[{"status":"public","acknowledgement":"The authors would like to acknowledge the Super Resolution Light Microcopy and Nanoscopy (SLN) Facility of ICFO for their support with imaging experiments, Johann Osmond (Nanofabrication laboratory, ICFO) for the design and production of molds for generating confinement coverslip, Merche Rivas for cell culture of immune cells and further support from the CRG Core Facilities for Genomics and Advanced Light Microscopy. We would like to thank Michael Sixt for discussions on this work and the Quidant, Ruprecht, and Wieser lab members for critical reading of the manuscript. This research was supported by the Scientific Service Units (SSU) of IST-Austria through resources provided by the Nanofabrication Facility (NFF). C.A. acknowledges the funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no 847517 and V.V. from the ICFOstepstone – PhD Programme funded by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no 665884. S.W. acknowledges support through the Spanish Ministry of Economy and Competitiveness via MINECO’s Plan Nacional (BFU2017-86296-P). V.R. acknowledges funding from the European Union’s HORIZON-EIC-2021-PATHFINDEROPEN program under grant agreement no. 101046620 and European Union's Horizon Europe program under the grant agreement no. 101072123. E.K. acknowledges funding by a fellowship of the Ministry of Innovation, Science and Research of North-Rhine-Westphalia (AZ: 421-8.03.03.02-137069) and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy – EXC 2151 – 390873048 and by the TRA Life and Health (University of Bonn) as part of the Excellence Strategy of the federal and state governments.","author":[{"first_name":"Iván","last_name":"Company-Garrido","full_name":"Company-Garrido, Iván"},{"first_name":"Alberto","full_name":"Zurita Carpio, Alberto","last_name":"Zurita Carpio"},{"first_name":"Mariona","last_name":"Colomer-Rosell","full_name":"Colomer-Rosell, Mariona"},{"first_name":"Bernard","last_name":"Ciraulo","full_name":"Ciraulo, Bernard"},{"first_name":"Ronja","full_name":"Molkenbur, Ronja","last_name":"Molkenbur"},{"last_name":"Lanzerstorfer","full_name":"Lanzerstorfer, Peter","first_name":"Peter"},{"last_name":"Pezzano","full_name":"Pezzano, Fabio","first_name":"Fabio"},{"full_name":"Agazzi, Costanza","last_name":"Agazzi","first_name":"Costanza"},{"first_name":"Robert","last_name":"Hauschild","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","full_name":"Hauschild, Robert","orcid":"0000-0001-9843-3522"},{"first_name":"Saumey","last_name":"Jain","full_name":"Jain, Saumey"},{"first_name":"Jeroen M.","last_name":"Jacques","full_name":"Jacques, Jeroen M."},{"first_name":"Valeria","last_name":"Venturini","full_name":"Venturini, Valeria"},{"first_name":"Christian","full_name":"Knapp, Christian","last_name":"Knapp"},{"first_name":"Yufei","full_name":"Xie, Yufei","last_name":"Xie"},{"first_name":"Jack","last_name":"Merrin","id":"4515C308-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5145-4609","full_name":"Merrin, Jack"},{"full_name":"Weghuber, Julian","last_name":"Weghuber","first_name":"Julian"},{"first_name":"Marcel","full_name":"Schaaf, Marcel","last_name":"Schaaf"},{"full_name":"Quidant, Romain","last_name":"Quidant","first_name":"Romain"},{"full_name":"Kiermaier, Eva","orcid":"0000-0001-6165-5738","id":"3EB04B78-F248-11E8-B48F-1D18A9856A87","last_name":"Kiermaier","first_name":"Eva"},{"full_name":"Ortega Arroyo, Jaime","last_name":"Ortega Arroyo","first_name":"Jaime"},{"first_name":"Verena","last_name":"Ruprecht","id":"4D71A03A-F248-11E8-B48F-1D18A9856A87","full_name":"Ruprecht, Verena","orcid":"0000-0003-4088-8633"},{"orcid":"0000-0002-2670-2217","full_name":"Wieser, Stefan","id":"355AA5A0-F248-11E8-B48F-1D18A9856A87","last_name":"Wieser","first_name":"Stefan"}],"external_id":{"pmid":["41192429"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-11-04T00:00:00Z","publication":"Developmental Cell","language":[{"iso":"eng"}],"year":"2025","day":"04","scopus_import":"1","citation":{"mla":"Company-Garrido, Iván, et al. “Myosin II Regulates Cellular Thermo-Adaptability and the Efficiency of Immune Responses.” <i>Developmental Cell</i>, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.devcel.2025.10.006\">10.1016/j.devcel.2025.10.006</a>.","apa":"Company-Garrido, I., Zurita Carpio, A., Colomer-Rosell, M., Ciraulo, B., Molkenbur, R., Lanzerstorfer, P., … Wieser, S. (2025). Myosin II regulates cellular thermo-adaptability and the efficiency of immune responses. <i>Developmental Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2025.10.006\">https://doi.org/10.1016/j.devcel.2025.10.006</a>","chicago":"Company-Garrido, Iván, Alberto Zurita Carpio, Mariona Colomer-Rosell, Bernard Ciraulo, Ronja Molkenbur, Peter Lanzerstorfer, Fabio Pezzano, et al. “Myosin II Regulates Cellular Thermo-Adaptability and the Efficiency of Immune Responses.” <i>Developmental Cell</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.devcel.2025.10.006\">https://doi.org/10.1016/j.devcel.2025.10.006</a>.","ista":"Company-Garrido I, Zurita Carpio A, Colomer-Rosell M, Ciraulo B, Molkenbur R, Lanzerstorfer P, Pezzano F, Agazzi C, Hauschild R, Jain S, Jacques JM, Venturini V, Knapp C, Xie Y, Merrin J, Weghuber J, Schaaf M, Quidant R, Kiermaier E, Ortega Arroyo J, Ruprecht V, Wieser S. 2025. Myosin II regulates cellular thermo-adaptability and the efficiency of immune responses. Developmental Cell.","ama":"Company-Garrido I, Zurita Carpio A, Colomer-Rosell M, et al. Myosin II regulates cellular thermo-adaptability and the efficiency of immune responses. <i>Developmental Cell</i>. 2025. doi:<a href=\"https://doi.org/10.1016/j.devcel.2025.10.006\">10.1016/j.devcel.2025.10.006</a>","short":"I. Company-Garrido, A. Zurita Carpio, M. Colomer-Rosell, B. Ciraulo, R. Molkenbur, P. Lanzerstorfer, F. Pezzano, C. Agazzi, R. Hauschild, S. Jain, J.M. Jacques, V. Venturini, C. Knapp, Y. Xie, J. Merrin, J. Weghuber, M. Schaaf, R. Quidant, E. Kiermaier, J. Ortega Arroyo, V. Ruprecht, S. Wieser, Developmental Cell (2025).","ieee":"I. Company-Garrido <i>et al.</i>, “Myosin II regulates cellular thermo-adaptability and the efficiency of immune responses,” <i>Developmental Cell</i>. Elsevier, 2025."},"date_created":"2025-12-28T23:01:27Z","quality_controlled":"1","doi":"10.1016/j.devcel.2025.10.006","oa":1,"ddc":["570"],"abstract":[{"text":"Effective immune responses rely on the efficient migration of leukocytes. Yet, how temperature regulates migration dynamics at the single-cell level has remained poorly understood. Using zebrafish embryos and mouse tissue explants, we found that temperature positively regulates leukocyte migration speed, exploration, and arrival frequencies to wounds and lymph vessels. Complementary 2D and 3D cultures revealed that this thermokinetic control of cell migration is conserved across immune cell types, independently of the 3D tissue environment. By applying precise (sub-)cellular temperature modulation, we identified a rapid and reversible thermo-response that depends on myosin II activity. Small physiological increases in temperature (1°C –2°C), as present during fever-like conditions, profoundly increased immune responses by accelerating arrival times at lymphatic vessels and tissue wounds. These findings identify myosin-II-dependent actomyosin contractility as a critical mechanical structure regulating single-cell thermo-adaptability, with physiological implications for tuning the speed of immune responses in vivo.","lang":"eng"}],"has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","PlanS_conform":"1","OA_type":"hybrid","main_file_link":[{"url":"https://doi.org/10.1016/j.devcel.2025.10.006","open_access":"1"}],"article_type":"original","month":"11","oa_version":"Published Version","publisher":"Elsevier","type":"journal_article","publication_status":"epub_ahead","publication_identifier":{"issn":["1534-5807"],"eissn":["1878-1551"]},"acknowledged_ssus":[{"_id":"NanoFab"}],"OA_place":"publisher","pmid":1,"_id":"20859","department":[{"_id":"Bio"},{"_id":"NanoFab"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Myosin II regulates cellular thermo-adaptability and the efficiency of immune responses","date_updated":"2025-12-29T09:23:58Z"},{"department":[{"_id":"ToHe"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Hypernode automata","date_updated":"2026-01-05T12:27:41Z","publication_identifier":{"issn":["0001-5903"],"eissn":["1432-0525"]},"OA_place":"publisher","ec_funded":1,"_id":"20866","arxiv":1,"oa_version":"Published Version","type":"journal_article","publisher":"Springer Nature","publication_status":"published","OA_type":"hybrid","article_type":"original","month":"12","project":[{"_id":"62781420-2b32-11ec-9570-8d9b63373d4d","name":"Vigilant Algorithmic Monitoring of Software","call_identifier":"H2020","grant_number":"101020093"},{"name":"Interface Theory for Security and Privacy","grant_number":"F8502","_id":"34a1b658-11ca-11ed-8bc3-c75229f0241e"}],"file_date_updated":"2026-01-05T12:26:43Z","oa":1,"ddc":["000"],"abstract":[{"lang":"eng","text":"In this work, we present hypernode automata as a specification formalism for hyperproperties of systems whose executions may be misaligned among themselves, such as concurrent systems. These automata consist of nodes labeled with hypernode logic formulas and transitions marked with synchronizing actions. Hypernode logic formulas establish relations between sequences of variable values among different system executions. This logic enables both synchronous and asynchronous analysis of traces. In its asynchronous view on execution traces, hypernode formulas establish relations on the order of value changes for each variable without correlating their timing. In both views, the analysis of different execution traces is synchronized through the transitions of hypernode automata. By combining logic’s declarative nature with automata’s procedural power, hypernode automata seamlessly integrate asynchronicity requirements at the node level with synchronicity between node transitions. We show that the model-checking problem for hypernode automata is decidable for specifications where each node specifies either a synchronous or an asynchronous requirement for the system’s executions, but not both."}],"has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","article_number":"43","corr_author":"1","day":"09","scopus_import":"1","date_created":"2025-12-29T12:07:12Z","citation":{"chicago":"Bartocci, Ezio, Marek Chalupa, Thomas A Henzinger, Dejan Nickovic, and Ana Oliveira da Costa. “Hypernode Automata.” <i>Acta Informatica</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s00236-025-00509-8\">https://doi.org/10.1007/s00236-025-00509-8</a>.","apa":"Bartocci, E., Chalupa, M., Henzinger, T. A., Nickovic, D., &#38; Oliveira da Costa, A. (2025). Hypernode automata. <i>Acta Informatica</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00236-025-00509-8\">https://doi.org/10.1007/s00236-025-00509-8</a>","mla":"Bartocci, Ezio, et al. “Hypernode Automata.” <i>Acta Informatica</i>, vol. 62, no. 4, 43, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1007/s00236-025-00509-8\">10.1007/s00236-025-00509-8</a>.","ista":"Bartocci E, Chalupa M, Henzinger TA, Nickovic D, Oliveira da Costa A. 2025. Hypernode automata. Acta Informatica. 62(4), 43.","ieee":"E. Bartocci, M. Chalupa, T. A. Henzinger, D. Nickovic, and A. Oliveira da Costa, “Hypernode automata,” <i>Acta Informatica</i>, vol. 62, no. 4. Springer Nature, 2025.","short":"E. Bartocci, M. Chalupa, T.A. Henzinger, D. Nickovic, A. Oliveira da Costa, Acta Informatica 62 (2025).","ama":"Bartocci E, Chalupa M, Henzinger TA, Nickovic D, Oliveira da Costa A. Hypernode automata. <i>Acta Informatica</i>. 2025;62(4). doi:<a href=\"https://doi.org/10.1007/s00236-025-00509-8\">10.1007/s00236-025-00509-8</a>"},"quality_controlled":"1","doi":"10.1007/s00236-025-00509-8","intvolume":"        62","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"14405"}]},"issue":"4","language":[{"iso":"eng"}],"publication":"Acta Informatica","year":"2025","status":"public","acknowledgement":"This work was supported in part by the Austrian Science Fund (FWF) SFB project SpyCoDe 10.55776/F85, by the FWF projects ZK-35 and W1255-N23, and by the ERC Advanced Grant VAMOS 101020093. Open access funding provided by Institute of Science and Technology (IST Austria).","author":[{"first_name":"Ezio","last_name":"Bartocci","full_name":"Bartocci, Ezio"},{"first_name":"Marek","id":"87e34708-d6c6-11ec-9f5b-9391e7be2463","last_name":"Chalupa","full_name":"Chalupa, Marek"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger","full_name":"Henzinger, Thomas A","orcid":"0000-0002-2985-7724","first_name":"Thomas A"},{"last_name":"Nickovic","id":"41BCEE5C-F248-11E8-B48F-1D18A9856A87","full_name":"Nickovic, Dejan","first_name":"Dejan"},{"first_name":"Ana","full_name":"Oliveira da Costa, Ana","orcid":"0000-0002-8741-5799","last_name":"Oliveira da Costa","id":"f347ec37-6676-11ee-b395-a888cb7b4fb4"}],"external_id":{"arxiv":["2305.02836"]},"volume":62,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-12-09T00:00:00Z","file":[{"date_updated":"2026-01-05T12:26:43Z","relation":"main_file","creator":"dernst","file_id":"20944","file_size":7117003,"file_name":"2025_ActaInformatica_Bartocci.pdf","success":1,"access_level":"open_access","content_type":"application/pdf","date_created":"2026-01-05T12:26:43Z","checksum":"06ed45a1218ad8464818803ae2968aaf"}]},{"PlanS_conform":"1","OA_type":"diamond","article_type":"original","project":[{"name":"Algebraic Footprints of Geometric Features in Homology","call_identifier":"FWF","grant_number":"I04245","_id":"26AD5D90-B435-11E9-9278-68D0E5697425"}],"month":"11","arxiv":1,"oa_version":"Published Version","type":"journal_article","publisher":"Mathematical Sciences Publishers","publication_status":"published","publication_identifier":{"issn":["1472-2747"],"eissn":["1472-2739"]},"OA_place":"publisher","_id":"20867","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff space into Hilbert spaces","department":[{"_id":"HeEd"}],"date_updated":"2026-01-05T12:19:09Z","acknowledgement":"The author was supported by the FWF Grant, Project number I4245-N35. The author would like to thank Thomas Weighill for the helpful discussions around Theorem 3.10, and Takamitsu Yamauchi for bringing to my attention the fundamental reference [35]. Furthermore, the author\r\nis thankful for the detailed and helpful comments of the reviewer of this manuscript.","status":"public","author":[{"orcid":"0000-0001-8686-1888","full_name":"Zava, Nicolò","last_name":"Zava","id":"c8b3499c-7a77-11eb-b046-aa368cbbf2ad","first_name":"Nicolò"}],"external_id":{"arxiv":["2303.04730"]},"volume":25,"date_published":"2025-11-20T00:00:00Z","file":[{"date_updated":"2026-01-05T12:16:38Z","file_id":"20943","creator":"dernst","relation":"main_file","success":1,"file_name":"2025_AlgebraicGeomTopology_Zava.pdf","file_size":574389,"checksum":"1e05b4f17a44500ae1ae1e21bc636f6a","date_created":"2026-01-05T12:16:38Z","content_type":"application/pdf","access_level":"open_access"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"8","publication":"Algebraic & Geometric Topology","page":"5153-5174","language":[{"iso":"eng"}],"year":"2025","corr_author":"1","day":"20","scopus_import":"1","citation":{"ama":"Zava N. Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff space into Hilbert spaces. <i>Algebraic &#38; Geometric Topology</i>. 2025;25(8):5153-5174. doi:<a href=\"https://doi.org/10.2140/agt.2025.25.5153\">10.2140/agt.2025.25.5153</a>","short":"N. Zava, Algebraic &#38; Geometric Topology 25 (2025) 5153–5174.","ieee":"N. Zava, “Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff space into Hilbert spaces,” <i>Algebraic &#38; Geometric Topology</i>, vol. 25, no. 8. Mathematical Sciences Publishers, pp. 5153–5174, 2025.","ista":"Zava N. 2025. Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff space into Hilbert spaces. Algebraic &#38; Geometric Topology. 25(8), 5153–5174.","mla":"Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the Gromov–Hausdorff Space into Hilbert Spaces.” <i>Algebraic &#38; Geometric Topology</i>, vol. 25, no. 8, Mathematical Sciences Publishers, 2025, pp. 5153–74, doi:<a href=\"https://doi.org/10.2140/agt.2025.25.5153\">10.2140/agt.2025.25.5153</a>.","chicago":"Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the Gromov–Hausdorff Space into Hilbert Spaces.” <i>Algebraic &#38; Geometric Topology</i>. Mathematical Sciences Publishers, 2025. <a href=\"https://doi.org/10.2140/agt.2025.25.5153\">https://doi.org/10.2140/agt.2025.25.5153</a>.","apa":"Zava, N. (2025). Coarse and bi-Lipschitz embeddability of subspaces of the Gromov–Hausdorff space into Hilbert spaces. <i>Algebraic &#38; Geometric Topology</i>. Mathematical Sciences Publishers. <a href=\"https://doi.org/10.2140/agt.2025.25.5153\">https://doi.org/10.2140/agt.2025.25.5153</a>"},"date_created":"2025-12-29T12:09:09Z","quality_controlled":"1","doi":"10.2140/agt.2025.25.5153","intvolume":"        25","file_date_updated":"2026-01-05T12:16:38Z","oa":1,"abstract":[{"lang":"eng","text":"We discuss the embeddability of subspaces of the Gromov–Hausdorff space, which consists of isometry classes of compact metric spaces endowed with the Gromov–Hausdorff distance, into Hilbert spaces. These embeddings are particularly valuable for applications to topological data analysis. We prove that its subspace consisting of metric spaces with at most n points has asymptotic dimension n(n−1)∕2. Thus, there exists a coarse embedding of that space into a Hilbert space. On the contrary, if the number of points is not bounded, then the subspace cannot be coarsely embedded into any uniformly convex Banach space and so, in particular, into any Hilbert space. Furthermore, we prove that, even if we restrict to finite metric spaces whose diameter is bounded by some constant, the subspace still cannot be bi-Lipschitz embedded into any finite-dimensional Hilbert space. We obtain both nonembeddability results by finding obstructions to coarse and bi-Lipschitz embeddings in families of isometry classes of finite subsets of the real line endowed with the Euclidean–Hausdorff distance."}],"ddc":["500"],"has_accepted_license":"1","article_processing_charge":"No"},{"title":"Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai","department":[{"_id":"GaNo"}],"date_updated":"2026-01-05T12:02:29Z","publication_identifier":{"issn":["2731-6076"]},"_id":"20868","oa_version":"None","publication_status":"published","publisher":"Springer Nature","type":"journal_article","OA_type":"closed access","article_type":"original","project":[{"grant_number":"101057429","name":"Reducing the impact of major environmental challenges on mental health","_id":"349d1832-11ca-11ed-8bc3-d79b574010e0"}],"month":"12","abstract":[{"text":"Residents of low-latitude megacities face growing vulnerability to humid-heat stress under urbanization and global warming, yet limited research has assessed the morbidity burden of mental and behavioral disorders (MBDs) linked to humid-heat exposures in these cities. Here we quantify the hospital admissions of MBDs in Shanghai, a megacity of over 25 million inhabitants, attributable to humid heat, and project future burdens under various greenhouse gas (GHG)-emission and population scenarios. Humid heat drives a higher morbidity burden than high temperature alone, especially in humid-heat nights. Without population change, the humid-heat-related morbidity burden of MBDs would increase by 68.2% (95% empirical confidence interval 56.7%–81.6%) under the highest-GHG-emission scenario by the 2090s, while 8,465 (95% empirical confidence interval 6,928–10,053) cases would be avoided by reducing emissions to the lowest pathway. With projected population decline, the attributable hospital admissions will decrease toward century’s end. These findings highlight the benefit of GHG mitigation in reducing the growing MBD risks posed by extreme humid heat.","lang":"eng"}],"article_processing_charge":"No","day":"01","quality_controlled":"1","citation":{"chicago":"Liang, Chen, Jiacan Yuan, Renhe Zhang, Xu Tang, Gunter Schumann, Esther Hitchen, Elli Polemiti, et al. “Projecting the Morbidity Burden of Mental and Behavioral Disorders Associated with Increasing Humid Heat in Shanghai.” <i>Nature Mental Health</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s44220-025-00519-y\">https://doi.org/10.1038/s44220-025-00519-y</a>.","apa":"Liang, C., Yuan, J., Zhang, R., Tang, X., Schumann, G., Hitchen, E., … Brandlistuen, R. (2025). Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai. <i>Nature Mental Health</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s44220-025-00519-y\">https://doi.org/10.1038/s44220-025-00519-y</a>","mla":"Liang, Chen, et al. “Projecting the Morbidity Burden of Mental and Behavioral Disorders Associated with Increasing Humid Heat in Shanghai.” <i>Nature Mental Health</i>, vol. 3, no. 12, Springer Nature, 2025, pp. 1532–44, doi:<a href=\"https://doi.org/10.1038/s44220-025-00519-y\">10.1038/s44220-025-00519-y</a>.","ista":"Liang C, Yuan J, Zhang R, Tang X, Schumann G, Hitchen E, Polemiti E, Serin E, Kebir H, Lett TA, Vaidya N, Roy J-C, Walter H, Heinz A, Ralser M, Twardziok S, Eils R, Jentsch M, Taron U-H, Schütz T, Schepanski K, Banaschewski T, Neidhart M, Meyer-Lindenberg A, Tost H, Holz N, Schwarz E, Stringaris A, Christmann N, Janson K, Nees F, Neidhart M, Seefried B, Aden R, Andreassen OA, Westlye LT, van der Meer D, Fernández-Cabello S, Kjelkenes R, Ask H, Rapp M, Tschorn M, Böttger SJ, Marquand A, Bernas A, Novarino G, Slater M, Gallego J, Pastor Á, Feixas G, Eiroa-Orosa FJ, Nöthen MM, Forstner AJ, Claus I, Mathey C, Heilmann-Heimbach S, Hoffmann P, Miller A, Sommer P, Schmitt K, Wilbertz J, Patraskaki M, Jirsa V, Petkoski S, Athanasiadis A-P, Spanlang B, Pearmund C, Hese S, Renner P, Jia T, Chang X, Dai Y, Xia Y, Li Y, Zhang Y, Calhoun V, Thompson P, Clinton N, Desrivières S, Agunbiade K, Yu X, Zhang Z, Chen D, Young AH, Schwalber A, Köhler V, Stahl B, Ogoh G, Schikowski T, Brandlistuen R. 2025. Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai. Nature Mental Health. 3(12), 1532–1544.","short":"C. Liang, J. Yuan, R. Zhang, X. Tang, G. Schumann, E. Hitchen, E. Polemiti, E. Serin, H. Kebir, T.A. Lett, N. Vaidya, J.-C. Roy, H. Walter, A. Heinz, M. Ralser, S. Twardziok, R. Eils, M. Jentsch, U.-H. Taron, T. Schütz, K. Schepanski, T. Banaschewski, M. Neidhart, A. Meyer-Lindenberg, H. Tost, N. Holz, E. Schwarz, A. Stringaris, N. Christmann, K. Janson, F. Nees, M. Neidhart, B. Seefried, R. Aden, O.A. Andreassen, L.T. Westlye, D. van der Meer, S. Fernández-Cabello, R. Kjelkenes, H. Ask, M. Rapp, M. Tschorn, S.J. Böttger, A. Marquand, A. Bernas, G. Novarino, M. Slater, J. Gallego, Á. Pastor, G. Feixas, F.J. Eiroa-Orosa, M.M. Nöthen, A.J. Forstner, I. Claus, C. Mathey, S. Heilmann-Heimbach, P. Hoffmann, A. Miller, P. Sommer, K. Schmitt, J. Wilbertz, M. Patraskaki, V. Jirsa, S. Petkoski, A.-P. Athanasiadis, B. Spanlang, C. Pearmund, S. Hese, P. Renner, T. Jia, X. Chang, Y. Dai, Y. Xia, Y. Li, Y. Zhang, V. Calhoun, P. Thompson, N. Clinton, S. Desrivières, K. Agunbiade, X. Yu, Z. Zhang, D. Chen, A.H. Young, A. Schwalber, V. Köhler, B. Stahl, G. Ogoh, T. Schikowski, R. Brandlistuen, Nature Mental Health 3 (2025) 1532–1544.","ieee":"C. Liang <i>et al.</i>, “Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai,” <i>Nature Mental Health</i>, vol. 3, no. 12. Springer Nature, pp. 1532–1544, 2025.","ama":"Liang C, Yuan J, Zhang R, et al. Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai. <i>Nature Mental Health</i>. 2025;3(12):1532-1544. doi:<a href=\"https://doi.org/10.1038/s44220-025-00519-y\">10.1038/s44220-025-00519-y</a>"},"date_created":"2025-12-29T12:11:28Z","scopus_import":"1","doi":"10.1038/s44220-025-00519-y","intvolume":"         3","issue":"12","page":"1532-1544","language":[{"iso":"eng"}],"publication":"Nature Mental Health","year":"2025","status":"public","acknowledgement":"This research was supported by the National Natural Science Foundation of China (grants 42288101 and 42175066) and Shanghai International Science and Technology Partnership Project (grant 21230780200). G.S. is supported by the China Brain Project (grant 2025ZD0215100), the National Natural Science Foundation of China (grant 82150710554), the Chinese National Key Project (grant 2023YFE0199700), the National Natural Science Foundation of China (grant W2541022) and the EC Horizon Europe: environMENTAL project.","volume":3,"author":[{"first_name":"Chen","full_name":"Liang, Chen","last_name":"Liang"},{"first_name":"Jiacan","full_name":"Yuan, Jiacan","last_name":"Yuan"},{"first_name":"Renhe","last_name":"Zhang","full_name":"Zhang, Renhe"},{"full_name":"Tang, Xu","last_name":"Tang","first_name":"Xu"},{"full_name":"Schumann, Gunter","last_name":"Schumann","first_name":"Gunter"},{"full_name":"Hitchen, Esther","last_name":"Hitchen","first_name":"Esther"},{"first_name":"Elli","last_name":"Polemiti","full_name":"Polemiti, Elli"},{"first_name":"Emin","last_name":"Serin","full_name":"Serin, Emin"},{"last_name":"Kebir","full_name":"Kebir, Hedi","first_name":"Hedi"},{"last_name":"Lett","full_name":"Lett, Tristram A.","first_name":"Tristram A."},{"first_name":"Nilakshi","last_name":"Vaidya","full_name":"Vaidya, Nilakshi"},{"first_name":"Jean-Charles","full_name":"Roy, Jean-Charles","last_name":"Roy"},{"full_name":"Walter, Henrik","last_name":"Walter","first_name":"Henrik"},{"full_name":"Heinz, Andreas","last_name":"Heinz","first_name":"Andreas"},{"last_name":"Ralser","full_name":"Ralser, Markus","first_name":"Markus"},{"last_name":"Twardziok","full_name":"Twardziok, Sven","first_name":"Sven"},{"first_name":"Roland","last_name":"Eils","full_name":"Eils, Roland"},{"first_name":"Marcel","last_name":"Jentsch","full_name":"Jentsch, Marcel"},{"first_name":"Ulrike-Helene","full_name":"Taron, Ulrike-Helene","last_name":"Taron"},{"first_name":"Tatjana","last_name":"Schütz","full_name":"Schütz, Tatjana"},{"last_name":"Schepanski","full_name":"Schepanski, Kerstin","first_name":"Kerstin"},{"first_name":"Tobias","last_name":"Banaschewski","full_name":"Banaschewski, Tobias"},{"full_name":"Neidhart, Maja","last_name":"Neidhart","first_name":"Maja"},{"full_name":"Meyer-Lindenberg, Andreas","last_name":"Meyer-Lindenberg","first_name":"Andreas"},{"full_name":"Tost, Heike","last_name":"Tost","first_name":"Heike"},{"full_name":"Holz, Nathalie","last_name":"Holz","first_name":"Nathalie"},{"last_name":"Schwarz","full_name":"Schwarz, Emanuel","first_name":"Emanuel"},{"last_name":"Stringaris","full_name":"Stringaris, Argyris","first_name":"Argyris"},{"full_name":"Christmann, Nina","last_name":"Christmann","first_name":"Nina"},{"last_name":"Janson","full_name":"Janson, Karina","first_name":"Karina"},{"first_name":"Frauke","last_name":"Nees","full_name":"Nees, Frauke"},{"last_name":"Neidhart","full_name":"Neidhart, Maja","first_name":"Maja"},{"first_name":"Beke","last_name":"Seefried","full_name":"Seefried, Beke"},{"first_name":"Rieke","last_name":"Aden","full_name":"Aden, Rieke"},{"first_name":"Ole A.","full_name":"Andreassen, Ole A.","last_name":"Andreassen"},{"first_name":"Lars T.","full_name":"Westlye, Lars T.","last_name":"Westlye"},{"last_name":"van der Meer","full_name":"van der Meer, Dennis","first_name":"Dennis"},{"full_name":"Fernández-Cabello, Sara","last_name":"Fernández-Cabello","first_name":"Sara"},{"first_name":"Rikka","last_name":"Kjelkenes","full_name":"Kjelkenes, Rikka"},{"first_name":"Helga","full_name":"Ask, Helga","last_name":"Ask"},{"full_name":"Rapp, Michael","last_name":"Rapp","first_name":"Michael"},{"first_name":"Mira","last_name":"Tschorn","full_name":"Tschorn, Mira"},{"first_name":"Sarah Jane","full_name":"Böttger, Sarah Jane","last_name":"Böttger"},{"first_name":"Andre","last_name":"Marquand","full_name":"Marquand, Andre"},{"first_name":"Antoine","last_name":"Bernas","full_name":"Bernas, Antoine"},{"orcid":"0000-0002-7673-7178","full_name":"Novarino, Gaia","last_name":"Novarino","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","first_name":"Gaia"},{"last_name":"Slater","full_name":"Slater, Mel","first_name":"Mel"},{"first_name":"Jaime","full_name":"Gallego, Jaime","last_name":"Gallego"},{"full_name":"Pastor, Álvaro","last_name":"Pastor","first_name":"Álvaro"},{"last_name":"Feixas","full_name":"Feixas, Guillem","first_name":"Guillem"},{"first_name":"Francisco José","full_name":"Eiroa-Orosa, Francisco José","last_name":"Eiroa-Orosa"},{"first_name":"Markus M.","last_name":"Nöthen","full_name":"Nöthen, Markus M."},{"first_name":"Andreas J.","last_name":"Forstner","full_name":"Forstner, Andreas J."},{"first_name":"Isabelle","full_name":"Claus, Isabelle","last_name":"Claus"},{"last_name":"Mathey","full_name":"Mathey, Carina","first_name":"Carina"},{"full_name":"Heilmann-Heimbach, Stefanie","last_name":"Heilmann-Heimbach","first_name":"Stefanie"},{"first_name":"Per","last_name":"Hoffmann","full_name":"Hoffmann, Per"},{"first_name":"Abigail","last_name":"Miller","full_name":"Miller, Abigail"},{"first_name":"Peter","full_name":"Sommer, Peter","last_name":"Sommer"},{"first_name":"Karen","full_name":"Schmitt, Karen","last_name":"Schmitt"},{"full_name":"Wilbertz, Johannes","last_name":"Wilbertz","first_name":"Johannes"},{"first_name":"Myrto","full_name":"Patraskaki, Myrto","last_name":"Patraskaki"},{"first_name":"Viktor","full_name":"Jirsa, Viktor","last_name":"Jirsa"},{"last_name":"Petkoski","full_name":"Petkoski, Spase","first_name":"Spase"},{"last_name":"Athanasiadis","full_name":"Athanasiadis, Anastasios-Polykarpos","first_name":"Anastasios-Polykarpos"},{"first_name":"Bernhard","full_name":"Spanlang, Bernhard","last_name":"Spanlang"},{"first_name":"Charlie","last_name":"Pearmund","full_name":"Pearmund, Charlie"},{"full_name":"Hese, Sören","last_name":"Hese","first_name":"Sören"},{"full_name":"Renner, Paul","last_name":"Renner","first_name":"Paul"},{"full_name":"Jia, Tianye","last_name":"Jia","first_name":"Tianye"},{"full_name":"Chang, Xiao","last_name":"Chang","first_name":"Xiao"},{"full_name":"Dai, Yuxiang","last_name":"Dai","first_name":"Yuxiang"},{"first_name":"Yunman","full_name":"Xia, Yunman","last_name":"Xia"},{"first_name":"Yuzhu","last_name":"Li","full_name":"Li, Yuzhu"},{"full_name":"Zhang, Yanqing","last_name":"Zhang","first_name":"Yanqing"},{"first_name":"Vince","last_name":"Calhoun","full_name":"Calhoun, Vince"},{"first_name":"Paul","full_name":"Thompson, Paul","last_name":"Thompson"},{"first_name":"Nicholas","full_name":"Clinton, Nicholas","last_name":"Clinton"},{"full_name":"Desrivières, Sylvane","last_name":"Desrivières","first_name":"Sylvane"},{"last_name":"Agunbiade","full_name":"Agunbiade, Kofoworola","first_name":"Kofoworola"},{"last_name":"Yu","full_name":"Yu, Xinyang","first_name":"Xinyang"},{"full_name":"Zhang, Zuo","last_name":"Zhang","first_name":"Zuo"},{"last_name":"Chen","full_name":"Chen, Di","first_name":"Di"},{"first_name":"Allan H.","last_name":"Young","full_name":"Young, Allan H."},{"last_name":"Schwalber","full_name":"Schwalber, Ameli","first_name":"Ameli"},{"first_name":"Vanessa","full_name":"Köhler, Vanessa","last_name":"Köhler"},{"first_name":"Bernd","full_name":"Stahl, Bernd","last_name":"Stahl"},{"first_name":"George","full_name":"Ogoh, George","last_name":"Ogoh"},{"full_name":"Schikowski, Tamara","last_name":"Schikowski","first_name":"Tamara"},{"last_name":"Brandlistuen","full_name":"Brandlistuen, Ragnhild","first_name":"Ragnhild"}],"date_published":"2025-12-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"acknowledgement":"Thank you to Doug Schemske and Nick Barton forcritically reviewing the manuscript, Beatriz Pablo Car-mona for assisting with data collection, Melinda Pickupand Eva Cereghetti for seedlings, and Louise Arathoon,Ksenia Khudiakova, Georg Rieckh, Daria Shiplina, andAnja Westram for help with experimental maintenance.We sincerely thank the Associate Editor Brenda Grewelland two anonymous reviewers for their thoughtfulcomments and suggestions, which substantially improved the clarity and quality of our manuscript. C.B. receivedfunding from the European Union's Horizon 2020 researchand innovation programme under the Marie Skłodowska‐Curie Grant Agreement No. 754411","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-12-01T00:00:00Z","volume":112,"external_id":{"pmid":["41327576 "]},"author":[{"last_name":"Fuster‐Calvo","full_name":"Fuster‐Calvo, Alexandre","first_name":"Alexandre"},{"first_name":"Coline C.","full_name":"Jaworski, Coline C.","last_name":"Jaworski"},{"first_name":"Thomas","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","last_name":"Ellis","full_name":"Ellis, Thomas","orcid":"0000-0002-8511-0254"},{"first_name":"Carina","full_name":"Baskett, Carina","orcid":"0000-0002-7354-8574","id":"3B4A7CE2-F248-11E8-B48F-1D18A9856A87","last_name":"Baskett"}],"publication":"American Journal of Botany","language":[{"iso":"eng"}],"issue":"12","year":"2025","date_created":"2025-12-29T12:14:26Z","citation":{"chicago":"Fuster‐Calvo, Alexandre, Coline C. Jaworski, Thomas Ellis, and Carina Baskett. “Reduced Fitness under Drought Stress in F1 Hybrids of Antirrhinum Majus Varieties with Divergent Flower Colors.” <i>American Journal of Botany</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/ajb2.70129\">https://doi.org/10.1002/ajb2.70129</a>.","mla":"Fuster‐Calvo, Alexandre, et al. “Reduced Fitness under Drought Stress in F1 Hybrids of Antirrhinum Majus Varieties with Divergent Flower Colors.” <i>American Journal of Botany</i>, vol. 112, no. 12, e70129, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/ajb2.70129\">10.1002/ajb2.70129</a>.","apa":"Fuster‐Calvo, A., Jaworski, C. C., Ellis, T., &#38; Baskett, C. (2025). Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors. <i>American Journal of Botany</i>. Wiley. <a href=\"https://doi.org/10.1002/ajb2.70129\">https://doi.org/10.1002/ajb2.70129</a>","ista":"Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. 2025. Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors. American Journal of Botany. 112(12), e70129.","ama":"Fuster‐Calvo A, Jaworski CC, Ellis T, Baskett C. Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors. <i>American Journal of Botany</i>. 2025;112(12). doi:<a href=\"https://doi.org/10.1002/ajb2.70129\">10.1002/ajb2.70129</a>","ieee":"A. Fuster‐Calvo, C. C. Jaworski, T. Ellis, and C. Baskett, “Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors,” <i>American Journal of Botany</i>, vol. 112, no. 12. Wiley, 2025.","short":"A. Fuster‐Calvo, C.C. Jaworski, T. Ellis, C. Baskett, American Journal of Botany 112 (2025)."},"quality_controlled":"1","scopus_import":"1","day":"01","related_material":{"link":[{"url":"https://github.com/Alex-Fuster/hybrids_drought","relation":"software"}]},"intvolume":"       112","doi":"10.1002/ajb2.70129","abstract":[{"text":"Premise: What maintains trait divergence in the face of gene flow? Two varieties of wild snapdragon (Antirrhinum majus) characterized by divergent flower color hybridize in their native range. Selection on flower color genes is indicated by sharp clines, but the selective agents have not been demonstrated. Although previous work has focused on pollinators, pigmentation genes can also contribute to abiotic stress tolerance. We hypothesized that pigmentation in A. majus mediates stress tolerance, which could contribute to hybrid zone maintenance through parental niche divergence or hybrid maladaptation. Specifically, we tested whether morphotype mediates drought tolerance in an experiment comparing magenta-flowered var. pseudomajus, yellow-flowered var. striatum, and their pink-flowered hybrid cross.\r\nMethods: We experimentally compared drought tolerance of each morphotype from allopatric crosses within and between varieties using three greenhouse treatments. Control plants were watered as needed, while drought-treated plants were watered half as often, either from the transplant stage (“early” drought), or from flowering onset (“late” drought).\r\nResults: Parental morphotypes responded identically to drought in fitness and most phenotypic traits. However, hybrids had lower survival (14%) under late drought stress than parental morphotypes (70%). All hybrids that flowered in the late drought treatment died, compared to ~20% of flowering parental morphotypes.\r\nConclusions: Hybrid maladaptation to abiotic stress could potentially contribute to flower color divergence in the face of gene flow in A. majus. Further research should test the relevance of our results to field conditions and explicitly probe the role of flower color genes in drought tolerance.","lang":"eng"}],"article_number":"e70129","article_processing_charge":"No","OA_type":"closed access","month":"12","project":[{"name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"article_type":"original","publisher":"Wiley","type":"journal_article","publication_status":"published","oa_version":"None","publication_identifier":{"issn":["0002-9122"],"eissn":["1537-2197"]},"_id":"20869","ec_funded":1,"pmid":1,"title":"Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors","department":[{"_id":"NiBa"}],"date_updated":"2026-01-05T11:56:22Z"},{"date_updated":"2026-01-05T11:49:54Z","article_processing_charge":"No","title":"Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond","abstract":[{"text":"RNA sequencing (RNA-seq) methodologies have evolved rapidly, offering powerful tools to study gene expression, transcriptome dynamics, and molecular mechanisms in various biological contexts. However, the complexity of these approaches poses challenges in data interpretation, sensitivity, and applicability. This chapter provides a comprehensive overview of RNA-seq methodologies, highlighting their advantages, limitations, and applications, particularly in cardiovascular research. Bulk RNA sequencing enables high-throughput gene expression profiling but lacks the resolution to capture cellular heterogeneity and spatial context. Direct RNA sequencing preserves native RNA modifications, offering insights into post-transcriptional regulation, though it remains technically challenging. Single-cell RNA sequencing (scRNA-seq) and spatial transcriptomics (ST) bridge these gaps by resolving transcriptomic complexity at the cellular level and within tissue architecture, providing crucial insights into disease mechanisms such as atherosclerosis. By summarizing the strengths and limitations of these methodologies, this chapter aims to guide researchers in selecting the most suitable transcriptomic approach for their studies, ultimately advancing precision medicine and biomarker discovery in cardiovascular disease.","lang":"eng"}],"department":[{"_id":"Bio"}],"editor":[{"first_name":"Yvan","full_name":"Devaux, Yvan","last_name":"Devaux"},{"first_name":"Miron","last_name":"Sopic","full_name":"Sopic, Miron"}],"_id":"20870","doi":"10.1016/b978-0-443-33064-3.00016-5","quality_controlled":"1","date_created":"2025-12-29T12:16:22Z","citation":{"chicago":"Stopa, Victoria, Miron Sopić, Guanliang Li, Judith Sluimer, José Basílio, Sander W. van der Laan, David P. Kreil, Yvan Devaux, and Bernhard Hochreiter. “Essentials of Transcriptomic Methods: Navigating through RNA Sequencing and Beyond.” In <i>Transcriptomics in Atherosclerosis</i>, edited by Yvan Devaux and Miron Sopic, 131–72. Elsevier, 2025. <a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">https://doi.org/10.1016/b978-0-443-33064-3.00016-5</a>.","apa":"Stopa, V., Sopić, M., Li, G., Sluimer, J., Basílio, J., van der Laan, S. W., … Hochreiter, B. (2025). Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond. In Y. Devaux &#38; M. Sopic (Eds.), <i>Transcriptomics in Atherosclerosis</i> (pp. 131–172). Elsevier. <a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">https://doi.org/10.1016/b978-0-443-33064-3.00016-5</a>","mla":"Stopa, Victoria, et al. “Essentials of Transcriptomic Methods: Navigating through RNA Sequencing and Beyond.” <i>Transcriptomics in Atherosclerosis</i>, edited by Yvan Devaux and Miron Sopic, Elsevier, 2025, pp. 131–72, doi:<a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">10.1016/b978-0-443-33064-3.00016-5</a>.","ista":"Stopa V, Sopić M, Li G, Sluimer J, Basílio J, van der Laan SW, Kreil DP, Devaux Y, Hochreiter B. 2025.Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond. In: Transcriptomics in Atherosclerosis. , 131–172.","short":"V. Stopa, M. Sopić, G. Li, J. Sluimer, J. Basílio, S.W. van der Laan, D.P. Kreil, Y. Devaux, B. Hochreiter, in:, Y. Devaux, M. Sopic (Eds.), Transcriptomics in Atherosclerosis, Elsevier, 2025, pp. 131–172.","ieee":"V. Stopa <i>et al.</i>, “Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond,” in <i>Transcriptomics in Atherosclerosis</i>, Y. Devaux and M. Sopic, Eds. Elsevier, 2025, pp. 131–172.","ama":"Stopa V, Sopić M, Li G, et al. Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond. In: Devaux Y, Sopic M, eds. <i>Transcriptomics in Atherosclerosis</i>. Elsevier; 2025:131-172. doi:<a href=\"https://doi.org/10.1016/b978-0-443-33064-3.00016-5\">10.1016/b978-0-443-33064-3.00016-5</a>"},"scopus_import":"1","day":"24","publication_identifier":{"isbn":["9780443330643"]},"type":"book_chapter","publication_status":"published","publisher":"Elsevier","oa_version":"None","year":"2025","publication":"Transcriptomics in Atherosclerosis","language":[{"iso":"eng"}],"page":"131-172","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-10-24T00:00:00Z","month":"10","author":[{"last_name":"Stopa","full_name":"Stopa, Victoria","first_name":"Victoria"},{"first_name":"Miron","last_name":"Sopić","full_name":"Sopić, Miron"},{"full_name":"Li, Guanliang","last_name":"Li","first_name":"Guanliang"},{"first_name":"Judith","full_name":"Sluimer, Judith","last_name":"Sluimer"},{"last_name":"Basílio","full_name":"Basílio, José","first_name":"José"},{"first_name":"Sander W.","full_name":"van der Laan, Sander W.","last_name":"van der Laan"},{"last_name":"Kreil","full_name":"Kreil, David P.","first_name":"David P."},{"last_name":"Devaux","full_name":"Devaux, Yvan","first_name":"Yvan"},{"last_name":"Hochreiter","id":"e6cab3de-17f6-11ed-9210-c1e42e045e9d","full_name":"Hochreiter, Bernhard","first_name":"Bernhard"}],"OA_type":"closed access","status":"public"},{"date_updated":"2026-01-05T11:38:41Z","article_processing_charge":"No","department":[{"_id":"GradSch"}],"abstract":[{"lang":"eng","text":"Evading imminent predator threat is critical for survival. Effective defensive strategies can vary, even between closely related species. However, the neural basis of such species-specific behaviours is still poorly understood. Here we find that two sister species of deer mice (genus Peromyscus) show different responses to the same looming stimulus: P. maniculatus, which occupies densely vegetated habitats, predominantly escapes, while the open field specialist, P. polionotus, briefly freezes. This difference arises from species-specific escape thresholds, is largely context-independent, and can be triggered by both visual and auditory threat stimuli. Using immunohistochemistry and electrophysiological recordings, we find that although visual threat activates the superior colliculus in both species, the role of the dorsal periaqueductal gray (dPAG) in driving behaviour differs. While dPAG activity scales with running speed in P. maniculatus, neural activity in the dPAG of P. polionotus correlates poorly with movement, including during visually triggered escape. Moreover, optogenetic activation of dPAG neurons elicits acceleration in P. maniculatus but not P. polionotus, while their chemogenetic inhibition during a looming stimulus delays escape onset in P. maniculatus to match that of P. polionotus. Together, we trace species-specific escape thresholds to a central circuit node, downstream of peripheral sensory neurons, localizing an ecologically relevant behavioural difference to a specific region of the mammalian brain."}],"title":"The neural basis of species-specific defensive behaviour in Peromyscus mice","oa":1,"related_material":{"record":[{"id":"20101","relation":"used_in_publication","status":"public"}]},"_id":"20883","doi":"10.5061/DRYAD.Q2BVQ83XC","OA_place":"repository","date_created":"2025-12-30T07:36:29Z","citation":{"mla":"Felix, Baier, et al. <i>The Neural Basis of Species-Specific Defensive Behaviour in Peromyscus Mice</i>. Dryad, 2025, doi:<a href=\"https://doi.org/10.5061/DRYAD.Q2BVQ83XC\">10.5061/DRYAD.Q2BVQ83XC</a>.","apa":"Felix, B., Reinhard, K., Nuttin, B., Sans Dublanc, A., Liu, C., Tong, V., … Hoekstra, H. (2025). The neural basis of species-specific defensive behaviour in Peromyscus mice. Dryad. <a href=\"https://doi.org/10.5061/DRYAD.Q2BVQ83XC\">https://doi.org/10.5061/DRYAD.Q2BVQ83XC</a>","chicago":"Felix, Baier, Katja Reinhard, Bram Nuttin, Arnau Sans Dublanc, Chen Liu, Victoria Tong, Julie Stefanie Murmann, Keimpe Wierda, Karl Farrow, and Hopi Hoekstra. “The Neural Basis of Species-Specific Defensive Behaviour in Peromyscus Mice.” Dryad, 2025. <a href=\"https://doi.org/10.5061/DRYAD.Q2BVQ83XC\">https://doi.org/10.5061/DRYAD.Q2BVQ83XC</a>.","ista":"Felix B, Reinhard K, Nuttin B, Sans Dublanc A, Liu C, Tong V, Murmann JS, Wierda K, Farrow K, Hoekstra H. 2025. The neural basis of species-specific defensive behaviour in Peromyscus mice, Dryad, <a href=\"https://doi.org/10.5061/DRYAD.Q2BVQ83XC\">10.5061/DRYAD.Q2BVQ83XC</a>.","short":"B. Felix, K. Reinhard, B. Nuttin, A. Sans Dublanc, C. Liu, V. Tong, J.S. Murmann, K. Wierda, K. Farrow, H. Hoekstra, (2025).","ieee":"B. Felix <i>et al.</i>, “The neural basis of species-specific defensive behaviour in Peromyscus mice.” Dryad, 2025.","ama":"Felix B, Reinhard K, Nuttin B, et al. The neural basis of species-specific defensive behaviour in Peromyscus mice. 2025. doi:<a href=\"https://doi.org/10.5061/DRYAD.Q2BVQ83XC\">10.5061/DRYAD.Q2BVQ83XC</a>"},"day":"23","publisher":"Dryad","type":"research_data_reference","year":"2025","oa_version":"Submitted Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-06-23T00:00:00Z","month":"06","author":[{"first_name":"Baier","full_name":"Felix, Baier","last_name":"Felix"},{"first_name":"Katja","full_name":"Reinhard, Katja","last_name":"Reinhard"},{"first_name":"Bram","last_name":"Nuttin","full_name":"Nuttin, Bram"},{"first_name":"Arnau","full_name":"Sans Dublanc, Arnau","last_name":"Sans Dublanc"},{"full_name":"Liu, Chen","last_name":"Liu","first_name":"Chen"},{"first_name":"Victoria","full_name":"Tong, Victoria","last_name":"Tong"},{"first_name":"Julie Stefanie","full_name":"Murmann, Julie Stefanie","id":"1d390868-f128-11eb-9611-a0ca5f7833b5","last_name":"Murmann"},{"last_name":"Wierda","full_name":"Wierda, Keimpe","first_name":"Keimpe"},{"full_name":"Farrow, Karl","last_name":"Farrow","first_name":"Karl"},{"full_name":"Hoekstra, Hopi","last_name":"Hoekstra","first_name":"Hopi"}],"status":"public","main_file_link":[{"url":"https://doi.org/10.5061/dryad.q2bvq83xc","open_access":"1"}],"OA_type":"hybrid"},{"acknowledgement":"L.E. and J.H. are supported by the ERC Advanced Grant “RMTBeyond” No. 101020331. Moreover, J.H. acknowledges (partial) financial support by the ERC Consolidator Grant “ProbQuant” (jointly with the Swiss State Secretariat for Education, Research and Innovation). C.V. was (partially) supported by the German Academic Scholarship Foundation and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – TRR 352 – Project-ID 470903074. Moreover, C.V. acknowledges (partial) financial support by the ERC Starting Grant “FermiMath\" No. 101040991 and the ERC Consolidator Grant “RAMBAS” No. 10104424, funded by the European Union. Open access funding provided by Institute of Science and Technology (IST Austria).","status":"public","author":[{"first_name":"László","orcid":"0000-0001-5366-9603","full_name":"Erdös, László","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Henheik, Sven Joscha","orcid":"0000-0003-1106-327X","last_name":"Henheik","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","first_name":"Sven Joscha"},{"first_name":"Cornelia","last_name":"Vogel","id":"1cd0554a-ea28-11f0-9f40-ff76440883cd","full_name":"Vogel, Cornelia"}],"external_id":{"pmid":["41459414"]},"volume":116,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-12-26T00:00:00Z","publication":"Letters in Mathematical Physics","language":[{"iso":"eng"}],"year":"2025","corr_author":"1","day":"26","scopus_import":"1","date_created":"2026-01-04T23:01:33Z","citation":{"ama":"Erdös L, Henheik SJ, Vogel C. Normal typicality and dynamical typicality for a random block-band matrix model. <i>Letters in Mathematical Physics</i>. 2025;116. doi:<a href=\"https://doi.org/10.1007/s11005-025-02037-5\">10.1007/s11005-025-02037-5</a>","short":"L. Erdös, S.J. Henheik, C. Vogel, Letters in Mathematical Physics 116 (2025).","ieee":"L. Erdös, S. J. Henheik, and C. Vogel, “Normal typicality and dynamical typicality for a random block-band matrix model,” <i>Letters in Mathematical Physics</i>, vol. 116. Springer Nature, 2025.","ista":"Erdös L, Henheik SJ, Vogel C. 2025. Normal typicality and dynamical typicality for a random block-band matrix model. Letters in Mathematical Physics. 116, 5.","mla":"Erdös, László, et al. “Normal Typicality and Dynamical Typicality for a Random Block-Band Matrix Model.” <i>Letters in Mathematical Physics</i>, vol. 116, 5, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1007/s11005-025-02037-5\">10.1007/s11005-025-02037-5</a>.","chicago":"Erdös, László, Sven Joscha Henheik, and Cornelia Vogel. “Normal Typicality and Dynamical Typicality for a Random Block-Band Matrix Model.” <i>Letters in Mathematical Physics</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s11005-025-02037-5\">https://doi.org/10.1007/s11005-025-02037-5</a>.","apa":"Erdös, L., Henheik, S. J., &#38; Vogel, C. (2025). Normal typicality and dynamical typicality for a random block-band matrix model. <i>Letters in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11005-025-02037-5\">https://doi.org/10.1007/s11005-025-02037-5</a>"},"quality_controlled":"1","doi":"10.1007/s11005-025-02037-5","intvolume":"       116","oa":1,"abstract":[{"lang":"eng","text":"We prove normal typicality and dynamical typicality for a (centered) random block-band matrix model with block-dependent variances. A key feature of our model is that we achieve intermediate equilibration times, an aspect that has not been proven rigorously in any model before. Our proof builds on recently established concentration estimates for products of resolvents of Wigner type random matrices (Erdős and Riabov in Commun Math Phys 405(12): 282, 2024) and an intricate analysis of the deterministic approximation."}],"ddc":["510"],"has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","article_number":"5","PlanS_conform":"1","main_file_link":[{"url":"https://doi.org/10.1007/s11005-025-02037-5","open_access":"1"}],"OA_type":"hybrid","article_type":"original","project":[{"grant_number":"101020331","call_identifier":"H2020","name":"Random matrices beyond Wigner-Dyson-Mehta","_id":"62796744-2b32-11ec-9570-940b20777f1d"}],"month":"12","oa_version":"Published Version","type":"journal_article","publication_status":"epub_ahead","publisher":"Springer Nature","publication_identifier":{"issn":["0377-9017"],"eissn":["1573-0530"]},"OA_place":"publisher","pmid":1,"ec_funded":1,"_id":"20925","department":[{"_id":"LaEr"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Normal typicality and dynamical typicality for a random block-band matrix model","date_updated":"2026-01-05T11:22:25Z"},{"date_updated":"2026-01-05T11:34:21Z","department":[{"_id":"GradSch"},{"_id":"BiCh"}],"title":"A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials","_id":"20926","pmid":1,"OA_place":"repository","publication_identifier":{"eissn":["1549-9626"],"issn":["1549-9618"]},"type":"journal_article","publication_status":"published","publisher":"American Chemical Society","oa_version":"Preprint","arxiv":1,"month":"12","article_type":"original","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2507.14302"}],"OA_type":"green","article_processing_charge":"No","abstract":[{"lang":"eng","text":"Most current machine learning interatomic potentials (MLIPs) rely on short-range approximations, without explicit treatment of long-range electrostatics. To address this, we recently developed the Latent Ewald Summation (LES) method, which infers electrostatic interactions, polarization, and Born effective charges (BECs), just by learning from energy and force training data. Here, we present LES as a standalone library, compatible with any short-range MLIP, and demonstrate its integration with methods such as MACE, NequIP, Allegro, CACE, CHGNet, and UMA. We benchmark LES-enhanced models on distinct systems, including bulk water, polar dipeptides, and gold dimer adsorption on defective substrates, and show that LES not only captures correct electrostatics but also improves accuracy. Additionally, we scale LES to large and chemically diverse data by training MACELES-OFF on the SPICE set containing molecules and clusters, making a universal MLIP with electrostatics for organic systems, including biomolecules. MACELES-OFF is more accurate than its short-range counterpart (MACE-OFF) trained on the same data set, predicts dipoles and BECs reliably, and has better descriptions of bulk liquids. By enabling efficient long-range electrostatics without directly training on electrical properties, LES paves the way for electrostatic foundation MLIPs."}],"oa":1,"intvolume":"        21","doi":"10.1021/acs.jctc.5c01400","date_created":"2026-01-04T23:01:33Z","citation":{"ista":"Kim D, Wang X, Vargas S, Zhong P, King DS, Inizan TJ, Cheng B. 2025. A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials. Journal of Chemical Theory and Computation. 21(24), 12709–12724.","chicago":"Kim, Dongjin, Xiaoyu Wang, Santiago Vargas, Peichen Zhong, Daniel S. King, Theo Jaffrelot Inizan, and Bingqing Cheng. “A Universal Augmentation Framework for Long-Range Electrostatics in Machine Learning Interatomic Potentials.” <i>Journal of Chemical Theory and Computation</i>. American Chemical Society, 2025. <a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">https://doi.org/10.1021/acs.jctc.5c01400</a>.","apa":"Kim, D., Wang, X., Vargas, S., Zhong, P., King, D. S., Inizan, T. J., &#38; Cheng, B. (2025). A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials. <i>Journal of Chemical Theory and Computation</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">https://doi.org/10.1021/acs.jctc.5c01400</a>","mla":"Kim, Dongjin, et al. “A Universal Augmentation Framework for Long-Range Electrostatics in Machine Learning Interatomic Potentials.” <i>Journal of Chemical Theory and Computation</i>, vol. 21, no. 24, American Chemical Society, 2025, pp. 12709–24, doi:<a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">10.1021/acs.jctc.5c01400</a>.","ama":"Kim D, Wang X, Vargas S, et al. A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials. <i>Journal of Chemical Theory and Computation</i>. 2025;21(24):12709-12724. doi:<a href=\"https://doi.org/10.1021/acs.jctc.5c01400\">10.1021/acs.jctc.5c01400</a>","short":"D. Kim, X. Wang, S. Vargas, P. Zhong, D.S. King, T.J. Inizan, B. Cheng, Journal of Chemical Theory and Computation 21 (2025) 12709–12724.","ieee":"D. Kim <i>et al.</i>, “A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials,” <i>Journal of Chemical Theory and Computation</i>, vol. 21, no. 24. American Chemical Society, pp. 12709–12724, 2025."},"quality_controlled":"1","scopus_import":"1","corr_author":"1","day":"10","year":"2025","publication":"Journal of Chemical Theory and Computation","page":"12709-12724","language":[{"iso":"eng"}],"issue":"24","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-12-10T00:00:00Z","volume":21,"author":[{"full_name":"Kim, Dongjin","last_name":"Kim","first_name":"Dongjin"},{"first_name":"Xiaoyu","id":"8dff9c62-32b0-11ee-9fa8-fc73025e10f3","last_name":"Wang","full_name":"Wang, Xiaoyu"},{"first_name":"Santiago","full_name":"Vargas, Santiago","last_name":"Vargas"},{"last_name":"Zhong","full_name":"Zhong, Peichen","first_name":"Peichen"},{"first_name":"Daniel S.","full_name":"King, Daniel S.","last_name":"King"},{"first_name":"Theo Jaffrelot","last_name":"Inizan","full_name":"Inizan, Theo Jaffrelot"},{"first_name":"Bingqing","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","last_name":"Cheng","orcid":"0000-0002-3584-9632","full_name":"Cheng, Bingqing"}],"external_id":{"arxiv":["2507.14302"],"pmid":["41368735 "]},"acknowledgement":"Research reported in this publication was supported by the National Institute Of General Medical Sciences of the National Institutes of Health under Award Number R35GM159986. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. D.K. and B.C. acknowledge funding from Toyota Research Institute Synthesis Advanced Research Challenge. T.J.I., D.S.K. and P.Z. acknowledge funding from BIDMaP Postdoctoral Fellowship. T.J.I. used resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy Office of Science User Facility using NERSC award DOEERCAP0031751 ′GenAI@NERSC’. The authors thank Bowen Deng for valuable discussions on MatGL implementation, and thank Gabor Csanyi for stimulating discussions.","status":"public"},{"volume":112,"external_id":{"arxiv":["2512.05236"]},"author":[{"last_name":"Mandal","full_name":"Mandal, Supriya","first_name":"Supriya"},{"last_name":"Maji","id":"76bc9e9f-ba0b-11ee-8184-90edabd17a58","full_name":"Maji, Krishnendu","first_name":"Krishnendu"},{"first_name":"Lucky","last_name":"Kapoor","id":"84b9700b-15b2-11ec-abd3-831089e67615","full_name":"Kapoor, Lucky","orcid":"0000-0001-8319-2148"},{"full_name":"Sasmal, Souvik","last_name":"Sasmal","first_name":"Souvik"},{"first_name":"Soham","full_name":"Manni, Soham","last_name":"Manni"},{"full_name":"Jesudasan, John","last_name":"Jesudasan","first_name":"John"},{"first_name":"Pratap","full_name":"Raychaudhuri, Pratap","last_name":"Raychaudhuri"},{"last_name":"Thamizhavel","full_name":"Thamizhavel, Arumugam","first_name":"Arumugam"},{"first_name":"Mandar M.","last_name":"Deshmukh","full_name":"Deshmukh, Mandar M."}],"date_published":"2025-12-19T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank R. Vijayaraghavan, V. Singh, A. Kamra, A. Barman, M. Patankar, S. Kundu, S. Hazra, S. Sahu, A. Riswadkar, A. Bhattacharjee, and S. Das for helpful discussions and experimental assistance. We acknowledge the Swarnajayanti Fellowship of the Department of Science and Technology (for M.M.D.), DST Nanomission Grant No. SR/NM/NS-45/2016, SERB SUPRA Grant No. SPR/2019/001247, ONRG Grant No. N62909–18-1–2058, and the Department of Atomic Energy of the Government of India Grant No. 12-R&D-TFR5.10–0100 for support.","status":"public","year":"2025","issue":"21","language":[{"iso":"eng"}],"publication":"Physical Review B","doi":"10.1103/bdd1-b8ys","related_material":{"record":[{"id":"20940","relation":"research_data","status":"public"}]},"intvolume":"       112","day":"19","citation":{"ista":"Mandal S, Maji K, Kapoor L, Sasmal S, Manni S, Jesudasan J, Raychaudhuri P, Thamizhavel A, Deshmukh MM. 2025. Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system. Physical Review B. 112(21), 214443.","chicago":"Mandal, Supriya, Krishnendu Maji, Lucky Kapoor, Souvik Sasmal, Soham Manni, John Jesudasan, Pratap Raychaudhuri, Arumugam Thamizhavel, and Mandar M. Deshmukh. “Cavity Based Sensing of Antiferromagnetic Canting and Nonzero-Momentum Spin Waves in a van Der Waals Cavity-Magnon-Polariton System.” <i>Physical Review B</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/bdd1-b8ys\">https://doi.org/10.1103/bdd1-b8ys</a>.","apa":"Mandal, S., Maji, K., Kapoor, L., Sasmal, S., Manni, S., Jesudasan, J., … Deshmukh, M. M. (2025). Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system. <i>Physical Review B</i>. American Physical Society. <a href=\"https://doi.org/10.1103/bdd1-b8ys\">https://doi.org/10.1103/bdd1-b8ys</a>","mla":"Mandal, Supriya, et al. “Cavity Based Sensing of Antiferromagnetic Canting and Nonzero-Momentum Spin Waves in a van Der Waals Cavity-Magnon-Polariton System.” <i>Physical Review B</i>, vol. 112, no. 21, 214443, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/bdd1-b8ys\">10.1103/bdd1-b8ys</a>.","ama":"Mandal S, Maji K, Kapoor L, et al. Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system. <i>Physical Review B</i>. 2025;112(21). doi:<a href=\"https://doi.org/10.1103/bdd1-b8ys\">10.1103/bdd1-b8ys</a>","ieee":"S. Mandal <i>et al.</i>, “Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system,” <i>Physical Review B</i>, vol. 112, no. 21. American Physical Society, 2025.","short":"S. Mandal, K. Maji, L. Kapoor, S. Sasmal, S. Manni, J. Jesudasan, P. Raychaudhuri, A. Thamizhavel, M.M. Deshmukh, Physical Review B 112 (2025)."},"date_created":"2026-01-04T23:01:34Z","quality_controlled":"1","scopus_import":"1","article_number":"214443","article_processing_charge":"No","oa":1,"abstract":[{"lang":"eng","text":"Cavity-magnon polaritons are hybrid excitations from the interaction between cavity photons and magnons, the quanta of collective spin oscillations. Along with the tunability of the magnon-photon coupling strength, fast information transfer and conversion speed are desired in hybrid devices. This can be achieved utilizing the propagating nature of spin waves with nonzero momentum for their ultrafast time dynamics and reduced ohmic dissipation. Antiferromagnets are particularly interesting as hosts for magnons since stray-field interactions are minimized and they support multiple modes with distinctive magnetic-field behavior across the phase diagram. Chromium trichloride (CrCl3) is a van der Waals layered antiferromagnet having a strong easy-plane anisotropy and a weak in-plane easy-axis anisotropy. Despite some magnetic resonance studies, the impact of magnetic reorientation of spins in CrCl3 on the cavity-magnon-polariton interaction strength as a function of magnetic field remains largely unexplored. In this study, we investigate the coupling between magnons in CrCl3 and photons in a coplanar waveguide resonator as a function of magnetic field. In particular, we find that the magnon-photon coupling strength varies nonmonotonically and distinctly with the magnetic field for the acoustic and the optical magnons, which can be utilized to tune the magnon-photon coupling strength using an external magnetic field as a knob. We find the signature of spin-flop transition in the two harmonics of the cavity due to a stronger dispersive coupling between optical magnons and cavity photons at lower fields. Additionally, we find standing modes formed by spin waves with nonzero momentum associated with the two hybrid magnons when the external field is applied at an angle with the crystal plane. These modes do not undergo substantial coupling with the cavity mode unlike the antiferromagnetic modes and can be used as low-loss propagation channels in hybrid devices."}],"article_type":"original","month":"12","OA_type":"green","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2512.05236","open_access":"1"}],"oa_version":"Preprint","publication_status":"published","type":"journal_article","publisher":"American Physical Society","arxiv":1,"_id":"20927","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"OA_place":"repository","date_updated":"2026-01-05T10:07:04Z","department":[{"_id":"MaIb"},{"_id":"JoFi"}],"title":"Cavity based sensing of antiferromagnetic canting and nonzero-momentum spin waves in a van der Waals cavity-magnon-polariton system"},{"department":[{"_id":"BjHo"}],"title":"Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation","date_updated":"2026-01-05T10:54:15Z","publication_identifier":{"eissn":["1089-7666"],"issn":["1070-6631"]},"_id":"20928","type":"journal_article","publisher":"AIP Publishing","publication_status":"published","oa_version":"None","OA_type":"closed access","month":"12","article_type":"original","abstract":[{"lang":"eng","text":"The current work focuses on the performance of hydrodynamics and mass transfer in a microchannel. A hydrodynamic model is developed for a gas–liquid (CO2–water) system and slug flow pattern. For the first time in literature, a concept of pulsating velocity input is introduced in an enhanced cross-T-junction microchannel to study the mass transfer using the physical absorption mechanism in ANSYS FLUENT R2 2024. The mass transfer model is associated with the hydrodynamic model and some user-defined functions in FLUENT. This work demonstrates that incorporating obstructions and applying trapezoidal and sinusoidal wave inputs improve the CO2 absorption rate. The obtained data are further compared with the plain T-junction microchannel in terms of mass transfer coefficient. Solubility of CO2 in three different solvents (ethyl alcohol, water, and ethylene glycol) has been revealed in an enhanced cross T-junction microchannel at two different temperatures, i.e., 298.15 and 303.15 K. The numerical simulations illustrate that an increase in temperature has an adverse effect on the mass transfer rate."}],"article_processing_charge":"No","article_number":"122012","scopus_import":"1","date_created":"2026-01-04T23:01:34Z","citation":{"ieee":"B. Khatoon, V. K. Chaudhary, S. Kamil, S. U. Hasan, and M. S. Alam, “Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation,” <i>Physics of Fluids</i>, vol. 37, no. 12. AIP Publishing, 2025.","short":"B. Khatoon, V.K. Chaudhary, S. Kamil, S.U. Hasan, M.S. Alam, Physics of Fluids 37 (2025).","ama":"Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation. <i>Physics of Fluids</i>. 2025;37(12). doi:<a href=\"https://doi.org/10.1063/5.0303132\">10.1063/5.0303132</a>","apa":"Khatoon, B., Chaudhary, V. K., Kamil, S., Hasan, S. U., &#38; Alam, M. S. (2025). Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation. <i>Physics of Fluids</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/5.0303132\">https://doi.org/10.1063/5.0303132</a>","mla":"Khatoon, Bushra, et al. “Enhanced Mass Transfer in Microgeometry Using Pulsating Velocity Inputs: Hydrodynamic Analysis and Numerical Simulation.” <i>Physics of Fluids</i>, vol. 37, no. 12, 122012, AIP Publishing, 2025, doi:<a href=\"https://doi.org/10.1063/5.0303132\">10.1063/5.0303132</a>.","chicago":"Khatoon, Bushra, Vikas K. Chaudhary, Shoaib Kamil, Shabih Ul Hasan, and M. Siraj Alam. “Enhanced Mass Transfer in Microgeometry Using Pulsating Velocity Inputs: Hydrodynamic Analysis and Numerical Simulation.” <i>Physics of Fluids</i>. AIP Publishing, 2025. <a href=\"https://doi.org/10.1063/5.0303132\">https://doi.org/10.1063/5.0303132</a>.","ista":"Khatoon B, Chaudhary VK, Kamil S, Hasan SU, Alam MS. 2025. Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation. Physics of Fluids. 37(12), 122012."},"quality_controlled":"1","day":"01","intvolume":"        37","doi":"10.1063/5.0303132","language":[{"iso":"eng"}],"publication":"Physics of Fluids","issue":"12","year":"2025","status":"public","acknowledgement":"The authors are thankful for the financial support provided by the Ministry of Education, India, and MNNIT Allahabad, as well as for the necessary equipment, computing facilities, and overall support to carry out this study.","date_published":"2025-12-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Khatoon","full_name":"Khatoon, Bushra","first_name":"Bushra"},{"last_name":"Chaudhary","full_name":"Chaudhary, Vikas K.","first_name":"Vikas K."},{"first_name":"Shoaib","id":"185a19af-dc7d-11ea-9b2f-8eb2201959e9","last_name":"Kamil","full_name":"Kamil, Shoaib"},{"full_name":"Hasan, Shabih Ul","last_name":"Hasan","first_name":"Shabih Ul"},{"last_name":"Alam","full_name":"Alam, M. Siraj","first_name":"M. Siraj"}],"volume":37},{"language":[{"iso":"eng"}],"publication":"Astronomy & Astrophysics","year":"2025","acknowledgement":"We thank the referee for their suggestions and comments, which helped us improve the quality and clarity of the paper. JLGM and EV acknowledge the support from the Spanish Ministry of Science and Innovation/State Agency of Research (MCIN/AEI) under the grant PID2021-127289-NB-I00. ST acknowledges the funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No. 101034413. AJM acknowledges support from the Swedish National Space Agency (Career Grant 2023-00146) and from the Swedish Research Council (Project Grant 2022-04043). JLGM also sincerely thanks AMP for his careful final reading of this manuscript. This work has made use of data from the European Space Agency (ESA) mission Gaia (https://www.cosmos.esa.int/gaia), processed by the Gaia Data Processing and Analysis Consortium (DPAC). Funding for the DPAC has been provided by national institutions, in particular the institutions participating in the Gaia Multilateral Agreement. We acknowledge the use of the public data products from RAVE (https://www.rave-survey.org), GALAH (https://galah-survey.org), APOGEE ((https://www.sdss.org) and LAMOST (http://www.lamost.org) surveys. This research has also made use of the SIMBAD database and the VizieR catalogue access tool, operated at CDS, Strasbourg, France, as well as the NASA Astrophysics Data System Bibliographic Services and the arXiv pre-print server operated by Cornell University. Computational analyses in this work relied extensively on the NumPy and SciPy libraries for numerical computing, matplotlib and seaborn for data visualization, and the Gala package for Galactic dynamics. This work also made use of Astropy, a community-developed core PYTHON package and an ecosystem of tools and resources for astronomy. We thank the developers and maintainers of these open-source resources for their invaluable contributions to the astronomical community.","status":"public","volume":704,"author":[{"last_name":"Gragera-Más","full_name":"Gragera-Más, J. L.","first_name":"J. L."},{"first_name":"Santiago","id":"a8df4360-4328-11ee-8f1a-e502d0c83fc2","last_name":"Torres Rodriguez","full_name":"Torres Rodriguez, Santiago","orcid":"0000-0002-3150-8988"},{"full_name":"Mustill, A. J.","last_name":"Mustill","first_name":"A. J."},{"first_name":"E.","last_name":"Villaver","full_name":"Villaver, E."}],"external_id":{"arxiv":["2510.02509"]},"date_published":"2025-12-01T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"success":1,"file_name":"2025_AstronomyAstrophysics_GrageraMas.pdf","file_size":11021467,"checksum":"2fb4d5a1603043aa7931a31f2c180877","date_created":"2026-01-05T11:06:16Z","content_type":"application/pdf","access_level":"open_access","date_updated":"2026-01-05T11:06:16Z","file_id":"20942","creator":"dernst","relation":"main_file"}],"oa":1,"file_date_updated":"2026-01-05T11:06:16Z","abstract":[{"text":"Context. Beta Pictoris is an A-type star that hosts a complex planetary system with two massive gas giants and a prominent debris disc. Variable absorption lines in its stellar spectrum have been interpreted as signatures of exocomets – comet-like bodies transiting the star. Stellar flybys can gravitationally perturb objects in the outer comet reservoir, altering their orbits and potentially injecting them into the inner system, thereby triggering exocomet showers.\r\nAims. We assessed the contribution of stellar flybys to the observed exocomet activity by reconstructing the stellar encounter history of β Pictoris in the past and future.\r\nMethods. We used Gaia DR3 data, supplemented with radial velocities from complementary spectroscopic surveys, to compile a catalogue of stars currently within 80 pc of β Pictoris. Their orbits were integrated backwards and forwards in time in an axisymmetric Galactic potential (via the GALA package) to identify encounters within 2 pc of the system.\r\nResults. We identified 99 416 stars currently within 80 pc of β Pictoris with resolved kinematics. Among these, 49 stars (including the eight components of five binaries) encounter β Pictoris within 2 pc between –1.5 Myr and +2 Myr. For four of the binaries, the centre-of-mass trajectories also pass within 2 pc. We estimated the sample to be more than 60% complete within 0.5 Myr of today.\r\nConclusions. Despite β Pictoris being the eponym of its famous moving group, none of the identified encounters involved its moving group members; all are unrelated field stars. We found no encounter capable of shaping the observed disc structures, although stellar flybys may contribute to the long-term evolution of an Oort Cloud-like structure. Our catalogue constitutes the most complete reconstruction of the β Pictoris encounter history to date and provides a robust foundation for future dynamical simulations.","lang":"eng"}],"ddc":["520"],"DOAJ_listed":"1","has_accepted_license":"1","article_number":"A237","article_processing_charge":"No","day":"01","citation":{"ieee":"J. L. Gragera-Más, S. Torres Rodriguez, A. J. Mustill, and E. Villaver, “A kinematic history of stellar encounters with Beta Pictoris,” <i>Astronomy &#38; Astrophysics</i>, vol. 704. EDP Sciences, 2025.","short":"J.L. Gragera-Más, S. Torres Rodriguez, A.J. Mustill, E. Villaver, Astronomy &#38; Astrophysics 704 (2025).","ama":"Gragera-Más JL, Torres Rodriguez S, Mustill AJ, Villaver E. A kinematic history of stellar encounters with Beta Pictoris. <i>Astronomy &#38; Astrophysics</i>. 2025;704. doi:<a href=\"https://doi.org/10.1051/0004-6361/202555940\">10.1051/0004-6361/202555940</a>","ista":"Gragera-Más JL, Torres Rodriguez S, Mustill AJ, Villaver E. 2025. A kinematic history of stellar encounters with Beta Pictoris. Astronomy &#38; Astrophysics. 704, A237.","mla":"Gragera-Más, J. L., et al. “A Kinematic History of Stellar Encounters with Beta Pictoris.” <i>Astronomy &#38; Astrophysics</i>, vol. 704, A237, EDP Sciences, 2025, doi:<a href=\"https://doi.org/10.1051/0004-6361/202555940\">10.1051/0004-6361/202555940</a>.","chicago":"Gragera-Más, J. L., Santiago Torres Rodriguez, A. J. Mustill, and E. Villaver. “A Kinematic History of Stellar Encounters with Beta Pictoris.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2025. <a href=\"https://doi.org/10.1051/0004-6361/202555940\">https://doi.org/10.1051/0004-6361/202555940</a>.","apa":"Gragera-Más, J. L., Torres Rodriguez, S., Mustill, A. J., &#38; Villaver, E. (2025). A kinematic history of stellar encounters with Beta Pictoris. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202555940\">https://doi.org/10.1051/0004-6361/202555940</a>"},"quality_controlled":"1","date_created":"2026-01-04T23:01:34Z","scopus_import":"1","doi":"10.1051/0004-6361/202555940","intvolume":"       704","arxiv":1,"oa_version":"Published Version","publisher":"EDP Sciences","publication_status":"published","type":"journal_article","OA_type":"diamond","PlanS_conform":"1","article_type":"original","month":"12","project":[{"grant_number":"101034413","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"LiBu"}],"title":"A kinematic history of stellar encounters with Beta Pictoris","date_updated":"2026-02-16T12:15:07Z","publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"OA_place":"publisher","_id":"20930","ec_funded":1},{"language":[{"iso":"eng"}],"publication":"Astronomy & Astrophysics","year":"2025","status":"public","acknowledgement":"We thank the anonymous referee for their comments on the manuscript, Dario Fritzewski for providing the distribution of fractions of critical rotation for the β Cephei sample, and Zhao Guo for the discussions. The research leading to these results has received funding from the European Research Council (ERC) under the Horizon Europe programme (Synergy Grant agreement N°101071505: 4D-STAR). While partially funded by the European Union, views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. V.V. acknowledges support from the Research Foundation Flanders (FWO) under grant agreement N°1156923N (PhD Fellowship). S.B.D. acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement N°101034413. L.B. gratefully acknowledges support from the European Research Council (ERC) under the Horizon Europe programme (Calcifer; Starting Grant agreement N°101165631). J.B., M.R., S.M. and J.S.G.M have been supported by CNES, focused on the preparation of the PLATO mission. Computations with ESTER and TOP have made use of the HPC resources from the CALMIP supercomputing centre (Grant 2023-P0107). This research made use of the numpy (Harris et al. 2020) and matplotlib (Hunter 2007) Python software packages.","external_id":{"arxiv":["2511.09617"]},"author":[{"first_name":"J. S.G.","full_name":"Mombarg, J. S.G.","last_name":"Mombarg"},{"full_name":"Vanlaer, V.","last_name":"Vanlaer","first_name":"V."},{"id":"9ce7c423-dacf-11ed-8942-e09c6cb27149","last_name":"Das","orcid":"0000-0003-0896-7972","full_name":"Das, Srijan B","first_name":"Srijan B"},{"first_name":"M.","full_name":"Rieutord, M.","last_name":"Rieutord"},{"full_name":"Aerts, C.","last_name":"Aerts","first_name":"C."},{"first_name":"Lisa Annabelle","id":"d9edb345-f866-11ec-9b37-d119b5234501","last_name":"Bugnet","full_name":"Bugnet, Lisa Annabelle","orcid":"0000-0003-0142-4000"},{"full_name":"Mathis, S.","last_name":"Mathis","first_name":"S."},{"first_name":"D. R.","last_name":"Reese","full_name":"Reese, D. R."},{"full_name":"Ballot, J.","last_name":"Ballot","first_name":"J."}],"volume":704,"file":[{"file_size":2620909,"success":1,"file_name":"2025_AstronomyAstrophysics_Mombarg.pdf","content_type":"application/pdf","access_level":"open_access","date_created":"2026-01-05T08:36:28Z","checksum":"d838b4783920c43b7cc866e9cf08b383","date_updated":"2026-01-05T08:36:28Z","relation":"main_file","creator":"dernst","file_id":"20937"}],"date_published":"2025-12-19T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2026-01-05T08:36:28Z","oa":1,"abstract":[{"lang":"eng","text":"Context. Asymmetries in the observed rotational splittings of a multiplet contain information about the star’s rotation profile and internal magnetic field. Moreover, the frequency regularities of multiplets can be used for mode identification. However, to exploit this information, highly accurate theoretical predictions are needed.\r\n\r\nAims. We aim to quantify the difference in the predicted mode asymmetries between a 1D perturbative method and a 2D method that includes a 2D stellar structure model, which takes rotation into account. We then place these differences between 1D and 2D methods in the context of asteroseismic measurements of internal magnetic fields. We only focus on the asymmetries and not on possible additional frequency peaks that can arise when the magnetic and rotation axis are misaligned.\r\n\r\nMethods. We coupled the 1D pulsation codes GYRE and StORM to the 2D stellar structure code ESTER and compared the oscillation predictions with the results from the 2D TOP pulsation code. We focused on zero-age main-sequence models representative of rotating β Cephei pulsators spinning at up to 20 per cent of the critical Keplerian rotation rate. Specifically, we investigated low-radial-order gravity and pressure modes.\r\n\r\nResults. We find a generally good agreement between the oscillation frequencies resulting from the 1D and 2D pulsation codes. We report differences in predicted mode multiplet asymmetries of mostly below 0.06 d−1. Since the magnetic asymmetries are small compared to the differences in the rotational asymmetries resulting from the 1D and 2D predictions, accurate measurements of the magnetic field are in most cases challenging.\r\n\r\nConclusions. Differences in the predicted mode asymmetries of a rotating star between 1D perturbative methods and 2D non-perturbative methods can greatly hinder accurate measurements of internal magnetic fields in main-sequence pulsators with low-order modes. Nevertheless, reasonably accurate measurements could be possible with npg ≥ 2 modes if the internal rotation is roughly below 10 per cent of the Keplerian critical rotation frequency for (aligned) magnetic fields of the order of a few hundred kilogauss. While the differences between the 1D and 2D frequency predictions are mostly too large for internal magnetic field detections, the rotational asymmetries predicted by StORM are in general accurate enough for asteroseismic modelling of the stellar rotation in main-sequence stars with identified low-order modes."}],"ddc":["520"],"has_accepted_license":"1","DOAJ_listed":"1","article_processing_charge":"No","article_number":"A336","day":"19","scopus_import":"1","date_created":"2026-01-04T23:01:35Z","quality_controlled":"1","citation":{"ama":"Mombarg JSG, Vanlaer V, Das SB, et al. Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei pulsators? Implications for measurements of rotation and internal magnetic fields. <i>Astronomy &#38; Astrophysics</i>. 2025;704. doi:<a href=\"https://doi.org/10.1051/0004-6361/202557247\">10.1051/0004-6361/202557247</a>","ieee":"J. S. G. Mombarg <i>et al.</i>, “Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei pulsators? Implications for measurements of rotation and internal magnetic fields,” <i>Astronomy &#38; Astrophysics</i>, vol. 704. EDP Sciences, 2025.","short":"J.S.G. Mombarg, V. Vanlaer, S.B. Das, M. Rieutord, C. Aerts, L.A. Bugnet, S. Mathis, D.R. Reese, J. Ballot, Astronomy &#38; Astrophysics 704 (2025).","chicago":"Mombarg, J. S.G., V. Vanlaer, Srijan B Das, M. Rieutord, C. Aerts, Lisa Annabelle Bugnet, S. Mathis, D. R. Reese, and J. Ballot. “Is a 1D Perturbative Method Sufficient for Asteroseismic Modelling of β Cephei Pulsators? Implications for Measurements of Rotation and Internal Magnetic Fields.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2025. <a href=\"https://doi.org/10.1051/0004-6361/202557247\">https://doi.org/10.1051/0004-6361/202557247</a>.","apa":"Mombarg, J. S. G., Vanlaer, V., Das, S. B., Rieutord, M., Aerts, C., Bugnet, L. A., … Ballot, J. (2025). Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei pulsators? Implications for measurements of rotation and internal magnetic fields. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202557247\">https://doi.org/10.1051/0004-6361/202557247</a>","mla":"Mombarg, J. S. G., et al. “Is a 1D Perturbative Method Sufficient for Asteroseismic Modelling of β Cephei Pulsators? Implications for Measurements of Rotation and Internal Magnetic Fields.” <i>Astronomy &#38; Astrophysics</i>, vol. 704, A336, EDP Sciences, 2025, doi:<a href=\"https://doi.org/10.1051/0004-6361/202557247\">10.1051/0004-6361/202557247</a>.","ista":"Mombarg JSG, Vanlaer V, Das SB, Rieutord M, Aerts C, Bugnet LA, Mathis S, Reese DR, Ballot J. 2025. Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei pulsators? Implications for measurements of rotation and internal magnetic fields. Astronomy &#38; Astrophysics. 704, A336."},"doi":"10.1051/0004-6361/202557247","intvolume":"       704","related_material":{"record":[{"id":"20936","relation":"research_data","status":"public"}]},"arxiv":1,"oa_version":"Published Version","publication_status":"published","type":"journal_article","publisher":"EDP Sciences","PlanS_conform":"1","OA_type":"diamond","article_type":"original","month":"12","project":[{"name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"},{"_id":"914d8549-16d5-11f0-9cad-bbe6324c93a9","grant_number":"101165631","name":"Unveiling the mysteries of stellar dynamics: a pioneering journey in magnetoasteroseismology"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei pulsators? Implications for measurements of rotation and internal magnetic fields","department":[{"_id":"LiBu"}],"date_updated":"2026-02-16T12:14:36Z","publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"OA_place":"publisher","ec_funded":1,"_id":"20931"},{"date_updated":"2026-02-16T12:14:52Z","department":[{"_id":"JoMa"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field","_id":"20932","publication_identifier":{"issn":["0004-6361"],"eissn":["1432-0746"]},"OA_place":"publisher","oa_version":"Published Version","publisher":"EDP Sciences","publication_status":"published","type":"journal_article","arxiv":1,"article_type":"original","month":"12","PlanS_conform":"1","OA_type":"diamond","has_accepted_license":"1","DOAJ_listed":"1","article_processing_charge":"No","article_number":"A328","file_date_updated":"2026-01-05T09:26:17Z","oa":1,"ddc":["520"],"abstract":[{"text":"Identifying Lyman continuum (LyC) leakers at intermediate redshifts is crucial for understanding the properties of cosmic reionizers because the opacity of the intergalactic medium (IGM) prevents the direct detection of LyC emission from sources during the Epoch of Reionization (EoR). In this study, we confirm two new LyC candidate leakers at z ∼ 3 in the Abell 2744 cluster field, with absolute escape fractions (fesc) of 0.83−0.80+0.15 and 0.74−0.70+0.23, respectively. The LyC emission was detected using HST/WFC3/F275W and F336W imaging. These two candidate leakers appear to be faint (MUV = −17.61 ± 0.06 and −18.22 ± 0.10), exhibit blue UV continuum slopes (β = −2.43 ± 0.05 and −1.92 ± 0.09), have low masses (M★ ∼ 107.51 ± 0.03 and 107.17 ± 0.15 M⊙) and Lyα equivalent widths of 90 ± 3 Å and 28 ± 12 Å, respectively. These two LyC candidate leakers were detected in a catalog of 91 spectroscopically confirmed sources using public spectra from the JWST and/or MUSE. We also analyzed properties that were proposed as indirect indicators of LyC emission, such as Lyα, the O32 ratio, and M★. We created a galaxy subsample that was selected according to these properties, stacked the LyC observations of this subsample, and assessed the limits of the escape fractions in the stacks. We aim to enhance our understanding of LyC escape mechanisms and improve our predictions of the LyC fesc during the EoR by analyzing the individual candidates and the stacks in the context of the currently limited sample of known LyC leakers at z ∼ 3.","lang":"eng"}],"doi":"10.1051/0004-6361/202556410","intvolume":"       704","day":"01","scopus_import":"1","date_created":"2026-01-04T23:01:35Z","citation":{"ista":"Liu Y, Mascia S, Pentericci L, Watson P, Alavi A, Bergamini P, Bradač M, Calabrò A, Glazebrook K, Henry A, Llerena M, Merlin E, Metha B, Nanayakkara T, Napolitano L, Roy N, Siana B, Vanzella E, Vulcani B, Wang X. 2025. A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field. Astronomy &#38; Astrophysics. 704, A328.","mla":"Liu, Y., et al. “A Lyman Continuum Analysis of ∼100 Galaxies at z Spec∼ 3 in the Abell 2744 Cluster Field.” <i>Astronomy &#38; Astrophysics</i>, vol. 704, A328, EDP Sciences, 2025, doi:<a href=\"https://doi.org/10.1051/0004-6361/202556410\">10.1051/0004-6361/202556410</a>.","apa":"Liu, Y., Mascia, S., Pentericci, L., Watson, P., Alavi, A., Bergamini, P., … Wang, X. (2025). A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/0004-6361/202556410\">https://doi.org/10.1051/0004-6361/202556410</a>","chicago":"Liu, Y., Sara Mascia, L. Pentericci, P. Watson, A. Alavi, P. Bergamini, M. Bradač, et al. “A Lyman Continuum Analysis of ∼100 Galaxies at z Spec∼ 3 in the Abell 2744 Cluster Field.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2025. <a href=\"https://doi.org/10.1051/0004-6361/202556410\">https://doi.org/10.1051/0004-6361/202556410</a>.","ieee":"Y. Liu <i>et al.</i>, “A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field,” <i>Astronomy &#38; Astrophysics</i>, vol. 704. EDP Sciences, 2025.","short":"Y. Liu, S. Mascia, L. Pentericci, P. Watson, A. Alavi, P. Bergamini, M. Bradač, A. Calabrò, K. Glazebrook, A. Henry, M. Llerena, E. Merlin, B. Metha, T. Nanayakkara, L. Napolitano, N. Roy, B. Siana, E. Vanzella, B. Vulcani, X. Wang, Astronomy &#38; Astrophysics 704 (2025).","ama":"Liu Y, Mascia S, Pentericci L, et al. A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field. <i>Astronomy &#38; Astrophysics</i>. 2025;704. doi:<a href=\"https://doi.org/10.1051/0004-6361/202556410\">10.1051/0004-6361/202556410</a>"},"quality_controlled":"1","year":"2025","publication":"Astronomy & Astrophysics","language":[{"iso":"eng"}],"author":[{"first_name":"Y.","full_name":"Liu, Y.","last_name":"Liu"},{"id":"edaf889c-c7cd-11ef-ab1b-bb28c431bd29","last_name":"Mascia","full_name":"Mascia, Sara","first_name":"Sara"},{"first_name":"L.","full_name":"Pentericci, L.","last_name":"Pentericci"},{"last_name":"Watson","full_name":"Watson, P.","first_name":"P."},{"full_name":"Alavi, A.","last_name":"Alavi","first_name":"A."},{"last_name":"Bergamini","full_name":"Bergamini, P.","first_name":"P."},{"full_name":"Bradač, M.","last_name":"Bradač","first_name":"M."},{"first_name":"A.","full_name":"Calabrò, A.","last_name":"Calabrò"},{"first_name":"K.","last_name":"Glazebrook","full_name":"Glazebrook, K."},{"last_name":"Henry","full_name":"Henry, A.","first_name":"A."},{"first_name":"M.","last_name":"Llerena","full_name":"Llerena, M."},{"last_name":"Merlin","full_name":"Merlin, E.","first_name":"E."},{"first_name":"B.","last_name":"Metha","full_name":"Metha, B."},{"first_name":"T.","full_name":"Nanayakkara, T.","last_name":"Nanayakkara"},{"first_name":"L.","full_name":"Napolitano, L.","last_name":"Napolitano"},{"last_name":"Roy","full_name":"Roy, N.","first_name":"N."},{"full_name":"Siana, B.","last_name":"Siana","first_name":"B."},{"last_name":"Vanzella","full_name":"Vanzella, E.","first_name":"E."},{"first_name":"B.","full_name":"Vulcani, B.","last_name":"Vulcani"},{"first_name":"X.","full_name":"Wang, X.","last_name":"Wang"}],"external_id":{"arxiv":["2507.11045"]},"volume":704,"date_published":"2025-12-01T00:00:00Z","file":[{"success":1,"file_name":"2025_AstronomyAstrophysics_Liu.pdf","file_size":4642530,"checksum":"3e6061f3c4bfb521b3333ea4913c241a","date_created":"2026-01-05T09:26:17Z","access_level":"open_access","content_type":"application/pdf","date_updated":"2026-01-05T09:26:17Z","file_id":"20938","creator":"dernst","relation":"main_file"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","acknowledgement":"We acknowledge support from the National Science Foundation of China – 12225301, INAF Large grant “Spectroscopic survey with JWST” jand from PRIN 2022 MUR project 2022CB3PJ3 – First Light And Galaxy aSsembly (FLAGS) funded by the European Union – Next Generation EU, and Postgraduate Scholarship Program under the grant of China Scholarship Council. P.W. and B.V. acknowledge support from the INAF Mini Grant ‘1.05.24.07.01 RSN1: Spatially Resolved Near-IR Emission of Intermediate-Redshift Jellyfish Galaxies’ (PI Watson). We acknowledge A. Acebron, C. Grillo, and P. Rosati for their fundamental contribution to the strong lensing analysis and results. We also extend our gratitude to the JWST and HST teams for their efforts in designing, building, and operating these transformative missions."},{"_id":"20933","pmid":1,"OA_place":"publisher","publication_identifier":{"eissn":["1521-3773"],"issn":["1433-7851"]},"date_updated":"2026-01-05T09:42:56Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Sensitized disequilibration of water-soluble azopolymers","department":[{"_id":"RaKl"}],"project":[{"name":"Integrating Molecular Photoswitches with PH-Feedback Mechanisms: Towards Life-like Materials","grant_number":"713490","_id":"7bf494dc-9f16-11ee-852c-9fe37e3f50f0"}],"month":"12","article_type":"original","PlanS_conform":"1","OA_type":"hybrid","main_file_link":[{"url":"https://doi.org/10.1002/anie.202523447","open_access":"1"}],"publication_status":"epub_ahead","publisher":"Wiley","type":"journal_article","oa_version":"Published Version","doi":"10.1002/anie.202523447","scopus_import":"1","date_created":"2026-01-04T23:01:35Z","citation":{"ista":"Meteling HJ, Gemen J, Häkkinen S, Klajn R, Priimagi A. 2025. Sensitized disequilibration of water-soluble azopolymers. Angewandte Chemie International Edition., e23447.","mla":"Meteling, Henning Jörn, et al. “Sensitized Disequilibration of Water-Soluble Azopolymers.” <i>Angewandte Chemie International Edition</i>, e23447, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/anie.202523447\">10.1002/anie.202523447</a>.","chicago":"Meteling, Henning Jörn, Julius Gemen, Satu Häkkinen, Rafal Klajn, and Arri Priimagi. “Sensitized Disequilibration of Water-Soluble Azopolymers.” <i>Angewandte Chemie International Edition</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/anie.202523447\">https://doi.org/10.1002/anie.202523447</a>.","apa":"Meteling, H. J., Gemen, J., Häkkinen, S., Klajn, R., &#38; Priimagi, A. (2025). Sensitized disequilibration of water-soluble azopolymers. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.202523447\">https://doi.org/10.1002/anie.202523447</a>","short":"H.J. Meteling, J. Gemen, S. Häkkinen, R. Klajn, A. Priimagi, Angewandte Chemie International Edition (2025).","ieee":"H. J. Meteling, J. Gemen, S. Häkkinen, R. Klajn, and A. Priimagi, “Sensitized disequilibration of water-soluble azopolymers,” <i>Angewandte Chemie International Edition</i>. Wiley, 2025.","ama":"Meteling HJ, Gemen J, Häkkinen S, Klajn R, Priimagi A. Sensitized disequilibration of water-soluble azopolymers. <i>Angewandte Chemie International Edition</i>. 2025. doi:<a href=\"https://doi.org/10.1002/anie.202523447\">10.1002/anie.202523447</a>"},"quality_controlled":"1","day":"23","article_processing_charge":"Yes (via OA deal)","article_number":"e23447","has_accepted_license":"1","abstract":[{"lang":"eng","text":"Photo-responsive systems based on azobenzenes usually require UV light for E→Z isomerization, limiting their applicability, especially in biomedical contexts. Disequilibration by sensitization of azobenzene under confinement (DESC) has recently emerged as a supramolecular strategy to bypass this limitation without the need to derivatize the azobenzene scaffold. Here, we expand DESC to water-soluble azopolymers obtained by RAFT polymerization and systematically investigate the interplay between the polymer structure and DESC efficiency. Using this approach, we achieved as much as 85% of the direct photoexcitation (UV) switching efficiency, while utilizing low-energy (yellow) light. These results establish general design principles for combining DESC with polymeric systems, opening new opportunities for the development of functional materials driven with low-energy light."}],"ddc":["540"],"oa":1,"date_published":"2025-12-23T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"pmid":["41437660"]},"author":[{"full_name":"Meteling, Henning Jörn","last_name":"Meteling","first_name":"Henning Jörn"},{"last_name":"Gemen","full_name":"Gemen, Julius","first_name":"Julius"},{"full_name":"Häkkinen, Satu","last_name":"Häkkinen","first_name":"Satu"},{"first_name":"Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal"},{"last_name":"Priimagi","full_name":"Priimagi, Arri","first_name":"Arri"}],"status":"public","acknowledgement":"This work is supported by the European Research Council (Consolidator Grand project MULTIMODAL, no. 101045223), the Research Council of Finland Center of Excellence “Life-Inspired Hybrid Materials Research” (LIBER, no. 346107) and the Research Council of Finland Flagship Programme on Photonics Research and Innovation (PREIN, no. 320165). H.M. gratefully acknowledges Oommen Podivan for providing access to their Zetasizer for DLS measurements and the Faculty of Medicine and Health Technologies at Tampere University for access to their laboratory facilities. R.K. acknowledges funding through the Award for Research Cooperation and High Excellence in Science (ARCHES) from the Federal German Ministry for Education and Research. S.H. acknowledges financial support through the profi7 profiling action SUSBIO from the Research Council of Finland (no. 352754).\r\nOpen access publishing facilitated by Tampereen yliopisto ja Tampereen ammattikorkeakoulu, as part of the Wiley - FinELib agreement.","year":"2025","publication":"Angewandte Chemie International Edition","language":[{"iso":"eng"}]},{"language":[{"iso":"eng"}],"publication":"Transactions on Machine Learning Research","year":"2025","status":"public","author":[{"full_name":"Montagna, Francesco","id":"353afc8e-19f4-11f0-9db9-811f1723c83f","last_name":"Montagna","first_name":"Francesco"},{"full_name":"Cairney-Leeming, Maximilian T","id":"2214a80c-31f8-11ee-a48d-cf52cc58759b","last_name":"Cairney-Leeming","first_name":"Maximilian T"},{"first_name":"Dhanya","full_name":"Sridhar, Dhanya","last_name":"Sridhar"},{"first_name":"Francesco","orcid":"0000-0002-4850-0683","full_name":"Locatello, Francesco","id":"26cfd52f-2483-11ee-8040-88983bcc06d4","last_name":"Locatello"}],"external_id":{"arxiv":["2405.16924"]},"file":[{"date_updated":"2026-01-05T09:51:28Z","file_id":"20939","creator":"dernst","relation":"main_file","file_name":"2025_PMLR_Montagna.pdf","success":1,"file_size":1030280,"checksum":"968c471bb1f682cf823b2d4cadea8a3f","date_created":"2026-01-05T09:51:28Z","access_level":"open_access","content_type":"application/pdf"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-12-18T00:00:00Z","oa":1,"file_date_updated":"2026-01-05T09:51:28Z","ddc":["000"],"abstract":[{"text":" Supervised learning for causal discovery from observational data often achieves competitive performance despite seemingly avoiding the explicit assumptions that traditional methods require for identifiability. In this work, we analyze CSIvA (Ke et al., 2023) on bivariate causal models, a transformer architecture for amortized inference promising to train on synthetic data and transfer to real ones. First, we bridge the gap with identifiability theory, showing that the training distribution implicitly defines a prior on the causal model of the test observations: consistent with classical approaches, good performance is achieved when we have a good prior on the test data, and the underlying model is identifiable. Second, we find that CSIvA can not generalize to classes of causal models unseen during training: to overcome this limitation, we theoretically and empirically analyze \\textit{when} training CSIvA on datasets generated by multiple identifiable causal models with different structural assumptions improves its generalization at test time. Overall, we find that amortized causal discovery still adheres to identifiability theory, violating the previous hypothesis from Lopez-Paz et al. (2015) that supervised learning methods could overcome its restrictions.","lang":"eng"}],"has_accepted_license":"1","article_processing_charge":"No","day":"18","corr_author":"1","alternative_title":["TMLR"],"quality_controlled":"1","citation":{"ista":"Montagna F, Cairney-Leeming MT, Sridhar D, Locatello F. 2025. Demystifying amortized causal discovery with transformers. Transactions on Machine Learning Research.","apa":"Montagna, F., Cairney-Leeming, M. T., Sridhar, D., &#38; Locatello, F. (2025). Demystifying amortized causal discovery with transformers. <i>Transactions on Machine Learning Research</i>. ML Research Press.","chicago":"Montagna, Francesco, Maximilian T Cairney-Leeming, Dhanya Sridhar, and Francesco Locatello. “Demystifying Amortized Causal Discovery with Transformers.” <i>Transactions on Machine Learning Research</i>. ML Research Press, 2025.","mla":"Montagna, Francesco, et al. “Demystifying Amortized Causal Discovery with Transformers.” <i>Transactions on Machine Learning Research</i>, ML Research Press, 2025.","ama":"Montagna F, Cairney-Leeming MT, Sridhar D, Locatello F. Demystifying amortized causal discovery with transformers. <i>Transactions on Machine Learning Research</i>. 2025.","short":"F. Montagna, M.T. Cairney-Leeming, D. Sridhar, F. Locatello, Transactions on Machine Learning Research (2025).","ieee":"F. Montagna, M. T. Cairney-Leeming, D. Sridhar, and F. Locatello, “Demystifying amortized causal discovery with transformers,” <i>Transactions on Machine Learning Research</i>. ML Research Press, 2025."},"date_created":"2026-01-04T23:01:35Z","scopus_import":"1","related_material":{"link":[{"url":"https://github.com/francescomontagna/learning-to-induce.git","relation":"software"}]},"arxiv":1,"oa_version":"Published Version","type":"journal_article","publisher":"ML Research Press","publication_status":"published","OA_type":"gold","PlanS_conform":"1","article_type":"original","month":"12","title":"Demystifying amortized causal discovery with transformers","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"FrLo"}],"date_updated":"2026-01-05T09:54:59Z","publication_identifier":{"eissn":["2835-8856"]},"OA_place":"publisher","_id":"20934"},{"year":"2025","publication":"Molecular Cell","language":[{"iso":"eng"}],"author":[{"first_name":"Ron","last_name":"Kelley","full_name":"Kelley, Ron"},{"first_name":"Sagar","full_name":"Khavnekar, Sagar","last_name":"Khavnekar"},{"first_name":"Ricardo D.","full_name":"Righetto, Ricardo D.","last_name":"Righetto"},{"last_name":"Heebner","full_name":"Heebner, Jessica","first_name":"Jessica"},{"first_name":"Martin","last_name":"Obr","id":"4741CA5A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1756-6564","full_name":"Obr, Martin"},{"last_name":"Zhang","full_name":"Zhang, Xianjun","first_name":"Xianjun"},{"full_name":"Chakraborty, Saikat","last_name":"Chakraborty","first_name":"Saikat"},{"first_name":"Grigory","full_name":"Tagiltsev, Grigory","last_name":"Tagiltsev"},{"first_name":"Alicia","orcid":"0000-0002-6080-839X","full_name":"Michael, Alicia","last_name":"Michael","id":"6437c950-2a03-11ee-914d-d6476dd7b75c"},{"first_name":"Sofie","last_name":"Van Dorst","full_name":"Van Dorst, Sofie"},{"last_name":"Waltz","full_name":"Waltz, Florent","first_name":"Florent"},{"full_name":"Mccafferty, Caitlyn L.","last_name":"Mccafferty","first_name":"Caitlyn L."},{"first_name":"Lorenz","full_name":"Lamm, Lorenz","last_name":"Lamm"},{"first_name":"Simon","full_name":"Zufferey, Simon","last_name":"Zufferey"},{"last_name":"Van Der Stappen","full_name":"Van Der Stappen, Philippe","first_name":"Philippe"},{"last_name":"Van Den Hoek","full_name":"Van Den Hoek, Hugo","first_name":"Hugo"},{"full_name":"Wietrzynski, Wojciech","last_name":"Wietrzynski","first_name":"Wojciech"},{"last_name":"Harar","id":"e03d953a-6e8c-11ef-99e4-f0717d385cd5","full_name":"Harar, Pavol","orcid":"0000-0001-5206-1794","first_name":"Pavol"},{"first_name":"William","last_name":"Wan","full_name":"Wan, William"},{"first_name":"John A.G.","full_name":"Briggs, John A.G.","last_name":"Briggs"},{"first_name":"Jürgen M.","full_name":"Plitzko, Jürgen M.","last_name":"Plitzko"},{"first_name":"Benjamin D.","last_name":"Engel","full_name":"Engel, Benjamin D."},{"first_name":"Abhay","full_name":"Kotecha, Abhay","last_name":"Kotecha"}],"date_published":"2025-12-19T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","acknowledgement":"Calculations were performed at the Max Planck Institute of Biochemistry and the Raven Supercomputer of the Max Planck Computing and Data Facility (MPCDF) in Garching, Germany; at the sciCORE (http://scicore.unibas.ch/) scientific computing center at the University of Basel, Switzerland; and at Thermo Fisher Scientific, in Eindhoven, the Netherlands. This work was supported by Thermo Fisher Scientific. All lamella preparations and tilt-series collections used in this work were conducted at Thermo Fisher R&D facilities in Brno and Eindhoven, utilizing Arctis and Krios microscopes. This work was also supported by the ERC consolidator grant “cryOcean” (fulfilled by the Swiss State Secretariat for Education, Research and Innovation, M822.00045) as well as a Swiss Nanoscience Institute PhD school grant to B.D.E. and P.V.d.S., an EMBO long-term postdoctoral fellowship (ALTF-383-2022) to G.T., an SNSF Postdoctoral Fellowship (project 210561) to F.W., a Boehringer Ingelheim Fonds fellowship to L.L., and by the Max Planck Society to J.A.G.B. and J.M.P.","article_processing_charge":"Yes (in subscription journal)","oa":1,"abstract":[{"lang":"eng","text":"In situ cryo-electron tomography (cryo-ET) has emerged as the method of choice to investigate the structures of biomolecules in their native context. However, challenges remain for the efficient production and sharing of large-scale cryo-ET datasets. Here, we combined cryogenic plasma-based focused ion beam (cryo-PFIB) milling with recent advances in cryo-ET acquisition and processing to generate a dataset of 1,829 annotated tomograms of the green alga Chlamydomonas reinhardtii, which we provide as a community resource to drive method development and inspire biological discovery. To assay data quality, we performed subtomogram averaging of both soluble and membrane-bound complexes ranging in size from >3 MDa to ∼200 kDa, including 80S ribosomes, Rubisco, nucleosomes, microtubules, clathrin, photosystem II, and mitochondrial ATP synthase. The majority of these density maps reached sub-nanometer resolution, demonstrating the potential of this C. reinhardtii dataset as well as the promise of modern cryo-ET workflows and open data sharing to empower visual proteomics."}],"ddc":["570"],"doi":"10.1016/j.molcel.2025.11.029","day":"19","scopus_import":"1","citation":{"apa":"Kelley, R., Khavnekar, S., Righetto, R. D., Heebner, J., Obr, M., Zhang, X., … Kotecha, A. (n.d.). Toward community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii. <i>Molecular Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.molcel.2025.11.029\">https://doi.org/10.1016/j.molcel.2025.11.029</a>","mla":"Kelley, Ron, et al. “Toward Community-Driven Visual Proteomics with Large-Scale Cryo-Electron Tomography of Chlamydomonas Reinhardtii.” <i>Molecular Cell</i>, Elsevier, doi:<a href=\"https://doi.org/10.1016/j.molcel.2025.11.029\">10.1016/j.molcel.2025.11.029</a>.","chicago":"Kelley, Ron, Sagar Khavnekar, Ricardo D. Righetto, Jessica Heebner, Martin Obr, Xianjun Zhang, Saikat Chakraborty, et al. “Toward Community-Driven Visual Proteomics with Large-Scale Cryo-Electron Tomography of Chlamydomonas Reinhardtii.” <i>Molecular Cell</i>. Elsevier, n.d. <a href=\"https://doi.org/10.1016/j.molcel.2025.11.029\">https://doi.org/10.1016/j.molcel.2025.11.029</a>.","ista":"Kelley R, Khavnekar S, Righetto RD, Heebner J, Obr M, Zhang X, Chakraborty S, Tagiltsev G, Michael AK, Van Dorst S, Waltz F, Mccafferty CL, Lamm L, Zufferey S, Van Der Stappen P, Van Den Hoek H, Wietrzynski W, Harar P, Wan W, Briggs JAG, Plitzko JM, Engel BD, Kotecha A. Toward community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii. Molecular Cell.","ama":"Kelley R, Khavnekar S, Righetto RD, et al. Toward community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii. <i>Molecular Cell</i>. doi:<a href=\"https://doi.org/10.1016/j.molcel.2025.11.029\">10.1016/j.molcel.2025.11.029</a>","ieee":"R. Kelley <i>et al.</i>, “Toward community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii,” <i>Molecular Cell</i>. Elsevier.","short":"R. Kelley, S. Khavnekar, R.D. Righetto, J. Heebner, M. Obr, X. Zhang, S. Chakraborty, G. Tagiltsev, A.K. Michael, S. Van Dorst, F. Waltz, C.L. Mccafferty, L. Lamm, S. Zufferey, P. Van Der Stappen, H. Van Den Hoek, W. Wietrzynski, P. Harar, W. Wan, J.A.G. Briggs, J.M. Plitzko, B.D. Engel, A. Kotecha, Molecular Cell (n.d.)."},"quality_controlled":"1","date_created":"2026-01-04T23:01:36Z","oa_version":"Published Version","publisher":"Elsevier","type":"journal_article","publication_status":"inpress","article_type":"original","month":"12","PlanS_conform":"1","OA_type":"hybrid","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.molcel.2025.11.029"}],"date_updated":"2026-01-05T08:32:47Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Toward community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii","department":[{"_id":"AlMi"}],"_id":"20935","publication_identifier":{"issn":["1097-2765"],"eissn":["1097-4164"]},"OA_place":"publisher"},{"year":"2025","oa_version":"Submitted Version","type":"research_data_reference","publisher":"Zenodo","author":[{"first_name":"Joey","full_name":"Mombarg, Joey","last_name":"Mombarg"},{"first_name":"Vincent","full_name":"Vanlaer, Vincent","last_name":"Vanlaer"},{"orcid":"0000-0003-0896-7972","full_name":"Das, Srijan B","id":"9ce7c423-dacf-11ed-8942-e09c6cb27149","last_name":"Das","first_name":"Srijan B"},{"full_name":"Rieutord, Michel","last_name":"Rieutord","first_name":"Michel"},{"full_name":"Aerts, Conny","last_name":"Aerts","first_name":"Conny"},{"id":"d9edb345-f866-11ec-9b37-d119b5234501","last_name":"Bugnet","orcid":"0000-0003-0142-4000","full_name":"Bugnet, Lisa Annabelle","first_name":"Lisa Annabelle"},{"last_name":"Mathis","full_name":"Mathis, Stephane","first_name":"Stephane"},{"full_name":"Reese, Daniel","last_name":"Reese","first_name":"Daniel"},{"full_name":"Ballot, Jerome","last_name":"Ballot","first_name":"Jerome"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-11-11T00:00:00Z","month":"11","OA_type":"gold","main_file_link":[{"url":"https://doi.org/10.5281/zenodo.17580178","open_access":"1"}],"status":"public","date_updated":"2026-02-16T12:14:36Z","article_processing_charge":"No","oa":1,"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"department":[{"_id":"LiBu"}],"ddc":["520"],"abstract":[{"text":"Supplementary material for Mombarg et al. (2025, A&A). Title: \"Is a 1D perturbative method sufficient for asteroseismic modelling of \r\n~Cephei pulsators? Implications for measurements of rotation and internal magnetic fields\"\r\n\r\nContent:\r\n- Non-rotating ESTER models and associated .GSM models. (Xini = 0.71, Zini = 0.014, vertical/horizonal viscosity 10^7 cm^2/s, vertical chemical diffusion 10^4 cm^2/s for evolution model. More details on the ESTER models can be found in the ESTER manual.\r\n\r\n- Rotational asymmetries computed with StORM and TOP in 1/d, and the central m=0 frequency from TOP in 1/d. (all_A*_new.pkl)\r\n\r\n- Magnetic asymmetries in 1/d for different obliquity angles between 0 and 90 deg for ZAMS and MAMS model, for B_0 = 75 kG. *_nu key gives unperturbed mode frequencies, *_npg the radial order (asym_dict.pkl, asym_dict_evol.pkl)","lang":"eng"}],"title":"Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei pulsators?","doi":"10.5281/ZENODO.17580178","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"20931"}]},"_id":"20936","day":"11","date_created":"2026-01-05T08:39:33Z","citation":{"short":"J. Mombarg, V. Vanlaer, S.B. Das, M. Rieutord, C. Aerts, L.A. Bugnet, S. Mathis, D. Reese, J. Ballot, (2025).","ieee":"J. Mombarg <i>et al.</i>, “Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei pulsators?” Zenodo, 2025.","ama":"Mombarg J, Vanlaer V, Das SB, et al. Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei pulsators? 2025. doi:<a href=\"https://doi.org/10.5281/ZENODO.17580178\">10.5281/ZENODO.17580178</a>","ista":"Mombarg J, Vanlaer V, Das SB, Rieutord M, Aerts C, Bugnet LA, Mathis S, Reese D, Ballot J. 2025. Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei pulsators?, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.17580178\">10.5281/ZENODO.17580178</a>.","chicago":"Mombarg, Joey, Vincent Vanlaer, Srijan B Das, Michel Rieutord, Conny Aerts, Lisa Annabelle Bugnet, Stephane Mathis, Daniel Reese, and Jerome Ballot. “Is a 1D Perturbative Method Sufficient for Asteroseismic Modelling of β Cephei Pulsators?” Zenodo, 2025. <a href=\"https://doi.org/10.5281/ZENODO.17580178\">https://doi.org/10.5281/ZENODO.17580178</a>.","apa":"Mombarg, J., Vanlaer, V., Das, S. B., Rieutord, M., Aerts, C., Bugnet, L. A., … Ballot, J. (2025). Is a 1D perturbative method sufficient for asteroseismic modelling of β Cephei pulsators? Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.17580178\">https://doi.org/10.5281/ZENODO.17580178</a>","mla":"Mombarg, Joey, et al. <i>Is a 1D Perturbative Method Sufficient for Asteroseismic Modelling of β Cephei Pulsators?</i> Zenodo, 2025, doi:<a href=\"https://doi.org/10.5281/ZENODO.17580178\">10.5281/ZENODO.17580178</a>."},"OA_place":"repository"},{"_id":"20940","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"20927"}]},"doi":"10.5281/ZENODO.15321721","OA_place":"repository","date_created":"2026-01-05T10:00:06Z","citation":{"chicago":"Mandal, Supriya, Krishnendu Maji, Lucky Kapoor, Souvik Sasmal, Soham Manni, John Jesudasan, Pratap Raychaudhuri, Arumugam Thamizhavel, and Mandar M. Deshmukh. “Mode Dispersion with Magnetic Field in a Cavity-Magnonics System.” Zenodo, 2025. <a href=\"https://doi.org/10.5281/ZENODO.15321721\">https://doi.org/10.5281/ZENODO.15321721</a>.","mla":"Mandal, Supriya, et al. <i>Mode Dispersion with Magnetic Field in a Cavity-Magnonics System</i>. Zenodo, 2025, doi:<a href=\"https://doi.org/10.5281/ZENODO.15321721\">10.5281/ZENODO.15321721</a>.","apa":"Mandal, S., Maji, K., Kapoor, L., Sasmal, S., Manni, S., Jesudasan, J., … Deshmukh, M. M. (2025). Mode dispersion with magnetic field in a cavity-magnonics system. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.15321721\">https://doi.org/10.5281/ZENODO.15321721</a>","ista":"Mandal S, Maji K, Kapoor L, Sasmal S, Manni S, Jesudasan J, Raychaudhuri P, Thamizhavel A, Deshmukh MM. 2025. Mode dispersion with magnetic field in a cavity-magnonics system, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.15321721\">10.5281/ZENODO.15321721</a>.","short":"S. Mandal, K. Maji, L. Kapoor, S. Sasmal, S. Manni, J. Jesudasan, P. Raychaudhuri, A. Thamizhavel, M.M. Deshmukh, (2025).","ieee":"S. Mandal <i>et al.</i>, “Mode dispersion with magnetic field in a cavity-magnonics system.” Zenodo, 2025.","ama":"Mandal S, Maji K, Kapoor L, et al. Mode dispersion with magnetic field in a cavity-magnonics system. 2025. doi:<a href=\"https://doi.org/10.5281/ZENODO.15321721\">10.5281/ZENODO.15321721</a>"},"day":"02","date_updated":"2026-01-05T10:07:04Z","article_processing_charge":"No","has_accepted_license":"1","department":[{"_id":"MaIb"},{"_id":"JoFi"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"abstract":[{"text":"These are the raw data files that supplement our study of mode dispersion with magnetic field of a cavity-magnonics system containing chromium trichloride on coplanar waveguide resonator.","lang":"eng"}],"title":"Mode dispersion with magnetic field in a cavity-magnonics system","oa":1,"date_published":"2025-05-02T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"05","author":[{"full_name":"Mandal, Supriya","last_name":"Mandal","first_name":"Supriya"},{"last_name":"Maji","id":"76bc9e9f-ba0b-11ee-8184-90edabd17a58","full_name":"Maji, Krishnendu","first_name":"Krishnendu"},{"first_name":"Lucky","id":"84b9700b-15b2-11ec-abd3-831089e67615","last_name":"Kapoor","orcid":"0000-0001-8319-2148","full_name":"Kapoor, Lucky"},{"first_name":"Souvik","full_name":"Sasmal, Souvik","last_name":"Sasmal"},{"full_name":"Manni, Soham","last_name":"Manni","first_name":"Soham"},{"full_name":"Jesudasan, John","last_name":"Jesudasan","first_name":"John"},{"last_name":"Raychaudhuri","full_name":"Raychaudhuri, Pratap","first_name":"Pratap"},{"first_name":"Arumugam","full_name":"Thamizhavel, Arumugam","last_name":"Thamizhavel"},{"first_name":"Mandar M.","full_name":"Deshmukh, Mandar M.","last_name":"Deshmukh"}],"OA_type":"green","status":"public","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/ZENODO.15321721"}],"publisher":"Zenodo","type":"research_data_reference","year":"2025","oa_version":"Submitted Version"},{"language":[{"iso":"eng"}],"publication":"Angewandte Chemie International Edition","issue":"31","year":"2025","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2025-07-28T00:00:00Z","author":[{"first_name":"Manuel","last_name":"Loos","full_name":"Loos, Manuel"},{"last_name":"Xu","full_name":"Xu, Felix","first_name":"Felix"},{"orcid":"0000-0001-5996-956X","full_name":"Mandal, Pradeep K","last_name":"Mandal","id":"6a3def15-d4b4-11ef-9fa9-a24c1f545ec3","first_name":"Pradeep K"},{"last_name":"Chakrabortty","full_name":"Chakrabortty, Tulika","first_name":"Tulika"},{"first_name":"Céline","last_name":"Douat","full_name":"Douat, Céline"},{"last_name":"Konrad","full_name":"Konrad, David B.","first_name":"David B."},{"full_name":"Cabbar, Melis","last_name":"Cabbar","first_name":"Melis"},{"first_name":"Johannes","last_name":"Singer","full_name":"Singer, Johannes"},{"full_name":"Corvaglia, Valentina","last_name":"Corvaglia","first_name":"Valentina"},{"first_name":"Thomas","full_name":"Carell, Thomas","last_name":"Carell"},{"first_name":"Ivan","full_name":"Huc, Ivan","last_name":"Huc"}],"external_id":{"pmid":["40346004"]},"extern":"1","volume":64,"ddc":["540"],"abstract":[{"lang":"eng","text":"A linker unit was designed and synthesized that can serve both as a hairpin turn in a DNA duplex and anchor point for an aromatic helical foldamer mimicking the shape and surface properties of B‐DNA. Methods were developed to synthesize natural/non‐natural chimeric molecules combining foldamer and DNA segments. The ability of the linker to position the foldamer helix and the duplex DNA so that their rims and grooves are in register, despite their completely different chemical nature, was demonstrated using single crystal X‐ray diffraction, circular dichroism and molecular models. Bio‐layer interferometry confirmed that artificial hairpin DNA duplexes keep their ability to bind to DNA binding proteins. The chimeric molecules may pave the way to competitive inhibitors of protein‐DNA interactions involving sequence‐selective DNA‐binding proteins."}],"oa":1,"article_processing_charge":"Yes (in subscription journal)","article_number":"e202505273","has_accepted_license":"1","scopus_import":"1","citation":{"ama":"Loos M, Xu F, Mandal PK, et al. Interfacing B‐DNA and DNA mimic foldamers. <i>Angewandte Chemie International Edition</i>. 2025;64(31). doi:<a href=\"https://doi.org/10.1002/anie.202505273\">10.1002/anie.202505273</a>","ieee":"M. Loos <i>et al.</i>, “Interfacing B‐DNA and DNA mimic foldamers,” <i>Angewandte Chemie International Edition</i>, vol. 64, no. 31. Wiley, 2025.","short":"M. Loos, F. Xu, P.K. Mandal, T. Chakrabortty, C. Douat, D.B. Konrad, M. Cabbar, J. Singer, V. Corvaglia, T. Carell, I. Huc, Angewandte Chemie International Edition 64 (2025).","ista":"Loos M, Xu F, Mandal PK, Chakrabortty T, Douat C, Konrad DB, Cabbar M, Singer J, Corvaglia V, Carell T, Huc I. 2025. Interfacing B‐DNA and DNA mimic foldamers. Angewandte Chemie International Edition. 64(31), e202505273.","apa":"Loos, M., Xu, F., Mandal, P. K., Chakrabortty, T., Douat, C., Konrad, D. B., … Huc, I. (2025). Interfacing B‐DNA and DNA mimic foldamers. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.202505273\">https://doi.org/10.1002/anie.202505273</a>","mla":"Loos, Manuel, et al. “Interfacing B‐DNA and DNA Mimic Foldamers.” <i>Angewandte Chemie International Edition</i>, vol. 64, no. 31, e202505273, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/anie.202505273\">10.1002/anie.202505273</a>.","chicago":"Loos, Manuel, Felix Xu, Pradeep K Mandal, Tulika Chakrabortty, Céline Douat, David B. Konrad, Melis Cabbar, et al. “Interfacing B‐DNA and DNA Mimic Foldamers.” <i>Angewandte Chemie International Edition</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/anie.202505273\">https://doi.org/10.1002/anie.202505273</a>."},"date_created":"2026-01-08T07:04:48Z","quality_controlled":"1","day":"28","intvolume":"        64","doi":"10.1002/anie.202505273","type":"journal_article","publisher":"Wiley","publication_status":"published","oa_version":"Published Version","PlanS_conform":"1","main_file_link":[{"url":"https://doi.org/10.1002/anie.202505273","open_access":"1"}],"OA_type":"hybrid","month":"07","article_type":"original","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"title":"Interfacing B‐DNA and DNA mimic foldamers","date_updated":"2026-01-19T11:07:53Z","OA_place":"publisher","publication_identifier":{"eissn":["1521-3773"],"issn":["1433-7851"]},"_id":"20960","pmid":1}]