[{"status":"public","scopus_import":"1","issue":"3","_id":"484","publist_id":"7336","abstract":[{"text":"We consider the dynamics of a large quantum system of N identical bosons in 3D interacting via a two-body potential of the form N3β-1w(Nβ(x - y)). For fixed 0 = β &lt; 1/3 and large N, we obtain a norm approximation to the many-body evolution in the Nparticle Hilbert space. The leading order behaviour of the dynamics is determined by Hartree theory while the second order is given by Bogoliubov theory.","lang":"eng"}],"type":"journal_article","language":[{"iso":"eng"}],"isi":1,"external_id":{"isi":["000409382300004"],"arxiv":["1509.04631"]},"month":"01","ec_funded":1,"page":"683 - 738","publication":"Advances in Theoretical and Mathematical Physics","publisher":"International Press of Boston","date_created":"2018-12-11T11:46:43Z","intvolume":"        21","citation":{"ama":"Nam P, Napiórkowski MM. Bogoliubov correction to the mean-field dynamics of interacting bosons. <i>Advances in Theoretical and Mathematical Physics</i>. 2017;21(3):683-738. doi:<a href=\"https://doi.org/10.4310/ATMP.2017.v21.n3.a4\">10.4310/ATMP.2017.v21.n3.a4</a>","ieee":"P. Nam and M. M. Napiórkowski, “Bogoliubov correction to the mean-field dynamics of interacting bosons,” <i>Advances in Theoretical and Mathematical Physics</i>, vol. 21, no. 3. International Press of Boston, pp. 683–738, 2017.","ista":"Nam P, Napiórkowski MM. 2017. Bogoliubov correction to the mean-field dynamics of interacting bosons. Advances in Theoretical and Mathematical Physics. 21(3), 683–738.","apa":"Nam, P., &#38; Napiórkowski, M. M. (2017). Bogoliubov correction to the mean-field dynamics of interacting bosons. <i>Advances in Theoretical and Mathematical Physics</i>. International Press of Boston. <a href=\"https://doi.org/10.4310/ATMP.2017.v21.n3.a4\">https://doi.org/10.4310/ATMP.2017.v21.n3.a4</a>","chicago":"Nam, Phan, and Marcin M Napiórkowski. “Bogoliubov Correction to the Mean-Field Dynamics of Interacting Bosons.” <i>Advances in Theoretical and Mathematical Physics</i>. International Press of Boston, 2017. <a href=\"https://doi.org/10.4310/ATMP.2017.v21.n3.a4\">https://doi.org/10.4310/ATMP.2017.v21.n3.a4</a>.","short":"P. Nam, M.M. Napiórkowski, Advances in Theoretical and Mathematical Physics 21 (2017) 683–738.","mla":"Nam, Phan, and Marcin M. Napiórkowski. “Bogoliubov Correction to the Mean-Field Dynamics of Interacting Bosons.” <i>Advances in Theoretical and Mathematical Physics</i>, vol. 21, no. 3, International Press of Boston, 2017, pp. 683–738, doi:<a href=\"https://doi.org/10.4310/ATMP.2017.v21.n3.a4\">10.4310/ATMP.2017.v21.n3.a4</a>."},"main_file_link":[{"url":"https://arxiv.org/abs/1509.04631","open_access":"1"}],"volume":21,"publication_identifier":{"issn":["1095-0761"]},"oa":1,"date_updated":"2026-07-06T13:34:16Z","oa_version":"Submitted Version","department":[{"_id":"RoSe"}],"title":"Bogoliubov correction to the mean-field dynamics of interacting bosons","doi":"10.4310/ATMP.2017.v21.n3.a4","project":[{"call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734"},{"_id":"25C878CE-B435-11E9-9278-68D0E5697425","grant_number":"P27533_N27","call_identifier":"FWF","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems"}],"quality_controlled":"1","day":"01","das_tickbox":"1","author":[{"first_name":"Phan","full_name":"Nam, Phan","last_name":"Nam","id":"404092F4-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Napiórkowski, Marcin M","first_name":"Marcin M","id":"4197AD04-F248-11E8-B48F-1D18A9856A87","last_name":"Napiórkowski"}],"date_published":"2017-01-01T00:00:00Z","article_processing_charge":"No","arxiv":1,"publication_status":"published","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"article_processing_charge":"No","arxiv":1,"date_published":"2017-08-25T00:00:00Z","author":[{"first_name":"Paul","full_name":"Bourgade, Paul","last_name":"Bourgade"},{"last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","first_name":"László","full_name":"Erdös, László"},{"last_name":"Yau","first_name":"Horng","full_name":"Yau, Horng"},{"full_name":"Yin, Jun","first_name":"Jun","last_name":"Yin"}],"das_tickbox":"1","day":"25","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","publication_status":"published","title":"Universality for a class of random band matrices","department":[{"_id":"LaEr"}],"quality_controlled":"1","doi":"10.4310/ATMP.2017.v21.n3.a5","project":[{"_id":"258DCDE6-B435-11E9-9278-68D0E5697425","grant_number":"338804","call_identifier":"FP7","name":"Random matrices, universality and disordered quantum systems"}],"volume":21,"publication_identifier":{"issn":["1095-0761"]},"main_file_link":[{"url":"https://arxiv.org/abs/1602.02312","open_access":"1"}],"date_created":"2018-12-11T11:46:43Z","intvolume":"        21","citation":{"ama":"Bourgade P, Erdös L, Yau H, Yin J. Universality for a class of random band matrices. <i>Advances in Theoretical and Mathematical Physics</i>. 2017;21(3):739-800. doi:<a href=\"https://doi.org/10.4310/ATMP.2017.v21.n3.a5\">10.4310/ATMP.2017.v21.n3.a5</a>","ieee":"P. Bourgade, L. Erdös, H. Yau, and J. Yin, “Universality for a class of random band matrices,” <i>Advances in Theoretical and Mathematical Physics</i>, vol. 21, no. 3. International Press of Boston, pp. 739–800, 2017.","ista":"Bourgade P, Erdös L, Yau H, Yin J. 2017. Universality for a class of random band matrices. Advances in Theoretical and Mathematical Physics. 21(3), 739–800.","chicago":"Bourgade, Paul, László Erdös, Horng Yau, and Jun Yin. “Universality for a Class of Random Band Matrices.” <i>Advances in Theoretical and Mathematical Physics</i>. International Press of Boston, 2017. <a href=\"https://doi.org/10.4310/ATMP.2017.v21.n3.a5\">https://doi.org/10.4310/ATMP.2017.v21.n3.a5</a>.","apa":"Bourgade, P., Erdös, L., Yau, H., &#38; Yin, J. (2017). Universality for a class of random band matrices. <i>Advances in Theoretical and Mathematical Physics</i>. International Press of Boston. <a href=\"https://doi.org/10.4310/ATMP.2017.v21.n3.a5\">https://doi.org/10.4310/ATMP.2017.v21.n3.a5</a>","short":"P. Bourgade, L. Erdös, H. Yau, J. Yin, Advances in Theoretical and Mathematical Physics 21 (2017) 739–800.","mla":"Bourgade, Paul, et al. “Universality for a Class of Random Band Matrices.” <i>Advances in Theoretical and Mathematical Physics</i>, vol. 21, no. 3, International Press of Boston, 2017, pp. 739–800, doi:<a href=\"https://doi.org/10.4310/ATMP.2017.v21.n3.a5\">10.4310/ATMP.2017.v21.n3.a5</a>."},"publication":"Advances in Theoretical and Mathematical Physics","publisher":"International Press of Boston","page":"739 - 800","ec_funded":1,"oa_version":"Submitted Version","date_updated":"2026-07-06T13:35:08Z","oa":1,"issue":"3","scopus_import":"1","status":"public","month":"08","external_id":{"arxiv":["1602.02312"],"isi":["000409382300005"]},"language":[{"iso":"eng"}],"isi":1,"type":"journal_article","abstract":[{"lang":"eng","text":"We prove the universality for the eigenvalue gap statistics in the bulk of the spectrum for band matrices, in the regime where the band width is comparable with the dimension of the matrix, W ~ N. All previous results concerning universality of non-Gaussian random matrices are for mean-field models. By relying on a new mean-field reduction technique, we deduce universality from quantum unique ergodicity for band matrices."}],"publist_id":"7337","_id":"483"},{"publication_status":"published","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Kolesnikov","id":"2D157DB6-F248-11E8-B48F-1D18A9856A87","first_name":"Alexander","full_name":"Kolesnikov, Alexander"},{"last_name":"Lampert","orcid":"0000-0001-8622-7887","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","first_name":"Christoph","full_name":"Lampert, Christoph"}],"das_tickbox":"1","day":"01","date_published":"2017-08-01T00:00:00Z","arxiv":1,"article_processing_charge":"No","quality_controlled":"1","project":[{"call_identifier":"FP7","name":"Lifelong Learning of Visual Scene Understanding","grant_number":"308036","_id":"2532554C-B435-11E9-9278-68D0E5697425"}],"department":[{"_id":"ChLa"}],"title":"PixelCNN models with auxiliary variables for natural image modeling","oa":1,"date_updated":"2026-07-06T13:41:23Z","oa_version":"Submitted Version","ec_funded":1,"page":"1905 - 1914","citation":{"chicago":"Kolesnikov, Alexander, and Christoph Lampert. “PixelCNN Models with Auxiliary Variables for Natural Image Modeling.” In <i>34th International Conference on Machine Learning</i>, 70:1905–14. Journal of Machine Learning Research, 2017.","apa":"Kolesnikov, A., &#38; Lampert, C. (2017). PixelCNN models with auxiliary variables for natural image modeling. In <i>34th International Conference on Machine Learning</i> (Vol. 70, pp. 1905–1914). Sydney, Australia: Journal of Machine Learning Research.","ista":"Kolesnikov A, Lampert C. 2017. PixelCNN models with auxiliary variables for natural image modeling. 34th International Conference on Machine Learning. ICML: International Conference on Machine Learning vol. 70, 1905–1914.","ieee":"A. Kolesnikov and C. Lampert, “PixelCNN models with auxiliary variables for natural image modeling,” in <i>34th International Conference on Machine Learning</i>, Sydney, Australia, 2017, vol. 70, pp. 1905–1914.","ama":"Kolesnikov A, Lampert C. PixelCNN models with auxiliary variables for natural image modeling. In: <i>34th International Conference on Machine Learning</i>. Vol 70. Journal of Machine Learning Research; 2017:1905-1914.","mla":"Kolesnikov, Alexander, and Christoph Lampert. “PixelCNN Models with Auxiliary Variables for Natural Image Modeling.” <i>34th International Conference on Machine Learning</i>, vol. 70, Journal of Machine Learning Research, 2017, pp. 1905–14.","short":"A. Kolesnikov, C. Lampert, in:, 34th International Conference on Machine Learning, Journal of Machine Learning Research, 2017, pp. 1905–1914."},"date_created":"2018-12-11T11:49:37Z","intvolume":"        70","publisher":"Journal of Machine Learning Research","publication":"34th International Conference on Machine Learning","main_file_link":[{"url":"https://arxiv.org/abs/1612.08185","open_access":"1"}],"publication_identifier":{"isbn":["978-151085514-4"]},"volume":70,"publist_id":"6398","abstract":[{"lang":"eng","text":"We study probabilistic models of natural images and extend the autoregressive family of PixelCNN models by incorporating latent variables. Subsequently, we describe two new generative image models that exploit different image transformations as latent variables: a quantized grayscale view of the image or a multi-resolution image pyramid. The proposed models tackle two known shortcomings of existing PixelCNN models: 1) their tendency to focus on low-level image details, while largely ignoring high-level image information, such as object shapes, and 2) their computationally costly procedure for image sampling. We experimentally demonstrate benefits of our LatentPixelCNN models, in particular showing that they produce much more realistically looking image samples than previous state-of-the-art probabilistic models. "}],"has_accepted_license":"1","_id":"1000","type":"conference","external_id":{"arxiv":["1612.08185"],"isi":["000683309501102"]},"language":[{"iso":"eng"}],"isi":1,"month":"08","status":"public","acknowledgement":"We thank Tim Salimans for spotting a mistake in our preliminary arXiv manuscript. This work was funded by the European Research Council under the European Unions Seventh Framework Programme (FP7/2007-2013)/ERC grant agreement no 308036.","scopus_import":"1","conference":{"name":"ICML: International Conference on Machine Learning","start_date":"2017-08-06","location":"Sydney, Australia","end_date":"2017-08-11"}},{"oa_version":"Submitted Version","oa":1,"date_updated":"2026-07-06T13:38:28Z","main_file_link":[{"url":"https://arxiv.org/abs/1507.04310","open_access":"1"}],"publication_identifier":{"issn":["1532-0073"]},"volume":19,"ec_funded":1,"page":"313 - 342","intvolume":"        19","citation":{"short":"P. Franek, M. Krcál, Homology, Homotopy and Applications 19 (2017) 313–342.","mla":"Franek, Peter, and Marek Krcál. “Persistence of Zero Sets.” <i>Homology, Homotopy and Applications</i>, vol. 19, no. 2, International Press of Boston, 2017, pp. 313–42, doi:<a href=\"https://doi.org/10.4310/HHA.2017.v19.n2.a16\">10.4310/HHA.2017.v19.n2.a16</a>.","ama":"Franek P, Krcál M. Persistence of zero sets. <i>Homology, Homotopy and Applications</i>. 2017;19(2):313-342. doi:<a href=\"https://doi.org/10.4310/HHA.2017.v19.n2.a16\">10.4310/HHA.2017.v19.n2.a16</a>","ieee":"P. Franek and M. Krcál, “Persistence of zero sets,” <i>Homology, Homotopy and Applications</i>, vol. 19, no. 2. International Press of Boston, pp. 313–342, 2017.","ista":"Franek P, Krcál M. 2017. Persistence of zero sets. Homology, Homotopy and Applications. 19(2), 313–342.","chicago":"Franek, Peter, and Marek Krcál. “Persistence of Zero Sets.” <i>Homology, Homotopy and Applications</i>. International Press of Boston, 2017. <a href=\"https://doi.org/10.4310/HHA.2017.v19.n2.a16\">https://doi.org/10.4310/HHA.2017.v19.n2.a16</a>.","apa":"Franek, P., &#38; Krcál, M. (2017). Persistence of zero sets. <i>Homology, Homotopy and Applications</i>. International Press of Boston. <a href=\"https://doi.org/10.4310/HHA.2017.v19.n2.a16\">https://doi.org/10.4310/HHA.2017.v19.n2.a16</a>"},"date_created":"2018-12-11T11:47:14Z","publisher":"International Press of Boston","publication":"Homology, Homotopy and Applications","language":[{"iso":"eng"}],"isi":1,"external_id":{"arxiv":["1507.04310"],"isi":["000440749400010"]},"month":"01","publist_id":"7246","abstract":[{"text":"We study robust properties of zero sets of continuous maps f: X → ℝn. Formally, we analyze the family Z&lt; r(f) := (g-1(0): ||g - f|| &lt; r) of all zero sets of all continuous maps g closer to f than r in the max-norm. All of these sets are outside A := (x: |f(x)| ≥ r) and we claim that Z&lt; r(f) is fully determined by A and an element of a certain cohomotopy group which (by a recent result) is computable whenever the dimension of X is at most 2n - 3. By considering all r &gt; 0 simultaneously, the pointed cohomotopy groups form a persistence module-a structure leading to persistence diagrams as in the case of persistent homology or well groups. Eventually, we get a descriptor of persistent robust properties of zero sets that has better descriptive power (Theorem A) and better computability status (Theorem B) than the established well diagrams. Moreover, if we endow every point of each zero set with gradients of the perturbation, the robust description of the zero sets by elements of cohomotopy groups is in some sense the best possible (Theorem C).","lang":"eng"}],"_id":"568","type":"journal_article","scopus_import":"1","issue":"2","status":"public","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","corr_author":"1","article_processing_charge":"No","arxiv":1,"das_tickbox":"1","author":[{"last_name":"Franek","orcid":"0000-0001-8878-8397","id":"473294AE-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","full_name":"Franek, Peter"},{"full_name":"Krcál, Marek","first_name":"Marek","id":"33E21118-F248-11E8-B48F-1D18A9856A87","last_name":"Krcál"}],"day":"01","date_published":"2017-01-01T00:00:00Z","quality_controlled":"1","doi":"10.4310/HHA.2017.v19.n2.a16","project":[{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"},{"_id":"2590DB08-B435-11E9-9278-68D0E5697425","grant_number":"701309","call_identifier":"H2020","name":"Atomic Resolution Structures of Mitochondrial Respiratory Chain Supercomplexes"}],"department":[{"_id":"UlWa"},{"_id":"HeEd"}],"title":"Persistence of zero sets"},{"page":"1-44","publisher":"International Press of Boston","publication":"The Electronic Journal of Combinatorics","ddc":["500"],"citation":{"mla":"Kynčl, Jan, and Zuzana Patakova. “On the Nonexistence of k Reptile Simplices in ℝ^3 and ℝ^4.” <i>The Electronic Journal of Combinatorics</i>, vol. 24, no. 3, International Press of Boston, 2017, pp. 1–44.","short":"J. Kynčl, Z. Patakova, The Electronic Journal of Combinatorics 24 (2017) 1–44.","ista":"Kynčl J, Patakova Z. 2017. On the nonexistence of k reptile simplices in ℝ^3 and ℝ^4. The Electronic Journal of Combinatorics. 24(3), 1–44.","chicago":"Kynčl, Jan, and Zuzana Patakova. “On the Nonexistence of k Reptile Simplices in ℝ^3 and ℝ^4.” <i>The Electronic Journal of Combinatorics</i>. International Press of Boston, 2017.","apa":"Kynčl, J., &#38; Patakova, Z. (2017). On the nonexistence of k reptile simplices in ℝ^3 and ℝ^4. <i>The Electronic Journal of Combinatorics</i>. International Press of Boston.","ieee":"J. Kynčl and Z. Patakova, “On the nonexistence of k reptile simplices in ℝ^3 and ℝ^4,” <i>The Electronic Journal of Combinatorics</i>, vol. 24, no. 3. International Press of Boston, pp. 1–44, 2017.","ama":"Kynčl J, Patakova Z. On the nonexistence of k reptile simplices in ℝ^3 and ℝ^4. <i>The Electronic Journal of Combinatorics</i>. 2017;24(3):1-44."},"intvolume":"        24","date_created":"2018-12-11T11:48:00Z","publication_identifier":{"issn":["1077-8926"]},"volume":24,"oa":1,"date_updated":"2026-07-06T13:38:44Z","oa_version":"Submitted Version","status":"public","file_date_updated":"2020-07-14T12:47:47Z","issue":"3","_id":"701","has_accepted_license":"1","publist_id":"6996","abstract":[{"text":"A d-dimensional simplex S is called a k-reptile (or a k-reptile simplex) if it can be tiled by k simplices with disjoint interiors that are all mutually congruent and similar to S. For d = 2, triangular k-reptiles exist for all k of the form a^2, 3a^2 or a^2+b^2 and they have been completely characterized by Snover, Waiveris, and Williams. On the other hand, the only k-reptile simplices that are known for d ≥ 3, have k = m^d, where m is a positive integer. We substantially simplify the proof by Matoušek and the second author that for d = 3, k-reptile tetrahedra can exist only for k = m^3. We then prove a weaker analogue of this result for d = 4 by showing that four-dimensional k-reptile simplices can exist only for k = m^2.","lang":"eng"}],"type":"journal_article","language":[{"iso":"eng"}],"month":"07","day":"14","pubrep_id":"984","das_tickbox":"1","author":[{"full_name":"Kynčl, Jan","first_name":"Jan","last_name":"Kynčl"},{"last_name":"Patakova","orcid":"0000-0002-3975-1683","id":"48B57058-F248-11E8-B48F-1D18A9856A87","first_name":"Zuzana","full_name":"Patakova, Zuzana"}],"date_published":"2017-07-14T00:00:00Z","article_processing_charge":"No","corr_author":"1","publication_status":"published","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"UlWa"}],"title":"On the nonexistence of k reptile simplices in ℝ^3 and ℝ^4","file":[{"access_level":"open_access","file_id":"5077","file_name":"IST-2018-984-v1+1_Patakova_on_the_nonexistence_of_k-reptile_simplices_in_R_3_and_R_4_2017.pdf","creator":"system","date_updated":"2020-07-14T12:47:47Z","file_size":544042,"checksum":"a431e573e31df13bc0f66de3061006ec","content_type":"application/pdf","date_created":"2018-12-12T10:14:25Z","relation":"main_file"}],"quality_controlled":"1"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","publication_status":"published","license":"https://creativecommons.org/licenses/by/4.0/","article_processing_charge":"No","date_published":"2017-05-30T00:00:00Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"pubrep_id":"843","author":[{"last_name":"Schmidt","first_name":"Tom","full_name":"Schmidt, Tom"},{"full_name":"Barton, Nicholas H","first_name":"Nicholas H","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton"},{"last_name":"Rasic","full_name":"Rasic, Gordana","first_name":"Gordana"},{"last_name":"Turley","first_name":"Andrew","full_name":"Turley, Andrew"},{"last_name":"Montgomery","first_name":"Brian","full_name":"Montgomery, Brian"},{"full_name":"Iturbe Ormaetxe, Inaki","first_name":"Inaki","last_name":"Iturbe Ormaetxe"},{"first_name":"Peter","full_name":"Cook, Peter","last_name":"Cook"},{"full_name":"Ryan, Peter","first_name":"Peter","last_name":"Ryan"},{"last_name":"Ritchie","first_name":"Scott","full_name":"Ritchie, Scott"},{"full_name":"Hoffmann, Ary","first_name":"Ary","last_name":"Hoffmann"},{"first_name":"Scott","full_name":"O’Neill, Scott","last_name":"O’Neill"},{"last_name":"Turelli","full_name":"Turelli, Michael","first_name":"Michael"}],"day":"30","quality_controlled":"1","doi":"10.1371/journal.pbio.2001894","file":[{"creator":"system","date_updated":"2020-07-14T12:48:16Z","file_id":"4691","access_level":"open_access","file_name":"IST-2017-843-v1+1_journal.pbio.2001894.pdf","checksum":"107d290bd1159ec77b734eb2824b01c8","content_type":"application/pdf","date_created":"2018-12-12T10:08:30Z","relation":"main_file","file_size":5541206}],"title":"Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti","department":[{"_id":"NiBa"}],"oa_version":"Published Version","oa":1,"date_updated":"2026-07-06T13:53:54Z","related_material":{"record":[{"relation":"research_data","status":"public","id":"9856"},{"status":"public","relation":"research_data","id":"9858"},{"relation":"research_data","status":"public","id":"9857"}]},"publication_identifier":{"issn":["1544-9173"]},"volume":15,"date_created":"2018-12-11T11:49:22Z","intvolume":"        15","ddc":["576"],"citation":{"chicago":"Schmidt, Tom, Nicholas H Barton, Gordana Rasic, Andrew Turley, Brian Montgomery, Inaki Iturbe Ormaetxe, Peter Cook, et al. “Local Introduction and Heterogeneous Spatial Spread of Dengue-Suppressing Wolbachia through an Urban Population of Aedes Aegypti.” <i>PLoS Biology</i>. Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pbio.2001894\">https://doi.org/10.1371/journal.pbio.2001894</a>.","apa":"Schmidt, T., Barton, N. H., Rasic, G., Turley, A., Montgomery, B., Iturbe Ormaetxe, I., … Turelli, M. (2017). Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.2001894\">https://doi.org/10.1371/journal.pbio.2001894</a>","ista":"Schmidt T, Barton NH, Rasic G, Turley A, Montgomery B, Iturbe Ormaetxe I, Cook P, Ryan P, Ritchie S, Hoffmann A, O’Neill S, Turelli M. 2017. Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti. PLoS Biology. 15(5), e2001894.","ama":"Schmidt T, Barton NH, Rasic G, et al. Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti. <i>PLoS Biology</i>. 2017;15(5). doi:<a href=\"https://doi.org/10.1371/journal.pbio.2001894\">10.1371/journal.pbio.2001894</a>","ieee":"T. Schmidt <i>et al.</i>, “Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti,” <i>PLoS Biology</i>, vol. 15, no. 5. Public Library of Science, 2017.","mla":"Schmidt, Tom, et al. “Local Introduction and Heterogeneous Spatial Spread of Dengue-Suppressing Wolbachia through an Urban Population of Aedes Aegypti.” <i>PLoS Biology</i>, vol. 15, no. 5, e2001894, Public Library of Science, 2017, doi:<a href=\"https://doi.org/10.1371/journal.pbio.2001894\">10.1371/journal.pbio.2001894</a>.","short":"T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, PLoS Biology 15 (2017)."},"publication":"PLoS Biology","publisher":"Public Library of Science","month":"05","language":[{"iso":"eng"}],"isi":1,"external_id":{"isi":["000402520000012"]},"article_number":"e2001894","type":"journal_article","abstract":[{"lang":"eng","text":"Dengue-suppressing Wolbachia strains are promising tools for arbovirus control, particularly as they have the potential to self-spread following local introductions. To test this, we followed the frequency of the transinfected Wolbachia strain wMel through Ae. aegypti in Cairns, Australia, following releases at 3 nonisolated locations within the city in early 2013. Spatial spread was analysed graphically using interpolation and by fitting a statistical model describing the position and width of the wave. For the larger 2 of the 3 releases (covering 0.97 km2 and 0.52 km2), we observed slow but steady spatial spread, at about 100–200 m per year, roughly consistent with theoretical predictions. In contrast, the smallest release (0.11 km2) produced erratic temporal and spatial dynamics, with little evidence of spread after 2 years. This is consistent with the prediction concerning fitness-decreasing Wolbachia transinfections that a minimum release area is needed to achieve stable local establishment and spread in continuous habitats. Our graphical and likelihood analyses produced broadly consistent estimates of wave speed and wave width. Spread at all sites was spatially heterogeneous, suggesting that environmental heterogeneity will affect large-scale Wolbachia transformations of urban mosquito populations. The persistence and spread of Wolbachia in release areas meeting minimum area requirements indicates the promise of successful large-scale population transfo"}],"publist_id":"6464","has_accepted_license":"1","_id":"951","issue":"5","scopus_import":"1","file_date_updated":"2020-07-14T12:48:16Z","status":"public"},{"status":"public","title":"Supporting information concerning observed wMel frequencies and analyses of habitat variables","department":[{"_id":"NiBa"}],"type":"research_data_reference","doi":"10.1371/journal.pbio.2001894.s015","_id":"9857","month":"05","publisher":"Public Library of Science","date_published":"2017-05-30T00:00:00Z","citation":{"short":"T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).","mla":"Schmidt, Tom, et al. <i>Supporting Information Concerning Observed WMel Frequencies and Analyses of Habitat Variables</i>. Public Library of Science, 2017, doi:<a href=\"https://doi.org/10.1371/journal.pbio.2001894.s015\">10.1371/journal.pbio.2001894.s015</a>.","ieee":"T. Schmidt <i>et al.</i>, “Supporting information concerning observed wMel frequencies and analyses of habitat variables.” Public Library of Science, 2017.","ama":"Schmidt T, Barton NH, Rasic G, et al. Supporting information concerning observed wMel frequencies and analyses of habitat variables. 2017. doi:<a href=\"https://doi.org/10.1371/journal.pbio.2001894.s015\">10.1371/journal.pbio.2001894.s015</a>","ista":"Schmidt T, Barton NH, Rasic G, Turley A, Montgomery B, Iturbe Ormaetxe I, Cook P, Ryan P, Ritchie S, Hoffmann A, O’Neill S, Turelli M. 2017. Supporting information concerning observed wMel frequencies and analyses of habitat variables, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pbio.2001894.s015\">10.1371/journal.pbio.2001894.s015</a>.","chicago":"Schmidt, Tom, Nicholas H Barton, Gordana Rasic, Andrew Turley, Brian Montgomery, Inaki Iturbe Ormaetxe, Peter Cook, et al. “Supporting Information Concerning Observed WMel Frequencies and Analyses of Habitat Variables.” Public Library of Science, 2017. <a href=\"https://doi.org/10.1371/journal.pbio.2001894.s015\">https://doi.org/10.1371/journal.pbio.2001894.s015</a>.","apa":"Schmidt, T., Barton, N. H., Rasic, G., Turley, A., Montgomery, B., Iturbe Ormaetxe, I., … Turelli, M. (2017). Supporting information concerning observed wMel frequencies and analyses of habitat variables. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.2001894.s015\">https://doi.org/10.1371/journal.pbio.2001894.s015</a>"},"date_created":"2021-08-10T07:41:52Z","day":"30","author":[{"full_name":"Schmidt, Tom","first_name":"Tom","last_name":"Schmidt"},{"orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","full_name":"Barton, Nicholas H","first_name":"Nicholas H"},{"last_name":"Rasic","first_name":"Gordana","full_name":"Rasic, Gordana"},{"first_name":"Andrew","full_name":"Turley, Andrew","last_name":"Turley"},{"last_name":"Montgomery","first_name":"Brian","full_name":"Montgomery, Brian"},{"first_name":"Inaki","full_name":"Iturbe Ormaetxe, Inaki","last_name":"Iturbe Ormaetxe"},{"first_name":"Peter","full_name":"Cook, Peter","last_name":"Cook"},{"last_name":"Ryan","first_name":"Peter","full_name":"Ryan, Peter"},{"last_name":"Ritchie","first_name":"Scott","full_name":"Ritchie, Scott"},{"full_name":"Hoffmann, Ary","first_name":"Ary","last_name":"Hoffmann"},{"last_name":"O’Neill","full_name":"O’Neill, Scott","first_name":"Scott"},{"first_name":"Michael","full_name":"Turelli, Michael","last_name":"Turelli"}],"article_processing_charge":"No","related_material":{"record":[{"id":"951","status":"public","relation":"used_in_publication"}]},"date_updated":"2026-07-06T13:53:55Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","year":"2017"},{"title":"Molecular impurities interacting with a many-particle environment: From ultracold gases to helium nanodroplets","department":[{"_id":"MiLe"}],"doi":"10.1039/9781782626800-00444","quality_controlled":"1","editor":[{"last_name":"Dulieu","full_name":"Dulieu, Oliver","first_name":"Oliver"},{"last_name":"Osterwalder","full_name":"Osterwalder, Andreas","first_name":"Andreas"}],"date_published":"2017-12-14T00:00:00Z","day":"14","author":[{"orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko","full_name":"Lemeshko, Mikhail","first_name":"Mikhail"},{"full_name":"Schmidt, Richard","first_name":"Richard","last_name":"Schmidt"}],"das_tickbox":"1","arxiv":1,"article_processing_charge":"No","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","status":"public","scopus_import":"1","type":"book_chapter","_id":"604","publist_id":"7201","abstract":[{"text":"In several settings of physics and chemistry one has to deal with molecules interacting with some kind of an external environment, be it a gas, a solution, or a crystal surface. Understanding molecular processes in the presence of such a many-particle bath is inherently challenging, and usually requires large-scale numerical computations. Here, we present an alternative approach to the problem, based on the notion of the angulon quasiparticle. We show that molecules rotating inside superfluid helium nanodroplets and Bose–Einstein condensates form angulons, and therefore can be described by straightforward solutions of a simple microscopic Hamiltonian. Casting the problem in the language of angulons allows us not only to greatly simplify it, but also to gain insights into the origins of the observed phenomena and to make predictions for future experimental studies.","lang":"eng"}],"month":"12","series_title":"Theoretical and Computational Chemistry Series","language":[{"iso":"eng"}],"external_id":{"arxiv":["1703.06753"]},"publisher":"Royal Society of Chemistry","publication":"Cold Chemistry: Molecular Scattering and Reactivity Near Absolute Zero ","date_created":"2018-12-11T11:47:27Z","intvolume":"        11","citation":{"ieee":"M. Lemeshko and R. Schmidt, “Molecular impurities interacting with a many-particle environment: From ultracold gases to helium nanodroplets,” in <i>Cold Chemistry: Molecular Scattering and Reactivity Near Absolute Zero </i>, vol. 11, O. Dulieu and A. Osterwalder, Eds. Royal Society of Chemistry, 2017, pp. 444–495.","ama":"Lemeshko M, Schmidt R. Molecular impurities interacting with a many-particle environment: From ultracold gases to helium nanodroplets. In: Dulieu O, Osterwalder A, eds. <i>Cold Chemistry: Molecular Scattering and Reactivity Near Absolute Zero </i>. Vol 11. Theoretical and Computational Chemistry Series. Royal Society of Chemistry; 2017:444-495. doi:<a href=\"https://doi.org/10.1039/9781782626800-00444\">10.1039/9781782626800-00444</a>","ista":"Lemeshko M, Schmidt R. 2017.Molecular impurities interacting with a many-particle environment: From ultracold gases to helium nanodroplets. In: Cold Chemistry: Molecular Scattering and Reactivity Near Absolute Zero . Theoretical and Computational Chemistry Series, vol. 11, 444–495.","chicago":"Lemeshko, Mikhail, and Richard Schmidt. “Molecular Impurities Interacting with a Many-Particle Environment: From Ultracold Gases to Helium Nanodroplets.” In <i>Cold Chemistry: Molecular Scattering and Reactivity Near Absolute Zero </i>, edited by Oliver Dulieu and Andreas Osterwalder, 11:444–95. Theoretical and Computational Chemistry Series. Royal Society of Chemistry, 2017. <a href=\"https://doi.org/10.1039/9781782626800-00444\">https://doi.org/10.1039/9781782626800-00444</a>.","apa":"Lemeshko, M., &#38; Schmidt, R. (2017). Molecular impurities interacting with a many-particle environment: From ultracold gases to helium nanodroplets. In O. Dulieu &#38; A. Osterwalder (Eds.), <i>Cold Chemistry: Molecular Scattering and Reactivity Near Absolute Zero </i> (Vol. 11, pp. 444–495). Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/9781782626800-00444\">https://doi.org/10.1039/9781782626800-00444</a>","short":"M. Lemeshko, R. Schmidt, in:, O. Dulieu, A. Osterwalder (Eds.), Cold Chemistry: Molecular Scattering and Reactivity Near Absolute Zero , Royal Society of Chemistry, 2017, pp. 444–495.","mla":"Lemeshko, Mikhail, and Richard Schmidt. “Molecular Impurities Interacting with a Many-Particle Environment: From Ultracold Gases to Helium Nanodroplets.” <i>Cold Chemistry: Molecular Scattering and Reactivity Near Absolute Zero </i>, edited by Oliver Dulieu and Andreas Osterwalder, vol. 11, Royal Society of Chemistry, 2017, pp. 444–95, doi:<a href=\"https://doi.org/10.1039/9781782626800-00444\">10.1039/9781782626800-00444</a>."},"page":"444 - 495","publication_identifier":{"issn":["2041-3181"]},"volume":11,"main_file_link":[{"url":"https://arxiv.org/abs/1703.06753","open_access":"1"}],"oa":1,"date_updated":"2026-07-07T05:50:51Z","alternative_title":["Theoretical and Computational Chemistry Series"],"oa_version":"Submitted Version"},{"publication_identifier":{"issn":["1022-2588"]},"volume":70,"ddc":["020"],"intvolume":"        70","date_created":"2018-12-11T11:48:36Z","citation":{"short":"M. Andrae, M. Villányi, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare 70 (2017) 274–280.","mla":"Andrae, Magdalena, and Márton Villányi. “Der Springer Compact-Deal – Ein Erster Einblick in Die Evaluierung Einer Offsetting-Vereinbarung.” <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>, vol. 70, no. 2, Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2017, pp. 274–80, doi:<a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">10.31263/voebm.v70i2.1898</a>.","ama":"Andrae M, Villányi M. Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung. <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>. 2017;70(2):274-280. doi:<a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">10.31263/voebm.v70i2.1898</a>","ieee":"M. Andrae and M. Villányi, “Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung,” <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>, vol. 70, no. 2. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, pp. 274–280, 2017.","apa":"Andrae, M., &#38; Villányi, M. (2017). Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung. <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. <a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">https://doi.org/10.31263/voebm.v70i2.1898</a>","chicago":"Andrae, Magdalena, and Márton Villányi. “Der Springer Compact-Deal – Ein Erster Einblick in Die Evaluierung Einer Offsetting-Vereinbarung.” <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2017. <a href=\"https://doi.org/10.31263/voebm.v70i2.1898\">https://doi.org/10.31263/voebm.v70i2.1898</a>.","ista":"Andrae M, Villányi M. 2017. Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung. Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. 70(2), 274–280."},"publisher":"Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare","publication":"Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare","page":"274 - 280","oa_version":"Published Version","date_updated":"2026-07-07T06:08:32Z","oa":1,"issue":"2","file_date_updated":"2020-07-14T12:48:09Z","scopus_import":"1","status":"public","month":"08","language":[{"iso":"eng"}],"type":"journal_article","abstract":[{"text":"On January the 1st, 2016 a new agreement between 32 Austrian scientific libraries and the publisher Springer took its effect: this deal covers accessing the licensed content on the one hand, and publishing open access on the other hand. More than 1000 papers by Austrian authors were published open access at Springer in the first year alone. The working group &quot;Springer Compact Evaluierung&quot; made the data for these articles available via the platform OpenAPC and would like to use this opportunity to give a short account of what this publishing agreement actually entails and the working group intends to do.","lang":"eng"}],"publist_id":"6843","has_accepted_license":"1","_id":"807","article_processing_charge":"No","date_published":"2017-08-01T00:00:00Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"das_tickbox":"1","author":[{"last_name":"Andrae","full_name":"Andrae, Magdalena","first_name":"Magdalena"},{"first_name":"Márton","full_name":"Villányi, Márton","last_name":"Villányi","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8126-0426"}],"day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","publication_status":"published","file":[{"content_type":"application/pdf","checksum":"558c18bcf5580d87dd371ec626d52075","relation":"main_file","date_created":"2019-01-18T13:39:26Z","file_size":125065,"creator":"dernst","date_updated":"2020-07-14T12:48:09Z","file_name":"2017_VOEB_Andrae.pdf","access_level":"open_access","file_id":"5851"}],"title":"Der Springer Compact-Deal – Ein erster Einblick in die Evaluierung einer Offsetting-Vereinbarung","department":[{"_id":"E-Lib"}],"popular_science":"1","doi":"10.31263/voebm.v70i2.1898"},{"file_date_updated":"2020-07-14T12:48:11Z","scopus_import":"1","issue":"2","status":"public","language":[{"iso":"eng"}],"month":"08","has_accepted_license":"1","_id":"825","publist_id":"6823","abstract":[{"lang":"eng","text":"What data is needed about data? Describing the process to answer this question for the institutional data repository IST DataRep."}],"type":"journal_article","publication_identifier":{"issn":["1022-2588"]},"volume":70,"page":"200 - 207","publication":"Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen & Bibliothekare","publisher":"Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare","citation":{"ista":"Petritsch B. 2017. Metadata for research data in practice. Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare. 70(2), 200–207.","apa":"Petritsch, B. (2017). Metadata for research data in practice. <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. <a href=\"https://doi.org/10.31263/voebm.v70i2.1678\">https://doi.org/10.31263/voebm.v70i2.1678</a>","chicago":"Petritsch, Barbara. “Metadata for Research Data in Practice.” <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2017. <a href=\"https://doi.org/10.31263/voebm.v70i2.1678\">https://doi.org/10.31263/voebm.v70i2.1678</a>.","ieee":"B. Petritsch, “Metadata for research data in practice,” <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>, vol. 70, no. 2. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, pp. 200–207, 2017.","ama":"Petritsch B. Metadata for research data in practice. <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>. 2017;70(2):200-207. doi:<a href=\"https://doi.org/10.31263/voebm.v70i2.1678\">10.31263/voebm.v70i2.1678</a>","mla":"Petritsch, Barbara. “Metadata for Research Data in Practice.” <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare</i>, vol. 70, no. 2, Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2017, pp. 200–07, doi:<a href=\"https://doi.org/10.31263/voebm.v70i2.1678\">10.31263/voebm.v70i2.1678</a>.","short":"B. Petritsch, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen &#38; Bibliothekare 70 (2017) 200–207."},"ddc":["020"],"date_created":"2018-12-11T11:48:42Z","intvolume":"        70","oa_version":"Published Version","date_updated":"2026-07-07T06:11:18Z","oa":1,"file":[{"file_size":7843975,"content_type":"application/pdf","checksum":"7c4544d07efa2c2add8612b489abb4e2","relation":"main_file","date_created":"2019-01-18T13:32:17Z","file_name":"2017_VOEB_Petritsch.pdf","access_level":"open_access","file_id":"5850","creator":"dernst","date_updated":"2020-07-14T12:48:11Z"}],"department":[{"_id":"E-Lib"}],"title":"Metadata for research data in practice","doi":"10.31263/voebm.v70i2.1678","article_processing_charge":"No","corr_author":"1","day":"01","author":[{"first_name":"Barbara","full_name":"Petritsch, Barbara","last_name":"Petritsch","id":"406048EC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2724-4614"}],"das_tickbox":"1","date_published":"2017-08-01T00:00:00Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published"},{"title":"Phase transitions in integer linear problems","department":[{"_id":"GaTk"}],"quality_controlled":"1","doi":"10.1088/1742-5468/aa85c3","project":[{"name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734"}],"date_published":"2017-09-26T00:00:00Z","das_tickbox":"1","author":[{"last_name":"Colabrese","full_name":"Colabrese, Simona","first_name":"Simona"},{"full_name":"De Martino, Daniele","first_name":"Daniele","id":"3FF5848A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5214-4706","last_name":"De Martino"},{"last_name":"Leuzzi","full_name":"Leuzzi, Luca","first_name":"Luca"},{"last_name":"Marinari","full_name":"Marinari, Enzo","first_name":"Enzo"}],"day":"26","arxiv":1,"article_processing_charge":"No","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","status":"public","issue":"9","scopus_import":"1","type":"journal_article","publist_id":"6826","abstract":[{"lang":"eng","text":"The resolution of a linear system with positive integer variables is a basic yet difficult computational problem with many applications. We consider sparse uncorrelated random systems parametrised by the density c and the ratio α=N/M between number of variables N and number of constraints M. By means of ensemble calculations we show that the space of feasible solutions endows a Van-Der-Waals phase diagram in the plane (c, α). We give numerical evidence that the associated computational problems become more difficult across the critical point and in particular in the coexistence region."}],"_id":"823","month":"09","isi":1,"external_id":{"isi":["000411842900001"],"arxiv":["1705.06303"]},"language":[{"iso":"eng"}],"article_number":"093404","intvolume":"      2017","date_created":"2018-12-11T11:48:41Z","citation":{"ista":"Colabrese S, De Martino D, Leuzzi L, Marinari E. 2017. Phase transitions in integer linear problems. Journal of Statistical Mechanics: Theory and Experiment. 2017(9), 093404.","apa":"Colabrese, S., De Martino, D., Leuzzi, L., &#38; Marinari, E. (2017). Phase transitions in integer linear problems. <i>Journal of Statistical Mechanics: Theory and Experiment</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1742-5468/aa85c3\">https://doi.org/10.1088/1742-5468/aa85c3</a>","chicago":"Colabrese, Simona, Daniele De Martino, Luca Leuzzi, and Enzo Marinari. “Phase Transitions in Integer Linear Problems.” <i>Journal of Statistical Mechanics: Theory and Experiment</i>. IOP Publishing, 2017. <a href=\"https://doi.org/10.1088/1742-5468/aa85c3\">https://doi.org/10.1088/1742-5468/aa85c3</a>.","ama":"Colabrese S, De Martino D, Leuzzi L, Marinari E. Phase transitions in integer linear problems. <i>Journal of Statistical Mechanics: Theory and Experiment</i>. 2017;2017(9). doi:<a href=\"https://doi.org/10.1088/1742-5468/aa85c3\">10.1088/1742-5468/aa85c3</a>","ieee":"S. Colabrese, D. De Martino, L. Leuzzi, and E. Marinari, “Phase transitions in integer linear problems,” <i>Journal of Statistical Mechanics: Theory and Experiment</i>, vol. 2017, no. 9. IOP Publishing, 2017.","mla":"Colabrese, Simona, et al. “Phase Transitions in Integer Linear Problems.” <i>Journal of Statistical Mechanics: Theory and Experiment</i>, vol. 2017, no. 9, 093404, IOP Publishing, 2017, doi:<a href=\"https://doi.org/10.1088/1742-5468/aa85c3\">10.1088/1742-5468/aa85c3</a>.","short":"S. Colabrese, D. De Martino, L. Leuzzi, E. Marinari, Journal of Statistical Mechanics: Theory and Experiment 2017 (2017)."},"publication":"Journal of Statistical Mechanics: Theory and Experiment","publisher":"IOP Publishing","ec_funded":1,"volume":2017,"publication_identifier":{"issn":["1742-5468"]},"main_file_link":[{"url":"https://arxiv.org/abs/1705.06303","open_access":"1"}],"oa":1,"date_updated":"2026-07-07T13:11:04Z","oa_version":"Submitted Version"},{"quality_controlled":"1","project":[{"_id":"25C6DC12-B435-11E9-9278-68D0E5697425","grant_number":"694227","name":"Analysis of quantum many-body systems","call_identifier":"H2020"}],"doi":"10.1063/1.4996580","title":"A lower bound for the BCS functional with boundary conditions at infinity","department":[{"_id":"RoSe"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","publication_status":"published","corr_author":"1","arxiv":1,"article_processing_charge":"No","date_published":"2017-08-01T00:00:00Z","author":[{"id":"4DA65CD0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-3146-6746","last_name":"Deuchert","full_name":"Deuchert, Andreas","first_name":"Andreas"}],"das_tickbox":"1","day":"01","month":"08","language":[{"iso":"eng"}],"external_id":{"isi":["000409197200015"],"arxiv":["1703.04616"]},"isi":1,"article_number":"081901","type":"journal_article","publist_id":"6531","abstract":[{"text":"We consider a many-body system of fermionic atoms interacting via a local pair potential and subject to an external potential within the framework of Bardeen-Cooper-Schrieffer (BCS) theory. We measure the free energy of the whole sample with respect to the free energy of a reference state which allows us to define a BCS functional with boundary conditions at infinity. Our main result is a lower bound for this energy functional in terms of expressions that typically appear in Ginzburg-Landau functionals.\r\n","lang":"eng"}],"_id":"912","issue":"8","scopus_import":"1","status":"public","oa_version":"Submitted Version","date_updated":"2026-07-07T13:10:46Z","oa":1,"volume":58,"publication_identifier":{"issn":["0022-2488"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1703.04616"}],"date_created":"2018-12-11T11:49:10Z","intvolume":"        58","citation":{"ama":"Deuchert A. A lower bound for the BCS functional with boundary conditions at infinity. <i>Journal of Mathematical Physics</i>. 2017;58(8). doi:<a href=\"https://doi.org/10.1063/1.4996580\">10.1063/1.4996580</a>","ieee":"A. Deuchert, “A lower bound for the BCS functional with boundary conditions at infinity,” <i>Journal of Mathematical Physics</i>, vol. 58, no. 8. AIP Publishing, 2017.","apa":"Deuchert, A. (2017). A lower bound for the BCS functional with boundary conditions at infinity. <i>Journal of Mathematical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.4996580\">https://doi.org/10.1063/1.4996580</a>","chicago":"Deuchert, Andreas. “A Lower Bound for the BCS Functional with Boundary Conditions at Infinity.” <i>Journal of Mathematical Physics</i>. AIP Publishing, 2017. <a href=\"https://doi.org/10.1063/1.4996580\">https://doi.org/10.1063/1.4996580</a>.","ista":"Deuchert A. 2017. A lower bound for the BCS functional with boundary conditions at infinity. Journal of Mathematical Physics. 58(8), 081901.","short":"A. Deuchert, Journal of Mathematical Physics 58 (2017).","mla":"Deuchert, Andreas. “A Lower Bound for the BCS Functional with Boundary Conditions at Infinity.” <i>Journal of Mathematical Physics</i>, vol. 58, no. 8, 081901, AIP Publishing, 2017, doi:<a href=\"https://doi.org/10.1063/1.4996580\">10.1063/1.4996580</a>."},"publication":"Journal of Mathematical Physics","publisher":"AIP Publishing","ec_funded":1},{"oa_version":"Submitted Version","date_updated":"2026-07-07T13:11:54Z","oa":1,"publication_identifier":{"issn":["0022-5193"]},"volume":433,"article_type":"original","publisher":"Elsevier","publication":"Journal of Theoretical Biology","intvolume":"       433","citation":{"ista":"Priklopil T, Chatterjee K, Nowak M. 2017. Optional interactions and suspicious behaviour facilitates trustful cooperation in prisoners dilemma. Journal of Theoretical Biology. 433, 64–72.","chicago":"Priklopil, Tadeas, Krishnendu Chatterjee, and Martin Nowak. “Optional Interactions and Suspicious Behaviour Facilitates Trustful Cooperation in Prisoners Dilemma.” <i>Journal of Theoretical Biology</i>. Elsevier, 2017. <a href=\"https://doi.org/10.1016/j.jtbi.2017.08.025\">https://doi.org/10.1016/j.jtbi.2017.08.025</a>.","apa":"Priklopil, T., Chatterjee, K., &#38; Nowak, M. (2017). Optional interactions and suspicious behaviour facilitates trustful cooperation in prisoners dilemma. <i>Journal of Theoretical Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jtbi.2017.08.025\">https://doi.org/10.1016/j.jtbi.2017.08.025</a>","ama":"Priklopil T, Chatterjee K, Nowak M. Optional interactions and suspicious behaviour facilitates trustful cooperation in prisoners dilemma. <i>Journal of Theoretical Biology</i>. 2017;433:64-72. doi:<a href=\"https://doi.org/10.1016/j.jtbi.2017.08.025\">10.1016/j.jtbi.2017.08.025</a>","ieee":"T. Priklopil, K. Chatterjee, and M. Nowak, “Optional interactions and suspicious behaviour facilitates trustful cooperation in prisoners dilemma,” <i>Journal of Theoretical Biology</i>, vol. 433. Elsevier, pp. 64–72, 2017.","mla":"Priklopil, Tadeas, et al. “Optional Interactions and Suspicious Behaviour Facilitates Trustful Cooperation in Prisoners Dilemma.” <i>Journal of Theoretical Biology</i>, vol. 433, Elsevier, 2017, pp. 64–72, doi:<a href=\"https://doi.org/10.1016/j.jtbi.2017.08.025\">10.1016/j.jtbi.2017.08.025</a>.","short":"T. Priklopil, K. Chatterjee, M. Nowak, Journal of Theoretical Biology 433 (2017) 64–72."},"date_created":"2018-12-11T11:48:16Z","ddc":["000","570"],"page":"64 - 72","ec_funded":1,"month":"11","language":[{"iso":"eng"}],"external_id":{"pmid":["28867224"],"isi":["000412039800007"]},"isi":1,"type":"journal_article","_id":"744","has_accepted_license":"1","publist_id":"6923","abstract":[{"lang":"eng","text":"In evolutionary game theory interactions between individuals are often assumed obligatory. However, in many real-life situations, individuals can decide to opt out of an interaction depending on the information they have about the opponent. We consider a simple evolutionary game theoretic model to study such a scenario, where at each encounter between two individuals the type of the opponent (cooperator/defector) is known with some probability, and where each individual either accepts or opts out of the interaction. If the type of the opponent is unknown, a trustful individual accepts the interaction, whereas a suspicious individual opts out of the interaction. If either of the two individuals opt out both individuals remain without an interaction. We show that in the prisoners dilemma optional interactions along with suspicious behaviour facilitates the emergence of trustful cooperation."}],"file_date_updated":"2020-07-14T12:47:58Z","scopus_import":"1","pmid":1,"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","publication_status":"published","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","article_processing_charge":"No","corr_author":"1","tmp":{"image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)"},"date_published":"2017-11-21T00:00:00Z","day":"21","author":[{"last_name":"Priklopil","id":"3C869AA0-F248-11E8-B48F-1D18A9856A87","first_name":"Tadeas","full_name":"Priklopil, Tadeas"},{"full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","last_name":"Chatterjee"},{"last_name":"Nowak","first_name":"Martin","full_name":"Nowak, Martin"}],"das_tickbox":"1","doi":"10.1016/j.jtbi.2017.08.025","project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"},{"call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications","_id":"2581B60A-B435-11E9-9278-68D0E5697425","grant_number":"279307"}],"quality_controlled":"1","file":[{"date_updated":"2020-07-14T12:47:58Z","creator":"dernst","file_name":"2017_JournTheoretBio_Priklopil.pdf","access_level":"open_access","file_id":"7047","relation":"main_file","date_created":"2019-11-19T07:57:39Z","content_type":"application/pdf","checksum":"4b43af1615ebf1a861840cb03d8a320c","file_size":537323}],"title":"Optional interactions and suspicious behaviour facilitates trustful cooperation in prisoners dilemma","department":[{"_id":"KrCh"}]},{"volume":96,"publication_identifier":{"issn":["2470-0045"]},"main_file_link":[{"url":"https://arxiv.org/abs/1703.00219","open_access":"1"}],"publication":"Physical Review E","publisher":"American Institute of Physics","date_created":"2018-12-11T11:49:21Z","intvolume":"        96","citation":{"apa":"De Martino, D., Capuani, F., &#38; De Martino, A. (2017). Quantifying the entropic cost of cellular growth control. <i>Physical Review E</i>. American Institute of Physics. <a href=\"https://doi.org/10.1103/PhysRevE.96.010401\">https://doi.org/10.1103/PhysRevE.96.010401</a>","chicago":"De Martino, Daniele, Fabrizio Capuani, and Andrea De Martino. “Quantifying the Entropic Cost of Cellular Growth Control.” <i>Physical Review E</i>. American Institute of Physics, 2017. <a href=\"https://doi.org/10.1103/PhysRevE.96.010401\">https://doi.org/10.1103/PhysRevE.96.010401</a>.","ista":"De Martino D, Capuani F, De Martino A. 2017. Quantifying the entropic cost of cellular growth control. Physical Review E. 96(1), 010401.","ama":"De Martino D, Capuani F, De Martino A. Quantifying the entropic cost of cellular growth control. <i>Physical Review E</i>. 2017;96(1). doi:<a href=\"https://doi.org/10.1103/PhysRevE.96.010401\">10.1103/PhysRevE.96.010401</a>","ieee":"D. De Martino, F. Capuani, and A. De Martino, “Quantifying the entropic cost of cellular growth control,” <i>Physical Review E</i>, vol. 96, no. 1. American Institute of Physics, 2017.","mla":"De Martino, Daniele, et al. “Quantifying the Entropic Cost of Cellular Growth Control.” <i>Physical Review E</i>, vol. 96, no. 1, 010401, American Institute of Physics, 2017, doi:<a href=\"https://doi.org/10.1103/PhysRevE.96.010401\">10.1103/PhysRevE.96.010401</a>.","short":"D. De Martino, F. Capuani, A. De Martino, Physical Review E 96 (2017)."},"ec_funded":1,"oa_version":"Submitted Version","oa":1,"date_updated":"2026-07-07T13:17:59Z","issue":"1","scopus_import":"1","status":"public","month":"07","article_number":"010401","external_id":{"arxiv":["1703.00219"],"isi":["000405194200002"]},"isi":1,"language":[{"iso":"eng"}],"type":"journal_article","_id":"947","abstract":[{"lang":"eng","text":"Viewing the ways a living cell can organize its metabolism as the phase space of a physical system, regulation can be seen as the ability to reduce the entropy of that space by selecting specific cellular configurations that are, in some sense, optimal. Here we quantify the amount of regulation required to control a cell's growth rate by a maximum-entropy approach to the space of underlying metabolic phenotypes, where a configuration corresponds to a metabolic flux pattern as described by genome-scale models. We link the mean growth rate achieved by a population of cells to the minimal amount of metabolic regulation needed to achieve it through a phase diagram that highlights how growth suppression can be as costly (in regulatory terms) as growth enhancement. Moreover, we provide an interpretation of the inverse temperature β controlling maximum-entropy distributions based on the underlying growth dynamics. Specifically, we show that the asymptotic value of β for a cell population can be expected to depend on (i) the carrying capacity of the environment, (ii) the initial size of the colony, and (iii) the probability distribution from which the inoculum was sampled. Results obtained for E. coli and human cells are found to be remarkably consistent with empirical evidence."}],"publist_id":"6470","arxiv":1,"article_processing_charge":"No","date_published":"2017-07-10T00:00:00Z","day":"10","das_tickbox":"1","author":[{"orcid":"0000-0002-5214-4706","id":"3FF5848A-F248-11E8-B48F-1D18A9856A87","last_name":"De Martino","full_name":"De Martino, Daniele","first_name":"Daniele"},{"last_name":"Capuani","first_name":"Fabrizio","full_name":"Capuani, Fabrizio"},{"last_name":"De Martino","full_name":"De Martino, Andrea","first_name":"Andrea"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","publication_status":"published","title":"Quantifying the entropic cost of cellular growth control","department":[{"_id":"GaTk"}],"doi":"10.1103/PhysRevE.96.010401","project":[{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"}],"quality_controlled":"1"},{"oa":1,"date_updated":"2026-07-07T13:17:34Z","oa_version":"Submitted Version","ec_funded":1,"intvolume":"        95","date_created":"2018-12-11T11:50:01Z","citation":{"short":"M. Klaiber, J. Daněk, E. Yakaboylu, K. Hatsagortsyan, C. Keitel, Physical Review A 95 (2017).","mla":"Klaiber, Michael, et al. “Strong-Field Ionization via a High-Order Coulomb-Corrected Strong-Field Approximation.” <i>Physical Review A</i>, vol. 95, no. 2, 023403, American Physical Society, 2017, doi:<a href=\"https://doi.org/10.1103/PhysRevA.95.023403\">10.1103/PhysRevA.95.023403</a>.","ama":"Klaiber M, Daněk J, Yakaboylu E, Hatsagortsyan K, Keitel C. Strong-field ionization via a high-order Coulomb-corrected strong-field approximation. <i>Physical Review A</i>. 2017;95(2). doi:<a href=\"https://doi.org/10.1103/PhysRevA.95.023403\">10.1103/PhysRevA.95.023403</a>","ieee":"M. Klaiber, J. Daněk, E. Yakaboylu, K. Hatsagortsyan, and C. Keitel, “Strong-field ionization via a high-order Coulomb-corrected strong-field approximation,” <i>Physical Review A</i>, vol. 95, no. 2. American Physical Society, 2017.","chicago":"Klaiber, Michael, Jiří Daněk, Enderalp Yakaboylu, Karen Hatsagortsyan, and Christoph Keitel. “Strong-Field Ionization via a High-Order Coulomb-Corrected Strong-Field Approximation.” <i>Physical Review A</i>. American Physical Society, 2017. <a href=\"https://doi.org/10.1103/PhysRevA.95.023403\">https://doi.org/10.1103/PhysRevA.95.023403</a>.","apa":"Klaiber, M., Daněk, J., Yakaboylu, E., Hatsagortsyan, K., &#38; Keitel, C. (2017). Strong-field ionization via a high-order Coulomb-corrected strong-field approximation. <i>Physical Review A</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.95.023403\">https://doi.org/10.1103/PhysRevA.95.023403</a>","ista":"Klaiber M, Daněk J, Yakaboylu E, Hatsagortsyan K, Keitel C. 2017. Strong-field ionization via a high-order Coulomb-corrected strong-field approximation. Physical Review A. 95(2), 023403."},"publisher":"American Physical Society","publication":"Physical Review A","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1609.07018"}],"publication_identifier":{"issn":["2469-9926"]},"volume":95,"publist_id":"6305","abstract":[{"lang":"eng","text":"Signatures of the Coulomb corrections in the photoelectron momentum distribution during laser-induced ionization of atoms or ions in tunneling and multiphoton regimes are investigated analytically in the case of a one-dimensional problem. A high-order Coulomb-corrected strong-field approximation is applied, where the exact continuum state in the S matrix is approximated by the eikonal Coulomb-Volkov state including the second-order corrections to the eikonal. Although without high-order corrections our theory coincides with the known analytical R-matrix (ARM) theory, we propose a simplified procedure for the matrix element derivation. Rather than matching the eikonal Coulomb-Volkov wave function with the bound state as in the ARM theory to remove the Coulomb singularity, we calculate the matrix element via the saddle-point integration method by time as well as by coordinate, and in this way avoiding the Coulomb singularity. The momentum shift in the photoelectron momentum distribution with respect to the ARM theory due to high-order corrections is analyzed for tunneling and multiphoton regimes. The relation of the quantum corrections to the tunneling delay time is discussed."}],"_id":"1076","type":"journal_article","isi":1,"language":[{"iso":"eng"}],"external_id":{"isi":["000400571700011"],"arxiv":["1609.07018"]},"article_number":"023403","month":"02","status":"public","scopus_import":"1","issue":"2","publication_status":"published","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","das_tickbox":"1","author":[{"full_name":"Klaiber, Michael","first_name":"Michael","last_name":"Klaiber"},{"last_name":"Daněk","first_name":"Jiří","full_name":"Daněk, Jiří"},{"last_name":"Yakaboylu","id":"38CB71F6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5973-0874","first_name":"Enderalp","full_name":"Yakaboylu, Enderalp"},{"last_name":"Hatsagortsyan","first_name":"Karen","full_name":"Hatsagortsyan, Karen"},{"first_name":"Christoph","full_name":"Keitel, Christoph","last_name":"Keitel"}],"day":"01","date_published":"2017-02-01T00:00:00Z","article_processing_charge":"No","arxiv":1,"quality_controlled":"1","doi":"10.1103/PhysRevA.95.023403","project":[{"call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734"}],"department":[{"_id":"MiLe"}],"title":"Strong-field ionization via a high-order Coulomb-corrected strong-field approximation"},{"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","date_published":"2017-06-28T00:00:00Z","day":"28","das_tickbox":"1","author":[{"full_name":"De Martino, Daniele","first_name":"Daniele","id":"3FF5848A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5214-4706","last_name":"De Martino"}],"arxiv":1,"article_processing_charge":"No","project":[{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"}],"doi":"10.1103/PhysRevE.95.062419","quality_controlled":"1","title":"Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics","department":[{"_id":"GaTk"}],"date_updated":"2026-07-07T13:19:44Z","oa":1,"oa_version":"Submitted Version","publisher":"American Institute of Physics","publication":"Physical Review E","citation":{"apa":"De Martino, D. (2017). Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics. <i>Physical Review E</i>. American Institute of Physics. <a href=\"https://doi.org/10.1103/PhysRevE.95.062419\">https://doi.org/10.1103/PhysRevE.95.062419</a>","chicago":"De Martino, Daniele. “Scales and Multimodal Flux Distributions in Stationary Metabolic Network Models via Thermodynamics.” <i>Physical Review E</i>. American Institute of Physics, 2017. <a href=\"https://doi.org/10.1103/PhysRevE.95.062419\">https://doi.org/10.1103/PhysRevE.95.062419</a>.","ista":"De Martino D. 2017. Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics. Physical Review E. 95(6), 062419.","ama":"De Martino D. Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics. <i>Physical Review E</i>. 2017;95(6):062419. doi:<a href=\"https://doi.org/10.1103/PhysRevE.95.062419\">10.1103/PhysRevE.95.062419</a>","ieee":"D. De Martino, “Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics,” <i>Physical Review E</i>, vol. 95, no. 6. American Institute of Physics, p. 062419, 2017.","mla":"De Martino, Daniele. “Scales and Multimodal Flux Distributions in Stationary Metabolic Network Models via Thermodynamics.” <i>Physical Review E</i>, vol. 95, no. 6, American Institute of Physics, 2017, p. 062419, doi:<a href=\"https://doi.org/10.1103/PhysRevE.95.062419\">10.1103/PhysRevE.95.062419</a>.","short":"D. De Martino, Physical Review E 95 (2017) 062419."},"date_created":"2018-12-11T11:49:25Z","intvolume":"        95","ec_funded":1,"page":"062419","publication_identifier":{"issn":["2470-0045"]},"volume":95,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1703.00853"}],"type":"journal_article","_id":"959","publist_id":"6446","abstract":[{"lang":"eng","text":"In this work it is shown that scale-free tails in metabolic flux distributions inferred in stationary models are an artifact due to reactions involved in thermodynamically unfeasible cycles, unbounded by physical constraints and in principle able to perform work without expenditure of free energy. After implementing thermodynamic constraints by removing such loops, metabolic flux distributions scale meaningfully with the physical limiting factors, acquiring in turn a richer multimodal structure potentially leading to symmetry breaking while optimizing for objective functions."}],"month":"06","external_id":{"isi":["000404546400004"],"arxiv":["1703.00853"]},"language":[{"iso":"eng"}],"isi":1,"status":"public","issue":"6","scopus_import":"1"},{"date_created":"2019-06-06T12:53:09Z","citation":{"mla":"Skórski, Maciej. “On the Complexity of Estimating Rènyi Divergences.” <i>2017 IEEE International Symposium on Information Theory</i>, 8006529, IEEE, 2017, doi:<a href=\"https://doi.org/10.1109/isit.2017.8006529\">10.1109/isit.2017.8006529</a>.","short":"M. Skórski, in:, 2017 IEEE International Symposium on Information Theory, IEEE, 2017.","ista":"Skórski M. 2017. On the complexity of estimating Rènyi divergences. 2017 IEEE International Symposium on Information Theory. ISIT: International Symposium on Information Theory, 8006529.","apa":"Skórski, M. (2017). On the complexity of estimating Rènyi divergences. In <i>2017 IEEE International Symposium on Information Theory</i>. Aachen, Germany: IEEE. <a href=\"https://doi.org/10.1109/isit.2017.8006529\">https://doi.org/10.1109/isit.2017.8006529</a>","chicago":"Skórski, Maciej. “On the Complexity of Estimating Rènyi Divergences.” In <i>2017 IEEE International Symposium on Information Theory</i>. IEEE, 2017. <a href=\"https://doi.org/10.1109/isit.2017.8006529\">https://doi.org/10.1109/isit.2017.8006529</a>.","ama":"Skórski M. On the complexity of estimating Rènyi divergences. In: <i>2017 IEEE International Symposium on Information Theory</i>. IEEE; 2017. doi:<a href=\"https://doi.org/10.1109/isit.2017.8006529\">10.1109/isit.2017.8006529</a>","ieee":"M. Skórski, “On the complexity of estimating Rènyi divergences,” in <i>2017 IEEE International Symposium on Information Theory</i>, Aachen, Germany, 2017."},"publisher":"IEEE","publication":"2017 IEEE International Symposium on Information Theory","ec_funded":1,"publication_identifier":{"isbn":["9781509040964"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1702.01666"}],"oa":1,"date_updated":"2026-07-07T13:32:59Z","oa_version":"Preprint","status":"public","conference":{"start_date":"2017-06-25","end_date":"2017-06-30","location":"Aachen, Germany","name":"ISIT: International Symposium on Information Theory"},"scopus_import":"1","type":"conference","abstract":[{"lang":"eng","text":"This paper studies the complexity of estimating Rényi divergences of discrete distributions: p observed from samples and the baseline distribution q known a priori. Extending the results of Acharya et al. (SODA'15) on estimating Rényi entropy, we present improved estimation techniques together with upper and lower bounds on the sample complexity. We show that, contrarily to estimating Rényi entropy where a sublinear (in the alphabet size) number of samples suffices, the sample complexity is heavily dependent on events occurring unlikely in q, and is unbounded in general (no matter what an estimation technique is used). For any divergence of integer order bigger than 1, we provide upper and lower bounds on the number of samples dependent on probabilities of p and q (the lower bounds hold for non-integer orders as well). We conclude that the worst-case sample complexity is polynomial in the alphabet size if and only if the probabilities of q are non-negligible. This gives theoretical insights into heuristics used in the applied literature to handle numerical instability, which occurs for small probabilities of q. Our result shows that they should be handled with care not only because of numerical issues, but also because of a blow up in the sample complexity."}],"_id":"6526","month":"08","external_id":{"arxiv":["1702.01666"]},"language":[{"iso":"eng"}],"article_number":"8006529","date_published":"2017-08-09T00:00:00Z","author":[{"full_name":"Skórski, Maciej","first_name":"Maciej","id":"EC09FA6A-02D0-11E9-8223-86B7C91467DD","last_name":"Skórski"}],"das_tickbox":"1","day":"09","arxiv":1,"article_processing_charge":"No","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","title":"On the complexity of estimating Rènyi divergences","department":[{"_id":"KrPi"}],"quality_controlled":"1","doi":"10.1109/isit.2017.8006529","project":[{"call_identifier":"H2020","name":"Teaching Old Crypto New Tricks","grant_number":"682815","_id":"258AA5B2-B435-11E9-9278-68D0E5697425"}]},{"department":[{"_id":"JoFi"}],"title":"Optomechanical proposal for monitoring microtubule mechanical vibrations","project":[{"grant_number":"707438","_id":"258047B6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination with cavity Optomechanics"}],"doi":"10.1103/PhysRevE.96.012404","quality_controlled":"1","day":"12","das_tickbox":"1","author":[{"first_name":"Shabir","full_name":"Barzanjeh, Shabir","last_name":"Barzanjeh","id":"2D25E1F6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0415-1423"},{"first_name":"Vahid","full_name":"Salari, Vahid","last_name":"Salari"},{"first_name":"Jack","full_name":"Tuszynski, Jack","last_name":"Tuszynski"},{"last_name":"Cifra","full_name":"Cifra, Michal","first_name":"Michal"},{"first_name":"Christoph","full_name":"Simon, Christoph","last_name":"Simon"}],"date_published":"2017-07-12T00:00:00Z","arxiv":1,"article_processing_charge":"No","publication_status":"published","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","scopus_import":"1","issue":"1","_id":"700","publist_id":"6997","abstract":[{"lang":"eng","text":"Microtubules provide the mechanical force required for chromosome separation during mitosis. However, little is known about the dynamic (high-frequency) mechanical properties of microtubules. Here, we theoretically propose to control the vibrations of a doubly clamped microtubule by tip electrodes and to detect its motion via the optomechanical coupling between the vibrational modes of the microtubule and an optical cavity. In the presence of a red-detuned strong pump laser, this coupling leads to optomechanical-induced transparency of an optical probe field, which can be detected with state-of-the art technology. The center frequency and line width of the transparency peak give the resonance frequency and damping rate of the microtubule, respectively, while the height of the peak reveals information about the microtubule-cavity field coupling. Our method opens the new possibilities to gain information about the physical properties of microtubules, which will enhance our capability to design physical cancer treatment protocols as alternatives to chemotherapeutic drugs."}],"type":"journal_article","article_number":"012404","external_id":{"arxiv":["1612.07061"],"isi":["000405367200012"]},"language":[{"iso":"eng"}],"isi":1,"month":"07","ec_funded":1,"publication":"Physical Review E","publisher":"American Institute of Physics","intvolume":"        96","date_created":"2018-12-11T11:48:00Z","citation":{"ieee":"S. Barzanjeh, V. Salari, J. Tuszynski, M. Cifra, and C. Simon, “Optomechanical proposal for monitoring microtubule mechanical vibrations,” <i>Physical Review E</i>, vol. 96, no. 1. American Institute of Physics, 2017.","ama":"Barzanjeh S, Salari V, Tuszynski J, Cifra M, Simon C. Optomechanical proposal for monitoring microtubule mechanical vibrations. <i>Physical Review E</i>. 2017;96(1). doi:<a href=\"https://doi.org/10.1103/PhysRevE.96.012404\">10.1103/PhysRevE.96.012404</a>","chicago":"Barzanjeh, Shabir, Vahid Salari, Jack Tuszynski, Michal Cifra, and Christoph Simon. “Optomechanical Proposal for Monitoring Microtubule Mechanical Vibrations.” <i>Physical Review E</i>. American Institute of Physics, 2017. <a href=\"https://doi.org/10.1103/PhysRevE.96.012404\">https://doi.org/10.1103/PhysRevE.96.012404</a>.","apa":"Barzanjeh, S., Salari, V., Tuszynski, J., Cifra, M., &#38; Simon, C. (2017). Optomechanical proposal for monitoring microtubule mechanical vibrations. <i>Physical Review E</i>. American Institute of Physics. <a href=\"https://doi.org/10.1103/PhysRevE.96.012404\">https://doi.org/10.1103/PhysRevE.96.012404</a>","ista":"Barzanjeh S, Salari V, Tuszynski J, Cifra M, Simon C. 2017. Optomechanical proposal for monitoring microtubule mechanical vibrations. Physical Review E. 96(1), 012404.","short":"S. Barzanjeh, V. Salari, J. Tuszynski, M. Cifra, C. Simon, Physical Review E 96 (2017).","mla":"Barzanjeh, Shabir, et al. “Optomechanical Proposal for Monitoring Microtubule Mechanical Vibrations.” <i>Physical Review E</i>, vol. 96, no. 1, 012404, American Institute of Physics, 2017, doi:<a href=\"https://doi.org/10.1103/PhysRevE.96.012404\">10.1103/PhysRevE.96.012404</a>."},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1612.07061"}],"publication_identifier":{"issn":["2470-0045"]},"volume":96,"oa":1,"date_updated":"2026-07-07T13:21:37Z","oa_version":"Submitted Version"},{"oa":1,"date_updated":"2026-07-07T14:01:10Z","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"5415"},{"status":"public","relation":"earlier_version","id":"5436"},{"status":"public","relation":"earlier_version","id":"1656"}]},"oa_version":"Preprint","citation":{"ista":"Chatterjee K, Henzinger TA, Otop J. 2017. Nested weighted automata. ACM Transactions on Computational Logic. 18(4), 31.","apa":"Chatterjee, K., Henzinger, T. A., &#38; Otop, J. (2017). Nested weighted automata. <i>ACM Transactions on Computational Logic</i>. ACM. <a href=\"https://doi.org/10.1145/3152769\">https://doi.org/10.1145/3152769</a>","chicago":"Chatterjee, Krishnendu, Thomas A Henzinger, and Jan Otop. “Nested Weighted Automata.” <i>ACM Transactions on Computational Logic</i>. ACM, 2017. <a href=\"https://doi.org/10.1145/3152769\">https://doi.org/10.1145/3152769</a>.","ama":"Chatterjee K, Henzinger TA, Otop J. Nested weighted automata. <i>ACM Transactions on Computational Logic</i>. 2017;18(4). doi:<a href=\"https://doi.org/10.1145/3152769\">10.1145/3152769</a>","ieee":"K. Chatterjee, T. A. Henzinger, and J. Otop, “Nested weighted automata,” <i>ACM Transactions on Computational Logic</i>, vol. 18, no. 4. ACM, 2017.","mla":"Chatterjee, Krishnendu, et al. “Nested Weighted Automata.” <i>ACM Transactions on Computational Logic</i>, vol. 18, no. 4, 31, ACM, 2017, doi:<a href=\"https://doi.org/10.1145/3152769\">10.1145/3152769</a>.","short":"K. Chatterjee, T.A. Henzinger, J. Otop, ACM Transactions on Computational Logic 18 (2017)."},"intvolume":"        18","date_created":"2018-12-11T11:46:38Z","publisher":"ACM","publication":"ACM Transactions on Computational Logic","ec_funded":1,"publication_identifier":{"issn":["1529-3785"]},"volume":18,"main_file_link":[{"url":"https://arxiv.org/abs/1606.03598","open_access":"1"}],"type":"journal_article","abstract":[{"text":"Recently there has been a significant effort to handle quantitative properties in formal verification and synthesis. While weighted automata over finite and infinite words provide a natural and flexible framework to express quantitative properties, perhaps surprisingly, some basic system properties such as average response time cannot be expressed using weighted automata or in any other known decidable formalism. In this work, we introduce nested weighted automata as a natural extension of weighted automata, which makes it possible to express important quantitative properties such as average response time. In nested weighted automata, a master automaton spins off and collects results from weighted slave automata, each of which computes a quantity along a finite portion of an infinite word. Nested weighted automata can be viewed as the quantitative analogue of monitor automata, which are used in runtime verification. We establish an almost-complete decidability picture for the basic decision problems about nested weighted automata and illustrate their applicability in several domains. In particular, nested weighted automata can be used to decide average response time properties.","lang":"eng"}],"publist_id":"7354","_id":"467","month":"12","isi":1,"external_id":{"arxiv":["1606.03598"],"isi":["000419237100006"]},"language":[{"iso":"eng"}],"article_number":"31","status":"public","issue":"4","scopus_import":"1","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","date_published":"2017-12-01T00:00:00Z","das_tickbox":"1","author":[{"full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","last_name":"Chatterjee"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000−0002−2985−7724","last_name":"Henzinger","full_name":"Henzinger, Thomas A","first_name":"Thomas A"},{"first_name":"Jan","full_name":"Otop, Jan","last_name":"Otop","id":"2FC5DA74-F248-11E8-B48F-1D18A9856A87"}],"day":"01","corr_author":"1","article_processing_charge":"No","arxiv":1,"quality_controlled":"1","project":[{"call_identifier":"FWF","name":"Rigorous Systems Engineering","grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425"},{"_id":"25F42A32-B435-11E9-9278-68D0E5697425","grant_number":"Z211","name":"Formal methods for the design and analysis of complex systems","call_identifier":"FWF"},{"call_identifier":"FWF","name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23","_id":"2584A770-B435-11E9-9278-68D0E5697425"},{"_id":"2581B60A-B435-11E9-9278-68D0E5697425","grant_number":"279307","call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications"},{"name":"Microsoft Research Faculty Fellowship","_id":"2587B514-B435-11E9-9278-68D0E5697425"}],"doi":"10.1145/3152769","title":"Nested weighted automata","department":[{"_id":"KrCh"},{"_id":"ToHe"}]},{"page":"614-642","publisher":"Springer Nature","publication":"Discrete & Computational Geometry","OA_type":"green","date_created":"2026-06-29T12:58:50Z","intvolume":"        58","citation":{"short":"R. Connelly, M. Funkhouser, V.Z. Kuperberg, E. Solomonides, Discrete &#38; Computational Geometry 58 (2017) 614–642.","mla":"Connelly, Robert, et al. “Packings of Equal Disks in a Square Torus.” <i>Discrete &#38; Computational Geometry</i>, vol. 58, no. 3, Springer Nature, 2017, pp. 614–42, doi:<a href=\"https://doi.org/10.1007/s00454-016-9843-x\">10.1007/s00454-016-9843-x</a>.","ieee":"R. Connelly, M. Funkhouser, V. Z. Kuperberg, and E. Solomonides, “Packings of equal disks in a square torus,” <i>Discrete &#38; Computational Geometry</i>, vol. 58, no. 3. Springer Nature, pp. 614–642, 2017.","ama":"Connelly R, Funkhouser M, Kuperberg VZ, Solomonides E. Packings of equal disks in a square torus. <i>Discrete &#38; Computational Geometry</i>. 2017;58(3):614-642. doi:<a href=\"https://doi.org/10.1007/s00454-016-9843-x\">10.1007/s00454-016-9843-x</a>","ista":"Connelly R, Funkhouser M, Kuperberg VZ, Solomonides E. 2017. Packings of equal disks in a square torus. Discrete &#38; Computational Geometry. 58(3), 614–642.","chicago":"Connelly, Robert, Matthew Funkhouser, Vivian Zieve Kuperberg, and Evan Solomonides. “Packings of Equal Disks in a Square Torus.” <i>Discrete &#38; Computational Geometry</i>. Springer Nature, 2017. <a href=\"https://doi.org/10.1007/s00454-016-9843-x\">https://doi.org/10.1007/s00454-016-9843-x</a>.","apa":"Connelly, R., Funkhouser, M., Kuperberg, V. Z., &#38; Solomonides, E. (2017). Packings of equal disks in a square torus. <i>Discrete &#38; Computational Geometry</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00454-016-9843-x\">https://doi.org/10.1007/s00454-016-9843-x</a>"},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1512.08762"}],"article_type":"original","volume":58,"publication_identifier":{"issn":["0179-5376"],"eissn":["1432-0444"]},"date_updated":"2026-07-14T11:14:51Z","oa_version":"Preprint","extern":"1","status":"public","scopus_import":"1","issue":"3","OA_place":"repository","_id":"22198","abstract":[{"text":"Packings of equal disks in the plane are known to have density at most\r\nπ/\r\n√\r\n12, although this density is never achieved in the square torus, which is what we\r\ncall the plane modulo the square lattice. We find packings of disks in a square torus\r\nthat we conjecture to be the most dense for certain numbers of packing disks, using\r\ncontinued fractions to approximate 1/\r\n√\r\n3 and 2 −\r\n√\r\n3. We also define a constant to\r\nmeasure the efficiency of a packing motived by a related constant due to Markov for\r\ncontinued fractions. One idea is to use the unique factorization property of Gaussian\r\nintegers to prove that there is an upper bound for the Markov constant for grid-like\r\npackings. By way of contrast, we show that an upper bound by Gruber [In many cases\r\noptimal configurations are almost regular hexagonal, vol. 65, pp. 121–145, 1999;Geom\r\nDedicata 84(1–3):271–320, 2001] for the error for the limiting density of a packing\r\nof equal disks in a planar square, which is on the order of 1/\r\n√\r\nN, is the best possible,\r\nwhereas for our examples for the square torus, the error for the limiting density is on\r\nthe order of 1/N, where N is the number of packing disks.","lang":"eng"}],"type":"journal_article","external_id":{"arxiv":["1512.08762"]},"language":[{"iso":"eng"}],"month":"01","day":"09","author":[{"full_name":"Connelly, Robert","first_name":"Robert","last_name":"Connelly"},{"first_name":"Matthew","full_name":"Funkhouser, Matthew","last_name":"Funkhouser"},{"first_name":"Vivian Zieve","full_name":"Kuperberg, Vivian Zieve","last_name":"Kuperberg","id":"c3bac823-112d-11f0-a3f5-c264f852e697"},{"last_name":"Solomonides","full_name":"Solomonides, Evan","first_name":"Evan"}],"date_published":"2017-01-09T00:00:00Z","article_processing_charge":"No","arxiv":1,"publication_status":"published","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Packings of equal disks in a square torus","doi":"10.1007/s00454-016-9843-x","quality_controlled":"1"}]