Koenigsmann C, Ding W, Batra A, Negre CFA, Venkataraman L, Brudvig GW, Batista VS, Schmuttenmaer CA, Crabtree RH. 2016. Controlling the rectification properties of molecular junctions through molecule–electrode coupling. Nanoscale. 8(36), 16357–16362.","short":"M. Koepf, C. Koenigsmann, W. Ding, A. Batra, C.F.A. Negre, L. Venkataraman, G.W. Brudvig, V.S. Batista, C.A. Schmuttenmaer, R.H. Crabtree, Nanoscale 8 (2016) 16357–16362.","ieee":"M. Koepf <i>et al.</i>, “Controlling the rectification properties of molecular junctions through molecule–electrode coupling,” <i>Nanoscale</i>, vol. 8, no. 36. Royal Society of Chemistry, pp. 16357–16362, 2016.","apa":"Koepf, M., Koenigsmann, C., Ding, W., Batra, A., Negre, C. F. A., Venkataraman, L., … Crabtree, R. H. (2016). Controlling the rectification properties of molecular junctions through molecule–electrode coupling. <i>Nanoscale</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c6nr04830g\">https://doi.org/10.1039/c6nr04830g</a>","chicago":"Koepf, Matthieu, Christopher Koenigsmann, Wendu Ding, Arunbah Batra, Christian F. A. Negre, Latha Venkataraman, Gary W. Brudvig, Victor S. Batista, Charles A. Schmuttenmaer, and Robert H. Crabtree. “Controlling the Rectification Properties of Molecular Junctions through Molecule–Electrode Coupling.” <i>Nanoscale</i>. Royal Society of Chemistry, 2016. <a href=\"https://doi.org/10.1039/c6nr04830g\">https://doi.org/10.1039/c6nr04830g</a>.","mla":"Koepf, Matthieu, et al. “Controlling the Rectification Properties of Molecular Junctions through Molecule–Electrode Coupling.” <i>Nanoscale</i>, vol. 8, no. 36, Royal Society of Chemistry, 2016, pp. 16357–62, doi:<a href=\"https://doi.org/10.1039/c6nr04830g\">10.1039/c6nr04830g</a>."},"doi":"10.1039/c6nr04830g","publication":"Nanoscale","date_updated":"2024-12-18T08:50:22Z","oa":1,"volume":8,"article_type":"original","intvolume":"         8","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"08","year":"2016","publication_status":"published","quality_controlled":"1","day":"16","type":"journal_article","abstract":[{"lang":"eng","text":"The development of molecular components functioning as switches, rectifiers or amplifiers is a great challenge in molecular electronics. A desirable property of such components is functional robustness, meaning that the intrinsic functionality of components must be preserved regardless of the strategy used to integrate them into the final assemblies. Here, this issue is investigated for molecular diodes based on N-phenylbenzamide (NPBA) backbones. The transport properties of molecular junctions derived from NPBA are characterized while varying the nature of the functional groups interfacing the backbone and the gold electrodes required for break-junction measurements. Combining experimental and theoretical methods, it is shown that at low bias (<0.85 V) transport is determined by the same frontier molecular orbital originating from the NPBA core, regardless of the anchoring group employed. The magnitude of rectification, however, is strongly dependent on the strength of the electronic coupling at the gold–NPBA interface and on the spatial distribution of the local density of states of the dominant transport channel of the molecular junction."}],"oa_version":"Published Version"},{"publication_identifier":{"eissn":["1520-5126"],"issn":["0002-7863"]},"date_created":"2024-09-09T09:25:25Z","extern":"1","issue":"36","_id":"17956","scopus_import":"1","page":"11505-11508","author":[{"last_name":"Kim","full_name":"Kim, Nathaniel T.","first_name":"Nathaniel T."},{"last_name":"Li","full_name":"Li, Haixing","first_name":"Haixing"},{"id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","orcid":"0000-0002-6957-6089","last_name":"Venkataraman","full_name":"Venkataraman, Latha","first_name":"Latha"},{"last_name":"Leighton","full_name":"Leighton, James L.","first_name":"James L."}],"date_published":"2016-08-26T00:00:00Z","language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"American Chemical Society","type":"journal_article","abstract":[{"text":"A highly conducting electronic contact between a strained disilane and Au is demonstrated through scanning tunneling microscope-based single-molecule measurements. Conformationally locked cis diastereomers of bis(sulfide)-anchor-equipped 1,2-disilaacenaphthenes readily form high-conducting junctions in which the two sulfide anchors bind in a bipodal fashion to one gold electrode, providing enough stability for a stable electrical contact between the Si–Si σ bond and the other electrode.","lang":"eng"}],"quality_controlled":"1","day":"26","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2016","month":"08","publication_status":"published","pmid":1,"oa_version":"None","citation":{"apa":"Kim, N. T., Li, H., Venkataraman, L., &#38; Leighton, J. L. (2016). High-conductance pathways in ring-strained disilanes by qay of direct σ-Si–Si to Au coordination. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.6b07825\">https://doi.org/10.1021/jacs.6b07825</a>","mla":"Kim, Nathaniel T., et al. “High-Conductance Pathways in Ring-Strained Disilanes by Qay of Direct σ-Si–Si to Au Coordination.” <i>Journal of the American Chemical Society</i>, vol. 138, no. 36, American Chemical Society, 2016, pp. 11505–08, doi:<a href=\"https://doi.org/10.1021/jacs.6b07825\">10.1021/jacs.6b07825</a>.","chicago":"Kim, Nathaniel T., Haixing Li, Latha Venkataraman, and James L. Leighton. “High-Conductance Pathways in Ring-Strained Disilanes by Qay of Direct σ-Si–Si to Au Coordination.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2016. <a href=\"https://doi.org/10.1021/jacs.6b07825\">https://doi.org/10.1021/jacs.6b07825</a>.","short":"N.T. Kim, H. Li, L. Venkataraman, J.L. Leighton, Journal of the American Chemical Society 138 (2016) 11505–11508.","ieee":"N. T. Kim, H. Li, L. Venkataraman, and J. L. Leighton, “High-conductance pathways in ring-strained disilanes by qay of direct σ-Si–Si to Au coordination,” <i>Journal of the American Chemical Society</i>, vol. 138, no. 36. American Chemical Society, pp. 11505–11508, 2016.","ama":"Kim NT, Li H, Venkataraman L, Leighton JL. High-conductance pathways in ring-strained disilanes by qay of direct σ-Si–Si to Au coordination. <i>Journal of the American Chemical Society</i>. 2016;138(36):11505-11508. doi:<a href=\"https://doi.org/10.1021/jacs.6b07825\">10.1021/jacs.6b07825</a>","ista":"Kim NT, Li H, Venkataraman L, Leighton JL. 2016. High-conductance pathways in ring-strained disilanes by qay of direct σ-Si–Si to Au coordination. Journal of the American Chemical Society. 138(36), 11505–11508."},"doi":"10.1021/jacs.6b07825","publication":"Journal of the American Chemical Society","OA_type":"closed access","status":"public","title":"High-conductance pathways in ring-strained disilanes by qay of direct σ-Si–Si to Au coordination","external_id":{"pmid":["27563932"]},"intvolume":"       138","article_type":"original","date_updated":"2024-12-18T08:53:39Z","volume":138}]