[{"day":"01","type":"journal_article","date_created":"2025-01-26T23:01:49Z","doi":"10.1142/S201032632450028X","arxiv":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2301.04722"}],"status":"public","scopus_import":"1","publication_identifier":{"eissn":["2010-3271"],"issn":["2010-3263"]},"OA_type":"green","issue":"1","title":"Rate of convergence in multiple SLE using random matrix theory","month":"01","language":[{"iso":"eng"}],"OA_place":"repository","publisher":"World Scientific Publishing","article_processing_charge":"No","quality_controlled":"1","publication":"Random Matrices: Theory and Application","date_published":"2025-01-01T00:00:00Z","citation":{"ista":"Campbell AJ, Luh K, Margarint V. 2025. Rate of convergence in multiple SLE using random matrix theory. Random Matrices: Theory and Application. 14(1), 2450028.","apa":"Campbell, A. J., Luh, K., &#38; Margarint, V. (2025). Rate of convergence in multiple SLE using random matrix theory. <i>Random Matrices: Theory and Application</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/S201032632450028X\">https://doi.org/10.1142/S201032632450028X</a>","short":"A.J. Campbell, K. Luh, V. Margarint, Random Matrices: Theory and Application 14 (2025).","chicago":"Campbell, Andrew J, Kyle Luh, and Vlad Margarint. “Rate of Convergence in Multiple SLE Using Random Matrix Theory.” <i>Random Matrices: Theory and Application</i>. World Scientific Publishing, 2025. <a href=\"https://doi.org/10.1142/S201032632450028X\">https://doi.org/10.1142/S201032632450028X</a>.","ieee":"A. J. Campbell, K. Luh, and V. Margarint, “Rate of convergence in multiple SLE using random matrix theory,” <i>Random Matrices: Theory and Application</i>, vol. 14, no. 1. World Scientific Publishing, 2025.","ama":"Campbell AJ, Luh K, Margarint V. Rate of convergence in multiple SLE using random matrix theory. <i>Random Matrices: Theory and Application</i>. 2025;14(1). doi:<a href=\"https://doi.org/10.1142/S201032632450028X\">10.1142/S201032632450028X</a>","mla":"Campbell, Andrew J., et al. “Rate of Convergence in Multiple SLE Using Random Matrix Theory.” <i>Random Matrices: Theory and Application</i>, vol. 14, no. 1, 2450028, World Scientific Publishing, 2025, doi:<a href=\"https://doi.org/10.1142/S201032632450028X\">10.1142/S201032632450028X</a>."},"intvolume":"        14","article_number":"2450028","publication_status":"published","volume":14,"year":"2025","isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-07-10T11:51:29Z","department":[{"_id":"LaEr"}],"abstract":[{"lang":"eng","text":"In this paper, we provide a rate of convergence for a version of the Carathéodory convergence for the multiple SLE model with a Dyson Brownian motion driver towards its hydrodynamic limit, for β=1 and β=2. The results are obtained by combining techniques from the field of Schramm–Loewner Evolutions with modern techniques from random matrices. Our approach shows how one can apply modern tools used in the proof of universality in random matrix theory to the field of Schramm–Loewner Evolutions."}],"author":[{"last_name":"Campbell","first_name":"Andrew J","id":"582b06a9-1f1c-11ee-b076-82ffce00dde4","full_name":"Campbell, Andrew J"},{"first_name":"Kyle","last_name":"Luh","full_name":"Luh, Kyle"},{"first_name":"Vlad","last_name":"Margarint","full_name":"Margarint, Vlad"}],"external_id":{"arxiv":["2301.04722"],"isi":["001397136000001"]},"oa":1,"article_type":"original","oa_version":"Preprint","_id":"18880"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"file":[{"success":1,"creator":"dernst","checksum":"a9ebdb25c43dc2823cc8a1ba9154d914","date_created":"2025-04-16T06:47:09Z","access_level":"open_access","file_size":1251786,"date_updated":"2025-04-16T06:47:09Z","relation":"main_file","content_type":"application/pdf","file_id":"19568","file_name":"2025_Batteries_Jiyane.pdf"}],"publication_status":"published","year":"2025","volume":8,"date_updated":"2026-02-16T12:15:59Z","file_date_updated":"2025-04-16T06:47:09Z","abstract":[{"text":"The determination of the intrinsic properties of solid active material candidates is essential for their performance optimization. However, macroscopic electrodes and related analytical techniques show challenges concerning the number of additional influencing parameters. We explore recessed microelectrodes (rME) as a platform that allows for a binder-free investigation of Prussian Blue analogues (PBA), a family of promising battery materials. The enhanced diffusion using microelectrochemical tools is indispensable to assess the intrinsic material performance, overcoming the limitation of cation diffusion from the electrolyte to the solid interface during (dis)charging cycles and allowing the investigation of limiting steps in the coupled ion-electron transfer process. The intrinsic electrochemical performance of PBAs was studied in a three-electrode configuration by means of cyclic voltammetry and galvanostatic (dis)charging in aqueous Na+-containing electrolyte. We extended the evaluation to the role of the electrolyte on the performance of cathodic and anodic processes of a Mn-based PBA. Ex-situ and operando chemical characterization were coupled to support the microelectrochemical results.","lang":"eng"}],"external_id":{"isi":["001402369200001"]},"author":[{"first_name":"Nomnotho","last_name":"Jiyane","full_name":"Jiyane, Nomnotho"},{"last_name":"Santana Santos","first_name":"Carla","full_name":"Santana Santos, Carla"},{"full_name":"Echevarria Poza, Igor","id":"fbae1d3b-8142-11ed-8927-a8cf34feb495","first_name":"Igor","last_name":"Echevarria Poza"},{"id":"452e82c6-803f-11ed-ab7e-ca0439e73a5d","full_name":"Palacios Corella, Mario","last_name":"Palacios Corella","first_name":"Mario"},{"last_name":"Abdillah Mahbub","first_name":"Muhammad Adib","full_name":"Abdillah Mahbub, Muhammad Adib"},{"last_name":"Marin-Tajadura","first_name":"Gimena","full_name":"Marin-Tajadura, Gimena"},{"last_name":"Quast","first_name":"Thomas","full_name":"Quast, Thomas"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","first_name":"Maria"},{"last_name":"Ventosa","first_name":"Edgar","full_name":"Ventosa, Edgar"},{"full_name":"Schuhmann, Wolfgang","last_name":"Schuhmann","first_name":"Wolfgang"}],"department":[{"_id":"MaIb"}],"oa_version":"Published Version","_id":"18881","oa":1,"article_type":"original","date_created":"2025-01-26T23:01:50Z","doi":"10.1002/batt.202400743","has_accepted_license":"1","status":"public","type":"journal_article","day":"01","acknowledgement":"The authors acknowledge funding from the European Union's Horizon Europe research and innovation programme – European Innovation Council (EIC) under the grant agreement 101046742 (MeBattery), the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (CasCat [833408]), and the Spanish Government (Ministerio de Ciencia e Innovación, Grants PID2021-124974OB-C22). The authors thank Martin Trautmann (RUB) and Prof. Dr. Daniel Grasseschi (Federal University of Rio de Janeiro – UFRJ) for support concerning ICP-MS and Raman measurements, respectively. Open Access funding enabled and organized by Projekt DEAL.","issue":"3","title":"Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application","OA_type":"hybrid","publication_identifier":{"eissn":["2566-6223"]},"scopus_import":"1","ddc":["540"],"quality_controlled":"1","article_processing_charge":"Yes (via OA deal)","publication":"Batteries & Supercaps","month":"03","license":"https://creativecommons.org/licenses/by-nc/4.0/","publisher":"Wiley","OA_place":"publisher","language":[{"iso":"eng"}],"tmp":{"short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png"},"intvolume":"         8","article_number":"e202400743","citation":{"short":"N. Jiyane, C. Santana Santos, I. Echevarria Poza, M. Palacios Corella, M.A. Abdillah Mahbub, G. Marin-Tajadura, T. Quast, M. Ibáñez, E. Ventosa, W. Schuhmann, Batteries &#38; Supercaps 8 (2025).","apa":"Jiyane, N., Santana Santos, C., Echevarria Poza, I., Palacios Corella, M., Abdillah Mahbub, M. A., Marin-Tajadura, G., … Schuhmann, W. (2025). Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application. <i>Batteries &#38; Supercaps</i>. Wiley. <a href=\"https://doi.org/10.1002/batt.202400743\">https://doi.org/10.1002/batt.202400743</a>","ista":"Jiyane N, Santana Santos C, Echevarria Poza I, Palacios Corella M, Abdillah Mahbub MA, Marin-Tajadura G, Quast T, Ibáñez M, Ventosa E, Schuhmann W. 2025. Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application. Batteries &#38; Supercaps. 8(3), e202400743.","mla":"Jiyane, Nomnotho, et al. “Recessed Microelectrodes as a Platform to Investigate the Intrinsic Redox Process of Prussian Blue Analogs for Energy Storage Application.” <i>Batteries &#38; Supercaps</i>, vol. 8, no. 3, e202400743, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/batt.202400743\">10.1002/batt.202400743</a>.","ama":"Jiyane N, Santana Santos C, Echevarria Poza I, et al. Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application. <i>Batteries &#38; Supercaps</i>. 2025;8(3). doi:<a href=\"https://doi.org/10.1002/batt.202400743\">10.1002/batt.202400743</a>","chicago":"Jiyane, Nomnotho, Carla Santana Santos, Igor Echevarria Poza, Mario Palacios Corella, Muhammad Adib Abdillah Mahbub, Gimena Marin-Tajadura, Thomas Quast, Maria Ibáñez, Edgar Ventosa, and Wolfgang Schuhmann. “Recessed Microelectrodes as a Platform to Investigate the Intrinsic Redox Process of Prussian Blue Analogs for Energy Storage Application.” <i>Batteries &#38; Supercaps</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/batt.202400743\">https://doi.org/10.1002/batt.202400743</a>.","ieee":"N. Jiyane <i>et al.</i>, “Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application,” <i>Batteries &#38; Supercaps</i>, vol. 8, no. 3. Wiley, 2025."},"date_published":"2025-03-01T00:00:00Z"},{"status":"public","date_created":"2025-01-26T23:01:50Z","doi":"10.1002/adfm.202421449","acknowledgement":"X.Z. and M.L. contributed equally to this work. This work was supported by the National Key R&D Program of China (No. 2024YFE0105200). Also supported by the China Postdoctoral Science Foundation under Grant Number 2023M743151. M.J. acknowledges funding from the China Postdoctoral Science Foundation (No. 2023M743221). A.C. thanks the support from the projects ENE2016-77798-C4-3-R and NANOGEN (PID2020-116093RB-C43), funded by MCIN/ AEI/10.13039/501100011033/ and by “ERDF A way of making Europe”, by the “European Union”.","type":"journal_article","day":"19","OA_type":"closed access","issue":"24","title":"Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance","publication_identifier":{"issn":["1616-301X"],"eissn":["1616-3028"]},"scopus_import":"1","publication":"Advanced Functional Materials","article_processing_charge":"No","quality_controlled":"1","language":[{"iso":"eng"}],"publisher":"Wiley","month":"06","article_number":"2421449","intvolume":"        35","date_published":"2025-06-19T00:00:00Z","citation":{"apa":"Zhao, X., Li, M., Jia, M., Fiedler, C., Nan, B., Yang, D., … Cabot, A. (2025). Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance. <i>Advanced Functional Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adfm.202421449\">https://doi.org/10.1002/adfm.202421449</a>","ista":"Zhao X, Li M, Jia M, Fiedler C, Nan B, Yang D, Li L, Yuan Z, Song H, Liu Y, Ibáñez M, Wang Z, Shan C, Cabot A. 2025. Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance. Advanced Functional Materials. 35(24), 2421449.","short":"X. Zhao, M. Li, M. Jia, C. Fiedler, B. Nan, D. Yang, L. Li, Z. Yuan, H. Song, Y. Liu, M. Ibáñez, Z. Wang, C. Shan, A. Cabot, Advanced Functional Materials 35 (2025).","ama":"Zhao X, Li M, Jia M, et al. Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance. <i>Advanced Functional Materials</i>. 2025;35(24). doi:<a href=\"https://doi.org/10.1002/adfm.202421449\">10.1002/adfm.202421449</a>","chicago":"Zhao, Xueke, Mengyao Li, Mochen Jia, Christine Fiedler, Bingfei Nan, Dongwen Yang, Lei Li, et al. “Low-Dimensional Structure Modulation in Ag8SnSe6 for Enhanced Thermoelectric Performance.” <i>Advanced Functional Materials</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/adfm.202421449\">https://doi.org/10.1002/adfm.202421449</a>.","ieee":"X. Zhao <i>et al.</i>, “Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance,” <i>Advanced Functional Materials</i>, vol. 35, no. 24. Wiley, 2025.","mla":"Zhao, Xueke, et al. “Low-Dimensional Structure Modulation in Ag8SnSe6 for Enhanced Thermoelectric Performance.” <i>Advanced Functional Materials</i>, vol. 35, no. 24, 2421449, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/adfm.202421449\">10.1002/adfm.202421449</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"volume":35,"year":"2025","publication_status":"published","date_updated":"2025-12-30T07:17:39Z","author":[{"full_name":"Zhao, Xueke","last_name":"Zhao","first_name":"Xueke"},{"last_name":"Li","first_name":"Mengyao","full_name":"Li, Mengyao"},{"full_name":"Jia, Mochen","first_name":"Mochen","last_name":"Jia"},{"last_name":"Fiedler","first_name":"Christine","id":"bd3fceba-dc74-11ea-a0a7-c17f71817366","full_name":"Fiedler, Christine"},{"last_name":"Nan","first_name":"Bingfei","full_name":"Nan, Bingfei"},{"full_name":"Yang, Dongwen","last_name":"Yang","first_name":"Dongwen"},{"last_name":"Li","first_name":"Lei","full_name":"Li, Lei"},{"full_name":"Yuan, Zicheng","last_name":"Yuan","first_name":"Zicheng"},{"last_name":"Song","first_name":"Hongzhang","full_name":"Song, Hongzhang"},{"id":"2A70014E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7313-6740","full_name":"Liu, Yu","last_name":"Liu","first_name":"Yu"},{"full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Ibáñez"},{"last_name":"Wang","first_name":"Ziyu","full_name":"Wang, Ziyu"},{"full_name":"Shan, Chongxin","first_name":"Chongxin","last_name":"Shan"},{"full_name":"Cabot, Andreu","last_name":"Cabot","first_name":"Andreu"}],"external_id":{"isi":["001398067000001"]},"abstract":[{"text":"Ternary liquid-like thermoelectric materials have garnered significant attention due to their ultra-low lattice thermal conductivity. Among these, Ag8SnSe6 stands out for its exceptionally low sound velocity and thermal conductivity. However, the inherent poor electrical conductivity and suboptimal thermoelectric properties of Ag8SnSe6 necessitate further improvement. Here, a novel approach is initiated to enhance the thermoelectric properties of Ag8SnSe6 by combining low-dimensionalization with intrinsic doping. For the first time, this work successfully synthesizes single-phase Ag8SnSe6 nanocrystals, ≈10 nm in size, with the correct phase and composition using a robust and reliable colloidal method. This approach represents a significant improvement over previous reports on this material. Reducing the crystal domains of Ag8SnSe6 to the nanoscale induces quantum confinement effects, increasing the density of states near the Fermi surface. It also introduces additional grain boundaries, which lower the lattice thermal conductivity and simplify structural design. Moreover, incorporating small amounts of Sn nanopowder into the Ag8SnSe6 nanocrystals before consolidation further enhances the thermoelectric performance. Sn acts as a donor dopant, increasing the electronic concentration while at the same time improving their mobility by reducing interface barriers, thus significantly improving the material transport properties. Additionally, the presence of Sn leads to the formation of point defects, dislocations, and secondary phases, which increase phonon scattering and further reduce the thermal conductivity. Through this synergistic optimization, the figure of merit  shows a significant increase across a wide temperature range. Overall, a strategy is presented for the controlled preparation of Ag8SnSe6 nanocrystals, the decoupling of their electrical and thermal transport, and the practical application of this material to thermoelectric single-leg modules.","lang":"eng"}],"department":[{"_id":"MaIb"},{"_id":"GradSch"}],"_id":"18882","oa_version":"None","article_type":"original"},{"year":"2025","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"id":"18144","status":"public","relation":"used_in_publication"},{"id":"19401","relation":"used_in_publication","status":"public"}]},"file":[{"creator":"arashid","success":1,"date_created":"2025-01-27T11:27:30Z","checksum":"977dffed4bec3c7d6315aa1cbd19e8a7","access_level":"open_access","date_updated":"2025-01-27T11:27:30Z","file_size":1017,"file_id":"18893","content_type":"text/plain","relation":"main_file","file_name":"readme.txt"},{"access_level":"open_access","creator":"arashid","success":1,"date_created":"2025-01-27T11:27:35Z","checksum":"7ab5e3e65ddf59bbf3622ace8a0cda1c","file_name":"research_data.zip","file_size":33815056,"date_updated":"2025-01-27T11:27:35Z","content_type":"application/zip","file_id":"18894","relation":"main_file"}],"file_date_updated":"2025-01-27T11:27:35Z","date_updated":"2026-05-20T06:34:50Z","department":[{"_id":"GeKa"},{"_id":"GradSch"}],"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"abstract":[{"lang":"eng","text":"Research Data for publication 'Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors'"}],"author":[{"id":"396A1950-F248-11E8-B48F-1D18A9856A87","full_name":"Janik, Marian","orcid":"0009-0003-9037-8831","last_name":"Janik","first_name":"Marian"}],"oa":1,"oa_version":"Published Version","project":[{"_id":"34c0acea-11ca-11ed-8bc3-8775e10fd452","grant_number":"101069515","name":"Integrated Germanium Quantum Technology"},{"name":"Towards scalable hut wire quantum devices","grant_number":"P32235","_id":"237B3DA4-32DE-11EA-91FC-C7463DDC885E","call_identifier":"FWF"},{"_id":"bd8bd29e-d553-11ed-ba76-f0070d4b237a","grant_number":"P36507","name":"Merging spin and superconducting qubits in planar Ge"},{"name":"High impedance circuit quantum electrodynamics with hole spins","grant_number":"I05060","_id":"c0977eea-5a5b-11eb-8a69-a862db0cf4d1"}],"_id":"18886","day":"27","type":"research_data","acknowledgement":"We acknowledge Franco De Palma, Mahya Khorramshahi, Fabian Oppliger, Thomas Reisinger, Pasquale Scarlino and Xiao Xue for helpful discussions. We thank Simon Robson for proofreading the manuscript. This research was supported by the Scientific Service Units of ISTA through resources provided by the MIBA Machine Shop and the Nanofabrication facility. This research and related results were made possible with the support of the NOMIS Foundation and the HORIZON-RIA 101069515 project. This research was funded in whole or in part by the Austrian Science Fund (FWF) DOI:10.55776/P32235, DOI:10.55776/I5060 and DOI:10.55776/P36507. For Open Access purposes, the author has applied a CC BY public copyright license to any author accepted manuscript version arising from this submission. M.J. acknowledges funding from FellowQUTE 2024-01. I.M.P. acknowledges funding from the Deutsche Forschungsgemeinschaft (DFG – German Research Foundation) under project number 450396347 (GeHoldeQED). ICN2 acknowledges funding from Generalitat de Catalunya 2021SGR00457. We acknowledge support from CSIC Interdisciplinary Thematic Platform (PTI+) on Quantum Technologies (PTI-QTEP+). This research work has been funded by the European Commission – NextGenerationEU (Regulation EU 2020/2094), through CSIC's Quantum Technologies Platform (QTEP). ICN2 is supported by the Severo Ochoa program from Spanish MCIN/AEI (Grant No.: CEX2021-001214-S) and is funded by the CERCA Programme/Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science PhD program. AGM has received funding from Grant RYC2021-033479-I funded by MCIN/AEI/10.13039/501100011033 and by European Union NextGenerationEU/PRTR. M.B. acknowledges support from SUR Generalitat de Catalunya and the EU Social Fund; project ref. 2020 FI 00103. The authors acknowledge the use of instrumentation and the technical advice provided by the Joint Electron Microscopy Center at ALBA (JEMCA). ICN2 acknowledges funding from Grant IU16-014206 (METCAM-FIB) funded by the European Union through the European Regional Development Fund (ERDF), with the support of the Ministry of Research and Universities, Generalitat de Catalunya. ICN2 is a founding member of e-DREAM.","doi":"10.15479/AT:ISTA:18886","date_created":"2025-01-27T09:48:44Z","has_accepted_license":"1","status":"public","ddc":["530"],"corr_author":"1","title":"Research data for publication 'Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors'","OA_type":"gold","month":"01","OA_place":"repository","publisher":"Institute of Science and Technology Austria","article_processing_charge":"No","citation":{"ista":"Janik M. 2025. Research data for publication ‘Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:18886\">10.15479/AT:ISTA:18886</a>.","apa":"Janik, M. (2025). Research data for publication “Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:18886\">https://doi.org/10.15479/AT:ISTA:18886</a>","short":"M. Janik, (2025).","chicago":"Janik, Marian. “Research Data for Publication ‘Strong Charge-Photon Coupling in Planar Germanium Enabled by Granular Aluminium Superinductors.’” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/AT:ISTA:18886\">https://doi.org/10.15479/AT:ISTA:18886</a>.","ieee":"M. Janik, “Research data for publication ‘Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors.’” Institute of Science and Technology Austria, 2025.","ama":"Janik M. Research data for publication “Strong charge-photon coupling in planar germanium enabled by granular aluminium superinductors.” 2025. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:18886\">10.15479/AT:ISTA:18886</a>","mla":"Janik, Marian. <i>Research Data for Publication “Strong Charge-Photon Coupling in Planar Germanium Enabled by Granular Aluminium Superinductors.”</i> Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:18886\">10.15479/AT:ISTA:18886</a>."},"date_published":"2025-01-27T00:00:00Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"contributor":[{"id":"53f93ea2-803f-11ed-ab7e-b283135794ef","first_name":"Kevin Etienne Robert","last_name":"Roux","contributor_type":"researcher"},{"id":"18777c01-896a-11ed-bdf8-e4851dc07d16","last_name":"Borja Espinosa","contributor_type":"researcher","first_name":"Carla N"},{"id":"71616374-A8E9-11E9-A7CA-09ECE5697425","contributor_type":"researcher","last_name":"Sagi","first_name":"Oliver"},{"first_name":"Abdulhamid","contributor_type":"researcher","last_name":"Baghdadi","id":"160D87FA-96B5-11E9-BF77-7626E6697425"},{"id":"38756BB2-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas","last_name":"Adletzberger","contributor_type":"researcher"},{"first_name":"Stefano","last_name":"Calcaterra","contributor_type":"researcher"},{"first_name":"Marc","last_name":"Botifoll","contributor_type":"researcher"},{"contributor_type":"researcher","last_name":"Manjón","first_name":"Alba Garzón"},{"first_name":"Jordi","last_name":"Arbiol","contributor_type":"researcher"},{"last_name":"Chrastina","contributor_type":"researcher","first_name":"Daniel"},{"first_name":"Giovanni","last_name":"Isella","contributor_type":"researcher"},{"first_name":"Ioan M.","last_name":"Pop","contributor_type":"researcher"},{"last_name":"Katsaros","contributor_type":"researcher","first_name":"Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8342-202X"}]},{"status":"public","has_accepted_license":"1","main_file_link":[{"url":"https://doi.org/10.1101/2024.02.27.582277","open_access":"1"}],"doi":"10.1038/s41467-025-66175-z","date_created":"2025-01-27T11:28:05Z","acknowledgement":"We thank Joergen Eilenberg and Nicolai V. Meyling for the fungal strain, and the ISTA Social Immunity team, Jonghyun Park and Yuko Ulrich for ant collection. We also thank the Social Immunity team, in particular David Moreno Martínez, Tanvi Madaan, Wilfrid Jean Louis and Jessica Kirchner, for experimental and molecular support, as well as Friedrich Fochler for technical support with the chemical analysis, and the ISTA Lab Support Facility, including the mass spectrometry unit, for general and chemical laboratory support. We further thank Marco Ribezzi for advice on 13C calculations and Ernst Pittenauer for discussion of the chemical data, Chris Pull and Michael Sixt for project discussion, and the Social Immunity team for comments on the manuscript. The study was funded by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation Programme (No. 771402; EPIDEMICSonCHIP) to SC.","DOAJ_listed":"1","day":"01","type":"journal_article","title":"Altruistic disease signalling in ant colonies","OA_type":"gold","publication_identifier":{"eissn":["2041-1723"]},"scopus_import":"1","corr_author":"1","ddc":["570"],"publication":"Nature Communications","quality_controlled":"1","article_processing_charge":"Yes","OA_place":"publisher","publisher":"Springer Nature","language":[{"iso":"eng"}],"pmid":1,"month":"12","article_number":"10511","intvolume":"        16","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"apa":"Dawson, E., Hönigsberger, M., Kampleitner, N., Grasse, A. V., Lindorfer, L., Robb, J., … Cremer, S. (2025). Altruistic disease signalling in ant colonies. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-025-66175-z\">https://doi.org/10.1038/s41467-025-66175-z</a>","ista":"Dawson E, Hönigsberger M, Kampleitner N, Grasse AV, Lindorfer L, Robb J, Beikzadeh F, Strahodinsky F, Leitner H, Rajendran H, Schmitt T, Cremer S. 2025. Altruistic disease signalling in ant colonies. Nature Communications. 16, 10511.","short":"E. Dawson, M. Hönigsberger, N. Kampleitner, A.V. Grasse, L. Lindorfer, J. Robb, F. Beikzadeh, F. Strahodinsky, H. Leitner, H. Rajendran, T. Schmitt, S. Cremer, Nature Communications 16 (2025).","ieee":"E. Dawson <i>et al.</i>, “Altruistic disease signalling in ant colonies,” <i>Nature Communications</i>, vol. 16. Springer Nature, 2025.","chicago":"Dawson, Erika, Michaela Hönigsberger, Niklas Kampleitner, Anna V Grasse, Lukas Lindorfer, Jennifer Robb, Farnaz Beikzadeh, et al. “Altruistic Disease Signalling in Ant Colonies.” <i>Nature Communications</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41467-025-66175-z\">https://doi.org/10.1038/s41467-025-66175-z</a>.","ama":"Dawson E, Hönigsberger M, Kampleitner N, et al. Altruistic disease signalling in ant colonies. <i>Nature Communications</i>. 2025;16. doi:<a href=\"https://doi.org/10.1038/s41467-025-66175-z\">10.1038/s41467-025-66175-z</a>","mla":"Dawson, Erika, et al. “Altruistic Disease Signalling in Ant Colonies.” <i>Nature Communications</i>, vol. 16, 10511, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41467-025-66175-z\">10.1038/s41467-025-66175-z</a>."},"date_published":"2025-12-01T00:00:00Z","related_material":{"link":[{"description":"News on ISTA website","relation":"press_release","url":"https://ista.ac.at/en/news/ants-signal-deadly-infection/"}],"record":[{"id":"20471","relation":"research_data","status":"public"}]},"file":[{"file_id":"20826","content_type":"application/pdf","relation":"main_file","file_size":805323,"date_updated":"2025-12-15T13:30:33Z","file_name":"2025_NatureComm_Dawson.pdf","date_created":"2025-12-15T13:30:33Z","checksum":"06244623bb7611c636652ecbc4787889","creator":"dernst","success":1,"access_level":"open_access"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":16,"year":"2025","APC_amount":"7068 EUR","publication_status":"published","date_updated":"2026-06-10T08:50:53Z","file_date_updated":"2025-12-15T13:30:33Z","external_id":{"pmid":["41330896"]},"author":[{"last_name":"Dawson","first_name":"Erika","id":"31B4E2D0-F248-11E8-B48F-1D18A9856A87","full_name":"Dawson, Erika"},{"full_name":"Hönigsberger, Michaela","id":"953894f3-25bd-11ec-8556-f70a9d38ef60","first_name":"Michaela","last_name":"Hönigsberger"},{"id":"2AC57FAC-F248-11E8-B48F-1D18A9856A87","full_name":"Kampleitner, Niklas","last_name":"Kampleitner","first_name":"Niklas"},{"id":"406F989C-F248-11E8-B48F-1D18A9856A87","full_name":"Grasse, Anna V","last_name":"Grasse","first_name":"Anna V"},{"id":"85f0e6d3-06b3-11ec-8982-8c5049fa4455","full_name":"Lindorfer, Lukas","last_name":"Lindorfer","first_name":"Lukas"},{"first_name":"Jennifer","last_name":"Robb","full_name":"Robb, Jennifer","id":"7bc2734a-e2c6-11ea-9824-a2ed5f0662a8"},{"full_name":"Beikzadeh Abbasi, Farnaz","id":"0344bfb9-3feb-11ee-87e9-c27edc800bcd","first_name":"Farnaz","last_name":"Beikzadeh Abbasi"},{"first_name":"Florian","last_name":"Strahodinsky","full_name":"Strahodinsky, Florian","id":"979E35EE-C996-11E9-8C7C-CF13E6697425"},{"id":"8fc5c6f6-5903-11ec-abad-c83f046253e7","full_name":"Leitner, Hanna","last_name":"Leitner","first_name":"Hanna"},{"full_name":"Rajendran, Harikrishnan","id":"876b6b34-8ff4-11ec-97c9-8d95a7aae416","first_name":"Harikrishnan","last_name":"Rajendran"},{"first_name":"Thomas","last_name":"Schmitt","full_name":"Schmitt, Thomas"},{"last_name":"Cremer","first_name":"Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868","full_name":"Cremer, Sylvia"}],"acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"MassSpec"}],"abstract":[{"lang":"eng","text":"Sick individuals often conceal their disease status to group members, thereby preventing social exclusion or aggression. Here we show by behavioural, chemical, immunological and infection load analyses that sick ant pupae instead actively emit a chemical signal that in itself is sufficient to trigger their own destruction by colony members. In our experiments, this altruistic disease-signalling was performed only by worker but not queen pupae. The lack of signalling by queen pupae did not constitute cheating behaviour, but reflected their superior immune capabilities. Worker pupae suffered from extensive pathogen replication whereas queen pupae were able to restrain their infection. Our data suggest the evolution of a finely-tuned signalling system in which it is not the induction of an individual’s immune response, but rather its failure to overcome the infection, that triggers pupal signalling for sacrifice. This demonstrates a balanced interplay between individual and social immunity that efficiently achieves whole-colony health."}],"PlanS_conform":"1","department":[{"_id":"SyCr"},{"_id":"LifeSc"}],"_id":"18892","ec_funded":1,"project":[{"call_identifier":"H2020","grant_number":"771402","_id":"2649B4DE-B435-11E9-9278-68D0E5697425","name":"Epidemics in ant societies on a chip"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"oa_version":"Published Version","article_type":"original","oa":1},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"file":[{"file_name":"2025_Genetics_Grah.pdf","file_id":"19580","content_type":"application/pdf","relation":"main_file","date_updated":"2025-04-16T09:41:04Z","file_size":1511688,"access_level":"open_access","date_created":"2025-04-16T09:41:04Z","checksum":"f730e416795969449ef49d97b82ac494","creator":"dernst","success":1}],"publication_status":"published","volume":229,"year":"2025","date_updated":"2025-05-19T14:08:02Z","file_date_updated":"2025-04-16T09:41:04Z","abstract":[{"lang":"eng","text":"A major obstacle to predictive understanding of evolution stems from the complexity of biological systems, which prevents detailed characterization of key evolutionary properties. Here, we highlight some of the major sources of complexity that arise when relating molecular mechanisms to their evolutionary consequences and ask whether accounting for every mechanistic detail is important to accurately predict evolutionary outcomes. To do this, we developed a mechanistic model of a bacterial promoter regulated by 2 proteins, allowing us to connect any promoter genotype to 6 phenotypes that capture the dynamics of gene expression following an environmental switch. Accounting for the mechanisms that govern how this system works enabled us to provide an in-depth picture of how regulated bacterial promoters might evolve. More importantly, we used the model to explore which factors that contribute to the complexity of this system are essential for understanding its evolution, and which can be simplified without information loss. We found that several key evolutionary properties—the distribution of phenotypic and fitness effects of mutations, the evolutionary trajectories during selection for regulation—can be accurately captured without accounting for all, or even most, parameters of the system. Our findings point to the need for a mechanistic approach to studying evolution, as it enables tackling biological complexity and in doing so improves the ability to predict evolutionary outcomes."}],"external_id":{"isi":["001379194200001"],"pmid":["39601269"]},"author":[{"id":"483E70DE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2539-3560","full_name":"Grah, Rok","last_name":"Grah","first_name":"Rok"},{"full_name":"Guet, Calin C","orcid":"0000-0001-6220-2052","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","first_name":"Calin C","last_name":"Guet"},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","full_name":"Tkačik, Gašper","orcid":"0000-0002-6699-1455","last_name":"Tkačik","first_name":"Gašper"},{"first_name":"Mato","last_name":"Lagator","full_name":"Lagator, Mato","id":"345D25EC-F248-11E8-B48F-1D18A9856A87"}],"department":[{"_id":"CaGu"},{"_id":"GaTk"}],"oa_version":"Published Version","_id":"18936","oa":1,"article_type":"original","date_created":"2025-01-29T08:21:35Z","doi":"10.1093/genetics/iyae191","has_accepted_license":"1","status":"public","type":"journal_article","day":"01","acknowledgement":"The authors thank Nick Barton, Stepan Denisov, Claudia Igler, Srdjan Sarikas, Anna Staron, and the anonymous reviewers for useful comments and discussions that helped improve our work.\r\nFunding for this work was provided by the Wellcome Trust–Royal Society Sir Henry Dale Fellowship (216779/Z/19/Z) and the Royal Society Research Grant (RG\\R2\\232522) to M.L.","title":"Linking molecular mechanisms to their evolutionary consequences: a primer","issue":"2","OA_type":"hybrid","publication_identifier":{"eissn":["1943-2631"]},"scopus_import":"1","ddc":["570"],"corr_author":"1","quality_controlled":"1","article_processing_charge":"Yes (in subscription journal)","publication":"Genetics","pmid":1,"month":"02","OA_place":"publisher","publisher":"Oxford University Press","language":[{"iso":"eng"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_number":"iyae191","intvolume":"       229","citation":{"mla":"Grah, Rok, et al. “Linking Molecular Mechanisms to Their Evolutionary Consequences: A Primer.” <i>Genetics</i>, vol. 229, no. 2, iyae191, Oxford University Press, 2025, doi:<a href=\"https://doi.org/10.1093/genetics/iyae191\">10.1093/genetics/iyae191</a>.","chicago":"Grah, Rok, Calin C Guet, Gašper Tkačik, and Mato Lagator. “Linking Molecular Mechanisms to Their Evolutionary Consequences: A Primer.” <i>Genetics</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/genetics/iyae191\">https://doi.org/10.1093/genetics/iyae191</a>.","ieee":"R. Grah, C. C. Guet, G. Tkačik, and M. Lagator, “Linking molecular mechanisms to their evolutionary consequences: a primer,” <i>Genetics</i>, vol. 229, no. 2. Oxford University Press, 2025.","ama":"Grah R, Guet CC, Tkačik G, Lagator M. Linking molecular mechanisms to their evolutionary consequences: a primer. <i>Genetics</i>. 2025;229(2). doi:<a href=\"https://doi.org/10.1093/genetics/iyae191\">10.1093/genetics/iyae191</a>","short":"R. Grah, C.C. Guet, G. Tkačik, M. Lagator, Genetics 229 (2025).","apa":"Grah, R., Guet, C. C., Tkačik, G., &#38; Lagator, M. (2025). Linking molecular mechanisms to their evolutionary consequences: a primer. <i>Genetics</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/genetics/iyae191\">https://doi.org/10.1093/genetics/iyae191</a>","ista":"Grah R, Guet CC, Tkačik G, Lagator M. 2025. Linking molecular mechanisms to their evolutionary consequences: a primer. Genetics. 229(2), iyae191."},"date_published":"2025-02-01T00:00:00Z"},{"publication_status":"published","year":"2025","volume":17,"isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-12-30T07:08:34Z","department":[{"_id":"EdHa"}],"abstract":[{"text":"The importance of physical forces in the morphogenesis, homeostatic function, and pathological dysfunction of multicellular tissues is being increasingly characterized, both theoretically and experimentally. Analogies between biological systems and inert materials such as foams, gels, and liquid crystals have provided striking insights into the core design principles underlying multicellular organization. However, these connections can seem surprising given that a key feature of multicellular systems is their ability to constantly consume energy, providing an active origin for the forces that they produce. Key emerging questions are, therefore, to understand whether and how this activity grants tissues novel properties that do not have counterparts in classical materials, as well as their consequences for biological function. Here, we review recent discoveries at the intersection of active matter and tissue biology, with an emphasis on how modeling and experiments can be combined to understand the dynamics of multicellular systems. These approaches suggest that a number of key biological tissue-scale phenomena, such as morphogenetic shape changes, collective migration, or fate decisions, share unifying design principles that can be described by physical models of tissue active matter.","lang":"eng"}],"external_id":{"pmid":["38951023"],"isi":["001456660400001"]},"author":[{"orcid":"0000-0001-7205-2975","full_name":"Brückner, David","id":"e1e86031-6537-11eb-953a-f7ab92be508d","first_name":"David","last_name":"Brückner"},{"last_name":"Hannezo","first_name":"Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","full_name":"Hannezo, Edouard B"}],"article_type":"original","oa_version":"None","_id":"18960","project":[{"name":"A mechano-chemical theory for stem cell fate decisions in organoid development","_id":"34e2a5b5-11ca-11ed-8bc3-b2265616ef0b","grant_number":"ALTF 343-2022"},{"name":"Design Principles of Branching Morphogenesis","grant_number":"851288","_id":"05943252-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020"}],"ec_funded":1,"day":"01","type":"journal_article","acknowledgement":"We thank Fridtjof Brauns, Anna Kicheva, and Carl-Philipp Heisenberg for a critical reading of the manuscript and Claudia Flandoli for the artwork in the figures. D.B.B. was supported by the NOMIS foundation as a NOMIS Fellow and by an EMBO Postdoctoral Fellowship (ALTF 343-2022). This work received funding from the European Research Council (ERC) under the European Union\\u2019s Horizon 2020 Research and Innovation Programme Grant Agreement no. 851288.","doi":"10.1101/cshperspect.a041653","date_created":"2025-01-29T13:33:47Z","status":"public","scopus_import":"1","publication_identifier":{"issn":["1943-0264"]},"corr_author":"1","title":"Tissue active matter: Integrating mechanics and signaling into dynamical models","issue":"4","OA_type":"closed access","pmid":1,"month":"04","publisher":"Cold Spring Harbor Laboratory Press","language":[{"iso":"eng"}],"quality_controlled":"1","article_processing_charge":"No","publication":"Cold Spring Harbor Perspectives in Biology","citation":{"apa":"Brückner, D., &#38; Hannezo, E. B. (2025). Tissue active matter: Integrating mechanics and signaling into dynamical models. <i>Cold Spring Harbor Perspectives in Biology</i>. Cold Spring Harbor Laboratory Press. <a href=\"https://doi.org/10.1101/cshperspect.a041653\">https://doi.org/10.1101/cshperspect.a041653</a>","ista":"Brückner D, Hannezo EB. 2025. Tissue active matter: Integrating mechanics and signaling into dynamical models. Cold Spring Harbor Perspectives in Biology. 17(4), a041653.","short":"D. Brückner, E.B. Hannezo, Cold Spring Harbor Perspectives in Biology 17 (2025).","chicago":"Brückner, David, and Edouard B Hannezo. “Tissue Active Matter: Integrating Mechanics and Signaling into Dynamical Models.” <i>Cold Spring Harbor Perspectives in Biology</i>. Cold Spring Harbor Laboratory Press, 2025. <a href=\"https://doi.org/10.1101/cshperspect.a041653\">https://doi.org/10.1101/cshperspect.a041653</a>.","ieee":"D. Brückner and E. B. Hannezo, “Tissue active matter: Integrating mechanics and signaling into dynamical models,” <i>Cold Spring Harbor Perspectives in Biology</i>, vol. 17, no. 4. Cold Spring Harbor Laboratory Press, 2025.","ama":"Brückner D, Hannezo EB. Tissue active matter: Integrating mechanics and signaling into dynamical models. <i>Cold Spring Harbor Perspectives in Biology</i>. 2025;17(4). doi:<a href=\"https://doi.org/10.1101/cshperspect.a041653\">10.1101/cshperspect.a041653</a>","mla":"Brückner, David, and Edouard B. Hannezo. “Tissue Active Matter: Integrating Mechanics and Signaling into Dynamical Models.” <i>Cold Spring Harbor Perspectives in Biology</i>, vol. 17, no. 4, a041653, Cold Spring Harbor Laboratory Press, 2025, doi:<a href=\"https://doi.org/10.1101/cshperspect.a041653\">10.1101/cshperspect.a041653</a>."},"date_published":"2025-04-01T00:00:00Z","intvolume":"        17","article_number":"a041653"},{"alternative_title":["ISTA Thesis"],"degree_awarded":"PhD","supervisor":[{"orcid":"0000-0002-9823-6833","full_name":"Edelsbrunner, Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","first_name":"Herbert","last_name":"Edelsbrunner"}],"file_date_updated":"2025-02-04T16:22:07Z","date_updated":"2026-04-07T11:47:30Z","keyword":["topological data analysis","chromatic point set","alpha complex","persistent homology","six pack","sheaf","microlocal discrete Morse","injective resolution","collapse","knot","discrete Morse theory"],"year":"2025","publication_status":"published","related_material":{"record":[{"id":"15091","relation":"part_of_dissertation","status":"public"},{"id":"18981","relation":"part_of_dissertation","status":"public"}]},"file":[{"access_level":"closed","creator":"odragano","date_created":"2025-01-31T16:58:30Z","checksum":"af6567e5d35e5eb330b8925ae37f1998","file_name":"Thesis.zip","date_updated":"2025-01-31T16:58:30Z","file_size":11899491,"content_type":"application/zip","file_id":"18983","relation":"source_file"},{"content_type":"application/pdf","file_id":"19000","relation":"main_file","date_updated":"2025-02-04T16:22:07Z","file_size":8857514,"file_name":"Thesis.pdf","date_created":"2025-02-04T16:22:07Z","checksum":"c3fef68e35b9dc2020b2ca6006da6343","creator":"odragano","access_level":"open_access"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","page":"140","oa":1,"_id":"18979","project":[{"name":"Persistence and stability of geometric complexes","grant_number":"I02979-N35","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"call_identifier":"FWF","_id":"268116B8-B435-11E9-9278-68D0E5697425","grant_number":"Z00342","name":"Mathematics, Computer Science"}],"oa_version":"Published Version","department":[{"_id":"GradSch"},{"_id":"HeEd"}],"author":[{"orcid":"0000-0003-0464-3823","full_name":"Draganov, Ondrej","id":"2B23F01E-F248-11E8-B48F-1D18A9856A87","first_name":"Ondrej","last_name":"Draganov"}],"abstract":[{"text":"Topological Data Analysis (TDA) is a discipline utilizing the mathematical field of topology to study data, most prominently collections of point sets. This thesis summarizes three projects related to computations in TDA.\r\n\r\nThe first one establishes a variant of TDA for chromatic point sets, where each point is given a color. For example, we are given positions of cells within a tumor microenvironment, and color the cancerous cells red, and the immune cells blue.\r\n\r\nThe aim is then to give a quantitative description of how the two or more sets of points spatially interact. Building on image, kernel and cokernel variants of persistent homology, we suggest six-packs of persistent diagrams as such a descriptor.\r\n\r\nWe describe a construction of a chromatic alpha complex, which enables  efficient computation of several variants of the six-packs. We give topological descriptions of natural subcomplexes of the chromatic alpha complex, and show that the radii of the simplices form a discrete Morse function. Finally, we provide an implementation of the presented chromatic TDA pipeline.\r\n\r\nThe second part aims to translate a powerful tool of sheaf theory to elementary terms using labeled matrices. The goal is to enable their use in computational settings. We show that derived categories of sheaves over finite posets have, up to isomorphism, unique objects---minimal injective resolutions---and give a concrete algorithm to compute them. We further describe simple algorithms to compute derived pushforwards and pullbacks for monotonic maps, and their proper variants for inclusions, and demonstrate their tractability by providing an implementation. Finally, we suggest a discrete definition of microsupport and show desirable properties inspired by discrete Morse theory.\r\n\r\nIn the last part, we present a collection of observations about collapses. We give a characterization of collapsibility in terms of unitriangular submatrices of the boundary matrix, a cotree-tree decomposition, and the optimal solution to a variant of the Procrustes problem. We establish relation between dual collapses and relative Morse theory and pose several open questions. Finally, focusing on complexes embedded in the three-dimensional Euclidean space, we describe a relation between the collapsibility and the triviality of a polygonal knot.","lang":"eng"}],"publication_identifier":{"issn":["2663-337X"]},"corr_author":"1","ddc":["514","004"],"title":"Structures and computations in topological data analysis","acknowledgement":"The research presented in this thesis was funded with the Wittgenstein Prize,\r\nAustrian Science Fund (FWF), grant no. Z 342-N31, and from the DFG Collaborative Research\r\nCenter TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund (FWF),\r\ngrant no. I 02979-N35.\r\n","day":"03","type":"dissertation","has_accepted_license":"1","status":"public","date_created":"2025-01-31T17:04:40Z","doi":"10.15479/at:ista:18979","citation":{"mla":"Draganov, Ondrej. <i>Structures and Computations in Topological Data Analysis</i>. Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/at:ista:18979\">10.15479/at:ista:18979</a>.","ama":"Draganov O. Structures and computations in topological data analysis. 2025. doi:<a href=\"https://doi.org/10.15479/at:ista:18979\">10.15479/at:ista:18979</a>","chicago":"Draganov, Ondrej. “Structures and Computations in Topological Data Analysis.” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/at:ista:18979\">https://doi.org/10.15479/at:ista:18979</a>.","ieee":"O. Draganov, “Structures and computations in topological data analysis,” Institute of Science and Technology Austria, 2025.","short":"O. Draganov, Structures and Computations in Topological Data Analysis, Institute of Science and Technology Austria, 2025.","apa":"Draganov, O. (2025). <i>Structures and computations in topological data analysis</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:18979\">https://doi.org/10.15479/at:ista:18979</a>","ista":"Draganov O. 2025. Structures and computations in topological data analysis. Institute of Science and Technology Austria."},"date_published":"2025-02-03T00:00:00Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"OA_place":"publisher","publisher":"Institute of Science and Technology Austria","language":[{"iso":"eng"}],"month":"02","article_processing_charge":"No"},{"article_processing_charge":"Yes","quality_controlled":"1","publication":"Monthly Notices of the Royal Astronomical Society","month":"02","language":[{"iso":"eng"}],"publisher":"Oxford University Press","OA_place":"publisher","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"intvolume":"       537","date_published":"2025-02-01T00:00:00Z","citation":{"apa":"Xing, Z., Torres Rodriguez, S., Götberg, Y. L. L., Trani, A. A., Korol, V., &#38; Cuadra, J. (2025). Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries. <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/mnras/stae2820\">https://doi.org/10.1093/mnras/stae2820</a>","ista":"Xing Z, Torres Rodriguez S, Götberg YLL, Trani AA, Korol V, Cuadra J. 2025. Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries. Monthly Notices of the Royal Astronomical Society. 537(1), 285–292.","short":"Z. Xing, S. Torres Rodriguez, Y.L.L. Götberg, A.A. Trani, V. Korol, J. Cuadra, Monthly Notices of the Royal Astronomical Society 537 (2025) 285–292.","chicago":"Xing, Zepei, Santiago Torres Rodriguez, Ylva Louise Linsdotter Götberg, Alessandro A. Trani, Valeriya Korol, and Jorge Cuadra. “Combining REBOUND and MESA: Dynamical Evolution of Planets Orbiting Interacting Binaries.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/mnras/stae2820\">https://doi.org/10.1093/mnras/stae2820</a>.","ieee":"Z. Xing, S. Torres Rodriguez, Y. L. L. Götberg, A. A. Trani, V. Korol, and J. Cuadra, “Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries,” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 537, no. 1. Oxford University Press, pp. 285–292, 2025.","ama":"Xing Z, Torres Rodriguez S, Götberg YLL, Trani AA, Korol V, Cuadra J. Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries. <i>Monthly Notices of the Royal Astronomical Society</i>. 2025;537(1):285-292. doi:<a href=\"https://doi.org/10.1093/mnras/stae2820\">10.1093/mnras/stae2820</a>","mla":"Xing, Zepei, et al. “Combining REBOUND and MESA: Dynamical Evolution of Planets Orbiting Interacting Binaries.” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 537, no. 1, Oxford University Press, 2025, pp. 285–92, doi:<a href=\"https://doi.org/10.1093/mnras/stae2820\">10.1093/mnras/stae2820</a>."},"date_created":"2025-02-02T23:01:53Z","doi":"10.1093/mnras/stae2820","arxiv":1,"status":"public","has_accepted_license":"1","type":"journal_article","day":"01","DOAJ_listed":"1","acknowledgement":"We thank the participants of the 2023 Kavli Summer Program in Astrophysics, hosted by the Max Planck Institute for Astrophysics and funded by the Kavli Foundation. In particular, Holly Preece, Selma de Mink, and Stephen Justham for their feedback and comments on our work. ZX acknowledges support from the China Scholarship Council (CSC). ST acknowledges the funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 101034413. AAT acknowledges support from the Horizon Europe research and innovation programmes under the Marie Skłodowska-Curie grant agreement no. 101103134.","OA_type":"gold","issue":"1","title":"Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries","ddc":["520"],"scopus_import":"1","publication_identifier":{"issn":["0035-8711"],"eissn":["1365-2966"]},"abstract":[{"lang":"eng","text":"Although planets have been found orbiting binary systems, whether they can survive binary interactions is debated. While the tightest-orbit binaries should host the most dynamically stable and long-lived circumbinary planetary systems, they are also the systems that are expected to experience mass transfer, common envelope evolution, or stellar mergers. In this study, we explore the effect of stable non-conservative mass transfer on the dynamical evolution of circumbinary planets. We present a new script that seamlessly integrates binary evolution data from the 1D binary stellar evolution code MESA into the N-body simulation code REBOUND. This integration framework enables a comprehensive examination of the dynamical evolution of circumbinary planets orbiting mass-transferring binaries, while simultaneously accounting for the detailed stellar structure evolution. In addition, we introduce a recalibration method to mitigate numerical errors from updates of binary properties during the system's dynamical evolution. We construct a reference binary model in which a 2.21M⊙ star loses its hydrogen-rich envelope through non-conservative mass transfer to the 1.76M⊙ companion star, creating a 0.38M⊙ subdwarf. We find the tightest stable orbital separation for circumbinary planets to be ≃2.5 times the binary separation after mass transfer. Accounting for tides by using the interior stellar structure, we find that tidal effects become apparent after the rapid mass transfer phase and start to fade away during the latter stage of the slow mass transfer phase. Our research provides a new framework for exploring circumbinary planet dynamics in interacting binary systems."}],"author":[{"full_name":"Xing, Zepei","last_name":"Xing","first_name":"Zepei"},{"orcid":"0000-0002-3150-8988","full_name":"Torres Rodriguez, Santiago","id":"a8df4360-4328-11ee-8f1a-e502d0c83fc2","first_name":"Santiago","last_name":"Torres Rodriguez"},{"first_name":"Ylva Louise Linsdotter","last_name":"Götberg","orcid":"0000-0002-6960-6911","full_name":"Götberg, Ylva Louise Linsdotter","id":"d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d"},{"full_name":"Trani, Alessandro A.","first_name":"Alessandro A.","last_name":"Trani"},{"last_name":"Korol","first_name":"Valeriya","full_name":"Korol, Valeriya"},{"last_name":"Cuadra","first_name":"Jorge","full_name":"Cuadra, Jorge"}],"external_id":{"arxiv":["2410.19695"],"isi":["001400731500001"]},"department":[{"_id":"YlGo"},{"_id":"LiBu"}],"PlanS_conform":"1","oa_version":"Published Version","_id":"18984","project":[{"name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"ec_funded":1,"oa":1,"page":"285-292","article_type":"original","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"file":[{"file_name":"2025_MonthlyNoticesRAS_Xing.pdf","relation":"main_file","content_type":"application/pdf","file_id":"20881","date_updated":"2025-12-30T07:24:34Z","file_size":2974244,"access_level":"open_access","checksum":"49fb4fe69f487d36169ccea60acbeccc","date_created":"2025-12-30T07:24:34Z","success":1,"creator":"dernst"}],"publication_status":"published","volume":537,"year":"2025","date_updated":"2025-12-30T07:25:37Z","file_date_updated":"2025-12-30T07:24:34Z"},{"intvolume":"       387","date_published":"2025-01-17T00:00:00Z","citation":{"mla":"Chen, Liangzhi, et al. “Global Increase in the Occurrence and Impact of Multiyear Droughts.” <i>Science</i>, vol. 387, no. 6731, AAAS, 2025, pp. 278–84, doi:<a href=\"https://doi.org/10.1126/science.ado4245\">10.1126/science.ado4245</a>.","chicago":"Chen, Liangzhi, Philipp Brun, Pascal Buri, Simone Fatichi, Arthur Gessler, Michael McCarthy, Francesca Pellicciotti, Benjamin Stocker, and Dirk Nikolaus Karger. “Global Increase in the Occurrence and Impact of Multiyear Droughts.” <i>Science</i>. AAAS, 2025. <a href=\"https://doi.org/10.1126/science.ado4245\">https://doi.org/10.1126/science.ado4245</a>.","ieee":"L. Chen <i>et al.</i>, “Global increase in the occurrence and impact of multiyear droughts,” <i>Science</i>, vol. 387, no. 6731. AAAS, pp. 278–284, 2025.","ama":"Chen L, Brun P, Buri P, et al. Global increase in the occurrence and impact of multiyear droughts. <i>Science</i>. 2025;387(6731):278-284. doi:<a href=\"https://doi.org/10.1126/science.ado4245\">10.1126/science.ado4245</a>","short":"L. Chen, P. Brun, P. Buri, S. Fatichi, A. Gessler, M. McCarthy, F. Pellicciotti, B. Stocker, D.N. Karger, Science 387 (2025) 278–284.","ista":"Chen L, Brun P, Buri P, Fatichi S, Gessler A, McCarthy M, Pellicciotti F, Stocker B, Karger DN. 2025. Global increase in the occurrence and impact of multiyear droughts. Science. 387(6731), 278–284.","apa":"Chen, L., Brun, P., Buri, P., Fatichi, S., Gessler, A., McCarthy, M., … Karger, D. N. (2025). Global increase in the occurrence and impact of multiyear droughts. <i>Science</i>. AAAS. <a href=\"https://doi.org/10.1126/science.ado4245\">https://doi.org/10.1126/science.ado4245</a>"},"article_processing_charge":"No","quality_controlled":"1","publication":"Science","month":"01","pmid":1,"language":[{"iso":"eng"}],"publisher":"AAAS","OA_type":"closed access","title":"Global increase in the occurrence and impact of multiyear droughts","issue":"6731","publication_identifier":{"eissn":["1095-9203"]},"scopus_import":"1","doi":"10.1126/science.ado4245","date_created":"2025-02-02T23:01:54Z","status":"public","type":"journal_article","day":"17","acknowledgement":"This study received support from the Extremes Research Program funded by the Swiss Federal Institute for Forest, Snow and Landscape Research (WSL) within the EMERGE project of the Extremes program.","oa_version":"None","_id":"18985","page":"278-284","article_type":"original","abstract":[{"lang":"eng","text":"Persistent multiyear drought (MYD) events pose a growing threat to nature and humans in a changing climate. We identified and inventoried global MYDs by detecting spatiotemporally contiguous climatic anomalies, showing that MYDs have become drier, hotter, and led to increasingly diminished vegetation greenness. The global terrestrial land affected by MYDs has increased at a rate of 49,279 ± 14,771 square kilometers per year from 1980 to 2018. Temperate grasslands have exhibited the greatest declines in vegetation greenness during MYDs, whereas boreal and tropical forests have had comparably minor responses. With MYDs becoming more common, this global quantitative inventory of the occurrence, severity, trend, and impact of MYDs provides an important benchmark for facilitating more effective and collaborative preparedness toward mitigation of and adaptation to such extreme events."}],"author":[{"last_name":"Chen","first_name":"Liangzhi","full_name":"Chen, Liangzhi"},{"last_name":"Brun","first_name":"Philipp","full_name":"Brun, Philipp"},{"last_name":"Buri","first_name":"Pascal","id":"317987aa-9421-11ee-ac5a-b941b041abba","full_name":"Buri, Pascal"},{"last_name":"Fatichi","first_name":"Simone","full_name":"Fatichi, Simone"},{"full_name":"Gessler, Arthur","last_name":"Gessler","first_name":"Arthur"},{"id":"22a2674a-61ce-11ee-94b5-d18813baf16f","full_name":"Mccarthy, Michael","last_name":"Mccarthy","first_name":"Michael"},{"full_name":"Pellicciotti, Francesca","orcid":"0000-0002-5554-8087","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","last_name":"Pellicciotti"},{"full_name":"Stocker, Benjamin","first_name":"Benjamin","last_name":"Stocker"},{"first_name":"Dirk Nikolaus","last_name":"Karger","full_name":"Karger, Dirk Nikolaus"}],"external_id":{"pmid":["39818908"],"isi":["001491931700027"]},"department":[{"_id":"FrPe"}],"date_updated":"2025-09-30T10:24:34Z","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication_status":"published","volume":387,"year":"2025"},{"acknowledgement":"J.B., F.C., and Y.X. were funded by the European Union (ERC, CHORAL, Project No. 101039794). Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. M.M. was supported by the 2019 Lopez-Loreta Prize. J.B. acknowledges discussions with TianQi Hou at the initial stage of the project, as well as with Antoine Bodin.","DOAJ_listed":"1","day":"22","type":"journal_article","status":"public","has_accepted_license":"1","doi":"10.1103/PhysRevResearch.7.013081","arxiv":1,"date_created":"2025-02-02T23:01:54Z","scopus_import":"1","publication_identifier":{"issn":["2643-1564"]},"ddc":["530"],"title":"Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise","OA_type":"gold","OA_place":"publisher","publisher":"American Physical Society","language":[{"iso":"eng"}],"month":"01","publication":"Physical Review Research","quality_controlled":"1","article_processing_charge":"Yes","citation":{"short":"J. Barbier, F. Camilli, Y. Xu, M. Mondelli, Physical Review Research 7 (2025).","apa":"Barbier, J., Camilli, F., Xu, Y., &#38; Mondelli, M. (2025). Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevResearch.7.013081\">https://doi.org/10.1103/PhysRevResearch.7.013081</a>","ista":"Barbier J, Camilli F, Xu Y, Mondelli M. 2025. Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise. Physical Review Research. 7, 013081.","mla":"Barbier, Jean, et al. “Information Limits and Thouless-Anderson-Palmer Equations for Spiked Matrix Models with Structured Noise.” <i>Physical Review Research</i>, vol. 7, 013081, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.7.013081\">10.1103/PhysRevResearch.7.013081</a>.","ama":"Barbier J, Camilli F, Xu Y, Mondelli M. Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise. <i>Physical Review Research</i>. 2025;7. doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.7.013081\">10.1103/PhysRevResearch.7.013081</a>","ieee":"J. Barbier, F. Camilli, Y. Xu, and M. Mondelli, “Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise,” <i>Physical Review Research</i>, vol. 7. American Physical Society, 2025.","chicago":"Barbier, Jean, Francesco Camilli, Yizhou Xu, and Marco Mondelli. “Information Limits and Thouless-Anderson-Palmer Equations for Spiked Matrix Models with Structured Noise.” <i>Physical Review Research</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/PhysRevResearch.7.013081\">https://doi.org/10.1103/PhysRevResearch.7.013081</a>."},"date_published":"2025-01-22T00:00:00Z","intvolume":"         7","article_number":"013081","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"year":"2025","volume":7,"APC_amount":"3272,21 EUR","publication_status":"published","related_material":{"link":[{"relation":"software","url":"https://github.com/xu-yz19/spiked-matrix-models-with-structured-noise"}]},"file":[{"file_name":"2025_PhysReviewResearch_Barbier.pdf","date_updated":"2025-02-03T08:27:59Z","file_size":702543,"file_id":"18988","content_type":"application/pdf","relation":"main_file","access_level":"open_access","creator":"dernst","success":1,"date_created":"2025-02-03T08:27:59Z","checksum":"52c5f72d80ffc928542469114fcdb62b"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2025-02-03T08:27:59Z","date_updated":"2026-05-06T12:57:36Z","department":[{"_id":"MaMo"}],"external_id":{"arxiv":["2405.20993"]},"author":[{"first_name":"Jean","last_name":"Barbier","full_name":"Barbier, Jean"},{"full_name":"Camilli, Francesco","last_name":"Camilli","first_name":"Francesco"},{"full_name":"Xu, Yizhou","first_name":"Yizhou","last_name":"Xu"},{"orcid":"0000-0002-3242-7020","full_name":"Mondelli, Marco","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco","last_name":"Mondelli"}],"abstract":[{"text":"We consider a prototypical problem of Bayesian inference for a structured spiked model: a low-rank signal is corrupted by additive noise. While both information-theoretic and algorithmic limits are well understood when the noise is a Gaussian Wigner matrix, the more realistic case of structured noise still remains challenging. To capture the structure while maintaining mathematical tractability, a line of work has focused on rotationally invariant noise. However, existing studies either provide suboptimal algorithms or are limited to a special class of noise ensembles. In this paper, using tools from statistical physics (replica method) and random matrix theory (generalized spherical integrals) we establish the characterization of the information-theoretic limits for a noise matrix drawn from a general trace ensemble. Remarkably, our analysis unveils the asymptotic equivalence between the rotationally invariant model and a surrogate Gaussian one. Finally, we show how to saturate the predicted statistical limits using an efficient algorithm inspired by the theory of adaptive Thouless-Anderson-Palmer (TAP) equations.","lang":"eng"}],"article_type":"original","oa":1,"project":[{"name":"Prix Lopez-Loretta 2019 - Marco Mondelli","_id":"059876FA-7A3F-11EA-A408-12923DDC885E"}],"_id":"18986","oa_version":"Published Version"},{"abstract":[{"text":"Biallelic variants in NADH (nicotinamide adenine dinucleotide (NAD) + hydrogen (H))-ubiquinone oxidoreductase 1 alpha subcomplex 13 have been linked to mitochondrial complex I deficiency, nuclear type 28, based on three affected individuals from two families. With only two families reported, the clinical and molecular spectrum of NADH-ubiquinone oxidoreductase 1 alpha subcomplex 13–related diseases remains unclear. We report 10 additional affected individuals from nine independent families, identifying four missense variants (including recurrent c.170G > A) and three ultra-rare or novel predicted loss-of-function biallelic variants. Updated clinical–radiological data from previously reported families and a literature review compiling clinical features of all reported patients with isolated complex I deficiency caused by 43 genes encoding complex I subunits and assembly factors are also provided. Our cohort (mean age 7.8 ± 5.4 years; range 2.5–18) predominantly presented a moderate-to-severe neurodevelopmental syndrome with oculomotor abnormalities (84%), spasticity/hypertonia (83%), hypotonia (69%), cerebellar ataxia (66%), movement disorders (58%) and epilepsy (46%). Neuroimaging revealed bilateral symmetric T2 hyperintense substantia nigra lesions (91.6%) and optic nerve atrophy (66.6%). Protein modeling suggests missense variants destabilize a critical junction between the hydrophilic and membrane arms of complex I. Fibroblasts from two patients showed reduced complex I activity and compensatory complex IV activity increase. This study characterizes NADH-ubiquinone oxidoreductase 1 alpha subcomplex 13–related disease in 13 individuals, highlighting genotype–phenotype correlations.","lang":"eng"}],"author":[{"full_name":"Kaiyrzhanov, Rauan","first_name":"Rauan","last_name":"Kaiyrzhanov"},{"first_name":"Kyle","last_name":"Thompson","full_name":"Thompson, Kyle"},{"last_name":"Efthymiou","first_name":"Stephanie","full_name":"Efthymiou, Stephanie"},{"first_name":"Askhat","last_name":"Mukushev","full_name":"Mukushev, Askhat"},{"last_name":"Zharylkassyn","first_name":"Akbota","full_name":"Zharylkassyn, Akbota"},{"last_name":"Prasad","first_name":"Chitra","full_name":"Prasad, Chitra"},{"last_name":"Karimiani","first_name":"Ehsan Ghayoor","full_name":"Karimiani, Ehsan Ghayoor"},{"first_name":"Javeria Raza","last_name":"Alvi","full_name":"Alvi, Javeria Raza"},{"last_name":"Niyazov","first_name":"Dmitriy","full_name":"Niyazov, Dmitriy"},{"first_name":"Ahmad","last_name":"Alahmad","full_name":"Alahmad, Ahmad"},{"last_name":"Babaei","first_name":"Meisam","full_name":"Babaei, Meisam"},{"full_name":"Tajsharghi, Homa","first_name":"Homa","last_name":"Tajsharghi"},{"full_name":"Albash, Buthaina","last_name":"Albash","first_name":"Buthaina"},{"last_name":"Alaqeel","first_name":"Ahmad","full_name":"Alaqeel, Ahmad"},{"full_name":"Charif, Majida","last_name":"Charif","first_name":"Majida"},{"full_name":"Hashemi, Narges","first_name":"Narges","last_name":"Hashemi"},{"full_name":"Heidari, Morteza","first_name":"Morteza","last_name":"Heidari"},{"last_name":"Kalantar","first_name":"Seyed Mehdi","full_name":"Kalantar, Seyed Mehdi"},{"last_name":"Lenaers","first_name":"Guy","full_name":"Lenaers, Guy"},{"last_name":"Mehrjardi","first_name":"Mohammad Yahya Vahidi","full_name":"Mehrjardi, Mohammad Yahya Vahidi"},{"full_name":"Srinivasan, Varunvenkat M.","first_name":"Varunvenkat M.","last_name":"Srinivasan"},{"full_name":"Gowda, Vykuntaraju K.","first_name":"Vykuntaraju K.","last_name":"Gowda"},{"full_name":"Mirabutalebi, Seyed Hamidreza","first_name":"Seyed Hamidreza","last_name":"Mirabutalebi"},{"full_name":"Carere, Deanna Alexis","last_name":"Carere","first_name":"Deanna Alexis"},{"full_name":"Movahedinia, Mojtaba","first_name":"Mojtaba","last_name":"Movahedinia"},{"full_name":"Murphy, David","first_name":"David","last_name":"Murphy"},{"full_name":"Mcfarland, Robert","first_name":"Robert","last_name":"Mcfarland"},{"last_name":"Abdel-Hamid","first_name":"Mohamed S.","full_name":"Abdel-Hamid, Mohamed S."},{"full_name":"Elhossini, Rasha M.","first_name":"Rasha M.","last_name":"Elhossini"},{"full_name":"Alavi, Shahryar","first_name":"Shahryar","last_name":"Alavi"},{"last_name":"Napier","first_name":"Melanie","full_name":"Napier, Melanie"},{"last_name":"Belanger-Quintana","first_name":"Amaya","full_name":"Belanger-Quintana, Amaya"},{"full_name":"Prasad, Asuri N.","first_name":"Asuri N.","last_name":"Prasad"},{"last_name":"Jakobczyk","first_name":"Jessica","full_name":"Jakobczyk, Jessica"},{"first_name":"Agathe","last_name":"Roubertie","full_name":"Roubertie, Agathe"},{"full_name":"Rupar, Tony","last_name":"Rupar","first_name":"Tony"},{"full_name":"Sultan, Tipu","first_name":"Tipu","last_name":"Sultan"},{"full_name":"Toosi, Mehran Beiraghi","last_name":"Toosi","first_name":"Mehran Beiraghi"},{"first_name":"Leonid A","last_name":"Sazanov","orcid":"0000-0002-0977-7989","full_name":"Sazanov, Leonid A","id":"338D39FE-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Severino","first_name":"Mariasavina","full_name":"Severino, Mariasavina"},{"last_name":"Houlden","first_name":"Henry","full_name":"Houlden, Henry"},{"full_name":"Taylor, Robert W.","last_name":"Taylor","first_name":"Robert W."},{"full_name":"Maroofian, Reza","last_name":"Maroofian","first_name":"Reza"}],"external_id":{"pmid":["39963288"]},"department":[{"_id":"LeSa"}],"PlanS_conform":"1","oa_version":"Published Version","_id":"18987","oa":1,"article_type":"original","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"success":1,"creator":"dernst","checksum":"bdf39b64d1c1d833a20b62836751fe44","date_created":"2025-08-05T11:54:23Z","access_level":"open_access","file_size":1420646,"date_updated":"2025-08-05T11:54:23Z","relation":"main_file","file_id":"20126","content_type":"application/pdf","file_name":"2025_BrainComm_Kaiyrzhanov.pdf"}],"publication_status":"published","volume":7,"year":"2025","date_updated":"2025-08-05T11:55:15Z","file_date_updated":"2025-08-05T11:54:23Z","article_processing_charge":"Yes","quality_controlled":"1","publication":"Brain Communications","month":"01","pmid":1,"language":[{"iso":"eng"}],"publisher":"Oxford University Press","OA_place":"publisher","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_number":"fcae453","intvolume":"         7","date_published":"2025-01-01T00:00:00Z","citation":{"ama":"Kaiyrzhanov R, Thompson K, Efthymiou S, et al. Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. <i>Brain Communications</i>. 2025;7(1). doi:<a href=\"https://doi.org/10.1093/braincomms/fcae453\">10.1093/braincomms/fcae453</a>","ieee":"R. Kaiyrzhanov <i>et al.</i>, “Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment,” <i>Brain Communications</i>, vol. 7, no. 1. Oxford University Press, 2025.","chicago":"Kaiyrzhanov, Rauan, Kyle Thompson, Stephanie Efthymiou, Askhat Mukushev, Akbota Zharylkassyn, Chitra Prasad, Ehsan Ghayoor Karimiani, et al. “Biallelic NDUFA13 Variants Lead to a Neurodevelopmental Phenotype with Gradual Neurological Impairment.” <i>Brain Communications</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/braincomms/fcae453\">https://doi.org/10.1093/braincomms/fcae453</a>.","mla":"Kaiyrzhanov, Rauan, et al. “Biallelic NDUFA13 Variants Lead to a Neurodevelopmental Phenotype with Gradual Neurological Impairment.” <i>Brain Communications</i>, vol. 7, no. 1, fcae453, Oxford University Press, 2025, doi:<a href=\"https://doi.org/10.1093/braincomms/fcae453\">10.1093/braincomms/fcae453</a>.","ista":"Kaiyrzhanov R, Thompson K, Efthymiou S, Mukushev A, Zharylkassyn A, Prasad C, Karimiani EG, Alvi JR, Niyazov D, Alahmad A, Babaei M, Tajsharghi H, Albash B, Alaqeel A, Charif M, Hashemi N, Heidari M, Kalantar SM, Lenaers G, Mehrjardi MYV, Srinivasan VM, Gowda VK, Mirabutalebi SH, Carere DA, Movahedinia M, Murphy D, Mcfarland R, Abdel-Hamid MS, Elhossini RM, Alavi S, Napier M, Belanger-Quintana A, Prasad AN, Jakobczyk J, Roubertie A, Rupar T, Sultan T, Toosi MB, Sazanov LA, Severino M, Houlden H, Taylor RW, Maroofian R. 2025. Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. Brain Communications. 7(1), fcae453.","apa":"Kaiyrzhanov, R., Thompson, K., Efthymiou, S., Mukushev, A., Zharylkassyn, A., Prasad, C., … Maroofian, R. (2025). Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. <i>Brain Communications</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/braincomms/fcae453\">https://doi.org/10.1093/braincomms/fcae453</a>","short":"R. Kaiyrzhanov, K. Thompson, S. Efthymiou, A. Mukushev, A. Zharylkassyn, C. Prasad, E.G. Karimiani, J.R. Alvi, D. Niyazov, A. Alahmad, M. Babaei, H. Tajsharghi, B. Albash, A. Alaqeel, M. Charif, N. Hashemi, M. Heidari, S.M. Kalantar, G. Lenaers, M.Y.V. Mehrjardi, V.M. Srinivasan, V.K. Gowda, S.H. Mirabutalebi, D.A. Carere, M. Movahedinia, D. Murphy, R. Mcfarland, M.S. Abdel-Hamid, R.M. Elhossini, S. Alavi, M. Napier, A. Belanger-Quintana, A.N. Prasad, J. Jakobczyk, A. Roubertie, T. Rupar, T. Sultan, M.B. Toosi, L.A. Sazanov, M. Severino, H. Houlden, R.W. Taylor, R. Maroofian, Brain Communications 7 (2025)."},"date_created":"2025-02-02T23:01:55Z","doi":"10.1093/braincomms/fcae453","status":"public","has_accepted_license":"1","day":"01","type":"journal_article","DOAJ_listed":"1","acknowledgement":"We thank all individuals and relatives for consent to be part of the study. Families 1–4, 7, were collected as part of the SYNaPS Study Group collaboration funded by The Wellcome Trust and strategic award (Synaptopathies) funding (WT093205 MA and WT104033AIA), and research was conducted as part of the Queen Square Genomics group at the University College London, supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre. We are also grateful to Queen Square Genomics at the Institute of Neurology University College London, supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre, for the bioinformatics support. For the purpose of Open Access, the author has applied a CC BY public copyright license to any Author Accepted Manuscript version arising from this submission.\r\nThis study was funded by the Medical Research Council (MR/S01165X/1, MR/S005021/1, G0601943). The Medical Research Council (MR/S01165X/1, MR/S005021/1, MRC ICGNMD), Wellcome Trust 221951/Z/20/Z, Global Parkinson’s Genetics Program, Aligning Science Across Parkinson’s, The Michael J. Fox Foundation, The National Institute for Health Research University College London Hospitals Biomedical Research Centre, Rosetree Trust, Multiple System Atrophy Trust, Brain Research UK, Sparks Great Ormond Street Hospital Charity, Muscular Dystrophy, Muscular Dystrophy Association United States of America, and King Baudouin Foundation. H.T. was supported by the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 608473. M.S.A.-H. is funded by the Science and Technology Development Fund Academy of Science Research and Technology Egypt (Grant number: 33492, Ethical approval number: 20066). R.W.T. is funded by the Wellcome Centre for Mitochondrial Research (203105/Z/16/Z), the Mitochondrial Disease Patient Cohort (UK) (G0800674), the Medical Research Council International Centre for Genomic Medicine in Neuromuscular Disease (MR/S005021/1), the Medical Research Council (MR/W019027/1), the Lily Foundation, Mito Foundation, the Pathological Society, LifeArc, the UK National Institute for Health Research Biomedical Research Centre for Ageing and Age-related disease award to the Newcastle upon Tyne Foundation Hospitals NHS Trust and the UK NHS Highly Specialised Service for Rare Mitochondrial Disorders of Adults and Children. H.H. and R.K. are supported by Global Parkinson’s Genetic Program and The Michael J. Fox Foundation Grant ID: MJFF-022153.","OA_type":"gold","issue":"1","title":"Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment","ddc":["570"],"scopus_import":"1","publication_identifier":{"eissn":["2632-1297"]}},{"department":[{"_id":"GradSch"},{"_id":"JoCs"},{"_id":"GaTk"}],"author":[{"first_name":"Heloisa","last_name":"Chiossi","orcid":"0009-0004-2973-278X","full_name":"Chiossi, Heloisa","id":"2BBA502C-F248-11E8-B48F-1D18A9856A87"}],"abstract":[{"text":"Research data for the article \"Learning reshapes the hippocampal representation hierarchy\" from Chiossi et al. (PNAS, 2025). The data includes hippocampal CA1 unit activity and behaviour tracking of 5 Long Evans rats during the learning of an associative memory task. Detailed information can be found in the 'readme.txt' file.","lang":"eng"}],"acknowledged_ssus":[{"_id":"PreCl"},{"_id":"M-Shop"}],"oa":1,"_id":"18991","oa_version":"Published Version","year":"2025","file":[{"content_type":"application/zip","file_id":"18992","relation":"main_file","file_size":769383201,"date_updated":"2025-02-04T10:16:52Z","file_name":"Chiossi_etal_2025_PNAS_data.zip","date_created":"2025-02-04T10:16:52Z","checksum":"04d761ed42e8879abffde04a560409ce","creator":"hchiossi","success":1,"access_level":"open_access"},{"file_name":"readme.txt","file_id":"18993","content_type":"text/plain","relation":"main_file","file_size":3215,"date_updated":"2025-02-04T10:18:33Z","access_level":"open_access","date_created":"2025-02-04T10:18:33Z","checksum":"50602931dcd33e4f009ed46af11335f3","creator":"hchiossi","success":1}],"related_material":{"record":[{"id":"19453","relation":"used_in_publication","status":"public"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2025-02-04T10:18:33Z","date_updated":"2026-05-06T13:12:00Z","keyword":["hippocampus","electrophysiology","behavior"],"publisher":"Institute of Science and Technology Austria","OA_place":"repository","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","month":"02","article_processing_charge":"No","date_published":"2025-02-04T00:00:00Z","citation":{"ama":"Chiossi HSC. Research data for the publication “Learning reshapes the hippocampal representation hierarchy.” 2025. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:18991\">10.15479/AT:ISTA:18991</a>","chicago":"Chiossi, Heloisa S. C. “Research Data for the Publication ‘Learning Reshapes the Hippocampal Representation Hierarchy.’” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/AT:ISTA:18991\">https://doi.org/10.15479/AT:ISTA:18991</a>.","ieee":"H. S. C. Chiossi, “Research data for the publication ‘Learning reshapes the hippocampal representation hierarchy.’” Institute of Science and Technology Austria, 2025.","mla":"Chiossi, Heloisa S. C. <i>Research Data for the Publication “Learning Reshapes the Hippocampal Representation Hierarchy.”</i> Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:18991\">10.15479/AT:ISTA:18991</a>.","ista":"Chiossi HSC. 2025. Research data for the publication ‘Learning reshapes the hippocampal representation hierarchy’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:18991\">10.15479/AT:ISTA:18991</a>.","apa":"Chiossi, H. S. C. (2025). Research data for the publication “Learning reshapes the hippocampal representation hierarchy.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:18991\">https://doi.org/10.15479/AT:ISTA:18991</a>","short":"H.S.C. Chiossi, (2025)."},"contributor":[{"last_name":"Nardin","contributor_type":"researcher","first_name":"Michele","id":"30BD0376-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8849-6570"},{"last_name":"Tkačik","contributor_type":"supervisor","first_name":"Gašper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6699-1455"},{"first_name":"Jozsef L","contributor_type":"supervisor","last_name":"Csicsvari","orcid":"0000-0002-5193-4036","id":"3FA14672-F248-11E8-B48F-1D18A9856A87"}],"tmp":{"short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png"},"acknowledgement":"Thanks to Rebecca Morse for performing one of the experiments under H.S.C.C. supervision and Jago Wallenschus for technical support, especially with maze design.","day":"04","type":"research_data","status":"public","has_accepted_license":"1","date_created":"2025-02-04T10:36:18Z","doi":"10.15479/AT:ISTA:18991","corr_author":"1","ddc":["570"],"OA_type":"gold","title":"Research data for the publication \"Learning reshapes the hippocampal representation hierarchy\""},{"doi":"10.1007/s11005-025-01904-5","date_created":"2025-02-05T06:48:29Z","arxiv":1,"has_accepted_license":"1","status":"public","type":"journal_article","day":"30","acknowledgement":"We thank Giorgio Cipolloni for helpful discussions in a closely related joint project. Open access funding provided by Institute of Science and Technology (IST Austria). All authors were supported by the ERC Advanced Grant “RMTBeyond” No. 101020331.","OA_type":"hybrid","title":"Loschmidt echo for deformed Wigner matrices","ddc":["510"],"corr_author":"1","publication_identifier":{"issn":["1573-0530"]},"scopus_import":"1","article_processing_charge":"Yes (via OA deal)","quality_controlled":"1","publication":"Letters in Mathematical Physics","month":"01","pmid":1,"language":[{"iso":"eng"}],"OA_place":"publisher","publisher":"Springer Nature","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_number":"14","intvolume":"       115","date_published":"2025-01-30T00:00:00Z","citation":{"apa":"Erdös, L., Henheik, S. J., &#38; Kolupaiev, O. (2025). Loschmidt echo for deformed Wigner matrices. <i>Letters in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11005-025-01904-5\">https://doi.org/10.1007/s11005-025-01904-5</a>","ista":"Erdös L, Henheik SJ, Kolupaiev O. 2025. Loschmidt echo for deformed Wigner matrices. Letters in Mathematical Physics. 115, 14.","short":"L. Erdös, S.J. Henheik, O. Kolupaiev, Letters in Mathematical Physics 115 (2025).","ama":"Erdös L, Henheik SJ, Kolupaiev O. Loschmidt echo for deformed Wigner matrices. <i>Letters in Mathematical Physics</i>. 2025;115. doi:<a href=\"https://doi.org/10.1007/s11005-025-01904-5\">10.1007/s11005-025-01904-5</a>","ieee":"L. Erdös, S. J. Henheik, and O. Kolupaiev, “Loschmidt echo for deformed Wigner matrices,” <i>Letters in Mathematical Physics</i>, vol. 115. Springer Nature, 2025.","chicago":"Erdös, László, Sven Joscha Henheik, and Oleksii Kolupaiev. “Loschmidt Echo for Deformed Wigner Matrices.” <i>Letters in Mathematical Physics</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s11005-025-01904-5\">https://doi.org/10.1007/s11005-025-01904-5</a>.","mla":"Erdös, László, et al. “Loschmidt Echo for Deformed Wigner Matrices.” <i>Letters in Mathematical Physics</i>, vol. 115, 14, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1007/s11005-025-01904-5\">10.1007/s11005-025-01904-5</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"file":[{"file_name":"2025_LettersMathPhysics_Erdoes.pdf","relation":"main_file","file_id":"19004","content_type":"application/pdf","file_size":828335,"date_updated":"2025-02-05T07:01:40Z","access_level":"open_access","checksum":"ee07edf5f85a6f2651926b2f8760af74","date_created":"2025-02-05T07:01:40Z","success":1,"creator":"dernst"}],"related_material":{"record":[{"id":"19540","relation":"dissertation_contains","status":"public"}]},"publication_status":"published","volume":115,"year":"2025","date_updated":"2026-04-07T12:37:10Z","file_date_updated":"2025-02-05T07:01:40Z","abstract":[{"lang":"eng","text":"We consider two Hamiltonians that are close to each other, H1≈H2, and analyze the time-decay of the corresponding Loschmidt echo M(t):=|⟨ψ0,eitH2e−itH1ψ0⟩|2 that expresses the effect of an imperfect time reversal on the initial state ψ0. Our model Hamiltonians are deformed Wigner matrices that do not share a common eigenbasis. The main tools for our results are two-resolvent laws for such H1 and H2."}],"author":[{"id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","full_name":"Erdös, László","orcid":"0000-0001-5366-9603","last_name":"Erdös","first_name":"László"},{"orcid":"0000-0003-1106-327X","full_name":"Henheik, Sven Joscha","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","first_name":"Sven Joscha","last_name":"Henheik"},{"last_name":"Kolupaiev","first_name":"Oleksii","id":"149b70d4-896a-11ed-bdf8-8c63fd44ca61","full_name":"Kolupaiev, Oleksii","orcid":"0000-0003-1491-4623"}],"external_id":{"pmid":["39896265"],"arxiv":["2410.08108"],"isi":["001409618800002"]},"department":[{"_id":"LaEr"}],"oa_version":"Published Version","ec_funded":1,"_id":"19001","project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020","_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331"}],"oa":1,"article_type":"original"},{"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"intvolume":"       348","article_number":"114377","date_published":"2025-04-01T00:00:00Z","citation":{"short":"P.P. Cortés, P. Kumar, B. Moore, P. Ossona de Mendez, D.A. Quiroz, Discrete Mathematics 348 (2025).","apa":"Cortés, P. P., Kumar, P., Moore, B., Ossona de Mendez, P., &#38; Quiroz, D. A. (2025). Subchromatic numbers of powers of graphs with excluded minors. <i>Discrete Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.disc.2024.114377\">https://doi.org/10.1016/j.disc.2024.114377</a>","ista":"Cortés PP, Kumar P, Moore B, Ossona de Mendez P, Quiroz DA. 2025. Subchromatic numbers of powers of graphs with excluded minors. Discrete Mathematics. 348(4), 114377.","mla":"Cortés, Pedro P., et al. “Subchromatic Numbers of Powers of Graphs with Excluded Minors.” <i>Discrete Mathematics</i>, vol. 348, no. 4, 114377, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.disc.2024.114377\">10.1016/j.disc.2024.114377</a>.","ama":"Cortés PP, Kumar P, Moore B, Ossona de Mendez P, Quiroz DA. Subchromatic numbers of powers of graphs with excluded minors. <i>Discrete Mathematics</i>. 2025;348(4). doi:<a href=\"https://doi.org/10.1016/j.disc.2024.114377\">10.1016/j.disc.2024.114377</a>","chicago":"Cortés, Pedro P., Pankaj Kumar, Benjamin Moore, Patrice Ossona de Mendez, and Daniel A. Quiroz. “Subchromatic Numbers of Powers of Graphs with Excluded Minors.” <i>Discrete Mathematics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.disc.2024.114377\">https://doi.org/10.1016/j.disc.2024.114377</a>.","ieee":"P. P. Cortés, P. Kumar, B. Moore, P. Ossona de Mendez, and D. A. Quiroz, “Subchromatic numbers of powers of graphs with excluded minors,” <i>Discrete Mathematics</i>, vol. 348, no. 4. Elsevier, 2025."},"article_processing_charge":"Yes (via OA deal)","quality_controlled":"1","publication":"Discrete Mathematics","month":"04","language":[{"iso":"eng"}],"OA_place":"publisher","publisher":"Elsevier","OA_type":"hybrid","issue":"4","title":"Subchromatic numbers of powers of graphs with excluded minors","ddc":["510"],"corr_author":"1","publication_identifier":{"issn":["0012-365X"]},"scopus_import":"1","date_created":"2025-02-05T06:51:08Z","doi":"10.1016/j.disc.2024.114377","arxiv":1,"has_accepted_license":"1","status":"public","type":"journal_article","day":"01","acknowledgement":"We thank an anonymous referee for pointing out an error in an earlier version of Theorem 3.1. We also thank an anonymous referee for pointing out numerous typos in an earlier version of the paper.","oa_version":"Published Version","_id":"19002","oa":1,"article_type":"original","abstract":[{"text":"A k-subcolouring of a graph G is a function f : V (G) → {0,...,k − 1} such that the set of\r\nvertices coloured i induce a disjoint union of cliques. The subchromatic number, χsub(G),\r\nis the minimum k such that G admits a k-subcolouring. Nešetril, ˇ Ossona de Mendez,\r\nPilipczuk, and Zhu (2020), recently raised the problem of finding tight upper bounds for\r\nχsub(G2) when G is planar. We show that χsub(G2) ≤ 43 when G is planar, improving\r\ntheir bound of 135. We give even better bounds when the planar graph G has larger girth.\r\nMoreover, we show that χsub(G3) ≤ 95, improving the previous bound of 364. For these\r\nwe adapt some recent techniques of Almulhim and Kierstead (2022), while also extending\r\nthe decompositions of triangulated planar graphs of Van den Heuvel, Ossona de Mendez,\r\nQuiroz, Rabinovich and Siebertz (2017), to planar graphs of arbitrary girth. Note that these\r\ndecompositions are the precursors of the graph product structure theorem of planar graphs.\r\nWe give improved bounds for χsub(Gp) for all p ≥ 2, whenever G has bounded treewidth,\r\nbounded simple treewidth, bounded genus, or excludes a clique or biclique as a minor.\r\nFor this we introduce a family of parameters which form a gradation between the strong\r\nand the weak colouring numbers. We give upper bounds for these parameters for graphs\r\ncoming from such classes.\r\nFinally, we give a 2-approximation algorithm for the subchromatic number of graphs\r\nhaving a layering in which each layer has bounded cliquewidth and this layering is\r\ncomputable in polynomial time (like the class of all dth powers of planar graphs, for fixed\r\nd). This algorithm works even if the power p and the graph G is unknown.","lang":"eng"}],"author":[{"first_name":"Pedro P.","last_name":"Cortés","full_name":"Cortés, Pedro P."},{"full_name":"Kumar, Pankaj","last_name":"Kumar","first_name":"Pankaj"},{"last_name":"Moore","first_name":"Benjamin","id":"6dc1a1be-bf1c-11ed-8d2b-d044840f49d6","full_name":"Moore, Benjamin"},{"full_name":"Ossona de Mendez, Patrice","first_name":"Patrice","last_name":"Ossona de Mendez"},{"full_name":"Quiroz, Daniel A.","first_name":"Daniel A.","last_name":"Quiroz"}],"external_id":{"arxiv":["2306.02195"],"isi":["001401656900001"]},"department":[{"_id":"MaKw"}],"date_updated":"2025-09-30T10:25:15Z","file_date_updated":"2025-05-05T12:56:12Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","isi":1,"file":[{"file_size":850988,"date_updated":"2025-05-05T12:56:12Z","relation":"main_file","file_id":"19657","content_type":"application/pdf","file_name":"2025_DiscreteMath_Cortes.pdf","success":1,"creator":"dernst","checksum":"6723cbb02b6aea0d05f37d167da00c03","date_created":"2025-05-05T12:56:12Z","access_level":"open_access"}],"publication_status":"published","volume":348,"year":"2025"},{"publication":"The Plant Cell","quality_controlled":"1","article_processing_charge":"Yes (via OA deal)","OA_place":"publisher","publisher":"Oxford University Press","language":[{"iso":"eng"}],"month":"04","pmid":1,"intvolume":"        37","article_number":"koaf006","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"citation":{"chicago":"Gallei, Michelle C, Sven M Truckenbrodt, Caroline Kreuzinger, Syamala Inumella, Vitali Vistunou, Christoph M Sommer, Mojtaba Tavakoli, et al. “Super-Resolution Expansion Microscopy in Plant Roots.” <i>The Plant Cell</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/plcell/koaf006\">https://doi.org/10.1093/plcell/koaf006</a>.","ieee":"M. C. Gallei <i>et al.</i>, “Super-resolution expansion microscopy in plant roots,” <i>The Plant Cell</i>, vol. 37, no. 4. Oxford University Press, 2025.","ama":"Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion microscopy in plant roots. <i>The Plant Cell</i>. 2025;37(4). doi:<a href=\"https://doi.org/10.1093/plcell/koaf006\">10.1093/plcell/koaf006</a>","mla":"Gallei, Michelle C., et al. “Super-Resolution Expansion Microscopy in Plant Roots.” <i>The Plant Cell</i>, vol. 37, no. 4, koaf006, Oxford University Press, 2025, doi:<a href=\"https://doi.org/10.1093/plcell/koaf006\">10.1093/plcell/koaf006</a>.","apa":"Gallei, M. C., Truckenbrodt, S. M., Kreuzinger, C., Inumella, S., Vistunou, V., Sommer, C. M., … Danzl, J. G. (2025). Super-resolution expansion microscopy in plant roots. <i>The Plant Cell</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/plcell/koaf006\">https://doi.org/10.1093/plcell/koaf006</a>","ista":"Gallei MC, Truckenbrodt SM, Kreuzinger C, Inumella S, Vistunou V, Sommer CM, Tavakoli M, Agudelo Duenas N, Vorlaufer J, Jahr W, Randuch M, Johnson AJ, Benková E, Friml J, Danzl JG. 2025. Super-resolution expansion microscopy in plant roots. The Plant Cell. 37(4), koaf006.","short":"M.C. Gallei, S.M. Truckenbrodt, C. Kreuzinger, S. Inumella, V. Vistunou, C.M. Sommer, M. Tavakoli, N. Agudelo Duenas, J. Vorlaufer, W. Jahr, M. Randuch, A.J. Johnson, E. Benková, J. Friml, J.G. Danzl, The Plant Cell 37 (2025)."},"date_published":"2025-04-01T00:00:00Z","status":"public","has_accepted_license":"1","doi":"10.1093/plcell/koaf006","date_created":"2025-02-05T06:52:06Z","acknowledgement":"We gratefully acknowledge support by the Scientific Service Units at ISTA, including the Imaging and Optics and Lab Support facilities and the mechanical workshop and Library. We thank Philipp Velicky for STED microscope alignment.\r\nThis project has received funding from the European Research Council under the Horizon 2020 Framework Programme (grant agreement No 742985, J.F.). It has also received funding from the Horizon 2020 Framework Programme under the Marie Skłodowska-Curie Grant Agreement No. 665385 (M.G.). S.T. has received funding as an ISTplus Fellow from the Horizon 2020 Framework Programme under Marie Skłodowska-Curie grant agreement no. 754411 and from EMBO via a Long-Term Fellowship (grant number ALTF 679-2018). M.R.T. received funding from the Austrian Academy of Sciences with DOC fellowship no. 26137. The project has further received funding from the Austrian Science Fund, via grant DK W1232 (M.R.T., N.A.D., and J.G.D). W.J. received a postdoctoral fellowship from the Human Frontier Science Program (LT000557/2018). The funders had no role in study design, data collection and analysis, decision to publish or preparation of the manuscript.","type":"journal_article","day":"01","issue":"4","title":"Super-resolution expansion microscopy in plant roots","OA_type":"hybrid","publication_identifier":{"eissn":["1532-298X"],"issn":["1040-4651"]},"scopus_import":"1","corr_author":"1","ddc":["580"],"external_id":{"isi":["001462763100001"],"pmid":["39792900"]},"author":[{"full_name":"Gallei, Michelle C","orcid":"0000-0003-1286-7368","id":"35A03822-F248-11E8-B48F-1D18A9856A87","first_name":"Michelle C","last_name":"Gallei"},{"first_name":"Sven M","last_name":"Truckenbrodt","full_name":"Truckenbrodt, Sven M","id":"45812BD4-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Caroline","last_name":"Kreuzinger","full_name":"Kreuzinger, Caroline","id":"382077BA-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0009-0002-5890-120X","full_name":"Inumella, Syamala","id":"F8660870-D756-11E9-98C5-34DFE5697425","first_name":"Syamala","last_name":"Inumella"},{"full_name":"Vistunou, Vitali","id":"7e146587-8972-11ed-ae7b-d7a32ea86a81","first_name":"Vitali","last_name":"Vistunou"},{"first_name":"Christoph M","last_name":"Sommer","full_name":"Sommer, Christoph M","orcid":"0000-0003-1216-9105","id":"4DF26D8C-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Mojtaba","last_name":"Tavakoli","orcid":"0000-0002-7667-6854","full_name":"Tavakoli, Mojtaba","id":"3A0A06F4-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Agudelo Duenas","first_name":"Nathalie","id":"40E7F008-F248-11E8-B48F-1D18A9856A87","full_name":"Agudelo Duenas, Nathalie"},{"last_name":"Vorlaufer","first_name":"Jakob","id":"937696FA-C996-11E9-8C7C-CF13E6697425","full_name":"Vorlaufer, Jakob","orcid":"0009-0000-7590-3501"},{"id":"425C1CE8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0201-2315","full_name":"Jahr, Wiebke","last_name":"Jahr","first_name":"Wiebke"},{"last_name":"Randuch","first_name":"Marek","id":"6ac4636d-15b2-11ec-abd3-fb8df79972ae","full_name":"Randuch, Marek"},{"id":"46A62C3A-F248-11E8-B48F-1D18A9856A87","full_name":"Johnson, Alexander J","orcid":"0000-0002-2739-8843","last_name":"Johnson","first_name":"Alexander J"},{"orcid":"0000-0002-8510-9739","full_name":"Benková, Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","last_name":"Benková"},{"first_name":"Jiří","last_name":"Friml","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G","last_name":"Danzl"}],"acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"E-Lib"},{"_id":"M-Shop"}],"abstract":[{"lang":"eng","text":"Super-resolution methods provide far better spatial resolution than the optical diffraction limit of about half the wavelength of light (∼200-300 nm). Nevertheless, they have yet to attain widespread use in plants, largely due to plants’ challenging optical properties. Expansion microscopy improves effective resolution by isotropically increasing the physical distances between sample structures while preserving relative spatial arrangements and clearing the sample. However, its application to plants has been hindered by the rigid, mechanically cohesive structure of plant tissues. Here, we report on whole-mount expansion microscopy of thale cress (Arabidopsis thaliana) root tissues (PlantEx), achieving a four-fold resolution increase over conventional microscopy. Our results highlight the microtubule cytoskeleton organization and interaction between molecularly defined cellular constituents. Combining PlantEx with stimulated emission depletion (STED) microscopy, we increase nanoscale resolution and visualize the complex organization of subcellular organelles from intact tissues by example of the densely packed COPI-coated vesicles associated with the Golgi apparatus and put these into a cellular structural context. Our results show that expansion microscopy can be applied to increase effective imaging resolution in Arabidopsis root specimens. "}],"PlanS_conform":"1","department":[{"_id":"EvBe"},{"_id":"JoDa"},{"_id":"JiFr"}],"_id":"19003","project":[{"call_identifier":"H2020","grant_number":"742985","_id":"261099A6-B435-11E9-9278-68D0E5697425","name":"Tracing Evolution of Auxin Transport and Polarity in Plants"},{"name":"International IST Doctoral Program","grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships"},{"name":"UltraX - achieving sub-nanometer resolution in light microscopy using iterative X10 microscopy in combination with nanobodies and STED","_id":"269B5B22-B435-11E9-9278-68D0E5697425","grant_number":"ALTF 679-2018"},{"name":"Studying Organelle Structure and Function at Nanoscale Resolution with Expansion Microscopy","grant_number":"26137","_id":"6285a163-2b32-11ec-9570-8e204ca2dba5"},{"call_identifier":"FWF","_id":"26AA4EF2-B435-11E9-9278-68D0E5697425","grant_number":"W1232-B24","name":"Molecular Drug Targets"}],"ec_funded":1,"oa_version":"Published Version","article_type":"original","oa":1,"related_material":{"record":[{"status":"public","relation":"earlier_version","id":"18689"},{"relation":"research_data","status":"public","id":"18837"}]},"file":[{"content_type":"application/pdf","file_id":"20092","relation":"main_file","file_size":53904111,"date_updated":"2025-07-31T07:03:43Z","file_name":"2025_PlantCell_Gallei.pdf","date_created":"2025-07-31T07:03:43Z","checksum":"9d3f8218ff37a29f29c48a7bbe831bd3","creator":"dernst","success":1,"access_level":"open_access"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"year":"2025","volume":37,"publication_status":"published","date_updated":"2026-06-10T08:30:19Z","file_date_updated":"2025-07-31T07:03:43Z"},{"status":"public","has_accepted_license":"1","arxiv":1,"date_created":"2025-02-05T09:23:25Z","acknowledgement":"We thank Jiaqi Zhang, Francesco Montagna, David Lopez-Paz, Kartik Ahuja, Thomas Kipf, Sara\r\nMagliacane, Julius von Kügelgen, Kun Zhang, and Bernhard Schölkopf for extremely helpful discussion. Riccardo Cadei was supported by a Google Research Scholar Award to Francesco Locatello. We acknowledge the Third Bellairs Workshop on Causal Representation Learning held at the Bellairs Research Institute, February 9/16, 2024, and a debate on the difference between interventions and counterfactuals in disentanglement and CRL that took place during Dhanya Sridhar’s lecture, which motivated us to significantly broaden the scope of the paper. We thank Dhanya and all participants of the workshop.","day":"22","type":"conference","OA_type":"gold","title":"Unifying causal representation learning with the invariance principle","ddc":["000"],"corr_author":"1","scopus_import":"1","publication":"13th International Conference on Learning Representations","article_processing_charge":"No","quality_controlled":"1","language":[{"iso":"eng"}],"publisher":"ICLR","OA_place":"publisher","month":"01","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"conference":{"start_date":"2025-04-24","location":"Singapore","name":"ICLR: International Conference on Learning Representations","end_date":"2025-04-28"},"date_published":"2025-01-22T00:00:00Z","citation":{"ieee":"D. Yao, D. Rancati, R. Cadei, M. Fumero, and F. Locatello, “Unifying causal representation learning with the invariance principle,” in <i>13th International Conference on Learning Representations</i>, Singapore, 2025.","chicago":"Yao, Dingling, Dario Rancati, Riccardo Cadei, Marco Fumero, and Francesco Locatello. “Unifying Causal Representation Learning with the Invariance Principle.” In <i>13th International Conference on Learning Representations</i>. ICLR, 2025.","ama":"Yao D, Rancati D, Cadei R, Fumero M, Locatello F. Unifying causal representation learning with the invariance principle. In: <i>13th International Conference on Learning Representations</i>. ICLR; 2025.","mla":"Yao, Dingling, et al. “Unifying Causal Representation Learning with the Invariance Principle.” <i>13th International Conference on Learning Representations</i>, ICLR, 2025.","ista":"Yao D, Rancati D, Cadei R, Fumero M, Locatello F. 2025. Unifying causal representation learning with the invariance principle. 13th International Conference on Learning Representations. ICLR: International Conference on Learning Representations.","apa":"Yao, D., Rancati, D., Cadei, R., Fumero, M., &#38; Locatello, F. (2025). Unifying causal representation learning with the invariance principle. In <i>13th International Conference on Learning Representations</i>. Singapore: ICLR.","short":"D. Yao, D. Rancati, R. Cadei, M. Fumero, F. Locatello, in:, 13th International Conference on Learning Representations, ICLR, 2025."},"file":[{"file_name":"4356_Unifying_Causal_Represent (1).pdf","content_type":"application/pdf","file_id":"21048","relation":"main_file","file_size":877014,"date_updated":"2026-01-27T12:43:25Z","access_level":"open_access","date_created":"2026-01-27T12:43:25Z","checksum":"c4b5a4a644228c6d1b0283e1368bce9e","creator":"flocatel","success":1}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2025","publication_status":"published","date_updated":"2026-02-09T05:52:14Z","file_date_updated":"2026-01-27T12:43:25Z","author":[{"first_name":"Dingling","last_name":"Yao","full_name":"Yao, Dingling","id":"d3e02e50-48a8-11ee-8f62-c108061797fa"},{"id":"feb58f2e-72ef-11ef-b75a-8f0894539cd0","full_name":"Rancati, Dario","last_name":"Rancati","first_name":"Dario"},{"last_name":"Cadei","first_name":"Riccardo","id":"0fa8b76f-72f0-11ef-b75a-a5da96e5ad6b","full_name":"Cadei, Riccardo"},{"first_name":"Marco","last_name":"Fumero","full_name":"Fumero, Marco","id":"1c1593eb-393f-11ef-bb8e-ab4f1e979650"},{"orcid":"0000-0002-4850-0683","full_name":"Locatello, Francesco","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","first_name":"Francesco","last_name":"Locatello"}],"external_id":{"arxiv":["2409.02772"]},"abstract":[{"text":"Causal representation learning aims at recovering latent causal variables from high-dimensional observations to solve causal downstream tasks, such as predicting the effect of new interventions or more robust classification. A plethora of methods have been developed, each tackling carefully crafted problem settings that lead to different types of identifiability. The folklore is that these different settings are important, as they are often linked to different rungs of Pearl's causal hierarchy, although not all neatly fit. Our main contribution is to show that many existing causal representation learning approaches methodologically align the representation to known data symmetries. Identification of the variables is guided by equivalence classes across different \"data pockets\" that are not necessarily causal. This result suggests important implications, allowing us to unify many existing approaches in a single method that can mix and match different assumptions, including non-causal ones, based on the invariances relevant to our application. It also significantly benefits applicability, which we demonstrate by improving treatment effect estimation on real-world high-dimensional ecological data. Overall, this paper clarifies the role of causality assumptions in the discovery of causal variables and shifts the focus to preserving data symmetries.","lang":"eng"}],"department":[{"_id":"FrLo"}],"_id":"19010","oa_version":"Published Version","oa":1},{"ddc":["530"],"corr_author":"1","publication_identifier":{"eissn":["1745-2481"],"issn":["1745-2473"]},"scopus_import":"1","OA_type":"hybrid","title":"Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer","acknowledgement":"J.V., D.W. and M.W. acknowledge support from the project Jülich UNified Infrastructure for Quantum computing (JUNIQ) that has received funding from the German Federal Ministry of Education and Research (BMBF) and the Ministry of Culture and Science of the State of North Rhine-Westphalia. A.R. acknowledges support from the project HPCQS (101018180) of the European High-Performance Computing Joint Undertaking (EuroHPC JU). J.-Y.D., A.H. and Z.P. acknowledge support from the Leverhulme Trust Research Leadership Award RL-2019-015 and EPSRC grant nos. EP/R513258/1 and EP/W026848/1. J.-Y.D. acknowledges support from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no.101034413. This research was supported in part by grant no. NSF PHY-2309135 to the Kavli Institute for Theoretical Physics (KITP). Computational portions of this research work were carried out on ARC3 and ARC4, part of the high-performance computing facilities at the University of Leeds. G.H. acknowledges financial support from ARIS, P1-0040 Nonequilibrium Quantum System Dynamics. We gratefully acknowledge the Jülich Supercomputing Centre (https://www.fz-juelich.de/en/ias/jsc) for funding this project by providing computing time on the D-Wave Advantage System JUPSI through JUNIQ. We acknowledge helpful theoretical discussions with G. Lagnese and the quantum-simulation-related discussions with D-Wave’s experimental team, particularly A. MacDonald, G. Poulin-Lamarre, A. Daian and A. Berkley. We also thank V. Goliber and A. Mason for patiently organizing and mediating the corresponding meetings that enabled the discussions with D-Wave’s team. J.V., A.R., D.W., F.J., M.W. and K.M. gratefully acknowledge the Gauss Centre for Supercomputing e.V. (www.gauss-centre.eu) for funding this project by providing computing time on the GCS Supercomputer JUWELS at Jülich Supercomputing Centre (JSC).","day":"01","type":"journal_article","has_accepted_license":"1","status":"public","doi":"10.1038/s41567-024-02765-w","date_created":"2025-02-06T10:07:13Z","arxiv":1,"date_published":"2025-03-01T00:00:00Z","citation":{"ama":"Vodeb J, Desaules J-YM, Hallam A, et al. Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. <i>Nature Physics</i>. 2025;21:386-392. doi:<a href=\"https://doi.org/10.1038/s41567-024-02765-w\">10.1038/s41567-024-02765-w</a>","chicago":"Vodeb, Jaka, Jean-Yves Marc Desaules, Andrew Hallam, Andrea Rava, Gregor Humar, Dennis Willsch, Fengping Jin, Madita Willsch, Kristel Michielsen, and Zlatko Papić. “Stirring the False Vacuum via Interacting Quantized Bubbles on a 5,564-Qubit Quantum Annealer.” <i>Nature Physics</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41567-024-02765-w\">https://doi.org/10.1038/s41567-024-02765-w</a>.","ieee":"J. Vodeb <i>et al.</i>, “Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer,” <i>Nature Physics</i>, vol. 21. Springer Nature, pp. 386–392, 2025.","mla":"Vodeb, Jaka, et al. “Stirring the False Vacuum via Interacting Quantized Bubbles on a 5,564-Qubit Quantum Annealer.” <i>Nature Physics</i>, vol. 21, Springer Nature, 2025, pp. 386–92, doi:<a href=\"https://doi.org/10.1038/s41567-024-02765-w\">10.1038/s41567-024-02765-w</a>.","ista":"Vodeb J, Desaules J-YM, Hallam A, Rava A, Humar G, Willsch D, Jin F, Willsch M, Michielsen K, Papić Z. 2025. Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. Nature Physics. 21, 386–392.","apa":"Vodeb, J., Desaules, J.-Y. M., Hallam, A., Rava, A., Humar, G., Willsch, D., … Papić, Z. (2025). Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-024-02765-w\">https://doi.org/10.1038/s41567-024-02765-w</a>","short":"J. Vodeb, J.-Y.M. Desaules, A. Hallam, A. Rava, G. Humar, D. Willsch, F. Jin, M. Willsch, K. Michielsen, Z. Papić, Nature Physics 21 (2025) 386–392."},"intvolume":"        21","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"language":[{"iso":"eng"}],"publisher":"Springer Nature","OA_place":"publisher","pmid":1,"month":"03","publication":"Nature Physics","article_processing_charge":"Yes (via OA deal)","quality_controlled":"1","file_date_updated":"2025-08-05T11:56:53Z","date_updated":"2025-09-30T10:29:15Z","year":"2025","volume":21,"publication_status":"published","file":[{"creator":"dernst","success":1,"date_created":"2025-08-05T11:56:53Z","checksum":"b005ccf7448fee29c187cbc9b1944893","access_level":"open_access","date_updated":"2025-08-05T11:56:53Z","file_size":2252107,"file_id":"20127","content_type":"application/pdf","relation":"main_file","file_name":"2025_NaturePhysics_Vodeb.pdf"}],"related_material":{"link":[{"url":"https://ista.ac.at/en/news/dancing-bubbles-model-a-cosmic-disaster/","description":"News on ISTA Website","relation":"press_release"}]},"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","page":"386-392","article_type":"original","oa":1,"_id":"19012","ec_funded":1,"project":[{"name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020"}],"oa_version":"Published Version","PlanS_conform":"1","department":[{"_id":"MaSe"}],"author":[{"full_name":"Vodeb, Jaka","first_name":"Jaka","last_name":"Vodeb"},{"id":"6c292945-a610-11ed-9eec-c3be1ad62a80","orcid":"0000-0002-3749-6375","full_name":"Desaules, Jean-Yves Marc","last_name":"Desaules","first_name":"Jean-Yves Marc"},{"first_name":"Andrew","last_name":"Hallam","full_name":"Hallam, Andrew"},{"last_name":"Rava","first_name":"Andrea","full_name":"Rava, Andrea"},{"full_name":"Humar, Gregor","first_name":"Gregor","last_name":"Humar"},{"full_name":"Willsch, Dennis","first_name":"Dennis","last_name":"Willsch"},{"full_name":"Jin, Fengping","last_name":"Jin","first_name":"Fengping"},{"full_name":"Willsch, Madita","first_name":"Madita","last_name":"Willsch"},{"first_name":"Kristel","last_name":"Michielsen","full_name":"Michielsen, Kristel"},{"first_name":"Zlatko","last_name":"Papić","full_name":"Papić, Zlatko"}],"external_id":{"pmid":["40093970"],"isi":["001412684400001"],"arxiv":["2406.14718"]},"abstract":[{"lang":"eng","text":"False vacuum decay—the transition from a metastable quantum state to a true vacuum state—plays an important role in quantum field theory and non-equilibrium phenomena such as phase transitions and dynamical metastability. The non-perturbative nature of false vacuum decay and the limited experimental access to this process make it challenging to study, leaving several open questions regarding how true vacuum bubbles form, move and interact. Here we observe quantized bubble formation in real time, a key feature of false vacuum decay dynamics, using a quantum annealer with 5,564 superconducting flux qubits. We develop an effective model that captures both initial bubble creation and subsequent interactions, and remains accurate under dissipation. The annealer reveals coherent scaling laws in the driven many-body dynamics for more than 1,000 intrinsic qubit time units. This work provides a method for investigating false vacuum dynamics of large quantum systems in quantum annealers."}]},{"intvolume":"        59","citation":{"ama":"Parrella F, Brizzolara S, Holzner M, Mitrano DM. Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. <i>Environmental Science and Technology</i>. 2025;59(4):2257-2265. doi:<a href=\"https://doi.org/10.1021/acs.est.4c10551\">10.1021/acs.est.4c10551</a>","ieee":"F. Parrella, S. Brizzolara, M. Holzner, and D. M. Mitrano, “Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates,” <i>Environmental Science and Technology</i>, vol. 59, no. 4. American Chemical Society, pp. 2257–2265, 2025.","chicago":"Parrella, Francesco, Stefano Brizzolara, Markus Holzner, and Denise M. Mitrano. “Microplastics Settling in Turbid Water: Impacts of Sediments-Induced Flow Patterns on Particle Deposition Rates.” <i>Environmental Science and Technology</i>. American Chemical Society, 2025. <a href=\"https://doi.org/10.1021/acs.est.4c10551\">https://doi.org/10.1021/acs.est.4c10551</a>.","mla":"Parrella, Francesco, et al. “Microplastics Settling in Turbid Water: Impacts of Sediments-Induced Flow Patterns on Particle Deposition Rates.” <i>Environmental Science and Technology</i>, vol. 59, no. 4, American Chemical Society, 2025, pp. 2257–65, doi:<a href=\"https://doi.org/10.1021/acs.est.4c10551\">10.1021/acs.est.4c10551</a>.","ista":"Parrella F, Brizzolara S, Holzner M, Mitrano DM. 2025. Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. Environmental Science and Technology. 59(4), 2257–2265.","apa":"Parrella, F., Brizzolara, S., Holzner, M., &#38; Mitrano, D. M. (2025). Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. <i>Environmental Science and Technology</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.est.4c10551\">https://doi.org/10.1021/acs.est.4c10551</a>","short":"F. Parrella, S. Brizzolara, M. Holzner, D.M. Mitrano, Environmental Science and Technology 59 (2025) 2257–2265."},"date_published":"2025-01-27T00:00:00Z","publication":"Environmental Science and Technology","quality_controlled":"1","article_processing_charge":"No","publisher":"American Chemical Society","language":[{"iso":"eng"}],"pmid":1,"month":"01","title":"Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates","issue":"4","OA_type":"closed access","scopus_import":"1","publication_identifier":{"eissn":["1520-5851"],"issn":["0013-936X"]},"status":"public","date_created":"2025-02-09T23:01:50Z","doi":"10.1021/acs.est.4c10551","acknowledgement":"F.P. and D.M.M. were funded through the Swiss National Science Foundation (grant number PCEFP2_186856).","day":"27","type":"journal_article","_id":"19015","oa_version":"None","page":"2257-2265","article_type":"original","external_id":{"isi":["001406914100001"],"pmid":["39868426"]},"author":[{"last_name":"Parrella","first_name":"Francesco","full_name":"Parrella, Francesco"},{"id":"4bbe33b8-c59a-11ee-a1af-fa33d1ac42c4","full_name":"Brizzolara, Stefano","last_name":"Brizzolara","first_name":"Stefano"},{"full_name":"Holzner, Markus","first_name":"Markus","last_name":"Holzner"},{"first_name":"Denise M.","last_name":"Mitrano","full_name":"Mitrano, Denise M."}],"abstract":[{"lang":"eng","text":"When microplastics (MPs) enter water bodies, they undergo various transport processes, including sedimentation, which can be influenced by factors such as particle size, density, and interactions with other particles. Surface waters contain suspended natural particles (e.g., clay and silt), which may impact MP settling rates. Here, we investigated how the presence of suspended sediments (SS) influenced the deposition patterns and rates of MPs in turbid waters. We systematically analyzed the settling velocities of particles, including different MP sizes and SS concentrations, in a plexiglass column with a camera array. For each experimental variant, we collected data on thousands of individual MPs, strengthening the statistical analysis of the particles’ velocities. Simultaneous measurements of the SS flow and MPs trajectories revealed that the SS induced complex flow patterns, with MPs spending more time in downwelling flow regions, thereby accelerating MPs sedimentation. This effect was more pronounced when SS were aggregated. Additionally, we found that smaller MP fragments were more affected by the fluctuations than spheres or larger fragments. Collectively, our results provide valuable data for future MP fate models and help to understand the sedimentation processes of MPs in natural waters, which is crucial for assessing their environmental transport and impact."}],"department":[{"_id":"BjHo"}],"date_updated":"2025-09-30T10:27:26Z","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2025","volume":59,"publication_status":"published"},{"date_created":"2025-02-10T08:39:46Z","doi":"10.4153/s0008414x25000021","arxiv":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.4153/s0008414x25000021"}],"has_accepted_license":"1","status":"public","day":"06","type":"journal_article","OA_type":"hybrid","title":"On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7","ddc":["500"],"publication_identifier":{"eissn":["1496-4279"],"issn":["0008-414X"]},"scopus_import":"1","article_processing_charge":"No","quality_controlled":"1","publication":"Canadian Journal of Mathematics","month":"01","language":[{"iso":"eng"}],"OA_place":"publisher","publisher":"Cambridge University Press","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_published":"2025-01-06T00:00:00Z","citation":{"mla":"Glock, Stefan, et al. “On the (k + 2, k)-Problem of Brown, Erdős, and Sós for k = 5,6,7.” <i>Canadian Journal of Mathematics</i>, Cambridge University Press, 2025, pp. 1–43, doi:<a href=\"https://doi.org/10.4153/s0008414x25000021\">10.4153/s0008414x25000021</a>.","ieee":"S. Glock, J. Kim, L. Lichev, O. Pikhurko, and S. Sun, “On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7,” <i>Canadian Journal of Mathematics</i>. Cambridge University Press, pp. 1–43, 2025.","chicago":"Glock, Stefan, Jaehoon Kim, Lyuben Lichev, Oleg Pikhurko, and Shumin Sun. “On the (k + 2, k)-Problem of Brown, Erdős, and Sós for k = 5,6,7.” <i>Canadian Journal of Mathematics</i>. Cambridge University Press, 2025. <a href=\"https://doi.org/10.4153/s0008414x25000021\">https://doi.org/10.4153/s0008414x25000021</a>.","ama":"Glock S, Kim J, Lichev L, Pikhurko O, Sun S. On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. <i>Canadian Journal of Mathematics</i>. 2025:1-43. doi:<a href=\"https://doi.org/10.4153/s0008414x25000021\">10.4153/s0008414x25000021</a>","short":"S. Glock, J. Kim, L. Lichev, O. Pikhurko, S. Sun, Canadian Journal of Mathematics (2025) 1–43.","ista":"Glock S, Kim J, Lichev L, Pikhurko O, Sun S. 2025. On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. Canadian Journal of Mathematics., 1–43.","apa":"Glock, S., Kim, J., Lichev, L., Pikhurko, O., &#38; Sun, S. (2025). On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. <i>Canadian Journal of Mathematics</i>. Cambridge University Press. <a href=\"https://doi.org/10.4153/s0008414x25000021\">https://doi.org/10.4153/s0008414x25000021</a>"},"isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication_status":"epub_ahead","year":"2025","date_updated":"2025-09-30T10:28:07Z","abstract":[{"text":"Let f(r)(n;s,k) denote the maximum number of edges in an n-vertex r-uniform hypergraph containing no subgraph with k edges and at most s vertices. Brown, Erdős and Sós [New directions in the theory of graphs (Proc. Third Ann Arbor Conf., Univ. Michigan 1971), pp. 53--63, Academic Press 1973] conjectured that the limit limn→∞n−2f(3)(n;k+2,k) exists for all k. The value of the limit was previously determined for k=2 in the original paper of Brown, Erdős and Sós, for k=3 by Glock [Bull. Lond. Math. Soc. 51 (2019) 230--236] and for k=4 by Glock, Joos, Kim, Kühn, Lichev and Pikhurko [arXiv:2209.14177, accepted by Proc. Amer. Math. Soc.] while Delcourt and Postle [arXiv:2210.01105, accepted by Proc. Amer. Math. Soc.] proved the conjecture (without determining the limiting value).\r\nIn this paper, we determine the value of the limit in the Brown-Erdős-Sós Problem for k∈{5,6,7}. More generally, we obtain the value of limn→∞n−2f(r)(n;rk−2k+2,k) for all r≥3 and k∈{5,6,7}. In addition, by combining these new values with recent results of Bennett, Cushman and Dudek [arXiv:2309.00182] we obtain new asymptotic values for several generalised Ramsey numbers.","lang":"eng"}],"author":[{"full_name":"Glock, Stefan","last_name":"Glock","first_name":"Stefan"},{"full_name":"Kim, Jaehoon","first_name":"Jaehoon","last_name":"Kim"},{"first_name":"Lyuben","last_name":"Lichev","full_name":"Lichev, Lyuben","id":"9aa8388e-d003-11ee-8458-c4c1d7447977"},{"full_name":"Pikhurko, Oleg","last_name":"Pikhurko","first_name":"Oleg"},{"full_name":"Sun, Shumin","first_name":"Shumin","last_name":"Sun"}],"external_id":{"arxiv":["2403.04474"],"isi":["001416788600001"]},"department":[{"_id":"MaKw"}],"oa_version":"Published Version","_id":"19017","oa":1,"page":"1-43","article_type":"original"}]