[{"page":"259-290","scopus_import":"1","day":"05","doi":"10.1007/978-3-032-12293-3_9","year":"2025","author":[{"first_name":"Shweta","last_name":"Agrawal","full_name":"Agrawal, Shweta"},{"last_name":"Modi","first_name":"Anuja","full_name":"Modi, Anuja"},{"id":"dc8f1524-403e-11ee-bf07-9649ad996e21","full_name":"Yadav, Anshu","last_name":"Yadav","first_name":"Anshu"},{"full_name":"Yamada, Shota","last_name":"Yamada","first_name":"Shota"}],"title":"Zeroizing attacks against evasive and circular evasive LWE","month":"12","date_created":"2025-12-21T23:01:33Z","main_file_link":[{"url":"https://eprint.iacr.org/2025/375","open_access":"1"}],"abstract":[{"text":"We develop new attacks against the Evasive LWE family of assumptions, in both the public and private-coin regime. To the best of our knowledge, ours are the first attacks against Evasive LWE in the public-coin regime, for any instantiation from the family. Our attacks are summarized below.\r\n\r\nPublic-Coin Attacks.\r\n1.The recent work by Hseih, Lin and Luo [17] constructed the first Attribute Based Encryption (ABE) for unbounded depth circuits by relying on the “circular” evasive LWE assumption. This assumption has been popularly considered as a safe, public-coin instance of Evasive LWE in contrast to its “private-coin” cousins (for instance, see [10, 11]).\r\nWe provide the first attack against this assumption, challenging the widely held belief that this is a public-coin assumption.\r\n2. We demonstrate a counter-example against vanilla public-coin evasive LWE by Wee [26] in an unnatural parameter regime. Our attack crucially relies on the error in the pre-condition being larger than the error in the post-condition, necessitating a refinement of the assumption.\r\n\r\nPrivate-Coin Attacks.\r\n1. The recent work by Agrawal, Kumari and Yamada [2] constructed the first functional encryption scheme for pseudorandom functionalities (PRFE) and extended this to obfuscation for pseudorandom functionalities (PRIO) [4] by relying on private-coin evasive LWE. We provide a new attack against the assumption stated in the first posting of their work (subsequently refined to avoid these attacks).\r\n2. The recent work by Branco et al. [8] (concurrently to [4]) provides a construction of obfuscation for pseudorandom functionalities by relying on private-coin evasive LWE. We provide a new attack against their stated assumption.\r\n3. Branco et al. [8] showed that there exist contrived, “self-referential” classes of pseudorandom functionalities for which pseudorandom obfuscation cannot exist. We extend their techniques to develop an analogous result for pseudorandom functional encryption.\r\n\r\nWhile Evasive LWE was developed to specifically avoid “zeroizing attacks”, our work shows that in certain settings, such attacks can still apply.","lang":"eng"}],"type":"conference","oa":1,"status":"public","quality_controlled":"1","department":[{"_id":"KrPi"}],"citation":{"apa":"Agrawal, S., Modi, A., Yadav, A., &#38; Yamada, S. (2025). Zeroizing attacks against evasive and circular evasive LWE. In <i>23rd International Conference on Theory of Cryptography</i> (Vol. 16269, pp. 259–290). Aarhus, Denmark: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-032-12293-3_9\">https://doi.org/10.1007/978-3-032-12293-3_9</a>","ama":"Agrawal S, Modi A, Yadav A, Yamada S. Zeroizing attacks against evasive and circular evasive LWE. In: <i>23rd International Conference on Theory of Cryptography</i>. Vol 16269. Springer Nature; 2025:259-290. doi:<a href=\"https://doi.org/10.1007/978-3-032-12293-3_9\">10.1007/978-3-032-12293-3_9</a>","mla":"Agrawal, Shweta, et al. “Zeroizing Attacks against Evasive and Circular Evasive LWE.” <i>23rd International Conference on Theory of Cryptography</i>, vol. 16269, Springer Nature, 2025, pp. 259–90, doi:<a href=\"https://doi.org/10.1007/978-3-032-12293-3_9\">10.1007/978-3-032-12293-3_9</a>.","short":"S. Agrawal, A. Modi, A. Yadav, S. Yamada, in:, 23rd International Conference on Theory of Cryptography, Springer Nature, 2025, pp. 259–290.","ista":"Agrawal S, Modi A, Yadav A, Yamada S. 2025. Zeroizing attacks against evasive and circular evasive LWE. 23rd International Conference on Theory of Cryptography. TCC: Theory of Cryptography, LNCS, vol. 16269, 259–290.","chicago":"Agrawal, Shweta, Anuja Modi, Anshu Yadav, and Shota Yamada. “Zeroizing Attacks against Evasive and Circular Evasive LWE.” In <i>23rd International Conference on Theory of Cryptography</i>, 16269:259–90. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/978-3-032-12293-3_9\">https://doi.org/10.1007/978-3-032-12293-3_9</a>.","ieee":"S. Agrawal, A. Modi, A. Yadav, and S. Yamada, “Zeroizing attacks against evasive and circular evasive LWE,” in <i>23rd International Conference on Theory of Cryptography</i>, Aarhus, Denmark, 2025, vol. 16269, pp. 259–290."},"publication_identifier":{"isbn":["9783032122926"],"eissn":["1611-3349"],"issn":["0302-9743"]},"language":[{"iso":"eng"}],"OA_type":"green","OA_place":"repository","_id":"20845","article_processing_charge":"No","date_updated":"2025-12-29T11:51:13Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"     16269","publication":"23rd International Conference on Theory of Cryptography","conference":{"end_date":"2025-12-05","name":"TCC: Theory of Cryptography","location":"Aarhus, Denmark","start_date":"2025-12-01"},"alternative_title":["LNCS"],"acknowledgement":"We thank Rachel Lin for expressing concern about the applicability of “HJL-style” attacks [15] on the construction in [2] during a talk by the first author about [2]. This was the starting point of the investigation that led us to develop the attack in [5, Sec 4.1]. The first author also thanks Hoeteck Wee for sharing his rationale for introducing evasive LWE.\r\nThe first author is supported by the CyStar center of excellence, the VHAR faculty chair, and the C3iHub fellowship. The third author thanks Cystar, IIT Madras, for supporting a visit to IIT Madras during which the collaboration was initiated. The 4th author is partly supported by JST CREST Grant Number JPMJCR22M1.","publisher":"Springer Nature","publication_status":"published","volume":16269,"date_published":"2025-12-05T00:00:00Z","oa_version":"Preprint"},{"volume":16271,"date_published":"2025-12-05T00:00:00Z","oa_version":"Preprint","publication_status":"published","publisher":"Springer Nature","acknowledgement":"We thank Jonas Steinbach and Gertjan De Mulder for helpful discussions on BIP 32, Dennis Hofheinz and Julia Kastner for helpful discussions on early prototypes of our CVRF, and Klaus Kraßnitzer for running pairing benchmarks on his MacBook Pro.\r\nChristoph U. Günther: This research was funded in whole or in part by the Austrian Science Fund (FWF) 10.55776/F85. For open access purposes, the author has applied a CC BY public copyright license to any author-accepted manuscript version arising from this submission.","alternative_title":["LNCS"],"conference":{"start_date":"2025-12-01","location":"Aarhus, Denmark","name":"TCC: Theory of Cryptography","end_date":"2025-12-05"},"intvolume":"     16271","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"23rd International Conference on Theory of Cryptography","_id":"20846","date_updated":"2025-12-29T11:11:29Z","article_processing_charge":"No","OA_type":"green","OA_place":"repository","language":[{"iso":"eng"}],"publication_identifier":{"isbn":["9783032122896"],"issn":["0302-9743"],"eissn":["1611-3349"]},"citation":{"chicago":"Brandt, Nicholas, Miguel Cueto Noval, Christoph Ullrich Günther, Akin Ünal, and Stella Wohnig. “Constrained Verifiable Random Functions without Obfuscation and Friends.” In <i>23rd International Conference on Theory of Cryptography</i>, 16271:478–511. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/978-3-032-12290-2_16\">https://doi.org/10.1007/978-3-032-12290-2_16</a>.","ieee":"N. Brandt, M. Cueto Noval, C. U. Günther, A. Ünal, and S. Wohnig, “Constrained verifiable random functions without obfuscation and friends,” in <i>23rd International Conference on Theory of Cryptography</i>, Aarhus, Denmark, 2025, vol. 16271, pp. 478–511.","apa":"Brandt, N., Cueto Noval, M., Günther, C. U., Ünal, A., &#38; Wohnig, S. (2025). Constrained verifiable random functions without obfuscation and friends. In <i>23rd International Conference on Theory of Cryptography</i> (Vol. 16271, pp. 478–511). Aarhus, Denmark: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-032-12290-2_16\">https://doi.org/10.1007/978-3-032-12290-2_16</a>","mla":"Brandt, Nicholas, et al. “Constrained Verifiable Random Functions without Obfuscation and Friends.” <i>23rd International Conference on Theory of Cryptography</i>, vol. 16271, Springer Nature, 2025, pp. 478–511, doi:<a href=\"https://doi.org/10.1007/978-3-032-12290-2_16\">10.1007/978-3-032-12290-2_16</a>.","ama":"Brandt N, Cueto Noval M, Günther CU, Ünal A, Wohnig S. Constrained verifiable random functions without obfuscation and friends. In: <i>23rd International Conference on Theory of Cryptography</i>. Vol 16271. Springer Nature; 2025:478-511. doi:<a href=\"https://doi.org/10.1007/978-3-032-12290-2_16\">10.1007/978-3-032-12290-2_16</a>","short":"N. Brandt, M. Cueto Noval, C.U. Günther, A. Ünal, S. Wohnig, in:, 23rd International Conference on Theory of Cryptography, Springer Nature, 2025, pp. 478–511.","ista":"Brandt N, Cueto Noval M, Günther CU, Ünal A, Wohnig S. 2025. Constrained verifiable random functions without obfuscation and friends. 23rd International Conference on Theory of Cryptography. TCC: Theory of Cryptography, LNCS, vol. 16271, 478–511."},"department":[{"_id":"KrPi"}],"status":"public","quality_controlled":"1","corr_author":"1","type":"conference","oa":1,"date_created":"2025-12-21T23:01:34Z","abstract":[{"text":"CVRFs are PRFs that unify the properties of verifiable and constrained PRFs. Since they were introduced concurrently by Fuchsbauer and Chandran-Raghuraman-Vinayagamurthy in 2014, it has been an open problem to construct CVRFs without using heavy machinery such as multilinear maps, obfuscation or functional encryption.\r\nWe solve this problem by constructing a prefix-constrained verifiable PRF that does not rely on the aforementioned assumptions. Essentially, our construction is a verifiable version of the Goldreich-Goldwasser-Micali PRF. To achieve verifiability we leverage degree-2 algebraic PRGs and bilinear groups. In short, proofs consist of intermediate values of the Goldreich-Goldwasser-Micali PRF raised to the exponents of group elements. These outputs can be verified using pairings since the underlying PRG is of degree 2.\r\nWe prove the selective security of our construction under the Decisional Square Diffie-Hellman (DSDH) assumption and a new assumption, which we dub recursive Decisional Diffie-Hellman (recursive DDH).\r\nWe prove the soundness of recursive DDH in the generic group model assuming the hardness of the Multivariate Quadratic (MQ) problem and a new variant thereof, which we call MQ+.\r\nLast, in terms of applications, we observe that our CVRF is also an exponent (C)VRF in the plain model. Exponent VRFs were recently introduced by Boneh et al. (Eurocrypt’25) with various applications to threshold cryptography in mind. In addition to that, we give further applications for prefix-CVRFs in the blockchain setting, namely, stake-pooling and compressible randomness beacons.","lang":"eng"}],"main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2025/1045"}],"title":"Constrained verifiable random functions without obfuscation and friends","month":"12","day":"05","page":"478-511","scopus_import":"1","author":[{"full_name":"Brandt, Nicholas","first_name":"Nicholas","last_name":"Brandt"},{"orcid":"0000-0002-2505-4246","first_name":"Miguel","last_name":"Cueto Noval","full_name":"Cueto Noval, Miguel","id":"ffc563a3-f6e0-11ea-865d-e3cce03d17cc"},{"id":"ec98511c-eb8e-11eb-b029-edd25d7271a1","full_name":"Günther, Christoph Ullrich","first_name":"Christoph Ullrich","last_name":"Günther"},{"id":"f6b56fb6-dc63-11ee-9dbf-f6780863a85a","full_name":"Ünal, Akin","last_name":"Ünal","first_name":"Akin","orcid":"0000-0002-8929-0221"},{"first_name":"Stella","last_name":"Wohnig","full_name":"Wohnig, Stella"}],"project":[{"_id":"34a34d57-11ca-11ed-8bc3-a2688a8724e1","grant_number":"F8509","name":"Security and Privacy by Design for Complex Systems"}],"doi":"10.1007/978-3-032-12290-2_16","year":"2025"},{"publication_status":"published","publisher":"American Physical Society","date_published":"2025-12-01T00:00:00Z","volume":112,"ec_funded":1,"oa_version":"Published Version","file_date_updated":"2025-12-29T11:15:42Z","intvolume":"       112","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Physical Review E","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"acknowledgement":"This research was funded in whole or in part by the Austrian Science Fund (FWF) [Grant DOI: 10.55776/ESP298]. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant\r\nAgreement No. 949120). This research was supported by the Scientific Service Units of The Institute of Science and Technology Austria (ISTA) through resources provided by the Miba Machine Shop, Nanofabrication Facility, Scientific Computing Facility, and Lab Support Facility. We wish to acknowledge the crucial contributions of Alexandre Morin in getting the project off the ground, and Jack Merrin for creating the SU-8 deposition protocol used in the construction of our\r\ncells. We also wish to thank Kimberley Modic and Hamza Nasir for their work on single-particle characterization. ","issue":"6","_id":"20847","date_updated":"2025-12-29T11:19:34Z","article_processing_charge":"Yes (via OA deal)","publication_identifier":{"issn":["2470-0045"],"eissn":["2470-0053"]},"citation":{"chicago":"Fitzgerald, Eavan, Cécile Clavaud, Debasish Das, Isaac C Lenton, and Scott R Waitukaitis. “Rolling at Right Angles: Magnetic Anisotropy Enables Dual-Anisotropic Active Matter.” <i>Physical Review E</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/1ss8-31rb\">https://doi.org/10.1103/1ss8-31rb</a>.","ieee":"E. Fitzgerald, C. Clavaud, D. Das, I. C. Lenton, and S. R. Waitukaitis, “Rolling at right angles: Magnetic anisotropy enables dual-anisotropic active matter,” <i>Physical Review E</i>, vol. 112, no. 6. American Physical Society, 2025.","apa":"Fitzgerald, E., Clavaud, C., Das, D., Lenton, I. C., &#38; Waitukaitis, S. R. (2025). Rolling at right angles: Magnetic anisotropy enables dual-anisotropic active matter. <i>Physical Review E</i>. American Physical Society. <a href=\"https://doi.org/10.1103/1ss8-31rb\">https://doi.org/10.1103/1ss8-31rb</a>","ama":"Fitzgerald E, Clavaud C, Das D, Lenton IC, Waitukaitis SR. Rolling at right angles: Magnetic anisotropy enables dual-anisotropic active matter. <i>Physical Review E</i>. 2025;112(6). doi:<a href=\"https://doi.org/10.1103/1ss8-31rb\">10.1103/1ss8-31rb</a>","mla":"Fitzgerald, Eavan, et al. “Rolling at Right Angles: Magnetic Anisotropy Enables Dual-Anisotropic Active Matter.” <i>Physical Review E</i>, vol. 112, no. 6, 065418, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/1ss8-31rb\">10.1103/1ss8-31rb</a>.","short":"E. Fitzgerald, C. Clavaud, D. Das, I.C. Lenton, S.R. Waitukaitis, Physical Review E 112 (2025).","ista":"Fitzgerald E, Clavaud C, Das D, Lenton IC, Waitukaitis SR. 2025. Rolling at right angles: Magnetic anisotropy enables dual-anisotropic active matter. Physical Review E. 112(6), 065418."},"department":[{"_id":"ScWa"}],"external_id":{"arxiv":["2508.05643"]},"language":[{"iso":"eng"}],"OA_place":"publisher","OA_type":"hybrid","has_accepted_license":"1","corr_author":"1","status":"public","arxiv":1,"quality_controlled":"1","date_created":"2025-12-21T23:01:34Z","abstract":[{"text":"We report on an experimental active matter system with motion restricted to four cardinal directions. Our particles are magnetite-doped colloidal spheres driven by the Quincke electrorotational instability. The absence of a magnetic field (|𝑩|=0) leads to circular trajectories interspersed with short spontaneous runs. Intermediate fields (|𝑩|≲20mT) linearize the motion along the axis perpendicular to 𝑩. At high magnetic fields, we observe the surprising emergence of a second, distinct linearization along the axis parallel to 𝑩. With numerical simulations, we show that this behavior can be explained by anisotropic magnetic susceptibility.","lang":"eng"}],"type":"journal_article","oa":1,"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"},{"_id":"ScienComp"},{"_id":"LifeSc"}],"file":[{"content_type":"application/pdf","date_created":"2025-12-29T11:15:42Z","file_name":"2025_PhysReviewE_Fitzgerald.pdf","success":1,"relation":"main_file","date_updated":"2025-12-29T11:15:42Z","creator":"dernst","access_level":"open_access","file_size":2131491,"checksum":"d593e933f976c3f3cde37ad66539d57d","file_id":"20862"}],"ddc":["530"],"PlanS_conform":"1","title":"Rolling at right angles: Magnetic anisotropy enables dual-anisotropic active matter","month":"12","day":"01","scopus_import":"1","author":[{"id":"2df8ab8f-080d-11ed-979a-bfe651ca3afa","full_name":"Fitzgerald, Eavan","last_name":"Fitzgerald","first_name":"Eavan"},{"full_name":"Clavaud, Cécile","id":"5f654c5d-04a1-11eb-ab36-ba9ffec58bd8","orcid":"0000-0002-1843-3803","first_name":"Cécile","last_name":"Clavaud"},{"last_name":"Das","first_name":"Debasish","full_name":"Das, Debasish"},{"id":"a550210f-223c-11ec-8182-e2d45e817efb","full_name":"Lenton, Isaac C","last_name":"Lenton","first_name":"Isaac C","orcid":"0000-0002-5010-6984"},{"last_name":"Waitukaitis","first_name":"Scott R","orcid":"0000-0002-2299-3176","full_name":"Waitukaitis, Scott R","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87"}],"project":[{"name":"MixQUIckR: Mixing with QUIncke Rollers","grant_number":"E 298","_id":"bd8eede5-d553-11ed-ba76-eaded0d13485"},{"name":"Tribocharge: a multi-scale approach to an enduring problem in physics","grant_number":"949120","call_identifier":"H2020","_id":"0aa60e99-070f-11eb-9043-a6de6bdc3afa"}],"doi":"10.1103/1ss8-31rb","year":"2025","article_type":"original","article_number":"065418"},{"month":"12","title":"Mutation–selection–drift balance models of complex diseases","ddc":["570"],"article_number":"iyaf220","article_type":"original","year":"2025","doi":"10.1093/genetics/iyaf220","author":[{"first_name":"Jeremy J.","last_name":"Berg","full_name":"Berg, Jeremy J."},{"first_name":"Xinyi","last_name":"Li","full_name":"Li, Xinyi"},{"last_name":"Riall","first_name":"Kellen","full_name":"Riall, Kellen"},{"full_name":"Hayward, Laura","id":"fc885ee5-24bf-11eb-ad7b-bcc5104c0c1b","first_name":"Laura","last_name":"Hayward"},{"full_name":"Sella, Guy","last_name":"Sella","first_name":"Guy"}],"scopus_import":"1","day":"01","quality_controlled":"1","status":"public","file":[{"success":1,"file_name":"2025_Genetics_Berg.pdf","date_created":"2025-12-29T11:27:51Z","content_type":"application/pdf","creator":"dernst","access_level":"open_access","date_updated":"2025-12-29T11:27:51Z","relation":"main_file","file_id":"20863","checksum":"b02eb6b78028b8bef435edc8435a8468","file_size":1182339}],"oa":1,"type":"journal_article","abstract":[{"lang":"eng","text":"Genetic variation that influences complex disease susceptibility is introduced into the population by mutation and removed by natural selection and genetic drift. This mutation–selection–drift balance (MSDB) shapes the prevalence of a disease and its genetic architecture. To date, however, MSDB has been modeled only for monogenic (Mendelian) diseases. Here, we develop an MSDB model for complex disease susceptibility: we assume that genotype relates to disease risk according to the canonical liability threshold model and that the selection on variants affecting risk stems from the fitness cost of the disease. We focus on diseases that are highly polygenic, entail a substantial fitness cost, and are neither extremely common in the population nor exceedingly rare. The comparison of model predictions with genome-wide association studies and other observations in humans indicates that common genetic variation affecting complex disease susceptibility is little affected by directional selection and instead shaped by pleiotropic stabilizing selection on other traits. In turn, directional selection may exert a more substantial effect on rare, large-effect variants. Our results also suggest that current estimates of disease heritability are likely biased. The model thus provides a better understanding of the evolutionary processes that shape the architecture and prevalence of complex diseases."}],"date_created":"2025-12-21T23:01:34Z","article_processing_charge":"Yes (in subscription journal)","date_updated":"2025-12-29T11:29:16Z","_id":"20848","issue":"4","has_accepted_license":"1","OA_type":"hybrid","OA_place":"publisher","language":[{"iso":"eng"}],"external_id":{"pmid":["41073879"]},"department":[{"_id":"NiBa"}],"pmid":1,"citation":{"ieee":"J. J. Berg, X. Li, K. Riall, L. Hayward, and G. Sella, “Mutation–selection–drift balance models of complex diseases,” <i>Genetics</i>, vol. 231, no. 4. Oxford University Press, 2025.","chicago":"Berg, Jeremy J., Xinyi Li, Kellen Riall, Laura Hayward, and Guy Sella. “Mutation–Selection–Drift Balance Models of Complex Diseases.” <i>Genetics</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/genetics/iyaf220\">https://doi.org/10.1093/genetics/iyaf220</a>.","apa":"Berg, J. J., Li, X., Riall, K., Hayward, L., &#38; Sella, G. (2025). Mutation–selection–drift balance models of complex diseases. <i>Genetics</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/genetics/iyaf220\">https://doi.org/10.1093/genetics/iyaf220</a>","short":"J.J. Berg, X. Li, K. Riall, L. Hayward, G. Sella, Genetics 231 (2025).","ista":"Berg JJ, Li X, Riall K, Hayward L, Sella G. 2025. Mutation–selection–drift balance models of complex diseases. Genetics. 231(4), iyaf220.","mla":"Berg, Jeremy J., et al. “Mutation–Selection–Drift Balance Models of Complex Diseases.” <i>Genetics</i>, vol. 231, no. 4, iyaf220, Oxford University Press, 2025, doi:<a href=\"https://doi.org/10.1093/genetics/iyaf220\">10.1093/genetics/iyaf220</a>.","ama":"Berg JJ, Li X, Riall K, Hayward L, Sella G. Mutation–selection–drift balance models of complex diseases. <i>Genetics</i>. 2025;231(4). doi:<a href=\"https://doi.org/10.1093/genetics/iyaf220\">10.1093/genetics/iyaf220</a>"},"publication_identifier":{"eissn":["1943-2631"],"issn":["0016-6731"]},"oa_version":"Published Version","volume":231,"date_published":"2025-12-01T00:00:00Z","publisher":"Oxford University Press","publication_status":"published","acknowledgement":"We thank Nick Barton, Magnus Nordborg, John Novembre, Molly Przeworski, and Himani Sachdeva for many helpful discussions and for comments on the manuscript, and we thank Joshua Schraiber and 2 anonymous reviewers for comments on the manuscript. We also thank members of the Sella, Przeworski and Andolfatto labs at Columbia University, and the Berg, Novembre and Steinrücken labs at the University of Chicago, for feedback on the work at various stages. This work was completed in part with resources provided by the University of Chicago's Research Computing Center. This work was supported by National Institutes of Health F32 grant GM126787 and R35 grant GM151257 to J.J.B. and National Institutes of Health R01 grant GM115889 to G.S.","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png"},"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","publication":"Genetics","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2025-12-29T11:27:51Z","intvolume":"       231"},{"intvolume":"        37","file_date_updated":"2025-12-29T10:05:22Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Journal de theorie des nombres de Bordeaux","license":"https://creativecommons.org/licenses/by-nd/4.0/","tmp":{"short":"CC BY-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nd/4.0/legalcode","image":"/image/cc_by_nd.png","name":"Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)"},"acknowledgement":"The author would like to thank his supervisor Tim Browning for suggesting this project and many helpful conversations and useful comments. Moreover, he is grateful to Jakob Glas, Damaris Schindler, Igor Shparlinski, Matteo Verzobio, Victor Wang, Florian Wilsch and Shuntaro Yamagishi for taking their time to answer his questions and their valuable suggestions.","publication_status":"published","publisher":"Université de Bordeaux","date_published":"2025-11-27T00:00:00Z","volume":37,"oa_version":"Published Version","publication_identifier":{"eissn":["2118-8572"],"issn":["1246-7405"]},"citation":{"ieee":"Y. Diao, “Class numbers and integer points on some Pellian surfaces,” <i>Journal de theorie des nombres de Bordeaux</i>, vol. 37, no. 3. Université de Bordeaux, pp. 973–988, 2025.","chicago":"Diao, Yijie. “Class Numbers and Integer Points on Some Pellian Surfaces.” <i>Journal de Theorie Des Nombres de Bordeaux</i>. Université de Bordeaux, 2025. <a href=\"https://doi.org/10.5802/jtnb.1348\">https://doi.org/10.5802/jtnb.1348</a>.","apa":"Diao, Y. (2025). Class numbers and integer points on some Pellian surfaces. <i>Journal de Theorie Des Nombres de Bordeaux</i>. Université de Bordeaux. <a href=\"https://doi.org/10.5802/jtnb.1348\">https://doi.org/10.5802/jtnb.1348</a>","short":"Y. Diao, Journal de Theorie Des Nombres de Bordeaux 37 (2025) 973–988.","ista":"Diao Y. 2025. Class numbers and integer points on some Pellian surfaces. Journal de theorie des nombres de Bordeaux. 37(3), 973–988.","ama":"Diao Y. Class numbers and integer points on some Pellian surfaces. <i>Journal de theorie des nombres de Bordeaux</i>. 2025;37(3):973-988. doi:<a href=\"https://doi.org/10.5802/jtnb.1348\">10.5802/jtnb.1348</a>","mla":"Diao, Yijie. “Class Numbers and Integer Points on Some Pellian Surfaces.” <i>Journal de Theorie Des Nombres de Bordeaux</i>, vol. 37, no. 3, Université de Bordeaux, 2025, pp. 973–88, doi:<a href=\"https://doi.org/10.5802/jtnb.1348\">10.5802/jtnb.1348</a>."},"department":[{"_id":"TiBr"}],"external_id":{"arxiv":["2408.03774"]},"OA_type":"hybrid","language":[{"iso":"eng"}],"OA_place":"publisher","has_accepted_license":"1","issue":"3","_id":"20850","date_updated":"2025-12-29T10:08:46Z","article_processing_charge":"Yes (in subscription journal)","date_created":"2025-12-21T23:01:35Z","abstract":[{"text":"We provide an estimate for the number of nontrivial integer points on the Pellian surface t^2 - du^2 = 1 in a bounded region. We give a lower bound on the size of fundamental solutions for almost all d in a certain class, based on a recent conjecture of Browning and Wilsch about integer points on log K3 surfaces. We also obtain an upper bound on the average of class number in this class, assuming the same conjecture.","lang":"eng"},{"lang":"fre","text":"Nous donnons une estimation du nombre de points entiers non triviaux sur la surface pellienne \r\nt^2 - du^2 = 1 dans une région bornée. Nous établissons une borne inférieure pour la taille des solutions fondamentales pour presque tout d appartenant à une certaine classe, en nous fondant sur une conjecture récente de Browning et Wilsch concernant les points entiers sur les surfaces log K3. Nous obtenons également une borne supérieure pour la moyenne du nombre de classes dans cette classe, sous la même hypothèse conjecturale."}],"type":"journal_article","file":[{"success":1,"file_name":"2025_JTNB_Diao.pdf","date_created":"2025-12-29T10:05:22Z","content_type":"application/pdf","file_id":"20861","checksum":"67aa0afbc0b5bcbff5341f4d25e6ba20","file_size":766196,"creator":"dernst","access_level":"open_access","date_updated":"2025-12-29T10:05:22Z","relation":"main_file"}],"oa":1,"corr_author":"1","status":"public","arxiv":1,"quality_controlled":"1","day":"27","page":"973-988","scopus_import":"1","author":[{"id":"7b7eb4ca-eb2c-11ec-b98b-accec0b20c3b","full_name":"Diao, Yijie","first_name":"Yijie","last_name":"Diao","orcid":"0000-0002-4989-5330"}],"doi":"10.5802/jtnb.1348","year":"2025","article_type":"original","ddc":["510"],"title":"Class numbers and integer points on some Pellian surfaces","month":"11"},{"project":[{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}],"author":[{"full_name":"Chang, Xingqi","last_name":"Chang","first_name":"Xingqi"},{"first_name":"Carlos","last_name":"Escudero","full_name":"Escudero, Carlos"},{"full_name":"Black, Ashley P.","last_name":"Black","first_name":"Ashley P."},{"last_name":"Horta","first_name":"Sharona","full_name":"Horta, Sharona","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc"},{"last_name":"Martínez","first_name":"Elías","full_name":"Martínez, Elías"},{"full_name":"Lu, Xuan","last_name":"Lu","first_name":"Xuan"},{"full_name":"Llorca, Jordi","first_name":"Jordi","last_name":"Llorca"},{"last_name":"Ibáñez","first_name":"Maria","orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Biendicho, Jordi Jacas","first_name":"Jordi Jacas","last_name":"Biendicho"},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"}],"year":"2025","doi":"10.1002/advs.202515962","DOAJ_listed":"1","day":"12","scopus_import":"1","article_number":"e15962","article_type":"original","ddc":["540"],"PlanS_conform":"1","month":"12","title":"Mitigating the rock-salt phase transformation in disordered LNMO through synergetic solid-state AlF3/LiF modifications","abstract":[{"text":"High-voltage disordered spinel LiNi0.5Mn1.5O4 is a promising cathode material for high power density in lithium-ion batteries. However, it suffers from poor cycle life associated with the rock-salt phase transformation. This study presents a straightforward synthesis approach to enhance the electrochemical performance of LiNi0.5Mn1.5O4 through a synergistic solid-state modification with LiF and AlF3. This dual modification promotes rapid Li⁺ diffusion, enables near-complete delithiation/lithiation, approaching the theoretical capacity of disordered LiNi0.5Mn1.5O4, and, more importantly, effectively mitigates the formation of the rock-salt phase, thereby enhancing structural stability, as confirmed by operando X-ray absorption spectroscopy (XAS) and synchrotron X-ray diffraction (SXRD). As a result, the optimized LiNi0.5Mn1.5O4 (10 mg AlF3 + 30 mg LiF) delivers high reversible capacities of 142.1, 139.1, 129.2, 121.6, 110.3, 93.5, and 76.1 mAh∙g−1 at 0.2C, 0.5C, 1.0C, 2.0C, 3.0C, 4.0C, and 5.0C, respectively. Full cells using graphite as the anode and a high-loading cathode exhibit excellent cycling performance. They retain 80% of their capacity after 200 cycles at 0.5C within a voltage window of 3.5–4.9 V with cathode loading of 11 mg∙cm−2. The findings of this study will significantly advance high-power LiNi0.5Mn1.5O4 materials, offering improved battery life and thereby enhancing their potential for practical applications.","lang":"eng"}],"date_created":"2025-12-21T23:01:35Z","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"NanoFab"}],"type":"journal_article","quality_controlled":"1","status":"public","publication_identifier":{"eissn":["2198-3844"]},"citation":{"apa":"Chang, X., Escudero, C., Black, A. P., Horta, S., Martínez, E., Lu, X., … Cabot, A. (2025). Mitigating the rock-salt phase transformation in disordered LNMO through synergetic solid-state AlF3/LiF modifications. <i>Advanced Science</i>. Wiley. <a href=\"https://doi.org/10.1002/advs.202515962\">https://doi.org/10.1002/advs.202515962</a>","short":"X. Chang, C. Escudero, A.P. Black, S. Horta, E. Martínez, X. Lu, J. Llorca, M. Ibáñez, J.J. Biendicho, A. Cabot, Advanced Science (2025).","ista":"Chang X, Escudero C, Black AP, Horta S, Martínez E, Lu X, Llorca J, Ibáñez M, Biendicho JJ, Cabot A. 2025. Mitigating the rock-salt phase transformation in disordered LNMO through synergetic solid-state AlF3/LiF modifications. Advanced Science., e15962.","mla":"Chang, Xingqi, et al. “Mitigating the Rock-Salt Phase Transformation in Disordered LNMO through Synergetic Solid-State AlF3/LiF Modifications.” <i>Advanced Science</i>, e15962, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/advs.202515962\">10.1002/advs.202515962</a>.","ama":"Chang X, Escudero C, Black AP, et al. Mitigating the rock-salt phase transformation in disordered LNMO through synergetic solid-state AlF3/LiF modifications. <i>Advanced Science</i>. 2025. doi:<a href=\"https://doi.org/10.1002/advs.202515962\">10.1002/advs.202515962</a>","ieee":"X. Chang <i>et al.</i>, “Mitigating the rock-salt phase transformation in disordered LNMO through synergetic solid-state AlF3/LiF modifications,” <i>Advanced Science</i>. Wiley, 2025.","chicago":"Chang, Xingqi, Carlos Escudero, Ashley P. Black, Sharona Horta, Elías Martínez, Xuan Lu, Jordi Llorca, Maria Ibáñez, Jordi Jacas Biendicho, and Andreu Cabot. “Mitigating the Rock-Salt Phase Transformation in Disordered LNMO through Synergetic Solid-State AlF3/LiF Modifications.” <i>Advanced Science</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/advs.202515962\">https://doi.org/10.1002/advs.202515962</a>."},"department":[{"_id":"MaIb"}],"language":[{"iso":"eng"}],"OA_place":"publisher","OA_type":"gold","has_accepted_license":"1","date_updated":"2025-12-29T10:15:43Z","article_processing_charge":"Yes","_id":"20851","publication":"Advanced Science","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This work was supported by the European Commission-financed project IntelLigent (HORIZON-CL5-2021-D2-01-02) with project ID number 101069765. In collaboration with ALBA staff, the operando SXRD and XAS experiments were performed at BL-16-NOTOS beamline at ALBA Synchrotron Light Source (experiment number: 2023097765). This research was supported by the Scientific Service Units (SSU) of the Institute of Science and Technology Austria (ISTA) through resources provided by the Electron Microscopy Facility (EMF) and the Nanofabrication Facility (NFF), and M.I. and S.H. acknowledge financial support from ISTA and the Werner Siemens Foundation. Jordi Jacas Biendicho acknowledges the fellowship RYC2021-034994-I, funded by MICIU/AEI/10.13039/501100011033 and the European Union «NextGenerationEU»/PRTR». Jordi Llorca is a Serra Húnter Fellow and is grateful to projects MICIN/AEI/FEDER PID2021-124572OB-C31 and Maria de Maeztu Units of Excellence Programme CEX2023-001300-M, and GC 2021 SGR 01061.","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"publication_status":"epub_ahead","publisher":"Wiley","oa_version":"Published Version","date_published":"2025-12-12T00:00:00Z"},{"oa_version":"Published Version","ec_funded":1,"volume":122,"date_published":"2025-12-15T00:00:00Z","publisher":"National Academy of Sciences","publication_status":"published","acknowledgement":"J.S. and K.C. were supported by the European Research Council CoG 863818 (ForM-SMArt) and Austrian Science Fund (FWF) 10.55776/COE12.","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png"},"publication":"Proceedings of the National Academy of Sciences","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2025-12-29T09:36:50Z","intvolume":"       122","article_processing_charge":"Yes (in subscription journal)","date_updated":"2026-02-16T12:34:04Z","_id":"20857","issue":"51","has_accepted_license":"1","OA_place":"publisher","OA_type":"hybrid","language":[{"iso":"eng"}],"external_id":{"pmid":["41397136"]},"department":[{"_id":"KrCh"}],"pmid":1,"citation":{"ista":"Svoboda J, Chatterjee K. 2025. Promoters of cooperation in evolutionary games. Proceedings of the National Academy of Sciences. 122(51), e2524109122.","short":"J. Svoboda, K. Chatterjee, Proceedings of the National Academy of Sciences 122 (2025) e2524109122.","mla":"Svoboda, Jakub, and Krishnendu Chatterjee. “Promoters of Cooperation in Evolutionary Games.” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 51, National Academy of Sciences, 2025, p. e2524109122, doi:<a href=\"https://doi.org/10.1073/pnas.2524109122\">10.1073/pnas.2524109122</a>.","ama":"Svoboda J, Chatterjee K. Promoters of cooperation in evolutionary games. <i>Proceedings of the National Academy of Sciences</i>. 2025;122(51):e2524109122. doi:<a href=\"https://doi.org/10.1073/pnas.2524109122\">10.1073/pnas.2524109122</a>","apa":"Svoboda, J., &#38; Chatterjee, K. (2025). Promoters of cooperation in evolutionary games. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.2524109122\">https://doi.org/10.1073/pnas.2524109122</a>","ieee":"J. Svoboda and K. Chatterjee, “Promoters of cooperation in evolutionary games,” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 51. National Academy of Sciences, p. e2524109122, 2025.","chicago":"Svoboda, Jakub, and Krishnendu Chatterjee. “Promoters of Cooperation in Evolutionary Games.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2025. <a href=\"https://doi.org/10.1073/pnas.2524109122\">https://doi.org/10.1073/pnas.2524109122</a>."},"publication_identifier":{"eissn":["1091-6490"]},"quality_controlled":"1","status":"public","corr_author":"1","file":[{"success":1,"file_name":"2025_PNAS_Svoboda.pdf","date_created":"2025-12-29T09:36:50Z","content_type":"application/pdf","creator":"dernst","access_level":"open_access","date_updated":"2025-12-29T09:36:50Z","relation":"main_file","file_id":"20860","checksum":"dd50b62a1efc28c0133fe9c11dbee53c","file_size":2308124}],"oa":1,"type":"journal_article","abstract":[{"text":"Evolutionary games provide a flexible mathematical framework for many problems in biology and social evolution. Prisoners’ dilemma, and in particular, the important special case of donation games, represents social dilemmas where cooperation is mutually beneficial, yet defection is preferred by selfish agents. In evolutionary games on networks, the agents interact over a population structure. The existence of population structures that promote cooperative behavior is a fascinating and active research topic. Previous research establishes structures promoting cooperation in the limit of weak selection where the benefit-to-cost ratio β exceeds 1.5. The existence of such structures for medium and strong selection for 1 < ß < 2 and for weak selection for 1 < ß < 1.5 has been a long-standing open question. First, we answer the open questions in the affirmative: For every selection strength and every ß > 1, we construct networks promoting cooperation. Second, we present a robustness result with respect to β and selection strength: Our structures promote cooperation for a range of these parameter values rather than specific parameter values. Finally, we supplement our theoretical results with simulation results on small population structures that show the effectiveness of our construction over well-studied population structures.","lang":"eng"}],"date_created":"2025-12-28T23:01:26Z","month":"12","title":"Promoters of cooperation in evolutionary games","ddc":["000"],"article_type":"original","year":"2025","doi":"10.1073/pnas.2524109122","author":[{"first_name":"Jakub","last_name":"Svoboda","orcid":"0000-0002-1419-3267","id":"130759D2-D7DD-11E9-87D2-DE0DE6697425","full_name":"Svoboda, Jakub"},{"orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"}],"project":[{"name":"Formal Methods for Stochastic Models: Algorithms and Applications","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818","call_identifier":"H2020"}],"scopus_import":"1","page":"e2524109122","day":"15"},{"acknowledgement":"This project was generously supported by Seedfinancing (grant no. P2282679) of the Austrian Bundesministerium für Digitalisierung und Wirtschaftsstandort and the Bundesministerium für Klimaschutz, Umwelt, Energie, Mobilität, Innovation, und Technologie, handled by the Austrian Wirtschaftsservice (aws), as well as by Life Science Call 2022 (grant no. FO999896442) of the Austrian Research Promotion Agency (FFG). We thank Mag. Michael Schunn from the PCF of the Institute of Science and Technology Austria for his continuous technical support.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Molecular Therapy","date_published":"2025-10-04T00:00:00Z","oa_version":"Preprint","publication_status":"inpress","publisher":"Elsevier","OA_type":"green","OA_place":"repository","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1525-0024"],"issn":["1525-0016"]},"citation":{"ieee":"R. Rica <i>et al.</i>, “Langerhans cell-targeted protein delivery enhances antigen-specific cellular immune response,” <i>Molecular Therapy</i>. Elsevier.","chicago":"Rica, Ramona, Klara Klein, Litty Johnson, Gabriele Carta, Mirza Sarcevic, Freyja Langer, Christoph Rademacher, Robert Wawrzinek, Federica Quattrone, and Florian Sparber. “Langerhans Cell-Targeted Protein Delivery Enhances Antigen-Specific Cellular Immune Response.” <i>Molecular Therapy</i>. Elsevier, n.d. <a href=\"https://doi.org/10.1016/j.ymthe.2025.10.008\">https://doi.org/10.1016/j.ymthe.2025.10.008</a>.","apa":"Rica, R., Klein, K., Johnson, L., Carta, G., Sarcevic, M., Langer, F., … Sparber, F. (n.d.). Langerhans cell-targeted protein delivery enhances antigen-specific cellular immune response. <i>Molecular Therapy</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ymthe.2025.10.008\">https://doi.org/10.1016/j.ymthe.2025.10.008</a>","short":"R. Rica, K. Klein, L. Johnson, G. Carta, M. Sarcevic, F. Langer, C. Rademacher, R. Wawrzinek, F. Quattrone, F. Sparber, Molecular Therapy (n.d.).","ista":"Rica R, Klein K, Johnson L, Carta G, Sarcevic M, Langer F, Rademacher C, Wawrzinek R, Quattrone F, Sparber F. Langerhans cell-targeted protein delivery enhances antigen-specific cellular immune response. Molecular Therapy.","ama":"Rica R, Klein K, Johnson L, et al. Langerhans cell-targeted protein delivery enhances antigen-specific cellular immune response. <i>Molecular Therapy</i>. doi:<a href=\"https://doi.org/10.1016/j.ymthe.2025.10.008\">10.1016/j.ymthe.2025.10.008</a>","mla":"Rica, Ramona, et al. “Langerhans Cell-Targeted Protein Delivery Enhances Antigen-Specific Cellular Immune Response.” <i>Molecular Therapy</i>, Elsevier, doi:<a href=\"https://doi.org/10.1016/j.ymthe.2025.10.008\">10.1016/j.ymthe.2025.10.008</a>."},"department":[{"_id":"PreCl"}],"_id":"20858","date_updated":"2025-12-29T09:55:05Z","article_processing_charge":"No","type":"journal_article","oa":1,"date_created":"2025-12-28T23:01:26Z","abstract":[{"text":"Targeted antigen delivery to immune cells, particularly dendritic cells, has emerged as a promising strategy to enhance therapeutic efficacy of vaccines, while minimizing adverse effects associated with conventional immunization. In this study, we use our previously described small glycomimetic molecule that is selectively recognized by the Langerhans cell (LC)-specific surface receptor Langerin and demonstrate specific delivery of protein antigens to these specialized dendritic cells. Our results show that Langerin-mediated antigen delivery significantly enhances the immune response in vivo, resulting in increased expansion and activation of antigen-specific T cells, compared to immunization with unmodified antigen. We demonstrate the feasibility of our LC-targeted platform for immune cell-specific immunization with protein antigen and underscore the potential of LCs as an access point for next-generation vaccines and immunotherapies.","lang":"eng"}],"main_file_link":[{"url":"https://doi.org/10.1101/2025.05.05.652195","open_access":"1"}],"status":"public","quality_controlled":"1","article_type":"original","day":"04","scopus_import":"1","author":[{"first_name":"Ramona","last_name":"Rica","full_name":"Rica, Ramona"},{"last_name":"Klein","first_name":"Klara","full_name":"Klein, Klara"},{"last_name":"Johnson","first_name":"Litty","full_name":"Johnson, Litty"},{"full_name":"Carta, Gabriele","first_name":"Gabriele","last_name":"Carta"},{"last_name":"Sarcevic","first_name":"Mirza","full_name":"Sarcevic, Mirza"},{"last_name":"Langer","first_name":"Freyja","id":"3C1BE782-F248-11E8-B48F-1D18A9856A87","full_name":"Langer, Freyja"},{"full_name":"Rademacher, Christoph","first_name":"Christoph","last_name":"Rademacher"},{"full_name":"Wawrzinek, Robert","first_name":"Robert","last_name":"Wawrzinek"},{"last_name":"Quattrone","first_name":"Federica","full_name":"Quattrone, Federica"},{"full_name":"Sparber, Florian","last_name":"Sparber","first_name":"Florian"}],"year":"2025","doi":"10.1016/j.ymthe.2025.10.008","title":"Langerhans cell-targeted protein delivery enhances antigen-specific cellular immune response","month":"10"},{"acknowledged_ssus":[{"_id":"NanoFab"}],"oa":1,"type":"journal_article","abstract":[{"lang":"eng","text":"Effective immune responses rely on the efficient migration of leukocytes. Yet, how temperature regulates migration dynamics at the single-cell level has remained poorly understood. Using zebrafish embryos and mouse tissue explants, we found that temperature positively regulates leukocyte migration speed, exploration, and arrival frequencies to wounds and lymph vessels. Complementary 2D and 3D cultures revealed that this thermokinetic control of cell migration is conserved across immune cell types, independently of the 3D tissue environment. By applying precise (sub-)cellular temperature modulation, we identified a rapid and reversible thermo-response that depends on myosin II activity. Small physiological increases in temperature (1°C –2°C), as present during fever-like conditions, profoundly increased immune responses by accelerating arrival times at lymphatic vessels and tissue wounds. These findings identify myosin-II-dependent actomyosin contractility as a critical mechanical structure regulating single-cell thermo-adaptability, with physiological implications for tuning the speed of immune responses in vivo."}],"main_file_link":[{"url":"https://doi.org/10.1016/j.devcel.2025.10.006","open_access":"1"}],"date_created":"2025-12-28T23:01:27Z","quality_controlled":"1","status":"public","article_type":"original","author":[{"full_name":"Company-Garrido, Iván","first_name":"Iván","last_name":"Company-Garrido"},{"full_name":"Zurita Carpio, Alberto","last_name":"Zurita Carpio","first_name":"Alberto"},{"first_name":"Mariona","last_name":"Colomer-Rosell","full_name":"Colomer-Rosell, Mariona"},{"last_name":"Ciraulo","first_name":"Bernard","full_name":"Ciraulo, Bernard"},{"first_name":"Ronja","last_name":"Molkenbur","full_name":"Molkenbur, Ronja"},{"first_name":"Peter","last_name":"Lanzerstorfer","full_name":"Lanzerstorfer, Peter"},{"last_name":"Pezzano","first_name":"Fabio","full_name":"Pezzano, Fabio"},{"full_name":"Agazzi, Costanza","last_name":"Agazzi","first_name":"Costanza"},{"last_name":"Hauschild","first_name":"Robert","orcid":"0000-0001-9843-3522","full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Saumey","last_name":"Jain","full_name":"Jain, Saumey"},{"last_name":"Jacques","first_name":"Jeroen M.","full_name":"Jacques, Jeroen M."},{"first_name":"Valeria","last_name":"Venturini","full_name":"Venturini, Valeria"},{"full_name":"Knapp, Christian","first_name":"Christian","last_name":"Knapp"},{"full_name":"Xie, Yufei","last_name":"Xie","first_name":"Yufei"},{"full_name":"Merrin, Jack","id":"4515C308-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5145-4609","last_name":"Merrin","first_name":"Jack"},{"first_name":"Julian","last_name":"Weghuber","full_name":"Weghuber, Julian"},{"last_name":"Schaaf","first_name":"Marcel","full_name":"Schaaf, Marcel"},{"last_name":"Quidant","first_name":"Romain","full_name":"Quidant, Romain"},{"orcid":"0000-0001-6165-5738","first_name":"Eva","last_name":"Kiermaier","full_name":"Kiermaier, Eva","id":"3EB04B78-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Ortega Arroyo","first_name":"Jaime","full_name":"Ortega Arroyo, Jaime"},{"first_name":"Verena","last_name":"Ruprecht","orcid":"0000-0003-4088-8633","id":"4D71A03A-F248-11E8-B48F-1D18A9856A87","full_name":"Ruprecht, Verena"},{"id":"355AA5A0-F248-11E8-B48F-1D18A9856A87","full_name":"Wieser, Stefan","last_name":"Wieser","first_name":"Stefan","orcid":"0000-0002-2670-2217"}],"year":"2025","doi":"10.1016/j.devcel.2025.10.006","day":"04","scopus_import":"1","month":"11","title":"Myosin II regulates cellular thermo-adaptability and the efficiency of immune responses","ddc":["570"],"PlanS_conform":"1","acknowledgement":"The authors would like to acknowledge the Super Resolution Light Microcopy and Nanoscopy (SLN) Facility of ICFO for their support with imaging experiments, Johann Osmond (Nanofabrication laboratory, ICFO) for the design and production of molds for generating confinement coverslip, Merche Rivas for cell culture of immune cells and further support from the CRG Core Facilities for Genomics and Advanced Light Microscopy. We would like to thank Michael Sixt for discussions on this work and the Quidant, Ruprecht, and Wieser lab members for critical reading of the manuscript. This research was supported by the Scientific Service Units (SSU) of IST-Austria through resources provided by the Nanofabrication Facility (NFF). C.A. acknowledges the funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no 847517 and V.V. from the ICFOstepstone – PhD Programme funded by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no 665884. S.W. acknowledges support through the Spanish Ministry of Economy and Competitiveness via MINECO’s Plan Nacional (BFU2017-86296-P). V.R. acknowledges funding from the European Union’s HORIZON-EIC-2021-PATHFINDEROPEN program under grant agreement no. 101046620 and European Union's Horizon Europe program under the grant agreement no. 101072123. E.K. acknowledges funding by a fellowship of the Ministry of Innovation, Science and Research of North-Rhine-Westphalia (AZ: 421-8.03.03.02-137069) and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy – EXC 2151 – 390873048 and by the TRA Life and Health (University of Bonn) as part of the Excellence Strategy of the federal and state governments.","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"publication":"Developmental Cell","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","date_published":"2025-11-04T00:00:00Z","publication_status":"epub_ahead","publisher":"Elsevier","OA_type":"hybrid","language":[{"iso":"eng"}],"OA_place":"publisher","has_accepted_license":"1","external_id":{"pmid":["41192429"]},"publication_identifier":{"issn":["1534-5807"],"eissn":["1878-1551"]},"citation":{"chicago":"Company-Garrido, Iván, Alberto Zurita Carpio, Mariona Colomer-Rosell, Bernard Ciraulo, Ronja Molkenbur, Peter Lanzerstorfer, Fabio Pezzano, et al. “Myosin II Regulates Cellular Thermo-Adaptability and the Efficiency of Immune Responses.” <i>Developmental Cell</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.devcel.2025.10.006\">https://doi.org/10.1016/j.devcel.2025.10.006</a>.","ieee":"I. Company-Garrido <i>et al.</i>, “Myosin II regulates cellular thermo-adaptability and the efficiency of immune responses,” <i>Developmental Cell</i>. Elsevier, 2025.","ama":"Company-Garrido I, Zurita Carpio A, Colomer-Rosell M, et al. Myosin II regulates cellular thermo-adaptability and the efficiency of immune responses. <i>Developmental Cell</i>. 2025. doi:<a href=\"https://doi.org/10.1016/j.devcel.2025.10.006\">10.1016/j.devcel.2025.10.006</a>","mla":"Company-Garrido, Iván, et al. “Myosin II Regulates Cellular Thermo-Adaptability and the Efficiency of Immune Responses.” <i>Developmental Cell</i>, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.devcel.2025.10.006\">10.1016/j.devcel.2025.10.006</a>.","ista":"Company-Garrido I, Zurita Carpio A, Colomer-Rosell M, Ciraulo B, Molkenbur R, Lanzerstorfer P, Pezzano F, Agazzi C, Hauschild R, Jain S, Jacques JM, Venturini V, Knapp C, Xie Y, Merrin J, Weghuber J, Schaaf M, Quidant R, Kiermaier E, Ortega Arroyo J, Ruprecht V, Wieser S. 2025. Myosin II regulates cellular thermo-adaptability and the efficiency of immune responses. Developmental Cell.","short":"I. Company-Garrido, A. Zurita Carpio, M. Colomer-Rosell, B. Ciraulo, R. Molkenbur, P. Lanzerstorfer, F. Pezzano, C. Agazzi, R. Hauschild, S. Jain, J.M. Jacques, V. Venturini, C. Knapp, Y. Xie, J. Merrin, J. Weghuber, M. Schaaf, R. Quidant, E. Kiermaier, J. Ortega Arroyo, V. Ruprecht, S. Wieser, Developmental Cell (2025).","apa":"Company-Garrido, I., Zurita Carpio, A., Colomer-Rosell, M., Ciraulo, B., Molkenbur, R., Lanzerstorfer, P., … Wieser, S. (2025). Myosin II regulates cellular thermo-adaptability and the efficiency of immune responses. <i>Developmental Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2025.10.006\">https://doi.org/10.1016/j.devcel.2025.10.006</a>"},"pmid":1,"department":[{"_id":"Bio"},{"_id":"NanoFab"}],"date_updated":"2025-12-29T09:23:58Z","article_processing_charge":"Yes (in subscription journal)","_id":"20859"},{"external_id":{"arxiv":["2305.02836"]},"publication_identifier":{"eissn":["1432-0525"],"issn":["0001-5903"]},"citation":{"apa":"Bartocci, E., Chalupa, M., Henzinger, T. A., Nickovic, D., &#38; Oliveira da Costa, A. (2025). Hypernode automata. <i>Acta Informatica</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00236-025-00509-8\">https://doi.org/10.1007/s00236-025-00509-8</a>","ista":"Bartocci E, Chalupa M, Henzinger TA, Nickovic D, Oliveira da Costa A. 2025. Hypernode automata. Acta Informatica. 62(4), 43.","short":"E. Bartocci, M. Chalupa, T.A. Henzinger, D. Nickovic, A. Oliveira da Costa, Acta Informatica 62 (2025).","ama":"Bartocci E, Chalupa M, Henzinger TA, Nickovic D, Oliveira da Costa A. Hypernode automata. <i>Acta Informatica</i>. 2025;62(4). doi:<a href=\"https://doi.org/10.1007/s00236-025-00509-8\">10.1007/s00236-025-00509-8</a>","mla":"Bartocci, Ezio, et al. “Hypernode Automata.” <i>Acta Informatica</i>, vol. 62, no. 4, 43, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1007/s00236-025-00509-8\">10.1007/s00236-025-00509-8</a>.","ieee":"E. Bartocci, M. Chalupa, T. A. Henzinger, D. Nickovic, and A. Oliveira da Costa, “Hypernode automata,” <i>Acta Informatica</i>, vol. 62, no. 4. Springer Nature, 2025.","chicago":"Bartocci, Ezio, Marek Chalupa, Thomas A Henzinger, Dejan Nickovic, and Ana Oliveira da Costa. “Hypernode Automata.” <i>Acta Informatica</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s00236-025-00509-8\">https://doi.org/10.1007/s00236-025-00509-8</a>."},"department":[{"_id":"ToHe"}],"OA_place":"publisher","language":[{"iso":"eng"}],"OA_type":"hybrid","has_accepted_license":"1","issue":"4","date_updated":"2026-01-05T12:27:41Z","article_processing_charge":"Yes (via OA deal)","_id":"20866","publication":"Acta Informatica","file_date_updated":"2026-01-05T12:26:43Z","intvolume":"        62","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This work was supported in part by the Austrian Science Fund (FWF) SFB project SpyCoDe 10.55776/F85, by the FWF projects ZK-35 and W1255-N23, and by the ERC Advanced Grant VAMOS 101020093. Open access funding provided by Institute of Science and Technology (IST Austria).","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"publication_status":"published","publisher":"Springer Nature","ec_funded":1,"oa_version":"Published Version","date_published":"2025-12-09T00:00:00Z","volume":62,"author":[{"full_name":"Bartocci, Ezio","last_name":"Bartocci","first_name":"Ezio"},{"first_name":"Marek","last_name":"Chalupa","id":"87e34708-d6c6-11ec-9f5b-9391e7be2463","full_name":"Chalupa, Marek"},{"orcid":"0000-0002-2985-7724","last_name":"Henzinger","first_name":"Thomas A","full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Nickovic, Dejan","id":"41BCEE5C-F248-11E8-B48F-1D18A9856A87","first_name":"Dejan","last_name":"Nickovic"},{"full_name":"Oliveira da Costa, Ana","id":"f347ec37-6676-11ee-b395-a888cb7b4fb4","last_name":"Oliveira da Costa","first_name":"Ana","orcid":"0000-0002-8741-5799"}],"project":[{"grant_number":"101020093","call_identifier":"H2020","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","name":"Vigilant Algorithmic Monitoring of Software"},{"_id":"34a1b658-11ca-11ed-8bc3-c75229f0241e","grant_number":"F8502","name":"Interface Theory for Security and Privacy"}],"year":"2025","doi":"10.1007/s00236-025-00509-8","day":"09","scopus_import":"1","article_number":"43","article_type":"original","ddc":["000"],"related_material":{"record":[{"relation":"earlier_version","status":"public","id":"14405"}]},"month":"12","title":"Hypernode automata","abstract":[{"lang":"eng","text":"In this work, we present hypernode automata as a specification formalism for hyperproperties of systems whose executions may be misaligned among themselves, such as concurrent systems. These automata consist of nodes labeled with hypernode logic formulas and transitions marked with synchronizing actions. Hypernode logic formulas establish relations between sequences of variable values among different system executions. This logic enables both synchronous and asynchronous analysis of traces. In its asynchronous view on execution traces, hypernode formulas establish relations on the order of value changes for each variable without correlating their timing. In both views, the analysis of different execution traces is synchronized through the transitions of hypernode automata. By combining logic’s declarative nature with automata’s procedural power, hypernode automata seamlessly integrate asynchronicity requirements at the node level with synchronicity between node transitions. We show that the model-checking problem for hypernode automata is decidable for specifications where each node specifies either a synchronous or an asynchronous requirement for the system’s executions, but not both."}],"date_created":"2025-12-29T12:07:12Z","oa":1,"file":[{"success":1,"content_type":"application/pdf","date_created":"2026-01-05T12:26:43Z","file_name":"2025_ActaInformatica_Bartocci.pdf","date_updated":"2026-01-05T12:26:43Z","creator":"dernst","access_level":"open_access","relation":"main_file","file_id":"20944","file_size":7117003,"checksum":"06ed45a1218ad8464818803ae2968aaf"}],"type":"journal_article","corr_author":"1","arxiv":1,"quality_controlled":"1","status":"public"},{"publication_identifier":{"issn":["1472-2747"],"eissn":["1472-2739"]},"citation":{"ieee":"N. Zava, “Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff space into Hilbert spaces,” <i>Algebraic &#38; Geometric Topology</i>, vol. 25, no. 8. Mathematical Sciences Publishers, pp. 5153–5174, 2025.","chicago":"Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the Gromov–Hausdorff Space into Hilbert Spaces.” <i>Algebraic &#38; Geometric Topology</i>. Mathematical Sciences Publishers, 2025. <a href=\"https://doi.org/10.2140/agt.2025.25.5153\">https://doi.org/10.2140/agt.2025.25.5153</a>.","short":"N. Zava, Algebraic &#38; Geometric Topology 25 (2025) 5153–5174.","ista":"Zava N. 2025. Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff space into Hilbert spaces. Algebraic &#38; Geometric Topology. 25(8), 5153–5174.","ama":"Zava N. Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff space into Hilbert spaces. <i>Algebraic &#38; Geometric Topology</i>. 2025;25(8):5153-5174. doi:<a href=\"https://doi.org/10.2140/agt.2025.25.5153\">10.2140/agt.2025.25.5153</a>","mla":"Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the Gromov–Hausdorff Space into Hilbert Spaces.” <i>Algebraic &#38; Geometric Topology</i>, vol. 25, no. 8, Mathematical Sciences Publishers, 2025, pp. 5153–74, doi:<a href=\"https://doi.org/10.2140/agt.2025.25.5153\">10.2140/agt.2025.25.5153</a>.","apa":"Zava, N. (2025). Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff space into Hilbert spaces. <i>Algebraic &#38; Geometric Topology</i>. Mathematical Sciences Publishers. <a href=\"https://doi.org/10.2140/agt.2025.25.5153\">https://doi.org/10.2140/agt.2025.25.5153</a>"},"department":[{"_id":"HeEd"}],"external_id":{"arxiv":["2303.04730"]},"language":[{"iso":"eng"}],"OA_type":"diamond","OA_place":"publisher","has_accepted_license":"1","issue":"8","_id":"20867","date_updated":"2026-01-05T12:19:09Z","article_processing_charge":"No","file_date_updated":"2026-01-05T12:16:38Z","intvolume":"        25","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Algebraic & Geometric Topology","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"acknowledgement":"The author was supported by the FWF Grant, Project number I4245-N35. The author would like to thank Thomas Weighill for the helpful discussions around Theorem 3.10, and Takamitsu Yamauchi for bringing to my attention the fundamental reference [35]. Furthermore, the author\r\nis thankful for the detailed and helpful comments of the reviewer of this manuscript.","publication_status":"published","publisher":"Mathematical Sciences Publishers","date_published":"2025-11-20T00:00:00Z","volume":25,"oa_version":"Published Version","day":"20","scopus_import":"1","page":"5153-5174","project":[{"call_identifier":"FWF","grant_number":"I04245","_id":"26AD5D90-B435-11E9-9278-68D0E5697425","name":"Algebraic Footprints of Geometric Features in Homology"}],"author":[{"first_name":"Nicolò","last_name":"Zava","orcid":"0000-0001-8686-1888","id":"c8b3499c-7a77-11eb-b046-aa368cbbf2ad","full_name":"Zava, Nicolò"}],"year":"2025","doi":"10.2140/agt.2025.25.5153","article_type":"original","ddc":["500"],"PlanS_conform":"1","title":"Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff space into Hilbert spaces","month":"11","date_created":"2025-12-29T12:09:09Z","abstract":[{"lang":"eng","text":"We discuss the embeddability of subspaces of the Gromov–Hausdorff space, which consists of isometry classes of compact metric spaces endowed with the Gromov–Hausdorff distance, into Hilbert spaces. These embeddings are particularly valuable for applications to topological data analysis. We prove that its subspace consisting of metric spaces with at most n points has asymptotic dimension n(n−1)∕2. Thus, there exists a coarse embedding of that space into a Hilbert space. On the contrary, if the number of points is not bounded, then the subspace cannot be coarsely embedded into any uniformly convex Banach space and so, in particular, into any Hilbert space. Furthermore, we prove that, even if we restrict to finite metric spaces whose diameter is bounded by some constant, the subspace still cannot be bi-Lipschitz embedded into any finite-dimensional Hilbert space. We obtain both nonembeddability results by finding obstructions to coarse and bi-Lipschitz embeddings in families of isometry classes of finite subsets of the real line endowed with the Euclidean–Hausdorff distance."}],"type":"journal_article","file":[{"success":1,"file_name":"2025_AlgebraicGeomTopology_Zava.pdf","date_created":"2026-01-05T12:16:38Z","content_type":"application/pdf","creator":"dernst","access_level":"open_access","date_updated":"2026-01-05T12:16:38Z","relation":"main_file","file_id":"20943","checksum":"1e05b4f17a44500ae1ae1e21bc636f6a","file_size":574389}],"oa":1,"corr_author":"1","status":"public","quality_controlled":"1","arxiv":1},{"language":[{"iso":"eng"}],"OA_type":"closed access","citation":{"ista":"Liang C, Yuan J, Zhang R, Tang X, Schumann G, Hitchen E, Polemiti E, Serin E, Kebir H, Lett TA, Vaidya N, Roy J-C, Walter H, Heinz A, Ralser M, Twardziok S, Eils R, Jentsch M, Taron U-H, Schütz T, Schepanski K, Banaschewski T, Neidhart M, Meyer-Lindenberg A, Tost H, Holz N, Schwarz E, Stringaris A, Christmann N, Janson K, Nees F, Neidhart M, Seefried B, Aden R, Andreassen OA, Westlye LT, van der Meer D, Fernández-Cabello S, Kjelkenes R, Ask H, Rapp M, Tschorn M, Böttger SJ, Marquand A, Bernas A, Novarino G, Slater M, Gallego J, Pastor Á, Feixas G, Eiroa-Orosa FJ, Nöthen MM, Forstner AJ, Claus I, Mathey C, Heilmann-Heimbach S, Hoffmann P, Miller A, Sommer P, Schmitt K, Wilbertz J, Patraskaki M, Jirsa V, Petkoski S, Athanasiadis A-P, Spanlang B, Pearmund C, Hese S, Renner P, Jia T, Chang X, Dai Y, Xia Y, Li Y, Zhang Y, Calhoun V, Thompson P, Clinton N, Desrivières S, Agunbiade K, Yu X, Zhang Z, Chen D, Young AH, Schwalber A, Köhler V, Stahl B, Ogoh G, Schikowski T, Brandlistuen R. 2025. Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai. Nature Mental Health. 3(12), 1532–1544.","short":"C. Liang, J. Yuan, R. Zhang, X. Tang, G. Schumann, E. Hitchen, E. Polemiti, E. Serin, H. Kebir, T.A. Lett, N. Vaidya, J.-C. Roy, H. Walter, A. Heinz, M. Ralser, S. Twardziok, R. Eils, M. Jentsch, U.-H. Taron, T. Schütz, K. Schepanski, T. Banaschewski, M. Neidhart, A. Meyer-Lindenberg, H. Tost, N. Holz, E. Schwarz, A. Stringaris, N. Christmann, K. Janson, F. Nees, M. Neidhart, B. Seefried, R. Aden, O.A. Andreassen, L.T. Westlye, D. van der Meer, S. Fernández-Cabello, R. Kjelkenes, H. Ask, M. Rapp, M. Tschorn, S.J. Böttger, A. Marquand, A. Bernas, G. Novarino, M. Slater, J. Gallego, Á. Pastor, G. Feixas, F.J. Eiroa-Orosa, M.M. Nöthen, A.J. Forstner, I. Claus, C. Mathey, S. Heilmann-Heimbach, P. Hoffmann, A. Miller, P. Sommer, K. Schmitt, J. Wilbertz, M. Patraskaki, V. Jirsa, S. Petkoski, A.-P. Athanasiadis, B. Spanlang, C. Pearmund, S. Hese, P. Renner, T. Jia, X. Chang, Y. Dai, Y. Xia, Y. Li, Y. Zhang, V. Calhoun, P. Thompson, N. Clinton, S. Desrivières, K. Agunbiade, X. Yu, Z. Zhang, D. Chen, A.H. Young, A. Schwalber, V. Köhler, B. Stahl, G. Ogoh, T. Schikowski, R. Brandlistuen, Nature Mental Health 3 (2025) 1532–1544.","ama":"Liang C, Yuan J, Zhang R, et al. Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai. <i>Nature Mental Health</i>. 2025;3(12):1532-1544. doi:<a href=\"https://doi.org/10.1038/s44220-025-00519-y\">10.1038/s44220-025-00519-y</a>","mla":"Liang, Chen, et al. “Projecting the Morbidity Burden of Mental and Behavioral Disorders Associated with Increasing Humid Heat in Shanghai.” <i>Nature Mental Health</i>, vol. 3, no. 12, Springer Nature, 2025, pp. 1532–44, doi:<a href=\"https://doi.org/10.1038/s44220-025-00519-y\">10.1038/s44220-025-00519-y</a>.","apa":"Liang, C., Yuan, J., Zhang, R., Tang, X., Schumann, G., Hitchen, E., … Brandlistuen, R. (2025). Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai. <i>Nature Mental Health</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s44220-025-00519-y\">https://doi.org/10.1038/s44220-025-00519-y</a>","ieee":"C. Liang <i>et al.</i>, “Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai,” <i>Nature Mental Health</i>, vol. 3, no. 12. Springer Nature, pp. 1532–1544, 2025.","chicago":"Liang, Chen, Jiacan Yuan, Renhe Zhang, Xu Tang, Gunter Schumann, Esther Hitchen, Elli Polemiti, et al. “Projecting the Morbidity Burden of Mental and Behavioral Disorders Associated with Increasing Humid Heat in Shanghai.” <i>Nature Mental Health</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s44220-025-00519-y\">https://doi.org/10.1038/s44220-025-00519-y</a>."},"publication_identifier":{"issn":["2731-6076"]},"department":[{"_id":"GaNo"}],"date_updated":"2026-01-05T12:02:29Z","article_processing_charge":"No","_id":"20868","issue":"12","acknowledgement":"This research was supported by the National Natural Science Foundation of China (grants 42288101 and 42175066) and Shanghai International Science and Technology Partnership Project (grant 21230780200). G.S. is supported by the China Brain Project (grant 2025ZD0215100), the National Natural Science Foundation of China (grant 82150710554), the Chinese National Key Project (grant 2023YFE0199700), the National Natural Science Foundation of China (grant W2541022) and the EC Horizon Europe: environMENTAL project.","publication":"Nature Mental Health","intvolume":"         3","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"None","date_published":"2025-12-01T00:00:00Z","volume":3,"publication_status":"published","publisher":"Springer Nature","article_type":"original","author":[{"full_name":"Liang, Chen","last_name":"Liang","first_name":"Chen"},{"last_name":"Yuan","first_name":"Jiacan","full_name":"Yuan, Jiacan"},{"first_name":"Renhe","last_name":"Zhang","full_name":"Zhang, Renhe"},{"full_name":"Tang, Xu","last_name":"Tang","first_name":"Xu"},{"last_name":"Schumann","first_name":"Gunter","full_name":"Schumann, Gunter"},{"full_name":"Hitchen, Esther","last_name":"Hitchen","first_name":"Esther"},{"first_name":"Elli","last_name":"Polemiti","full_name":"Polemiti, Elli"},{"last_name":"Serin","first_name":"Emin","full_name":"Serin, Emin"},{"full_name":"Kebir, Hedi","first_name":"Hedi","last_name":"Kebir"},{"last_name":"Lett","first_name":"Tristram A.","full_name":"Lett, Tristram A."},{"first_name":"Nilakshi","last_name":"Vaidya","full_name":"Vaidya, Nilakshi"},{"full_name":"Roy, Jean-Charles","first_name":"Jean-Charles","last_name":"Roy"},{"full_name":"Walter, Henrik","first_name":"Henrik","last_name":"Walter"},{"full_name":"Heinz, Andreas","first_name":"Andreas","last_name":"Heinz"},{"last_name":"Ralser","first_name":"Markus","full_name":"Ralser, Markus"},{"first_name":"Sven","last_name":"Twardziok","full_name":"Twardziok, Sven"},{"full_name":"Eils, Roland","last_name":"Eils","first_name":"Roland"},{"full_name":"Jentsch, Marcel","first_name":"Marcel","last_name":"Jentsch"},{"first_name":"Ulrike-Helene","last_name":"Taron","full_name":"Taron, Ulrike-Helene"},{"full_name":"Schütz, Tatjana","last_name":"Schütz","first_name":"Tatjana"},{"full_name":"Schepanski, Kerstin","first_name":"Kerstin","last_name":"Schepanski"},{"full_name":"Banaschewski, Tobias","last_name":"Banaschewski","first_name":"Tobias"},{"last_name":"Neidhart","first_name":"Maja","full_name":"Neidhart, Maja"},{"first_name":"Andreas","last_name":"Meyer-Lindenberg","full_name":"Meyer-Lindenberg, Andreas"},{"last_name":"Tost","first_name":"Heike","full_name":"Tost, Heike"},{"full_name":"Holz, Nathalie","last_name":"Holz","first_name":"Nathalie"},{"full_name":"Schwarz, Emanuel","last_name":"Schwarz","first_name":"Emanuel"},{"last_name":"Stringaris","first_name":"Argyris","full_name":"Stringaris, Argyris"},{"full_name":"Christmann, Nina","last_name":"Christmann","first_name":"Nina"},{"first_name":"Karina","last_name":"Janson","full_name":"Janson, Karina"},{"full_name":"Nees, Frauke","last_name":"Nees","first_name":"Frauke"},{"full_name":"Neidhart, Maja","first_name":"Maja","last_name":"Neidhart"},{"full_name":"Seefried, Beke","first_name":"Beke","last_name":"Seefried"},{"full_name":"Aden, Rieke","last_name":"Aden","first_name":"Rieke"},{"last_name":"Andreassen","first_name":"Ole A.","full_name":"Andreassen, Ole A."},{"last_name":"Westlye","first_name":"Lars T.","full_name":"Westlye, Lars T."},{"full_name":"van der Meer, Dennis","last_name":"van der Meer","first_name":"Dennis"},{"first_name":"Sara","last_name":"Fernández-Cabello","full_name":"Fernández-Cabello, Sara"},{"full_name":"Kjelkenes, Rikka","last_name":"Kjelkenes","first_name":"Rikka"},{"first_name":"Helga","last_name":"Ask","full_name":"Ask, Helga"},{"last_name":"Rapp","first_name":"Michael","full_name":"Rapp, Michael"},{"first_name":"Mira","last_name":"Tschorn","full_name":"Tschorn, Mira"},{"last_name":"Böttger","first_name":"Sarah Jane","full_name":"Böttger, Sarah Jane"},{"last_name":"Marquand","first_name":"Andre","full_name":"Marquand, Andre"},{"last_name":"Bernas","first_name":"Antoine","full_name":"Bernas, Antoine"},{"last_name":"Novarino","first_name":"Gaia","orcid":"0000-0002-7673-7178","full_name":"Novarino, Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Slater, Mel","last_name":"Slater","first_name":"Mel"},{"last_name":"Gallego","first_name":"Jaime","full_name":"Gallego, Jaime"},{"first_name":"Álvaro","last_name":"Pastor","full_name":"Pastor, Álvaro"},{"full_name":"Feixas, Guillem","first_name":"Guillem","last_name":"Feixas"},{"full_name":"Eiroa-Orosa, Francisco José","first_name":"Francisco José","last_name":"Eiroa-Orosa"},{"first_name":"Markus M.","last_name":"Nöthen","full_name":"Nöthen, Markus M."},{"full_name":"Forstner, Andreas J.","first_name":"Andreas J.","last_name":"Forstner"},{"first_name":"Isabelle","last_name":"Claus","full_name":"Claus, Isabelle"},{"full_name":"Mathey, Carina","last_name":"Mathey","first_name":"Carina"},{"full_name":"Heilmann-Heimbach, Stefanie","last_name":"Heilmann-Heimbach","first_name":"Stefanie"},{"first_name":"Per","last_name":"Hoffmann","full_name":"Hoffmann, Per"},{"first_name":"Abigail","last_name":"Miller","full_name":"Miller, Abigail"},{"last_name":"Sommer","first_name":"Peter","full_name":"Sommer, Peter"},{"first_name":"Karen","last_name":"Schmitt","full_name":"Schmitt, Karen"},{"first_name":"Johannes","last_name":"Wilbertz","full_name":"Wilbertz, Johannes"},{"full_name":"Patraskaki, Myrto","first_name":"Myrto","last_name":"Patraskaki"},{"full_name":"Jirsa, Viktor","first_name":"Viktor","last_name":"Jirsa"},{"full_name":"Petkoski, Spase","last_name":"Petkoski","first_name":"Spase"},{"full_name":"Athanasiadis, Anastasios-Polykarpos","first_name":"Anastasios-Polykarpos","last_name":"Athanasiadis"},{"full_name":"Spanlang, Bernhard","first_name":"Bernhard","last_name":"Spanlang"},{"full_name":"Pearmund, Charlie","first_name":"Charlie","last_name":"Pearmund"},{"last_name":"Hese","first_name":"Sören","full_name":"Hese, Sören"},{"first_name":"Paul","last_name":"Renner","full_name":"Renner, Paul"},{"full_name":"Jia, Tianye","last_name":"Jia","first_name":"Tianye"},{"first_name":"Xiao","last_name":"Chang","full_name":"Chang, Xiao"},{"last_name":"Dai","first_name":"Yuxiang","full_name":"Dai, Yuxiang"},{"full_name":"Xia, Yunman","first_name":"Yunman","last_name":"Xia"},{"first_name":"Yuzhu","last_name":"Li","full_name":"Li, Yuzhu"},{"full_name":"Zhang, Yanqing","last_name":"Zhang","first_name":"Yanqing"},{"full_name":"Calhoun, Vince","last_name":"Calhoun","first_name":"Vince"},{"first_name":"Paul","last_name":"Thompson","full_name":"Thompson, Paul"},{"full_name":"Clinton, Nicholas","first_name":"Nicholas","last_name":"Clinton"},{"full_name":"Desrivières, Sylvane","last_name":"Desrivières","first_name":"Sylvane"},{"full_name":"Agunbiade, Kofoworola","last_name":"Agunbiade","first_name":"Kofoworola"},{"full_name":"Yu, Xinyang","first_name":"Xinyang","last_name":"Yu"},{"full_name":"Zhang, Zuo","last_name":"Zhang","first_name":"Zuo"},{"last_name":"Chen","first_name":"Di","full_name":"Chen, Di"},{"full_name":"Young, Allan H.","last_name":"Young","first_name":"Allan H."},{"full_name":"Schwalber, Ameli","last_name":"Schwalber","first_name":"Ameli"},{"first_name":"Vanessa","last_name":"Köhler","full_name":"Köhler, Vanessa"},{"full_name":"Stahl, Bernd","first_name":"Bernd","last_name":"Stahl"},{"full_name":"Ogoh, George","first_name":"George","last_name":"Ogoh"},{"last_name":"Schikowski","first_name":"Tamara","full_name":"Schikowski, Tamara"},{"full_name":"Brandlistuen, Ragnhild","first_name":"Ragnhild","last_name":"Brandlistuen"}],"project":[{"name":"Reducing the impact of major environmental challenges on mental health","_id":"349d1832-11ca-11ed-8bc3-d79b574010e0","grant_number":"101057429"}],"doi":"10.1038/s44220-025-00519-y","year":"2025","day":"01","page":"1532-1544","scopus_import":"1","month":"12","title":"Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai","type":"journal_article","abstract":[{"text":"Residents of low-latitude megacities face growing vulnerability to humid-heat stress under urbanization and global warming, yet limited research has assessed the morbidity burden of mental and behavioral disorders (MBDs) linked to humid-heat exposures in these cities. Here we quantify the hospital admissions of MBDs in Shanghai, a megacity of over 25 million inhabitants, attributable to humid heat, and project future burdens under various greenhouse gas (GHG)-emission and population scenarios. Humid heat drives a higher morbidity burden than high temperature alone, especially in humid-heat nights. Without population change, the humid-heat-related morbidity burden of MBDs would increase by 68.2% (95% empirical confidence interval 56.7%–81.6%) under the highest-GHG-emission scenario by the 2090s, while 8,465 (95% empirical confidence interval 6,928–10,053) cases would be avoided by reducing emissions to the lowest pathway. With projected population decline, the attributable hospital admissions will decrease toward century’s end. These findings highlight the benefit of GHG mitigation in reducing the growing MBD risks posed by extreme humid heat.","lang":"eng"}],"date_created":"2025-12-29T12:11:28Z","quality_controlled":"1","status":"public"},{"month":"12","title":"Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors","related_material":{"link":[{"url":"https://github.com/Alex-Fuster/hybrids_drought","relation":"software"}]},"article_number":"e70129","article_type":"original","project":[{"call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships"}],"author":[{"full_name":"Fuster‐Calvo, Alexandre","last_name":"Fuster‐Calvo","first_name":"Alexandre"},{"full_name":"Jaworski, Coline C.","first_name":"Coline C.","last_name":"Jaworski"},{"orcid":"0000-0002-8511-0254","first_name":"Thomas","last_name":"Ellis","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","full_name":"Ellis, Thomas"},{"id":"3B4A7CE2-F248-11E8-B48F-1D18A9856A87","full_name":"Baskett, Carina","first_name":"Carina","last_name":"Baskett","orcid":"0000-0002-7354-8574"}],"year":"2025","doi":"10.1002/ajb2.70129","day":"01","scopus_import":"1","quality_controlled":"1","status":"public","type":"journal_article","abstract":[{"text":"Premise: What maintains trait divergence in the face of gene flow? Two varieties of wild snapdragon (Antirrhinum majus) characterized by divergent flower color hybridize in their native range. Selection on flower color genes is indicated by sharp clines, but the selective agents have not been demonstrated. Although previous work has focused on pollinators, pigmentation genes can also contribute to abiotic stress tolerance. We hypothesized that pigmentation in A. majus mediates stress tolerance, which could contribute to hybrid zone maintenance through parental niche divergence or hybrid maladaptation. Specifically, we tested whether morphotype mediates drought tolerance in an experiment comparing magenta-flowered var. pseudomajus, yellow-flowered var. striatum, and their pink-flowered hybrid cross.\r\nMethods: We experimentally compared drought tolerance of each morphotype from allopatric crosses within and between varieties using three greenhouse treatments. Control plants were watered as needed, while drought-treated plants were watered half as often, either from the transplant stage (“early” drought), or from flowering onset (“late” drought).\r\nResults: Parental morphotypes responded identically to drought in fitness and most phenotypic traits. However, hybrids had lower survival (14%) under late drought stress than parental morphotypes (70%). All hybrids that flowered in the late drought treatment died, compared to ~20% of flowering parental morphotypes.\r\nConclusions: Hybrid maladaptation to abiotic stress could potentially contribute to flower color divergence in the face of gene flow in A. majus. Further research should test the relevance of our results to field conditions and explicitly probe the role of flower color genes in drought tolerance.","lang":"eng"}],"date_created":"2025-12-29T12:14:26Z","date_updated":"2026-01-05T11:56:22Z","article_processing_charge":"No","_id":"20869","issue":"12","language":[{"iso":"eng"}],"OA_type":"closed access","external_id":{"pmid":["41327576 "]},"publication_identifier":{"issn":["0002-9122"],"eissn":["1537-2197"]},"citation":{"ieee":"A. Fuster‐Calvo, C. C. Jaworski, T. Ellis, and C. Baskett, “Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors,” <i>American Journal of Botany</i>, vol. 112, no. 12. Wiley, 2025.","chicago":"Fuster‐Calvo, Alexandre, Coline C. Jaworski, Thomas Ellis, and Carina Baskett. “Reduced Fitness under Drought Stress in F1 Hybrids of Antirrhinum Majus Varieties with Divergent Flower Colors.” <i>American Journal of Botany</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/ajb2.70129\">https://doi.org/10.1002/ajb2.70129</a>.","ista":"Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. 2025. Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors. American Journal of Botany. 112(12), e70129.","short":"A. Fuster‐Calvo, C.C. Jaworski, T. Ellis, C. Baskett, American Journal of Botany 112 (2025).","ama":"Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors. <i>American Journal of Botany</i>. 2025;112(12). doi:<a href=\"https://doi.org/10.1002/ajb2.70129\">10.1002/ajb2.70129</a>","mla":"Fuster‐Calvo, Alexandre, et al. “Reduced Fitness under Drought Stress in F1 Hybrids of Antirrhinum Majus Varieties with Divergent Flower Colors.” <i>American Journal of Botany</i>, vol. 112, no. 12, e70129, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/ajb2.70129\">10.1002/ajb2.70129</a>.","apa":"Fuster‐Calvo, A., Jaworski, C. C., Ellis, T., &#38; Baskett, C. (2025). Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors. <i>American Journal of Botany</i>. Wiley. <a href=\"https://doi.org/10.1002/ajb2.70129\">https://doi.org/10.1002/ajb2.70129</a>"},"pmid":1,"department":[{"_id":"NiBa"}],"ec_funded":1,"oa_version":"None","volume":112,"date_published":"2025-12-01T00:00:00Z","publication_status":"published","publisher":"Wiley","acknowledgement":"Thank you to Doug Schemske and Nick Barton forcritically reviewing the manuscript, Beatriz Pablo Car-mona for assisting with data collection, Melinda Pickupand Eva Cereghetti for seedlings, and Louise Arathoon,Ksenia Khudiakova, Georg Rieckh, Daria Shiplina, andAnja Westram for help with experimental maintenance.We sincerely thank the Associate Editor Brenda Grewelland two anonymous reviewers for their thoughtfulcomments and suggestions, which substantially improved the clarity and quality of our manuscript. C.B. receivedfunding from the European Union's Horizon 2020 researchand innovation programme under the Marie Skłodowska‐Curie Grant Agreement No. 754411","publication":"American Journal of Botany","intvolume":"       112","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"type":"book_chapter","date_created":"2025-12-29T12:16:22Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Transcriptomics in Atherosclerosis","abstract":[{"lang":"eng","text":"RNA sequencing (RNA-seq) methodologies have evolved rapidly, offering powerful tools to study gene expression, transcriptome dynamics, and molecular mechanisms in various biological contexts. However, the complexity of these approaches poses challenges in data interpretation, sensitivity, and applicability. This chapter provides a comprehensive overview of RNA-seq methodologies, highlighting their advantages, limitations, and applications, particularly in cardiovascular research. Bulk RNA sequencing enables high-throughput gene expression profiling but lacks the resolution to capture cellular heterogeneity and spatial context. Direct RNA sequencing preserves native RNA modifications, offering insights into post-transcriptional regulation, though it remains technically challenging. Single-cell RNA sequencing (scRNA-seq) and spatial transcriptomics (ST) bridge these gaps by resolving transcriptomic complexity at the cellular level and within tissue architecture, providing crucial insights into disease mechanisms such as atherosclerosis. By summarizing the strengths and limitations of these methodologies, this chapter aims to guide researchers in selecting the most suitable transcriptomic approach for their studies, ultimately advancing precision medicine and biomarker discovery in cardiovascular disease."}],"editor":[{"full_name":"Devaux, Yvan","last_name":"Devaux","first_name":"Yvan"},{"first_name":"Miron","last_name":"Sopic","full_name":"Sopic, Miron"}],"date_published":"2025-10-24T00:00:00Z","status":"public","quality_controlled":"1","oa_version":"None","publication_status":"published","publisher":"Elsevier","language":[{"iso":"eng"}],"OA_type":"closed access","publication_identifier":{"isbn":["9780443330643"]},"citation":{"apa":"Stopa, V., Sopić, M., Li, G., Sluimer, J., Basílio, J., van der Laan, S. W., … Hochreiter, B. (2025). Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond. In Y. Devaux &#38; M. Sopic (Eds.), <i>Transcriptomics in Atherosclerosis</i> (pp. 131–172). Elsevier. <a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">https://doi.org/10.1016/b978-0-443-33064-3.00016-5</a>","ama":"Stopa V, Sopić M, Li G, et al. Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond. In: Devaux Y, Sopic M, eds. <i>Transcriptomics in Atherosclerosis</i>. Elsevier; 2025:131-172. doi:<a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">10.1016/b978-0-443-33064-3.00016-5</a>","mla":"Stopa, Victoria, et al. “Essentials of Transcriptomic Methods: Navigating through RNA Sequencing and Beyond.” <i>Transcriptomics in Atherosclerosis</i>, edited by Yvan Devaux and Miron Sopic, Elsevier, 2025, pp. 131–72, doi:<a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">10.1016/b978-0-443-33064-3.00016-5</a>.","short":"V. Stopa, M. Sopić, G. Li, J. Sluimer, J. Basílio, S.W. van der Laan, D.P. Kreil, Y. Devaux, B. Hochreiter, in:, Y. Devaux, M. Sopic (Eds.), Transcriptomics in Atherosclerosis, Elsevier, 2025, pp. 131–172.","ista":"Stopa V, Sopić M, Li G, Sluimer J, Basílio J, van der Laan SW, Kreil DP, Devaux Y, Hochreiter B. 2025.Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond. In: Transcriptomics in Atherosclerosis. , 131–172.","chicago":"Stopa, Victoria, Miron Sopić, Guanliang Li, Judith Sluimer, José Basílio, Sander W. van der Laan, David P. Kreil, Yvan Devaux, and Bernhard Hochreiter. “Essentials of Transcriptomic Methods: Navigating through RNA Sequencing and Beyond.” In <i>Transcriptomics in Atherosclerosis</i>, edited by Yvan Devaux and Miron Sopic, 131–72. Elsevier, 2025. <a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">https://doi.org/10.1016/b978-0-443-33064-3.00016-5</a>.","ieee":"V. Stopa <i>et al.</i>, “Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond,” in <i>Transcriptomics in Atherosclerosis</i>, Y. Devaux and M. Sopic, Eds. Elsevier, 2025, pp. 131–172."},"day":"24","page":"131-172","scopus_import":"1","department":[{"_id":"Bio"}],"author":[{"last_name":"Stopa","first_name":"Victoria","full_name":"Stopa, Victoria"},{"full_name":"Sopić, Miron","last_name":"Sopić","first_name":"Miron"},{"last_name":"Li","first_name":"Guanliang","full_name":"Li, Guanliang"},{"first_name":"Judith","last_name":"Sluimer","full_name":"Sluimer, Judith"},{"full_name":"Basílio, José","first_name":"José","last_name":"Basílio"},{"full_name":"van der Laan, Sander W.","last_name":"van der Laan","first_name":"Sander W."},{"full_name":"Kreil, David P.","last_name":"Kreil","first_name":"David P."},{"full_name":"Devaux, Yvan","first_name":"Yvan","last_name":"Devaux"},{"full_name":"Hochreiter, Bernhard","id":"e6cab3de-17f6-11ed-9210-c1e42e045e9d","first_name":"Bernhard","last_name":"Hochreiter"}],"year":"2025","doi":"10.1016/b978-0-443-33064-3.00016-5","_id":"20870","title":"Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond","date_updated":"2026-01-05T11:49:54Z","month":"10","article_processing_charge":"No"},{"citation":{"short":"B. Felix, K. Reinhard, B. Nuttin, A. Sans Dublanc, C. Liu, V. Tong, J.S. Murmann, K. Wierda, K. Farrow, H. Hoekstra, (2025).","ista":"Felix B, Reinhard K, Nuttin B, Sans Dublanc A, Liu C, Tong V, Murmann JS, Wierda K, Farrow K, Hoekstra H. 2025. The neural basis of species-specific defensive behaviour in Peromyscus mice, Dryad, <a href=\"https://doi.org/10.5061/DRYAD.Q2BVQ83XC\">10.5061/DRYAD.Q2BVQ83XC</a>.","mla":"Felix, Baier, et al. <i>The Neural Basis of Species-Specific Defensive Behaviour in Peromyscus Mice</i>. Dryad, 2025, doi:<a href=\"https://doi.org/10.5061/DRYAD.Q2BVQ83XC\">10.5061/DRYAD.Q2BVQ83XC</a>.","ama":"Felix B, Reinhard K, Nuttin B, et al. The neural basis of species-specific defensive behaviour in Peromyscus mice. 2025. doi:<a href=\"https://doi.org/10.5061/DRYAD.Q2BVQ83XC\">10.5061/DRYAD.Q2BVQ83XC</a>","apa":"Felix, B., Reinhard, K., Nuttin, B., Sans Dublanc, A., Liu, C., Tong, V., … Hoekstra, H. (2025). The neural basis of species-specific defensive behaviour in Peromyscus mice. Dryad. <a href=\"https://doi.org/10.5061/DRYAD.Q2BVQ83XC\">https://doi.org/10.5061/DRYAD.Q2BVQ83XC</a>","ieee":"B. Felix <i>et al.</i>, “The neural basis of species-specific defensive behaviour in Peromyscus mice.” Dryad, 2025.","chicago":"Felix, Baier, Katja Reinhard, Bram Nuttin, Arnau Sans Dublanc, Chen Liu, Victoria Tong, Julie Stefanie Murmann, Keimpe Wierda, Karl Farrow, and Hopi Hoekstra. “The Neural Basis of Species-Specific Defensive Behaviour in Peromyscus Mice.” Dryad, 2025. <a href=\"https://doi.org/10.5061/DRYAD.Q2BVQ83XC\">https://doi.org/10.5061/DRYAD.Q2BVQ83XC</a>."},"day":"23","department":[{"_id":"GradSch"}],"author":[{"full_name":"Felix, Baier","last_name":"Felix","first_name":"Baier"},{"full_name":"Reinhard, Katja","first_name":"Katja","last_name":"Reinhard"},{"full_name":"Nuttin, Bram","first_name":"Bram","last_name":"Nuttin"},{"full_name":"Sans Dublanc, Arnau","last_name":"Sans Dublanc","first_name":"Arnau"},{"first_name":"Chen","last_name":"Liu","full_name":"Liu, Chen"},{"full_name":"Tong, Victoria","last_name":"Tong","first_name":"Victoria"},{"first_name":"Julie Stefanie","last_name":"Murmann","full_name":"Murmann, Julie Stefanie","id":"1d390868-f128-11eb-9611-a0ca5f7833b5"},{"first_name":"Keimpe","last_name":"Wierda","full_name":"Wierda, Keimpe"},{"first_name":"Karl","last_name":"Farrow","full_name":"Farrow, Karl"},{"last_name":"Hoekstra","first_name":"Hopi","full_name":"Hoekstra, Hopi"}],"doi":"10.5061/DRYAD.Q2BVQ83XC","year":"2025","OA_type":"hybrid","OA_place":"repository","related_material":{"record":[{"id":"20101","relation":"used_in_publication","status":"public"}]},"_id":"20883","title":"The neural basis of species-specific defensive behaviour in Peromyscus mice","date_updated":"2026-01-05T11:38:41Z","article_processing_charge":"No","month":"06","date_created":"2025-12-30T07:36:29Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Evading imminent predator threat is critical for survival. Effective defensive strategies can vary, even between closely related species. However, the neural basis of such species-specific behaviours is still poorly understood. Here we find that two sister species of deer mice (genus Peromyscus) show different responses to the same looming stimulus: P. maniculatus, which occupies densely vegetated habitats, predominantly escapes, while the open field specialist, P. polionotus, briefly freezes. This difference arises from species-specific escape thresholds, is largely context-independent, and can be triggered by both visual and auditory threat stimuli. Using immunohistochemistry and electrophysiological recordings, we find that although visual threat activates the superior colliculus in both species, the role of the dorsal periaqueductal gray (dPAG) in driving behaviour differs. While dPAG activity scales with running speed in P. maniculatus, neural activity in the dPAG of P. polionotus correlates poorly with movement, including during visually triggered escape. Moreover, optogenetic activation of dPAG neurons elicits acceleration in P. maniculatus but not P. polionotus, while their chemogenetic inhibition during a looming stimulus delays escape onset in P. maniculatus to match that of P. polionotus. Together, we trace species-specific escape thresholds to a central circuit node, downstream of peripheral sensory neurons, localizing an ecologically relevant behavioural difference to a specific region of the mammalian brain."}],"main_file_link":[{"url":"https://doi.org/10.5061/dryad.q2bvq83xc","open_access":"1"}],"type":"research_data_reference","oa":1,"publisher":"Dryad","date_published":"2025-06-23T00:00:00Z","status":"public","oa_version":"Submitted Version"},{"external_id":{"pmid":["41455105"]},"publication_identifier":{"eissn":["2666-1667"]},"citation":{"apa":"Kobayashi, W., Michael, A. K., Ruangroengkulrith, S., Kümmecke, M., &#38; Tachibana, K. (2025). Protocol for integrative analysis of transcription factor-nucleosome interactions using SeEN-seq and cryo-EM structure determination. <i>STAR Protocols</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.xpro.2025.104295\">https://doi.org/10.1016/j.xpro.2025.104295</a>","mla":"Kobayashi, Wataru, et al. “Protocol for Integrative Analysis of Transcription Factor-Nucleosome Interactions Using SeEN-Seq and Cryo-EM Structure Determination.” <i>STAR Protocols</i>, vol. 7, 104295, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.xpro.2025.104295\">10.1016/j.xpro.2025.104295</a>.","ama":"Kobayashi W, Michael AK, Ruangroengkulrith S, Kümmecke M, Tachibana K. Protocol for integrative analysis of transcription factor-nucleosome interactions using SeEN-seq and cryo-EM structure determination. <i>STAR Protocols</i>. 2025;7. doi:<a href=\"https://doi.org/10.1016/j.xpro.2025.104295\">10.1016/j.xpro.2025.104295</a>","ista":"Kobayashi W, Michael AK, Ruangroengkulrith S, Kümmecke M, Tachibana K. 2025. Protocol for integrative analysis of transcription factor-nucleosome interactions using SeEN-seq and cryo-EM structure determination. STAR Protocols. 7, 104295.","short":"W. Kobayashi, A.K. Michael, S. Ruangroengkulrith, M. Kümmecke, K. Tachibana, STAR Protocols 7 (2025).","chicago":"Kobayashi, Wataru, Alicia K. Michael, Siwat Ruangroengkulrith, Maximilian Kümmecke, and Kikuë Tachibana. “Protocol for Integrative Analysis of Transcription Factor-Nucleosome Interactions Using SeEN-Seq and Cryo-EM Structure Determination.” <i>STAR Protocols</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.xpro.2025.104295\">https://doi.org/10.1016/j.xpro.2025.104295</a>.","ieee":"W. Kobayashi, A. K. Michael, S. Ruangroengkulrith, M. Kümmecke, and K. Tachibana, “Protocol for integrative analysis of transcription factor-nucleosome interactions using SeEN-seq and cryo-EM structure determination,” <i>STAR Protocols</i>, vol. 7. Elsevier, 2025."},"department":[{"_id":"AlMi"}],"pmid":1,"language":[{"iso":"eng"}],"OA_place":"publisher","OA_type":"gold","has_accepted_license":"1","date_updated":"2026-01-05T11:16:11Z","article_processing_charge":"Yes","_id":"20924","publication":"STAR Protocols","intvolume":"         7","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank R.H. Kim, A. Casper, and R. Gautsch for sequencing at the NGS facility (RRID:SCR_025746). K.T. is an Honorary Professor at the Department of Biology, Ludwig-Maximilians-University, Munich, Germany. This study was funded by European Research Council grant ERC-CoG-818556 TotipotentZygotChrom (K.T.), Max Planck Society (K.T.), and ERC Starting Grant “ChromaChrono” 101162145 (A.K.M.).","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"publication_status":"epub_ahead","publisher":"Elsevier","oa_version":"Published Version","volume":7,"date_published":"2025-12-26T00:00:00Z","author":[{"full_name":"Kobayashi, Wataru","last_name":"Kobayashi","first_name":"Wataru"},{"orcid":"0000-0002-6080-839X","last_name":"Michael","first_name":"Alicia","id":"6437c950-2a03-11ee-914d-d6476dd7b75c","full_name":"Michael, Alicia"},{"first_name":"Siwat","last_name":"Ruangroengkulrith","full_name":"Ruangroengkulrith, Siwat"},{"full_name":"Kümmecke, Maximilian","first_name":"Maximilian","last_name":"Kümmecke"},{"last_name":"Tachibana","first_name":"Kikuë","full_name":"Tachibana, Kikuë"}],"project":[{"grant_number":"101162145","_id":"9136c684-16d5-11f0-9cad-91c0177b365f","name":"Circadian structural transitions of chromatin"}],"year":"2025","doi":"10.1016/j.xpro.2025.104295","day":"26","DOAJ_listed":"1","scopus_import":"1","article_number":"104295","article_type":"original","PlanS_conform":"1","month":"12","title":"Protocol for integrative analysis of transcription factor-nucleosome interactions using SeEN-seq and cryo-EM structure determination","abstract":[{"text":"Pioneer transcription factors (TFs) possess the ability to read out DNA motifs embedded within nucleosomes, driving changes in gene expression during cellular differentiation and reprogramming. Here, we present selected engagement on nucleosome sequencing (SeEN-seq), a protocol designed to systematically identify potential TF-binding sites on the nucleosome. We describe steps for nucleosome library assembly, SeEN-seq assay, and cryoelectron microscopy (cryo-EM) sample preparation. This protocol facilitates the preparation of homogeneous pioneer TF-nucleosome complexes for cryo-EM structure determination using single-particle analysis.\r\nFor complete details on the use and execution of this protocol, please refer to Michael et al.1","lang":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.xpro.2025.104295"}],"date_created":"2026-01-04T23:01:33Z","oa":1,"type":"journal_article","corr_author":"1","quality_controlled":"1","status":"public"},{"article_number":"5","article_type":"original","year":"2025","doi":"10.1007/s11005-025-02037-5","project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331","call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta"}],"author":[{"full_name":"Erdös, László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","first_name":"László","last_name":"Erdös","orcid":"0000-0001-5366-9603"},{"last_name":"Henheik","first_name":"Sven Joscha","orcid":"0000-0003-1106-327X","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","full_name":"Henheik, Sven Joscha"},{"id":"1cd0554a-ea28-11f0-9f40-ff76440883cd","full_name":"Vogel, Cornelia","first_name":"Cornelia","last_name":"Vogel"}],"scopus_import":"1","day":"26","month":"12","title":"Normal typicality and dynamical typicality for a random block-band matrix model","PlanS_conform":"1","ddc":["510"],"oa":1,"type":"journal_article","main_file_link":[{"url":"https://doi.org/10.1007/s11005-025-02037-5","open_access":"1"}],"abstract":[{"lang":"eng","text":"We prove normal typicality and dynamical typicality for a (centered) random block-band matrix model with block-dependent variances. A key feature of our model is that we achieve intermediate equilibration times, an aspect that has not been proven rigorously in any model before. Our proof builds on recently established concentration estimates for products of resolvents of Wigner type random matrices (Erdős and Riabov in Commun Math Phys 405(12): 282, 2024) and an intricate analysis of the deterministic approximation."}],"date_created":"2026-01-04T23:01:33Z","quality_controlled":"1","status":"public","corr_author":"1","has_accepted_license":"1","language":[{"iso":"eng"}],"OA_type":"hybrid","OA_place":"publisher","external_id":{"pmid":["41459414"]},"pmid":1,"department":[{"_id":"LaEr"}],"publication_identifier":{"eissn":["1573-0530"],"issn":["0377-9017"]},"citation":{"ista":"Erdös L, Henheik SJ, Vogel C. 2025. Normal typicality and dynamical typicality for a random block-band matrix model. Letters in Mathematical Physics. 116, 5.","short":"L. Erdös, S.J. Henheik, C. Vogel, Letters in Mathematical Physics 116 (2025).","mla":"Erdös, László, et al. “Normal Typicality and Dynamical Typicality for a Random Block-Band Matrix Model.” <i>Letters in Mathematical Physics</i>, vol. 116, 5, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1007/s11005-025-02037-5\">10.1007/s11005-025-02037-5</a>.","ama":"Erdös L, Henheik SJ, Vogel C. Normal typicality and dynamical typicality for a random block-band matrix model. <i>Letters in Mathematical Physics</i>. 2025;116. doi:<a href=\"https://doi.org/10.1007/s11005-025-02037-5\">10.1007/s11005-025-02037-5</a>","apa":"Erdös, L., Henheik, S. J., &#38; Vogel, C. (2025). Normal typicality and dynamical typicality for a random block-band matrix model. <i>Letters in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11005-025-02037-5\">https://doi.org/10.1007/s11005-025-02037-5</a>","ieee":"L. Erdös, S. J. Henheik, and C. Vogel, “Normal typicality and dynamical typicality for a random block-band matrix model,” <i>Letters in Mathematical Physics</i>, vol. 116. Springer Nature, 2025.","chicago":"Erdös, László, Sven Joscha Henheik, and Cornelia Vogel. “Normal Typicality and Dynamical Typicality for a Random Block-Band Matrix Model.” <i>Letters in Mathematical Physics</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s11005-025-02037-5\">https://doi.org/10.1007/s11005-025-02037-5</a>."},"article_processing_charge":"Yes (via OA deal)","date_updated":"2026-01-05T11:22:25Z","_id":"20925","acknowledgement":"L.E. and J.H. are supported by the ERC Advanced Grant “RMTBeyond” No. 101020331. Moreover, J.H. acknowledges (partial) financial support by the ERC Consolidator Grant “ProbQuant” (jointly with the Swiss State Secretariat for Education, Research and Innovation). C.V. was (partially) supported by the German Academic Scholarship Foundation and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – TRR 352 – Project-ID 470903074. Moreover, C.V. acknowledges (partial) financial support by the ERC Starting Grant “FermiMath\" No. 101040991 and the ERC Consolidator Grant “RAMBAS” No. 10104424, funded by the European Union. Open access funding provided by Institute of Science and Technology (IST Austria).","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"publication":"Letters in Mathematical Physics","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"       116","oa_version":"Published Version","ec_funded":1,"date_published":"2025-12-26T00:00:00Z","volume":116,"publisher":"Springer Nature","publication_status":"epub_ahead"},{"title":"A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials","month":"12","article_type":"original","day":"10","page":"12709-12724","scopus_import":"1","author":[{"full_name":"Kim, Dongjin","last_name":"Kim","first_name":"Dongjin"},{"full_name":"Wang, Xiaoyu","id":"8dff9c62-32b0-11ee-9fa8-fc73025e10f3","first_name":"Xiaoyu","last_name":"Wang"},{"first_name":"Santiago","last_name":"Vargas","full_name":"Vargas, Santiago"},{"full_name":"Zhong, Peichen","last_name":"Zhong","first_name":"Peichen"},{"full_name":"King, Daniel S.","first_name":"Daniel S.","last_name":"King"},{"full_name":"Inizan, Theo Jaffrelot","first_name":"Theo Jaffrelot","last_name":"Inizan"},{"id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","full_name":"Cheng, Bingqing","orcid":"0000-0002-3584-9632","first_name":"Bingqing","last_name":"Cheng"}],"doi":"10.1021/acs.jctc.5c01400","year":"2025","status":"public","arxiv":1,"quality_controlled":"1","corr_author":"1","type":"journal_article","oa":1,"date_created":"2026-01-04T23:01:33Z","abstract":[{"text":"Most current machine learning interatomic potentials (MLIPs) rely on short-range approximations, without explicit treatment of long-range electrostatics. To address this, we recently developed the Latent Ewald Summation (LES) method, which infers electrostatic interactions, polarization, and Born effective charges (BECs), just by learning from energy and force training data. Here, we present LES as a standalone library, compatible with any short-range MLIP, and demonstrate its integration with methods such as MACE, NequIP, Allegro, CACE, CHGNet, and UMA. We benchmark LES-enhanced models on distinct systems, including bulk water, polar dipeptides, and gold dimer adsorption on defective substrates, and show that LES not only captures correct electrostatics but also improves accuracy. Additionally, we scale LES to large and chemically diverse data by training MACELES-OFF on the SPICE set containing molecules and clusters, making a universal MLIP with electrostatics for organic systems, including biomolecules. MACELES-OFF is more accurate than its short-range counterpart (MACE-OFF) trained on the same data set, predicts dipoles and BECs reliably, and has better descriptions of bulk liquids. By enabling efficient long-range electrostatics without directly training on electrical properties, LES paves the way for electrostatic foundation MLIPs.","lang":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2507.14302"}],"_id":"20926","date_updated":"2026-01-05T11:34:21Z","article_processing_charge":"No","issue":"24","OA_place":"repository","language":[{"iso":"eng"}],"OA_type":"green","publication_identifier":{"eissn":["1549-9626"],"issn":["1549-9618"]},"citation":{"apa":"Kim, D., Wang, X., Vargas, S., Zhong, P., King, D. S., Inizan, T. J., &#38; Cheng, B. (2025). A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials. <i>Journal of Chemical Theory and Computation</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">https://doi.org/10.1021/acs.jctc.5c01400</a>","mla":"Kim, Dongjin, et al. “A Universal Augmentation Framework for Long-Range Electrostatics in Machine Learning Interatomic Potentials.” <i>Journal of Chemical Theory and Computation</i>, vol. 21, no. 24, American Chemical Society, 2025, pp. 12709–24, doi:<a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">10.1021/acs.jctc.5c01400</a>.","ama":"Kim D, Wang X, Vargas S, et al. A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials. <i>Journal of Chemical Theory and Computation</i>. 2025;21(24):12709-12724. doi:<a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">10.1021/acs.jctc.5c01400</a>","short":"D. Kim, X. Wang, S. Vargas, P. Zhong, D.S. King, T.J. Inizan, B. Cheng, Journal of Chemical Theory and Computation 21 (2025) 12709–12724.","ista":"Kim D, Wang X, Vargas S, Zhong P, King DS, Inizan TJ, Cheng B. 2025. A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials. Journal of Chemical Theory and Computation. 21(24), 12709–12724.","chicago":"Kim, Dongjin, Xiaoyu Wang, Santiago Vargas, Peichen Zhong, Daniel S. King, Theo Jaffrelot Inizan, and Bingqing Cheng. “A Universal Augmentation Framework for Long-Range Electrostatics in Machine Learning Interatomic Potentials.” <i>Journal of Chemical Theory and Computation</i>. American Chemical Society, 2025. <a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">https://doi.org/10.1021/acs.jctc.5c01400</a>.","ieee":"D. Kim <i>et al.</i>, “A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials,” <i>Journal of Chemical Theory and Computation</i>, vol. 21, no. 24. American Chemical Society, pp. 12709–12724, 2025."},"department":[{"_id":"GradSch"},{"_id":"BiCh"}],"pmid":1,"external_id":{"arxiv":["2507.14302"],"pmid":["41368735 "]},"volume":21,"date_published":"2025-12-10T00:00:00Z","oa_version":"Preprint","publication_status":"published","publisher":"American Chemical Society","acknowledgement":"Research reported in this publication was supported by the National Institute Of General Medical Sciences of the National Institutes of Health under Award Number R35GM159986. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. D.K. and B.C. acknowledge funding from Toyota Research Institute Synthesis Advanced Research Challenge. T.J.I., D.S.K. and P.Z. acknowledge funding from BIDMaP Postdoctoral Fellowship. T.J.I. used resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy Office of Science User Facility using NERSC award DOEERCAP0031751 ′GenAI@NERSC’. The authors thank Bowen Deng for valuable discussions on MatGL implementation, and thank Gabor Csanyi for stimulating discussions.","intvolume":"        21","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Journal of Chemical Theory and Computation"},{"article_number":"214443","article_type":"original","author":[{"last_name":"Mandal","first_name":"Supriya","full_name":"Mandal, Supriya"},{"first_name":"Krishnendu","last_name":"Maji","full_name":"Maji, Krishnendu","id":"76bc9e9f-ba0b-11ee-8184-90edabd17a58"},{"orcid":"0000-0001-8319-2148","last_name":"Kapoor","first_name":"Lucky","full_name":"Kapoor, Lucky","id":"84b9700b-15b2-11ec-abd3-831089e67615"},{"first_name":"Souvik","last_name":"Sasmal","full_name":"Sasmal, Souvik"},{"full_name":"Manni, Soham","last_name":"Manni","first_name":"Soham"},{"first_name":"John","last_name":"Jesudasan","full_name":"Jesudasan, John"},{"full_name":"Raychaudhuri, Pratap","last_name":"Raychaudhuri","first_name":"Pratap"},{"first_name":"Arumugam","last_name":"Thamizhavel","full_name":"Thamizhavel, Arumugam"},{"last_name":"Deshmukh","first_name":"Mandar M.","full_name":"Deshmukh, Mandar M."}],"year":"2025","doi":"10.1103/bdd1-b8ys","day":"19","scopus_import":"1","month":"12","title":"Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system","related_material":{"record":[{"id":"20940","relation":"research_data","status":"public"}]},"oa":1,"type":"journal_article","abstract":[{"text":"Cavity-magnon polaritons are hybrid excitations from the interaction between cavity photons and magnons, the quanta of collective spin oscillations. Along with the tunability of the magnon-photon coupling strength, fast information transfer and conversion speed are desired in hybrid devices. This can be achieved utilizing the propagating nature of spin waves with nonzero momentum for their ultrafast time dynamics and reduced ohmic dissipation. Antiferromagnets are particularly interesting as hosts for magnons since stray-field interactions are minimized and they support multiple modes with distinctive magnetic-field behavior across the phase diagram. Chromium trichloride (CrCl3) is a van der Waals layered antiferromagnet having a strong easy-plane anisotropy and a weak in-plane easy-axis anisotropy. Despite some magnetic resonance studies, the impact of magnetic reorientation of spins in CrCl3 on the cavity-magnon-polariton interaction strength as a function of magnetic field remains largely unexplored. In this study, we investigate the coupling between magnons in CrCl3 and photons in a coplanar waveguide resonator as a function of magnetic field. In particular, we find that the magnon-photon coupling strength varies nonmonotonically and distinctly with the magnetic field for the acoustic and the optical magnons, which can be utilized to tune the magnon-photon coupling strength using an external magnetic field as a knob. We find the signature of spin-flop transition in the two harmonics of the cavity due to a stronger dispersive coupling between optical magnons and cavity photons at lower fields. Additionally, we find standing modes formed by spin waves with nonzero momentum associated with the two hybrid magnons when the external field is applied at an angle with the crystal plane. These modes do not undergo substantial coupling with the cavity mode unlike the antiferromagnetic modes and can be used as low-loss propagation channels in hybrid devices.","lang":"eng"}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2512.05236","open_access":"1"}],"date_created":"2026-01-04T23:01:34Z","arxiv":1,"quality_controlled":"1","status":"public","OA_place":"repository","language":[{"iso":"eng"}],"OA_type":"green","external_id":{"arxiv":["2512.05236"]},"publication_identifier":{"eissn":["2469-9969"],"issn":["2469-9950"]},"citation":{"chicago":"Mandal, Supriya, Krishnendu Maji, Lucky Kapoor, Souvik Sasmal, Soham Manni, John Jesudasan, Pratap Raychaudhuri, Arumugam Thamizhavel, and Mandar M. Deshmukh. “Cavity Based Sensing of Antiferromagnetic Canting and Nonzero-Momentum Spin Waves in a van Der Waals Cavity-Magnon-Polariton System.” <i>Physical Review B</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/bdd1-b8ys\">https://doi.org/10.1103/bdd1-b8ys</a>.","ieee":"S. Mandal <i>et al.</i>, “Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system,” <i>Physical Review B</i>, vol. 112, no. 21. American Physical Society, 2025.","apa":"Mandal, S., Maji, K., Kapoor, L., Sasmal, S., Manni, S., Jesudasan, J., … Deshmukh, M. M. (2025). Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/bdd1-b8ys\">https://doi.org/10.1103/bdd1-b8ys</a>","ama":"Mandal S, Maji K, Kapoor L, et al. Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system. <i>Physical Review B</i>. 2025;112(21). doi:<a href=\"https://doi.org/10.1103/bdd1-b8ys\">10.1103/bdd1-b8ys</a>","mla":"Mandal, Supriya, et al. “Cavity Based Sensing of Antiferromagnetic Canting and Nonzero-Momentum Spin Waves in a van Der Waals Cavity-Magnon-Polariton System.” <i>Physical Review B</i>, vol. 112, no. 21, 214443, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/bdd1-b8ys\">10.1103/bdd1-b8ys</a>.","ista":"Mandal S, Maji K, Kapoor L, Sasmal S, Manni S, Jesudasan J, Raychaudhuri P, Thamizhavel A, Deshmukh MM. 2025. Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system. Physical Review B. 112(21), 214443.","short":"S. Mandal, K. Maji, L. Kapoor, S. Sasmal, S. Manni, J. Jesudasan, P. Raychaudhuri, A. Thamizhavel, M.M. Deshmukh, Physical Review B 112 (2025)."},"department":[{"_id":"MaIb"},{"_id":"JoFi"}],"date_updated":"2026-01-05T10:07:04Z","article_processing_charge":"No","_id":"20927","issue":"21","acknowledgement":"We thank R. Vijayaraghavan, V. Singh, A. Kamra, A. Barman, M. Patankar, S. Kundu, S. Hazra, S. Sahu, A. Riswadkar, A. Bhattacharjee, and S. Das for helpful discussions and experimental assistance. We acknowledge the Swarnajayanti Fellowship of the Department of Science and Technology (for M.M.D.), DST Nanomission Grant No. SR/NM/NS-45/2016, SERB SUPRA Grant No. SPR/2019/001247, ONRG Grant No. N62909–18-1–2058, and the Department of Atomic Energy of the Government of India Grant No. 12-R&D-TFR5.10–0100 for support.","publication":"Physical Review B","intvolume":"       112","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","volume":112,"date_published":"2025-12-19T00:00:00Z","publication_status":"published","publisher":"American Physical Society"},{"language":[{"iso":"eng"}],"OA_type":"closed access","publication_identifier":{"eissn":["1089-7666"],"issn":["1070-6631"]},"citation":{"ama":"Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation. <i>Physics of Fluids</i>. 2025;37(12). doi:<a href=\"https://doi.org/10.1063/5.0303132\">10.1063/5.0303132</a>","mla":"Khatoon, Bushra, et al. “Enhanced Mass Transfer in Microgeometry Using Pulsating Velocity Inputs: Hydrodynamic Analysis and Numerical Simulation.” <i>Physics of Fluids</i>, vol. 37, no. 12, 122012, AIP Publishing, 2025, doi:<a href=\"https://doi.org/10.1063/5.0303132\">10.1063/5.0303132</a>.","ista":"Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. 2025. Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation. Physics of Fluids. 37(12), 122012.","short":"B. Khatoon, V.K. Chaudhary, S. Kamil, S.U. Hasan, M.S. Alam, Physics of Fluids 37 (2025).","apa":"Khatoon, B., Chaudhary, V. K., Kamil, S., Hasan, S. U., &#38; Alam, M. S. (2025). Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation. <i>Physics of Fluids</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0303132\">https://doi.org/10.1063/5.0303132</a>","chicago":"Khatoon, Bushra, Vikas K. Chaudhary, Shoaib Kamil, Shabih Ul Hasan, and M. Siraj Alam. “Enhanced Mass Transfer in Microgeometry Using Pulsating Velocity Inputs: Hydrodynamic Analysis and Numerical Simulation.” <i>Physics of Fluids</i>. AIP Publishing, 2025. <a href=\"https://doi.org/10.1063/5.0303132\">https://doi.org/10.1063/5.0303132</a>.","ieee":"B. Khatoon, V. K. Chaudhary, S. Kamil, S. U. Hasan, and M. S. Alam, “Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation,” <i>Physics of Fluids</i>, vol. 37, no. 12. AIP Publishing, 2025."},"department":[{"_id":"BjHo"}],"_id":"20928","date_updated":"2026-01-05T10:54:15Z","article_processing_charge":"No","issue":"12","acknowledgement":"The authors are thankful for the financial support provided by the Ministry of Education, India, and MNNIT Allahabad, as well as for the necessary equipment, computing facilities, and overall support to carry out this study.","intvolume":"        37","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Physics of Fluids","volume":37,"date_published":"2025-12-01T00:00:00Z","oa_version":"None","publication_status":"published","publisher":"AIP Publishing","article_type":"original","article_number":"122012","day":"01","scopus_import":"1","author":[{"full_name":"Khatoon, Bushra","first_name":"Bushra","last_name":"Khatoon"},{"last_name":"Chaudhary","first_name":"Vikas K.","full_name":"Chaudhary, Vikas K."},{"first_name":"Shoaib","last_name":"Kamil","full_name":"Kamil, Shoaib","id":"185a19af-dc7d-11ea-9b2f-8eb2201959e9"},{"full_name":"Hasan, Shabih Ul","first_name":"Shabih Ul","last_name":"Hasan"},{"full_name":"Alam, M. Siraj","last_name":"Alam","first_name":"M. Siraj"}],"year":"2025","doi":"10.1063/5.0303132","title":"Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation","month":"12","type":"journal_article","date_created":"2026-01-04T23:01:34Z","abstract":[{"text":"The current work focuses on the performance of hydrodynamics and mass transfer in a microchannel. A hydrodynamic model is developed for a gas–liquid (CO2–water) system and slug flow pattern. For the first time in literature, a concept of pulsating velocity input is introduced in an enhanced cross-T-junction microchannel to study the mass transfer using the physical absorption mechanism in ANSYS FLUENT R2 2024. The mass transfer model is associated with the hydrodynamic model and some user-defined functions in FLUENT. This work demonstrates that incorporating obstructions and applying trapezoidal and sinusoidal wave inputs improve the CO2 absorption rate. The obtained data are further compared with the plain T-junction microchannel in terms of mass transfer coefficient. Solubility of CO2 in three different solvents (ethyl alcohol, water, and ethylene glycol) has been revealed in an enhanced cross T-junction microchannel at two different temperatures, i.e., 298.15 and 303.15 K. The numerical simulations illustrate that an increase in temperature has an adverse effect on the mass transfer rate.","lang":"eng"}],"status":"public","quality_controlled":"1"}]