[{"citation":{"mla":"Dunaeva, Olga, et al. “The Classification of Endoscopy Images with Persistent Homology.” <i>Proceedings - 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing</i>, IEEE, 2015, p. 7034731, doi:<a href=\"https://doi.org/10.1109/SYNASC.2014.81\">10.1109/SYNASC.2014.81</a>.","ieee":"O. Dunaeva, H. Edelsbrunner, A. Lukyanov, M. Machin, and D. Malkova, “The classification of endoscopy images with persistent homology,” in <i>Proceedings - 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing</i>, Timisoara, Romania, 2015, p. 7034731.","short":"O. Dunaeva, H. Edelsbrunner, A. Lukyanov, M. Machin, D. Malkova, in:, Proceedings - 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing, IEEE, 2015, p. 7034731.","ista":"Dunaeva O, Edelsbrunner H, Lukyanov A, Machin M, Malkova D. 2015. The classification of endoscopy images with persistent homology. Proceedings - 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing. SYNASC: Symbolic and Numeric Algorithms for Scientific Computing, 7034731.","ama":"Dunaeva O, Edelsbrunner H, Lukyanov A, Machin M, Malkova D. The classification of endoscopy images with persistent homology. In: <i>Proceedings - 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing</i>. IEEE; 2015:7034731. doi:<a href=\"https://doi.org/10.1109/SYNASC.2014.81\">10.1109/SYNASC.2014.81</a>","chicago":"Dunaeva, Olga, Herbert Edelsbrunner, Anton Lukyanov, Michael Machin, and Daria Malkova. “The Classification of Endoscopy Images with Persistent Homology.” In <i>Proceedings - 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing</i>, 7034731. IEEE, 2015. <a href=\"https://doi.org/10.1109/SYNASC.2014.81\">https://doi.org/10.1109/SYNASC.2014.81</a>.","apa":"Dunaeva, O., Edelsbrunner, H., Lukyanov, A., Machin, M., &#38; Malkova, D. (2015). The classification of endoscopy images with persistent homology. In <i>Proceedings - 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing</i> (p. 7034731). Timisoara, Romania: IEEE. <a href=\"https://doi.org/10.1109/SYNASC.2014.81\">https://doi.org/10.1109/SYNASC.2014.81</a>"},"date_updated":"2025-09-23T13:44:17Z","isi":1,"title":"The classification of endoscopy images with persistent homology","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","acknowledgement":"This research is supported by the project No. 477 of P.G. Demidov Yaroslavl State University within State Assignment for Research.","day":"05","scopus_import":"1","_id":"1568","department":[{"_id":"HeEd"}],"date_created":"2018-12-11T11:52:46Z","external_id":{"isi":["000366596600074"]},"related_material":{"record":[{"status":"public","id":"1289","relation":"later_version"}]},"publication_status":"published","author":[{"last_name":"Dunaeva","first_name":"Olga","full_name":"Dunaeva, Olga"},{"last_name":"Edelsbrunner","first_name":"Herbert","orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","full_name":"Edelsbrunner, Herbert"},{"full_name":"Lukyanov, Anton","first_name":"Anton","last_name":"Lukyanov"},{"full_name":"Machin, Michael","first_name":"Michael","last_name":"Machin"},{"full_name":"Malkova, Daria","last_name":"Malkova","first_name":"Daria"}],"page":"7034731","type":"conference","month":"02","status":"public","abstract":[{"text":"Aiming at the automatic diagnosis of tumors from narrow band imaging (NBI) magnifying endoscopy (ME) images of the stomach, we combine methods from image processing, computational topology, and machine learning to classify patterns into normal, tubular, vessel. Training the algorithm on a small number of images of each type, we achieve a high rate of correct classifications. The analysis of the learning algorithm reveals that a handful of geometric and topological features are responsible for the overwhelming majority of decisions.","lang":"eng"}],"publisher":"IEEE","language":[{"iso":"eng"}],"article_processing_charge":"No","publication":"Proceedings - 16th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing","date_published":"2015-02-05T00:00:00Z","year":"2015","publist_id":"5603","oa_version":"None","quality_controlled":"1","conference":{"end_date":"2014-09-25","start_date":"2014-09-22","location":"Timisoara, Romania","name":"SYNASC: Symbolic and Numeric Algorithms for Scientific Computing"},"doi":"10.1109/SYNASC.2014.81"},{"status":"public","page":"E806 - E815","type":"journal_article","month":"02","publication_status":"published","author":[{"last_name":"Doyle","first_name":"Siamsa","full_name":"Doyle, Siamsa"},{"last_name":"Haegera","first_name":"Ash","full_name":"Haegera, Ash"},{"first_name":"Thomas","last_name":"Vain","full_name":"Vain, Thomas"},{"full_name":"Rigala, Adeline","last_name":"Rigala","first_name":"Adeline"},{"first_name":"Corrado","last_name":"Viotti","full_name":"Viotti, Corrado"},{"last_name":"Łangowskaa","first_name":"Małgorzata","full_name":"Łangowskaa, Małgorzata"},{"full_name":"Maa, Qian","last_name":"Maa","first_name":"Qian"},{"full_name":"Friml, Jirí","orcid":"0000-0002-8302-7596","first_name":"Jirí","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Raikhel","first_name":"Natasha","full_name":"Raikhel, Natasha"},{"full_name":"Hickse, Glenn","last_name":"Hickse","first_name":"Glenn"},{"full_name":"Robert, Stéphanie","first_name":"Stéphanie","last_name":"Robert"}],"department":[{"_id":"JiFr"}],"external_id":{"isi":["000349446000025"]},"date_created":"2018-12-11T11:52:46Z","scopus_import":"1","_id":"1569","issue":"7","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This work was supported by Vetenskapsrådet and Vinnova (Verket för Innovationssystemet) (S.M.D., T.V., M.Ł., and S.R.), Knut och Alice Wallenbergs Stiftelse (S.M.D., A.R., and C.V.), Kempestiftelserna (A.H. and Q.M.), Carl Tryggers Stiftelse för Vetenskaplig Forskning (Q.M.), European Research Council Grant ERC-2011-StG-20101109-PSDP (to J.F.), US Department of Energy Grant DE-FG02-02ER15295 (to N.V.R.), and National Science Foundation Grant MCB-0817916 (to N.V.R. and G.R.H.). ","day":"17","isi":1,"title":"An early secretory pathway mediated by gnom-like 1 and gnom is essential for basal polarity establishment in Arabidopsis thaliana","oa":1,"citation":{"mla":"Doyle, Siamsa, et al. “An Early Secretory Pathway Mediated by Gnom-like 1 and Gnom Is Essential for Basal Polarity Establishment in Arabidopsis Thaliana.” <i>PNAS</i>, vol. 112, no. 7, National Academy of Sciences, 2015, pp. E806–15, doi:<a href=\"https://doi.org/10.1073/pnas.1424856112\">10.1073/pnas.1424856112</a>.","ieee":"S. Doyle <i>et al.</i>, “An early secretory pathway mediated by gnom-like 1 and gnom is essential for basal polarity establishment in Arabidopsis thaliana,” <i>PNAS</i>, vol. 112, no. 7. National Academy of Sciences, pp. E806–E815, 2015.","short":"S. Doyle, A. Haegera, T. Vain, A. Rigala, C. Viotti, M. Łangowskaa, Q. Maa, J. Friml, N. Raikhel, G. Hickse, S. Robert, PNAS 112 (2015) E806–E815.","ista":"Doyle S, Haegera A, Vain T, Rigala A, Viotti C, Łangowskaa M, Maa Q, Friml J, Raikhel N, Hickse G, Robert S. 2015. An early secretory pathway mediated by gnom-like 1 and gnom is essential for basal polarity establishment in Arabidopsis thaliana. PNAS. 112(7), E806–E815.","ama":"Doyle S, Haegera A, Vain T, et al. An early secretory pathway mediated by gnom-like 1 and gnom is essential for basal polarity establishment in Arabidopsis thaliana. <i>PNAS</i>. 2015;112(7):E806-E815. doi:<a href=\"https://doi.org/10.1073/pnas.1424856112\">10.1073/pnas.1424856112</a>","chicago":"Doyle, Siamsa, Ash Haegera, Thomas Vain, Adeline Rigala, Corrado Viotti, Małgorzata Łangowskaa, Qian Maa, et al. “An Early Secretory Pathway Mediated by Gnom-like 1 and Gnom Is Essential for Basal Polarity Establishment in Arabidopsis Thaliana.” <i>PNAS</i>. National Academy of Sciences, 2015. <a href=\"https://doi.org/10.1073/pnas.1424856112\">https://doi.org/10.1073/pnas.1424856112</a>.","apa":"Doyle, S., Haegera, A., Vain, T., Rigala, A., Viotti, C., Łangowskaa, M., … Robert, S. (2015). An early secretory pathway mediated by gnom-like 1 and gnom is essential for basal polarity establishment in Arabidopsis thaliana. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1424856112\">https://doi.org/10.1073/pnas.1424856112</a>"},"project":[{"_id":"25716A02-B435-11E9-9278-68D0E5697425","grant_number":"282300","name":"Polarity and subcellular dynamics in plants","call_identifier":"FP7"}],"date_updated":"2026-06-18T17:48:36Z","quality_controlled":"1","doi":"10.1073/pnas.1424856112","oa_version":"Published Version","ddc":["580"],"year":"2015","publist_id":"5602","publication":"PNAS","date_published":"2015-02-17T00:00:00Z","volume":112,"ec_funded":1,"intvolume":"       112","language":[{"iso":"eng"}],"article_processing_charge":"No","abstract":[{"lang":"eng","text":"Spatial regulation of the plant hormone indole-3-acetic acid (IAA, or auxin) is essential for plant development. Auxin gradient establishment is mediated by polarly localized auxin transporters, including PIN-FORMED (PIN) proteins. Their localization and abundance at the plasma membrane are tightly regulated by endomembrane machinery, especially the endocytic and recycling pathways mediated by the ADP ribosylation factor guanine nucleotide exchange factor (ARF-GEF) GNOM. We assessed the role of the early secretory pathway in establishing PIN1 polarity in Arabidopsis thaliana by pharmacological and genetic approaches. We identified the compound endosidin 8 (ES8), which selectively interferes with PIN1 basal polarity without altering the polarity of apical proteins. ES8 alters the auxin distribution pattern in the root and induces a strong developmental phenotype, including reduced root length. The ARF-GEF- defective mutants gnom-like 1 ( gnl1-1) and gnom ( van7) are significantly resistant to ES8. The compound does not affect recycling or vacuolar trafficking of PIN1 but leads to its intracellular accumulation, resulting in loss of PIN1 basal polarity at the plasma membrane. Our data confirm a role for GNOM in endoplasmic reticulum (ER) - Golgi trafficking and reveal that a GNL1/GNOM-mediated early secretory pathway selectively regulates PIN1 basal polarity establishment in a manner essential for normal plant development."}],"publisher":"National Academy of Sciences","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4343110/","open_access":"1"}]},{"issue":"45","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"10","scopus_import":"1","_id":"1570","oa":1,"citation":{"mla":"Der, Ralf, and Georg S. Martius. “Novel Plasticity Rule Can Explain the Development of Sensorimotor Intelligence.” <i>PNAS</i>, vol. 112, no. 45, National Academy of Sciences, 2015, pp. E6224–32, doi:<a href=\"https://doi.org/10.1073/pnas.1508400112\">10.1073/pnas.1508400112</a>.","ieee":"R. Der and G. S. Martius, “Novel plasticity rule can explain the development of sensorimotor intelligence,” <i>PNAS</i>, vol. 112, no. 45. National Academy of Sciences, pp. E6224–E6232, 2015.","short":"R. Der, G.S. Martius, PNAS 112 (2015) E6224–E6232.","ista":"Der R, Martius GS. 2015. Novel plasticity rule can explain the development of sensorimotor intelligence. PNAS. 112(45), E6224–E6232.","chicago":"Der, Ralf, and Georg S Martius. “Novel Plasticity Rule Can Explain the Development of Sensorimotor Intelligence.” <i>PNAS</i>. National Academy of Sciences, 2015. <a href=\"https://doi.org/10.1073/pnas.1508400112\">https://doi.org/10.1073/pnas.1508400112</a>.","ama":"Der R, Martius GS. Novel plasticity rule can explain the development of sensorimotor intelligence. <i>PNAS</i>. 2015;112(45):E6224-E6232. doi:<a href=\"https://doi.org/10.1073/pnas.1508400112\">10.1073/pnas.1508400112</a>","apa":"Der, R., &#38; Martius, G. S. (2015). Novel plasticity rule can explain the development of sensorimotor intelligence. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1508400112\">https://doi.org/10.1073/pnas.1508400112</a>"},"project":[{"grant_number":"291734","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"date_updated":"2025-09-23T09:41:37Z","corr_author":"1","isi":1,"title":"Novel plasticity rule can explain the development of sensorimotor intelligence","page":"E6224 - E6232","month":"11","type":"journal_article","status":"public","department":[{"_id":"ChLa"},{"_id":"GaTk"}],"external_id":{"isi":["000364470300020"],"pmid":["26504200"]},"date_created":"2018-12-11T11:52:47Z","publication_status":"published","author":[{"last_name":"Der","first_name":"Ralf","full_name":"Der, Ralf"},{"full_name":"Martius, Georg S","last_name":"Martius","first_name":"Georg S","id":"3A276B68-F248-11E8-B48F-1D18A9856A87"}],"pmid":1,"date_published":"2015-11-10T00:00:00Z","publication":"PNAS","ec_funded":1,"volume":112,"intvolume":"       112","abstract":[{"text":"Grounding autonomous behavior in the nervous system is a fundamental challenge for neuroscience. In particular, self-organized behavioral development provides more questions than answers. Are there special functional units for curiosity, motivation, and creativity? This paper argues that these features can be grounded in synaptic plasticity itself, without requiring any higher-level constructs. We propose differential extrinsic plasticity (DEP) as a new synaptic rule for self-learning systems and apply it to a number of complex robotic systems as a test case. Without specifying any purpose or goal, seemingly purposeful and adaptive rhythmic behavior is developed, displaying a certain level of sensorimotor intelligence. These surprising results require no systemspecific modifications of the DEP rule. They rather arise from the underlying mechanism of spontaneous symmetry breaking,which is due to the tight brain body environment coupling. The new synaptic rule is biologically plausible and would be an interesting target for neurobiological investigation. We also argue that this neuronal mechanism may have been a catalyst in natural evolution.","lang":"eng"}],"main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4653169/"}],"publisher":"National Academy of Sciences","language":[{"iso":"eng"}],"article_processing_charge":"No","quality_controlled":"1","doi":"10.1073/pnas.1508400112","year":"2015","publist_id":"5601","oa_version":"Submitted Version"},{"scopus_import":"1","_id":"1571","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","issue":"48","day":"01","acknowledgement":"This work is part of the research program of the Foundation for Fundamental Research on Matter, which is part of the Netherlands Organization for Scientific Research (NWO). M.G.J.d.V. was (partially) funded by NWO Earth and Life Sciences (ALW), project 863.14.015. We thank D. M. Weinreich, J. A. G. M. de Visser, T. Paixão, J. Polechová, T. Friedlander, and A. E. Mayo for reading and commenting on earlier versions of the manuscript and B. Houchmandzadeh, O. Rivoire, and M. Hemery for discussions and suggestions on the Markov computation. Furthermore, we thank F. J. Poelwijk for sharing plasmid pCascade5 and pRD007 and Y. Yokobayashi for sharing plasmid pINV-110. We also thank the anonymous reviewers for remarks on the initial version of the manuscript.","isi":1,"OA_place":"repository","title":"Breaking evolutionary constraint with a tradeoff ratchet","oa":1,"citation":{"ama":"de Vos M, Dawid A, Šunderlíková V, Tans S. Breaking evolutionary constraint with a tradeoff ratchet. <i>Proceedings of the National Academy of Sciences</i>. 2015;112(48):14906-14911. doi:<a href=\"https://doi.org/10.1073/pnas.1510282112\">10.1073/pnas.1510282112</a>","chicago":"Vos, Marjon de, Alexandre Dawid, Vanda Šunderlíková, and Sander Tans. “Breaking Evolutionary Constraint with a Tradeoff Ratchet.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2015. <a href=\"https://doi.org/10.1073/pnas.1510282112\">https://doi.org/10.1073/pnas.1510282112</a>.","apa":"de Vos, M., Dawid, A., Šunderlíková, V., &#38; Tans, S. (2015). Breaking evolutionary constraint with a tradeoff ratchet. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1510282112\">https://doi.org/10.1073/pnas.1510282112</a>","ieee":"M. de Vos, A. Dawid, V. Šunderlíková, and S. Tans, “Breaking evolutionary constraint with a tradeoff ratchet,” <i>Proceedings of the National Academy of Sciences</i>, vol. 112, no. 48. National Academy of Sciences, pp. 14906–14911, 2015.","mla":"de Vos, Marjon, et al. “Breaking Evolutionary Constraint with a Tradeoff Ratchet.” <i>Proceedings of the National Academy of Sciences</i>, vol. 112, no. 48, National Academy of Sciences, 2015, pp. 14906–11, doi:<a href=\"https://doi.org/10.1073/pnas.1510282112\">10.1073/pnas.1510282112</a>.","ista":"de Vos M, Dawid A, Šunderlíková V, Tans S. 2015. Breaking evolutionary constraint with a tradeoff ratchet. Proceedings of the National Academy of Sciences. 112(48), 14906–14911.","short":"M. de Vos, A. Dawid, V. Šunderlíková, S. Tans, Proceedings of the National Academy of Sciences 112 (2015) 14906–14911."},"date_updated":"2025-09-23T08:03:27Z","status":"public","type":"journal_article","month":"12","page":"14906 - 14911","publication_status":"published","pmid":1,"author":[{"full_name":"De Vos, Marjon","last_name":"De Vos","first_name":"Marjon","id":"3111FFAC-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Dawid","first_name":"Alexandre","full_name":"Dawid, Alexandre"},{"full_name":"Šunderlíková, Vanda","last_name":"Šunderlíková","first_name":"Vanda"},{"full_name":"Tans, Sander","first_name":"Sander","last_name":"Tans"}],"department":[{"_id":"ToBo"}],"external_id":{"isi":["000365988900054"],"pmid":["26567153"]},"date_created":"2018-12-11T11:52:47Z","volume":112,"date_published":"2015-12-01T00:00:00Z","publication":"Proceedings of the National Academy of Sciences","intvolume":"       112","OA_type":"green","article_processing_charge":"No","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Epistatic interactions can frustrate and shape evolutionary change. Indeed, phenotypes may fail to evolve when essential mutations are only accessible through positive selection if they are fixed simultaneously. How environmental variability affects such constraints is poorly understood. Here, we studied genetic constraints in fixed and fluctuating environments using the Escherichia coli lac operon as a model system for genotype-environment interactions. We found that, in different fixed environments, all trajectories that were reconstructed by applying point mutations within the transcription factor-operator interface became trapped at suboptima, where no additional improvements were possible. Paradoxically, repeated switching between these same environments allows unconstrained adaptation by continuous improvements. This evolutionary mode is explained by pervasive cross-environmental tradeoffs that reposition the peaks in such a way that trapped genotypes can repeatedly climb ascending slopes and hence, escape adaptive stasis. Using a Markov approach, we developed a mathematical framework to quantify the landscape-crossing rates and show that this ratchet-like adaptive mechanism is robust in a wide spectrum of fluctuating environments. Overall, this study shows that genetic constraints can be overcome by environmental change and that crossenvironmental tradeoffs do not necessarily impede but also, can facilitate adaptive evolution. Because tradeoffs and environmental variability are ubiquitous in nature, we speculate this evolutionary mode to be of general relevance."}],"publisher":"National Academy of Sciences","main_file_link":[{"url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC4672788/","open_access":"1"}],"doi":"10.1073/pnas.1510282112","quality_controlled":"1","oa_version":"Submitted Version","article_type":"original","year":"2015","publist_id":"5600"},{"intvolume":"       339","date_published":"2015-06-23T00:00:00Z","publication":"Communications in Mathematical Physics","volume":339,"language":[{"iso":"eng"}],"article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1312.7873"}],"publisher":"Springer","abstract":[{"lang":"eng","text":"We consider the quantum ferromagnetic Heisenberg model in three dimensions, for all spins S ≥ 1/2. We rigorously prove the validity of the spin-wave approximation for the excitation spectrum, at the level of the first non-trivial contribution to the free energy at low temperatures. Our proof comes with explicit, constructive upper and lower bounds on the error term. It uses in an essential way the bosonic formulation of the model in terms of the Holstein-Primakoff representation. In this language, the model describes interacting bosons with a hard-core on-site repulsion and a nearest-neighbor attraction. This attractive interaction makes the lower bound on the free energy particularly tricky: the key idea there is to prove a differential inequality for the two-particle density, which is thereby shown to be smaller than the probability density of a suitably weighted two-particle random process on the lattice.\r\n"}],"quality_controlled":"1","doi":"10.1007/s00220-015-2402-0","oa_version":"Preprint","publist_id":"5599","year":"2015","_id":"1572","scopus_import":"1","day":"23","issue":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Validity of the spin-wave approximation for the free energy of the Heisenberg ferromagnet","isi":1,"arxiv":1,"date_updated":"2025-09-29T11:04:37Z","oa":1,"citation":{"apa":"Correggi, M., Giuliani, A., &#38; Seiringer, R. (2015). Validity of the spin-wave approximation for the free energy of the Heisenberg ferromagnet. <i>Communications in Mathematical Physics</i>. Springer. <a href=\"https://doi.org/10.1007/s00220-015-2402-0\">https://doi.org/10.1007/s00220-015-2402-0</a>","ama":"Correggi M, Giuliani A, Seiringer R. Validity of the spin-wave approximation for the free energy of the Heisenberg ferromagnet. <i>Communications in Mathematical Physics</i>. 2015;339(1):279-307. doi:<a href=\"https://doi.org/10.1007/s00220-015-2402-0\">10.1007/s00220-015-2402-0</a>","chicago":"Correggi, Michele, Alessandro Giuliani, and Robert Seiringer. “Validity of the Spin-Wave Approximation for the Free Energy of the Heisenberg Ferromagnet.” <i>Communications in Mathematical Physics</i>. Springer, 2015. <a href=\"https://doi.org/10.1007/s00220-015-2402-0\">https://doi.org/10.1007/s00220-015-2402-0</a>.","ista":"Correggi M, Giuliani A, Seiringer R. 2015. Validity of the spin-wave approximation for the free energy of the Heisenberg ferromagnet. Communications in Mathematical Physics. 339(1), 279–307.","short":"M. Correggi, A. Giuliani, R. Seiringer, Communications in Mathematical Physics 339 (2015) 279–307.","mla":"Correggi, Michele, et al. “Validity of the Spin-Wave Approximation for the Free Energy of the Heisenberg Ferromagnet.” <i>Communications in Mathematical Physics</i>, vol. 339, no. 1, Springer, 2015, pp. 279–307, doi:<a href=\"https://doi.org/10.1007/s00220-015-2402-0\">10.1007/s00220-015-2402-0</a>.","ieee":"M. Correggi, A. Giuliani, and R. Seiringer, “Validity of the spin-wave approximation for the free energy of the Heisenberg ferromagnet,” <i>Communications in Mathematical Physics</i>, vol. 339, no. 1. Springer, pp. 279–307, 2015."},"status":"public","page":"279 - 307","month":"06","type":"journal_article","author":[{"first_name":"Michele","last_name":"Correggi","full_name":"Correggi, Michele"},{"first_name":"Alessandro","last_name":"Giuliani","full_name":"Giuliani, Alessandro"},{"full_name":"Seiringer, Robert","orcid":"0000-0002-6781-0521","first_name":"Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"publication_status":"published","external_id":{"isi":["000357582800010"],"arxiv":["1312.7873"]},"date_created":"2018-12-11T11:52:47Z","department":[{"_id":"RoSe"}]},{"_id":"1573","scopus_import":"1","day":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","issue":"10","title":"Unconditional uniqueness for the cubic gross pitaevskii hierarchy via quantum de finetti","arxiv":1,"isi":1,"date_updated":"2025-09-29T10:59:59Z","project":[{"name":"NSERC Postdoctoral fellowship","_id":"26450934-B435-11E9-9278-68D0E5697425"}],"oa":1,"citation":{"ieee":"T. Chen, C. Hainzl, N. Pavlović, and R. Seiringer, “Unconditional uniqueness for the cubic gross pitaevskii hierarchy via quantum de finetti,” <i>Communications on Pure and Applied Mathematics</i>, vol. 68, no. 10. Wiley, pp. 1845–1884, 2015.","mla":"Chen, Thomas, et al. “Unconditional Uniqueness for the Cubic Gross Pitaevskii Hierarchy via Quantum de Finetti.” <i>Communications on Pure and Applied Mathematics</i>, vol. 68, no. 10, Wiley, 2015, pp. 1845–84, doi:<a href=\"https://doi.org/10.1002/cpa.21552\">10.1002/cpa.21552</a>.","ista":"Chen T, Hainzl C, Pavlović N, Seiringer R. 2015. Unconditional uniqueness for the cubic gross pitaevskii hierarchy via quantum de finetti. Communications on Pure and Applied Mathematics. 68(10), 1845–1884.","short":"T. Chen, C. Hainzl, N. Pavlović, R. Seiringer, Communications on Pure and Applied Mathematics 68 (2015) 1845–1884.","ama":"Chen T, Hainzl C, Pavlović N, Seiringer R. Unconditional uniqueness for the cubic gross pitaevskii hierarchy via quantum de finetti. <i>Communications on Pure and Applied Mathematics</i>. 2015;68(10):1845-1884. doi:<a href=\"https://doi.org/10.1002/cpa.21552\">10.1002/cpa.21552</a>","chicago":"Chen, Thomas, Christian Hainzl, Nataša Pavlović, and Robert Seiringer. “Unconditional Uniqueness for the Cubic Gross Pitaevskii Hierarchy via Quantum de Finetti.” <i>Communications on Pure and Applied Mathematics</i>. Wiley, 2015. <a href=\"https://doi.org/10.1002/cpa.21552\">https://doi.org/10.1002/cpa.21552</a>.","apa":"Chen, T., Hainzl, C., Pavlović, N., &#38; Seiringer, R. (2015). Unconditional uniqueness for the cubic gross pitaevskii hierarchy via quantum de finetti. <i>Communications on Pure and Applied Mathematics</i>. Wiley. <a href=\"https://doi.org/10.1002/cpa.21552\">https://doi.org/10.1002/cpa.21552</a>"},"status":"public","month":"10","type":"journal_article","page":"1845 - 1884","author":[{"first_name":"Thomas","last_name":"Chen","full_name":"Chen, Thomas"},{"last_name":"Hainzl","first_name":"Christian","full_name":"Hainzl, Christian"},{"last_name":"Pavlović","first_name":"Nataša","full_name":"Pavlović, Nataša"},{"full_name":"Seiringer, Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","last_name":"Seiringer","orcid":"0000-0002-6781-0521","first_name":"Robert"}],"publication_status":"published","date_created":"2018-12-11T11:52:48Z","external_id":{"isi":["000359670800004"],"arxiv":["1307.3168"]},"department":[{"_id":"RoSe"}],"intvolume":"        68","volume":68,"publication":"Communications on Pure and Applied Mathematics","date_published":"2015-10-01T00:00:00Z","article_processing_charge":"No","language":[{"iso":"eng"}],"main_file_link":[{"url":"http://arxiv.org/abs/1307.3168","open_access":"1"}],"publisher":"Wiley","abstract":[{"text":"We present a new, simpler proof of the unconditional uniqueness of solutions to the cubic Gross-Pitaevskii hierarchy in ℝ3. One of the main tools in our analysis is the quantum de Finetti theorem. Our uniqueness result is equivalent to the one established in the celebrated works of Erdos, Schlein, and Yau.","lang":"eng"}],"doi":"10.1002/cpa.21552","quality_controlled":"1","oa_version":"Preprint","publist_id":"5598","year":"2015"},{"acknowledgement":"of the European Research Council (project ERC-2011-StG-20101109-PSDP) (to J.F.), a FEBS long-term fellowship (to P.M.) ","day":"18","article_number":"8821","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1574","scopus_import":"1","file_date_updated":"2020-07-14T12:45:02Z","date_updated":"2025-09-22T14:28:09Z","oa":1,"citation":{"ieee":"Q. Chen <i>et al.</i>, “A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development,” <i>Nature Communications</i>, vol. 6. Nature Publishing Group, 2015.","mla":"Chen, Qian, et al. “A Coherent Transcriptional Feed-Forward Motif Model for Mediating Auxin-Sensitive PIN3 Expression during Lateral Root Development.” <i>Nature Communications</i>, vol. 6, 8821, Nature Publishing Group, 2015, doi:<a href=\"https://doi.org/10.1038/ncomms9821\">10.1038/ncomms9821</a>.","short":"Q. Chen, Y. Liu, S. Maere, E. Lee, G. Van Isterdael, Z. Xie, W. Xuan, J. Lucas, V. Vassileva, S. Kitakura, P. Marhavý, K.T. Wabnik, N. Geldner, E. Benková, J. Le, H. Fukaki, E. Grotewold, C. Li, J. Friml, F. Sack, T. Beeckman, S. Vanneste, Nature Communications 6 (2015).","ista":"Chen Q, Liu Y, Maere S, Lee E, Van Isterdael G, Xie Z, Xuan W, Lucas J, Vassileva V, Kitakura S, Marhavý P, Wabnik KT, Geldner N, Benková E, Le J, Fukaki H, Grotewold E, Li C, Friml J, Sack F, Beeckman T, Vanneste S. 2015. A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. Nature Communications. 6, 8821.","ama":"Chen Q, Liu Y, Maere S, et al. A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. <i>Nature Communications</i>. 2015;6. doi:<a href=\"https://doi.org/10.1038/ncomms9821\">10.1038/ncomms9821</a>","chicago":"Chen, Qian, Yang Liu, Steven Maere, Eunkyoung Lee, Gert Van Isterdael, Zidian Xie, Wei Xuan, et al. “A Coherent Transcriptional Feed-Forward Motif Model for Mediating Auxin-Sensitive PIN3 Expression during Lateral Root Development.” <i>Nature Communications</i>. Nature Publishing Group, 2015. <a href=\"https://doi.org/10.1038/ncomms9821\">https://doi.org/10.1038/ncomms9821</a>.","apa":"Chen, Q., Liu, Y., Maere, S., Lee, E., Van Isterdael, G., Xie, Z., … Vanneste, S. (2015). A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncomms9821\">https://doi.org/10.1038/ncomms9821</a>"},"title":"A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development","isi":1,"file":[{"date_updated":"2020-07-14T12:45:02Z","date_created":"2018-12-12T10:14:32Z","file_name":"IST-2016-477-v1+1_ncomms9821.pdf","relation":"main_file","access_level":"open_access","creator":"system","content_type":"application/pdf","file_size":1701815,"file_id":"5085","checksum":"8ff5c108899b548806e1cb7a302fe76d"}],"month":"11","type":"journal_article","status":"public","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"external_id":{"isi":["000366295500007"]},"date_created":"2018-12-11T11:52:48Z","department":[{"_id":"EvBe"},{"_id":"JiFr"}],"author":[{"full_name":"Chen, Qian","last_name":"Chen","first_name":"Qian"},{"full_name":"Liu, Yang","last_name":"Liu","first_name":"Yang"},{"last_name":"Maere","first_name":"Steven","full_name":"Maere, Steven"},{"first_name":"Eunkyoung","last_name":"Lee","full_name":"Lee, Eunkyoung"},{"full_name":"Van Isterdael, Gert","first_name":"Gert","last_name":"Van Isterdael"},{"first_name":"Zidian","last_name":"Xie","full_name":"Xie, Zidian"},{"first_name":"Wei","last_name":"Xuan","full_name":"Xuan, Wei"},{"last_name":"Lucas","first_name":"Jessica","full_name":"Lucas, Jessica"},{"full_name":"Vassileva, Valya","last_name":"Vassileva","first_name":"Valya"},{"first_name":"Saeko","last_name":"Kitakura","full_name":"Kitakura, Saeko"},{"id":"3F45B078-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","orcid":"0000-0001-5227-5741","last_name":"Marhavy","full_name":"Marhavy, Peter"},{"full_name":"Wabnik, Krzysztof T","first_name":"Krzysztof T","orcid":"0000-0001-7263-0560","last_name":"Wabnik","id":"4DE369A4-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Geldner, Niko","last_name":"Geldner","first_name":"Niko"},{"id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","orcid":"0000-0002-8510-9739","last_name":"Benková","full_name":"Benková, Eva"},{"first_name":"Jie","last_name":"Le","full_name":"Le, Jie"},{"full_name":"Fukaki, Hidehiro","first_name":"Hidehiro","last_name":"Fukaki"},{"full_name":"Grotewold, Erich","last_name":"Grotewold","first_name":"Erich"},{"full_name":"Li, Chuanyou","first_name":"Chuanyou","last_name":"Li"},{"full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","orcid":"0000-0002-8302-7596","first_name":"Jirí"},{"last_name":"Sack","first_name":"Fred","full_name":"Sack, Fred"},{"full_name":"Beeckman, Tom","last_name":"Beeckman","first_name":"Tom"},{"full_name":"Vanneste, Steffen","first_name":"Steffen","last_name":"Vanneste"}],"publication_status":"published","intvolume":"         6","publication":"Nature Communications","date_published":"2015-11-18T00:00:00Z","volume":6,"pubrep_id":"477","publisher":"Nature Publishing Group","abstract":[{"text":"Multiple plant developmental processes, such as lateral root development, depend on auxin distribution patterns that are in part generated by the PIN-formed family of auxin-efflux transporters. Here we propose that AUXIN RESPONSE FACTOR7 (ARF7) and the ARF7-regulated FOUR LIPS/MYB124 (FLP) transcription factors jointly form a coherent feed-forward motif that mediates the auxin-responsive PIN3 transcription in planta to steer the early steps of lateral root formation. This regulatory mechanism might endow the PIN3 circuitry with a temporal 'memory' of auxin stimuli, potentially maintaining and enhancing the robustness of the auxin flux directionality during lateral root development. The cooperative action between canonical auxin signalling and other transcription factors might constitute a general mechanism by which transcriptional auxin-sensitivity can be regulated at a tissue-specific level.","lang":"eng"}],"language":[{"iso":"eng"}],"article_processing_charge":"No","has_accepted_license":"1","quality_controlled":"1","doi":"10.1038/ncomms9821","publist_id":"5597","year":"2015","ddc":["580"],"oa_version":"Published Version"},{"month":"06","type":"journal_article","file":[{"file_size":4530215,"content_type":"application/pdf","file_id":"4915","checksum":"bae12e86be2adb28253f890b8bba8315","creator":"system","file_name":"IST-2016-476-v1+1_ncomms8526.pdf","date_updated":"2020-07-14T12:45:02Z","date_created":"2018-12-12T10:11:58Z","access_level":"open_access","relation":"main_file"}],"status":"public","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"department":[{"_id":"MiSi"}],"date_created":"2018-12-11T11:52:48Z","external_id":{"isi":["000357179400003"]},"publication_status":"published","author":[{"full_name":"Chabaud, Mélanie","first_name":"Mélanie","last_name":"Chabaud"},{"full_name":"Heuzé, Mélina","first_name":"Mélina","last_name":"Heuzé"},{"first_name":"Marine","last_name":"Bretou","full_name":"Bretou, Marine"},{"full_name":"Vargas, Pablo","first_name":"Pablo","last_name":"Vargas"},{"last_name":"Maiuri","first_name":"Paolo","full_name":"Maiuri, Paolo"},{"first_name":"Paola","last_name":"Solanes","full_name":"Solanes, Paola"},{"first_name":"Mathieu","last_name":"Maurin","full_name":"Maurin, Mathieu"},{"full_name":"Terriac, Emmanuel","last_name":"Terriac","first_name":"Emmanuel"},{"first_name":"Maël","last_name":"Le Berre","full_name":"Le Berre, Maël"},{"last_name":"Lankar","first_name":"Danielle","full_name":"Lankar, Danielle"},{"full_name":"Piolot, Tristan","last_name":"Piolot","first_name":"Tristan"},{"full_name":"Adelstein, Robert","first_name":"Robert","last_name":"Adelstein"},{"last_name":"Zhang","first_name":"Yingfan","full_name":"Zhang, Yingfan"},{"full_name":"Sixt, Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6620-9179","first_name":"Michael K","last_name":"Sixt"},{"last_name":"Jacobelli","first_name":"Jordan","full_name":"Jacobelli, Jordan"},{"last_name":"Bénichou","first_name":"Olivier","full_name":"Bénichou, Olivier"},{"full_name":"Voituriez, Raphaël","last_name":"Voituriez","first_name":"Raphaël"},{"first_name":"Matthieu","last_name":"Piel","full_name":"Piel, Matthieu"},{"last_name":"Lennon Duménil","first_name":"Ana","full_name":"Lennon Duménil, Ana"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"25","article_number":"7526","acknowledgement":"M.C. and M.L.H. were supported by fellowships from the Fondation pour la Recherche Médicale and the Association pour la Recherche contre le Cancer, respectively. This work was funded by grants from the City of Paris and the European Research Council to A.-M.L.-D. (Strapacemi 243103), the Association Nationale pour la Recherche (ANR-09-PIRI-0027-PCVI) and the InnaBiosanté foundation (Micemico) to A.-M.L.-D., M.P. and R.V., and the DCBIOL Labex from the French Government (ANR-10-IDEX-0001-02-PSL* and ANR-11-LABX-0043). The super-resolution SIM microscope was funded through an ERC Advanced Investigator Grant (250367) to Edith Heard (CNRS UMR3215/Inserm U934, Institut Curie).","scopus_import":"1","file_date_updated":"2020-07-14T12:45:02Z","_id":"1575","oa":1,"citation":{"ama":"Chabaud M, Heuzé M, Bretou M, et al. Cell migration and antigen capture are antagonistic processes coupled by myosin II in dendritic cells. <i>Nature Communications</i>. 2015;6. doi:<a href=\"https://doi.org/10.1038/ncomms8526\">10.1038/ncomms8526</a>","chicago":"Chabaud, Mélanie, Mélina Heuzé, Marine Bretou, Pablo Vargas, Paolo Maiuri, Paola Solanes, Mathieu Maurin, et al. “Cell Migration and Antigen Capture Are Antagonistic Processes Coupled by Myosin II in Dendritic Cells.” <i>Nature Communications</i>. Nature Publishing Group, 2015. <a href=\"https://doi.org/10.1038/ncomms8526\">https://doi.org/10.1038/ncomms8526</a>.","apa":"Chabaud, M., Heuzé, M., Bretou, M., Vargas, P., Maiuri, P., Solanes, P., … Lennon Duménil, A. (2015). Cell migration and antigen capture are antagonistic processes coupled by myosin II in dendritic cells. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncomms8526\">https://doi.org/10.1038/ncomms8526</a>","mla":"Chabaud, Mélanie, et al. “Cell Migration and Antigen Capture Are Antagonistic Processes Coupled by Myosin II in Dendritic Cells.” <i>Nature Communications</i>, vol. 6, 7526, Nature Publishing Group, 2015, doi:<a href=\"https://doi.org/10.1038/ncomms8526\">10.1038/ncomms8526</a>.","ieee":"M. Chabaud <i>et al.</i>, “Cell migration and antigen capture are antagonistic processes coupled by myosin II in dendritic cells,” <i>Nature Communications</i>, vol. 6. Nature Publishing Group, 2015.","ista":"Chabaud M, Heuzé M, Bretou M, Vargas P, Maiuri P, Solanes P, Maurin M, Terriac E, Le Berre M, Lankar D, Piolot T, Adelstein R, Zhang Y, Sixt MK, Jacobelli J, Bénichou O, Voituriez R, Piel M, Lennon Duménil A. 2015. Cell migration and antigen capture are antagonistic processes coupled by myosin II in dendritic cells. Nature Communications. 6, 7526.","short":"M. Chabaud, M. Heuzé, M. Bretou, P. Vargas, P. Maiuri, P. Solanes, M. Maurin, E. Terriac, M. Le Berre, D. Lankar, T. Piolot, R. Adelstein, Y. Zhang, M.K. Sixt, J. Jacobelli, O. Bénichou, R. Voituriez, M. Piel, A. Lennon Duménil, Nature Communications 6 (2015)."},"date_updated":"2025-09-23T08:13:23Z","isi":1,"title":"Cell migration and antigen capture are antagonistic processes coupled by myosin II in dendritic cells","doi":"10.1038/ncomms8526","quality_controlled":"1","has_accepted_license":"1","year":"2015","publist_id":"5596","ddc":["570"],"oa_version":"Published Version","volume":6,"date_published":"2015-06-25T00:00:00Z","publication":"Nature Communications","intvolume":"         6","pubrep_id":"476","abstract":[{"lang":"eng","text":"The immune response relies on the migration of leukocytes and on their ability to stop in precise anatomical locations to fulfil their task. How leukocyte migration and function are coordinated is unknown. Here we show that in immature dendritic cells, which patrol their environment by engulfing extracellular material, cell migration and antigen capture are antagonistic. This antagonism results from transient enrichment of myosin IIA at the cell front, which disrupts the back-to-front gradient of the motor protein, slowing down locomotion but promoting antigen capture. We further highlight that myosin IIA enrichment at the cell front requires the MHC class II-associated invariant chain (Ii). Thus, by controlling myosin IIA localization, Ii imposes on dendritic cells an intermittent antigen capture behaviour that might facilitate environment patrolling. We propose that the requirement for myosin II in both cell migration and specific cell functions may provide a general mechanism for their coordination in time and space."}],"publisher":"Nature Publishing Group","article_processing_charge":"No","language":[{"iso":"eng"}]},{"title":"Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation","arxiv":1,"corr_author":"1","isi":1,"date_updated":"2026-04-08T13:55:46Z","project":[{"_id":"25B07788-B435-11E9-9278-68D0E5697425","grant_number":"250152","name":"Limits to selection in biology and in evolutionary computation","call_identifier":"FP7"}],"citation":{"chicago":"Cepeda Humerez, Sarah A, Georg Rieckh, and Gašper Tkačik. “Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation.” <i>Physical Review Letters</i>. American Physical Society, 2015. <a href=\"https://doi.org/10.1103/PhysRevLett.115.248101\">https://doi.org/10.1103/PhysRevLett.115.248101</a>.","ama":"Cepeda Humerez SA, Rieckh G, Tkačik G. Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation. <i>Physical Review Letters</i>. 2015;115(24). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.115.248101\">10.1103/PhysRevLett.115.248101</a>","apa":"Cepeda Humerez, S. A., Rieckh, G., &#38; Tkačik, G. (2015). Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.115.248101\">https://doi.org/10.1103/PhysRevLett.115.248101</a>","ieee":"S. A. Cepeda Humerez, G. Rieckh, and G. Tkačik, “Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation,” <i>Physical Review Letters</i>, vol. 115, no. 24. American Physical Society, 2015.","mla":"Cepeda Humerez, Sarah A., et al. “Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation.” <i>Physical Review Letters</i>, vol. 115, no. 24, 248101, American Physical Society, 2015, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.115.248101\">10.1103/PhysRevLett.115.248101</a>.","ista":"Cepeda Humerez SA, Rieckh G, Tkačik G. 2015. Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation. Physical Review Letters. 115(24), 248101.","short":"S.A. Cepeda Humerez, G. Rieckh, G. Tkačik, Physical Review Letters 115 (2015)."},"oa":1,"_id":"1576","scopus_import":"1","day":"08","article_number":"248101","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","issue":"24","author":[{"first_name":"Sarah A","last_name":"Cepeda Humerez","id":"3DEE19A4-F248-11E8-B48F-1D18A9856A87","full_name":"Cepeda Humerez, Sarah A"},{"first_name":"Georg","last_name":"Rieckh","id":"34DA8BD6-F248-11E8-B48F-1D18A9856A87","full_name":"Rieckh, Georg"},{"full_name":"Tkacik, Gasper","first_name":"Gasper","orcid":"0000-0002-6699-1455","last_name":"Tkacik","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87"}],"publication_status":"published","related_material":{"record":[{"status":"public","id":"6473","relation":"part_of_dissertation"}]},"external_id":{"isi":["000366106700014"],"arxiv":["1504.05716"]},"date_created":"2018-12-11T11:52:49Z","department":[{"_id":"GaTk"}],"status":"public","type":"journal_article","month":"12","article_processing_charge":"No","language":[{"iso":"eng"}],"publisher":"American Physical Society","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1504.05716"}],"abstract":[{"lang":"eng","text":"Gene expression is controlled primarily by interactions between transcription factor proteins (TFs) and the regulatory DNA sequence, a process that can be captured well by thermodynamic models of regulation. These models, however, neglect regulatory crosstalk: the possibility that noncognate TFs could initiate transcription, with potentially disastrous effects for the cell. Here, we estimate the importance of crosstalk, suggest that its avoidance strongly constrains equilibrium models of TF binding, and propose an alternative nonequilibrium scheme that implements kinetic proofreading to suppress erroneous initiation. This proposal is consistent with the observed covalent modifications of the transcriptional apparatus and predicts increased noise in gene expression as a trade-off for improved specificity. Using information theory, we quantify this trade-off to find when optimal proofreading architectures are favored over their equilibrium counterparts. Such architectures exhibit significant super-Poisson noise at low expression in steady state."}],"intvolume":"       115","volume":115,"ec_funded":1,"publication":"Physical Review Letters","date_published":"2015-12-08T00:00:00Z","oa_version":"Preprint","publist_id":"5595","year":"2015","doi":"10.1103/PhysRevLett.115.248101","quality_controlled":"1"},{"scopus_import":"1","_id":"1577","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"40","day":"06","acknowledgement":"This work was supported by grants from Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), FAPERJ, and CAPES (to A.B.C.), and National Institutes of Health Grant R01 GM64590 (to A.G.C. and A.B.C.).\r\nWe thank M. Vibranovski, C. Bergman, and the Berkeley Drosophila Genome Project for access to unpublished data; M. Vibranovski, R. Hoskins, S. Celniker, C. Kennedy, J. Carlson, S. Galasinski, B. Wakimoto, J. Yasuhara, G. Sutton, M. Kuhner, J. Felsenstein, and C. Santos for help in various steps of the work; and B. Bitner-Mathe, R. Ventura, the members of the A.B.C. and A.G.C. laboratories, and two reviewers for many valuable comments on the manuscript.","isi":1,"title":"Birth of a new gene on the Y chromosome of Drosophila melanogaster","oa":1,"citation":{"chicago":"Carvalho, Antonio, Beatriz Vicoso, Claudia Russo, Bonnielin Swenor, and Andrew Clark. “Birth of a New Gene on the Y Chromosome of Drosophila Melanogaster.” <i>PNAS</i>. National Academy of Sciences, 2015. <a href=\"https://doi.org/10.1073/pnas.1516543112\">https://doi.org/10.1073/pnas.1516543112</a>.","ama":"Carvalho A, Vicoso B, Russo C, Swenor B, Clark A. Birth of a new gene on the Y chromosome of Drosophila melanogaster. <i>PNAS</i>. 2015;112(40):12450-12455. doi:<a href=\"https://doi.org/10.1073/pnas.1516543112\">10.1073/pnas.1516543112</a>","apa":"Carvalho, A., Vicoso, B., Russo, C., Swenor, B., &#38; Clark, A. (2015). Birth of a new gene on the Y chromosome of Drosophila melanogaster. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1516543112\">https://doi.org/10.1073/pnas.1516543112</a>","ieee":"A. Carvalho, B. Vicoso, C. Russo, B. Swenor, and A. Clark, “Birth of a new gene on the Y chromosome of Drosophila melanogaster,” <i>PNAS</i>, vol. 112, no. 40. National Academy of Sciences, pp. 12450–12455, 2015.","mla":"Carvalho, Antonio, et al. “Birth of a New Gene on the Y Chromosome of Drosophila Melanogaster.” <i>PNAS</i>, vol. 112, no. 40, National Academy of Sciences, 2015, pp. 12450–55, doi:<a href=\"https://doi.org/10.1073/pnas.1516543112\">10.1073/pnas.1516543112</a>.","ista":"Carvalho A, Vicoso B, Russo C, Swenor B, Clark A. 2015. Birth of a new gene on the Y chromosome of Drosophila melanogaster. PNAS. 112(40), 12450–12455.","short":"A. Carvalho, B. Vicoso, C. Russo, B. Swenor, A. Clark, PNAS 112 (2015) 12450–12455."},"date_updated":"2026-06-18T17:49:06Z","status":"public","month":"10","type":"journal_article","page":"12450 - 12455","publication_status":"published","author":[{"last_name":"Carvalho","first_name":"Antonio","full_name":"Carvalho, Antonio"},{"id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","last_name":"Vicoso","orcid":"0000-0002-4579-8306","first_name":"Beatriz","full_name":"Vicoso, Beatriz"},{"first_name":"Claudia","last_name":"Russo","full_name":"Russo, Claudia"},{"full_name":"Swenor, Bonnielin","first_name":"Bonnielin","last_name":"Swenor"},{"full_name":"Clark, Andrew","first_name":"Andrew","last_name":"Clark"}],"pmid":1,"department":[{"_id":"BeVi"}],"date_created":"2018-12-11T11:52:49Z","external_id":{"isi":["000363125400061"],"pmid":["26385968"]},"volume":112,"publication":"PNAS","date_published":"2015-10-06T00:00:00Z","intvolume":"       112","article_processing_charge":"No","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Contrary to the pattern seen in mammalian sex chromosomes, where most Y-linked genes have X-linked homologs, the Drosophila X and Y chromosomes appear to be unrelated. Most of the Y-linked genes have autosomal paralogs, so autosome-to-Y transposition must be the main source of Drosophila Y-linked genes. Here we show how these genes were acquired. We found a previously unidentified gene (flagrante delicto Y, FDY) that originated from a recent duplication of the autosomal gene vig2 to the Y chromosome of Drosophila melanogaster. Four contiguous genes were duplicated along with vig2, but they became pseudogenes through the accumulation of deletions and transposable element insertions, whereas FDY remained functional, acquired testis-specific expression, and now accounts for ∼20% of the vig2-like mRNA in testis. FDY is absent in the closest relatives of D. melanogaster, and DNA sequence divergence indicates that the duplication to the Y chromosome occurred ∼2 million years ago. Thus, FDY provides a snapshot of the early stages of the establishment of a Y-linked gene and demonstrates how the Drosophila Y has been accumulating autosomal genes."}],"main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4603513/","open_access":"1"}],"publisher":"National Academy of Sciences","doi":"10.1073/pnas.1516543112","quality_controlled":"1","ddc":["570"],"oa_version":"Published Version","article_type":"original","year":"2015","publist_id":"5594"},{"publisher":"Elsevier","abstract":[{"text":"We prove that the dual of the digital Voronoi diagram constructed by flooding the plane from the data points gives a geometrically and topologically correct dual triangulation. This provides the proof of correctness for recently developed GPU algorithms that outperform traditional CPU algorithms for constructing two-dimensional Delaunay triangulations.","lang":"eng"}],"article_processing_charge":"No","language":[{"iso":"eng"}],"intvolume":"        48","volume":48,"publication":"Computational Geometry","date_published":"2015-08-01T00:00:00Z","publist_id":"5593","year":"2015","oa_version":"None","doi":"10.1016/j.comgeo.2015.04.001","quality_controlled":"1","date_updated":"2025-09-29T10:58:50Z","citation":{"chicago":"Cao, Thanhtung, Herbert Edelsbrunner, and Tiowseng Tan. “Triangulations from Topologically Correct Digital Voronoi Diagrams.” <i>Computational Geometry</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.comgeo.2015.04.001\">https://doi.org/10.1016/j.comgeo.2015.04.001</a>.","ama":"Cao T, Edelsbrunner H, Tan T. Triangulations from topologically correct digital Voronoi diagrams. <i>Computational Geometry</i>. 2015;48(7):507-519. doi:<a href=\"https://doi.org/10.1016/j.comgeo.2015.04.001\">10.1016/j.comgeo.2015.04.001</a>","apa":"Cao, T., Edelsbrunner, H., &#38; Tan, T. (2015). Triangulations from topologically correct digital Voronoi diagrams. <i>Computational Geometry</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.comgeo.2015.04.001\">https://doi.org/10.1016/j.comgeo.2015.04.001</a>","mla":"Cao, Thanhtung, et al. “Triangulations from Topologically Correct Digital Voronoi Diagrams.” <i>Computational Geometry</i>, vol. 48, no. 7, Elsevier, 2015, pp. 507–19, doi:<a href=\"https://doi.org/10.1016/j.comgeo.2015.04.001\">10.1016/j.comgeo.2015.04.001</a>.","ieee":"T. Cao, H. Edelsbrunner, and T. Tan, “Triangulations from topologically correct digital Voronoi diagrams,” <i>Computational Geometry</i>, vol. 48, no. 7. Elsevier, pp. 507–519, 2015.","ista":"Cao T, Edelsbrunner H, Tan T. 2015. Triangulations from topologically correct digital Voronoi diagrams. Computational Geometry. 48(7), 507–519.","short":"T. Cao, H. Edelsbrunner, T. Tan, Computational Geometry 48 (2015) 507–519."},"title":"Triangulations from topologically correct digital Voronoi diagrams","isi":1,"day":"01","acknowledgement":"The research of the second author is partially supported by NSF under grant DBI-0820624 and by DARPA under grants HR011-05-1-0057 and HR0011-09-006\r\n","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","issue":"7","_id":"1578","scopus_import":"1","date_created":"2018-12-11T11:52:49Z","external_id":{"isi":["000355887700001"]},"department":[{"_id":"HeEd"}],"author":[{"full_name":"Cao, Thanhtung","last_name":"Cao","first_name":"Thanhtung"},{"orcid":"0000-0002-9823-6833","first_name":"Herbert","last_name":"Edelsbrunner","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","full_name":"Edelsbrunner, Herbert"},{"first_name":"Tiowseng","last_name":"Tan","full_name":"Tan, Tiowseng"}],"publication_status":"published","type":"journal_article","month":"08","page":"507 - 519","status":"public"},{"acknowledgement":"This research was supported in part by NSF grant DMS-915211 and the Institut Mittag-Leffler.\r\n","day":"01","issue":"6","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1579","scopus_import":"1","date_updated":"2025-06-11T06:40:32Z","oa":1,"citation":{"ama":"Brooks C, Martin del Campo Sanchez A, Sottile F. Galois groups of Schubert problems of lines are at least alternating. <i>Transactions of the American Mathematical Society</i>. 2015;367(6):4183-4206. doi:<a href=\"https://doi.org/10.1090/S0002-9947-2014-06192-8\">10.1090/S0002-9947-2014-06192-8</a>","chicago":"Brooks, Christopher, Abraham Martin del Campo Sanchez, and Frank Sottile. “Galois Groups of Schubert Problems of Lines Are at Least Alternating.” <i>Transactions of the American Mathematical Society</i>. American Mathematical Society, 2015. <a href=\"https://doi.org/10.1090/S0002-9947-2014-06192-8\">https://doi.org/10.1090/S0002-9947-2014-06192-8</a>.","apa":"Brooks, C., Martin del Campo Sanchez, A., &#38; Sottile, F. (2015). Galois groups of Schubert problems of lines are at least alternating. <i>Transactions of the American Mathematical Society</i>. American Mathematical Society. <a href=\"https://doi.org/10.1090/S0002-9947-2014-06192-8\">https://doi.org/10.1090/S0002-9947-2014-06192-8</a>","ieee":"C. Brooks, A. Martin del Campo Sanchez, and F. Sottile, “Galois groups of Schubert problems of lines are at least alternating,” <i>Transactions of the American Mathematical Society</i>, vol. 367, no. 6. American Mathematical Society, pp. 4183–4206, 2015.","mla":"Brooks, Christopher, et al. “Galois Groups of Schubert Problems of Lines Are at Least Alternating.” <i>Transactions of the American Mathematical Society</i>, vol. 367, no. 6, American Mathematical Society, 2015, pp. 4183–206, doi:<a href=\"https://doi.org/10.1090/S0002-9947-2014-06192-8\">10.1090/S0002-9947-2014-06192-8</a>.","ista":"Brooks C, Martin del Campo Sanchez A, Sottile F. 2015. Galois groups of Schubert problems of lines are at least alternating. Transactions of the American Mathematical Society. 367(6), 4183–4206.","short":"C. Brooks, A. Martin del Campo Sanchez, F. Sottile, Transactions of the American Mathematical Society 367 (2015) 4183–4206."},"title":"Galois groups of Schubert problems of lines are at least alternating","arxiv":1,"page":"4183 - 4206","type":"journal_article","month":"06","status":"public","external_id":{"arxiv":["1207.4280"]},"date_created":"2018-12-11T11:52:50Z","department":[{"_id":"CaUh"}],"author":[{"full_name":"Brooks, Christopher","first_name":"Christopher","last_name":"Brooks"},{"full_name":"Martin Del Campo Sanchez, Abraham","id":"4CF47F6A-F248-11E8-B48F-1D18A9856A87","last_name":"Martin Del Campo Sanchez","first_name":"Abraham"},{"full_name":"Sottile, Frank","last_name":"Sottile","first_name":"Frank"}],"publication_status":"published","intvolume":"       367","date_published":"2015-06-01T00:00:00Z","publication":"Transactions of the American Mathematical Society","volume":367,"publisher":"American Mathematical Society","main_file_link":[{"url":"http://arxiv.org/abs/1207.4280","open_access":"1"}],"abstract":[{"text":"We show that the Galois group of any Schubert problem involving lines in projective space contains the alternating group. This constitutes the largest family of enumerative problems whose Galois groups have been largely determined. Using a criterion of Vakil and a special position argument due to Schubert, our result follows from a particular inequality among Kostka numbers of two-rowed tableaux. In most cases, a combinatorial injection proves the inequality. For the remaining cases, we use the Weyl integral formulas to obtain an integral formula for these Kostka numbers. This rewrites the inequality as an integral, which we estimate to establish the inequality.","lang":"eng"}],"language":[{"iso":"eng"}],"article_processing_charge":"No","quality_controlled":"1","doi":"10.1090/S0002-9947-2014-06192-8","publist_id":"5592","year":"2015","oa_version":"Preprint"},{"isi":1,"title":"Knock-down of synapsin alters cell excitability and action potential waveform by potentiating BK and voltage gated Ca2 currents in Helix serotonergic neurons","oa":1,"citation":{"ista":"Brenes O, Vandael DH, Carbone E, Montarolo P, Ghirardi M. 2015. Knock-down of synapsin alters cell excitability and action potential waveform by potentiating BK and voltage gated Ca2 currents in Helix serotonergic neurons. Neuroscience. 311, 430–443.","short":"O. Brenes, D.H. Vandael, E. Carbone, P. Montarolo, M. Ghirardi, Neuroscience 311 (2015) 430–443.","ieee":"O. Brenes, D. H. Vandael, E. Carbone, P. Montarolo, and M. Ghirardi, “Knock-down of synapsin alters cell excitability and action potential waveform by potentiating BK and voltage gated Ca2 currents in Helix serotonergic neurons,” <i>Neuroscience</i>, vol. 311. Elsevier, pp. 430–443, 2015.","mla":"Brenes, Oscar, et al. “Knock-down of Synapsin Alters Cell Excitability and Action Potential Waveform by Potentiating BK and Voltage Gated Ca2 Currents in Helix Serotonergic Neurons.” <i>Neuroscience</i>, vol. 311, Elsevier, 2015, pp. 430–43, doi:<a href=\"https://doi.org/10.1016/j.neuroscience.2015.10.046\">10.1016/j.neuroscience.2015.10.046</a>.","apa":"Brenes, O., Vandael, D. H., Carbone, E., Montarolo, P., &#38; Ghirardi, M. (2015). Knock-down of synapsin alters cell excitability and action potential waveform by potentiating BK and voltage gated Ca2 currents in Helix serotonergic neurons. <i>Neuroscience</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuroscience.2015.10.046\">https://doi.org/10.1016/j.neuroscience.2015.10.046</a>","ama":"Brenes O, Vandael DH, Carbone E, Montarolo P, Ghirardi M. Knock-down of synapsin alters cell excitability and action potential waveform by potentiating BK and voltage gated Ca2 currents in Helix serotonergic neurons. <i>Neuroscience</i>. 2015;311:430-443. doi:<a href=\"https://doi.org/10.1016/j.neuroscience.2015.10.046\">10.1016/j.neuroscience.2015.10.046</a>","chicago":"Brenes, Oscar, David H Vandael, Emilio Carbone, Pier Montarolo, and Mirella Ghirardi. “Knock-down of Synapsin Alters Cell Excitability and Action Potential Waveform by Potentiating BK and Voltage Gated Ca2 Currents in Helix Serotonergic Neurons.” <i>Neuroscience</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.neuroscience.2015.10.046\">https://doi.org/10.1016/j.neuroscience.2015.10.046</a>."},"date_updated":"2025-09-23T09:25:46Z","scopus_import":"1","file_date_updated":"2020-07-14T12:45:02Z","_id":"1580","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"17","publication_status":"published","author":[{"last_name":"Brenes","first_name":"Oscar","full_name":"Brenes, Oscar"},{"last_name":"Vandael","first_name":"David H","orcid":"0000-0001-7577-1676","id":"3AE48E0A-F248-11E8-B48F-1D18A9856A87","full_name":"Vandael, David H"},{"first_name":"Emilio","last_name":"Carbone","full_name":"Carbone, Emilio"},{"full_name":"Montarolo, Pier","last_name":"Montarolo","first_name":"Pier"},{"last_name":"Ghirardi","first_name":"Mirella","full_name":"Ghirardi, Mirella"}],"department":[{"_id":"PeJo"}],"date_created":"2018-12-11T11:52:50Z","external_id":{"isi":["000366144000037"]},"tmp":{"short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"status":"public","month":"12","type":"journal_article","page":"430 - 443","file":[{"creator":"dernst","content_type":"application/pdf","file_size":5563015,"checksum":"af2c4c994718c7be417eba0dc746aac9","file_id":"7849","date_updated":"2020-07-14T12:45:02Z","date_created":"2020-05-15T06:50:20Z","file_name":"2015_Neuroscience_Brenes.pdf","relation":"main_file","access_level":"open_access"}],"article_processing_charge":"No","language":[{"iso":"eng"}],"abstract":[{"text":"Synapsins (Syns) are an evolutionarily conserved family of presynaptic proteins crucial for the fine-tuning of synaptic function. A large amount of experimental evidences has shown that Syns are involved in the development of epileptic phenotypes and several mutations in Syn genes have been associated with epilepsy in humans and animal models. Syn mutations induce alterations in circuitry and neurotransmitter release, differentially affecting excitatory and inhibitory synapses, thus causing an excitation/inhibition imbalance in network excitability toward hyperexcitability that may be a determinant with regard to the development of epilepsy. Another approach to investigate epileptogenic mechanisms is to understand how silencing Syn affects the cellular behavior of single neurons and is associated with the hyperexcitable phenotypes observed in epilepsy. Here, we examined the functional effects of antisense-RNA inhibition of Syn expression on individually identified and isolated serotonergic cells of the Helix land snail. We found that Helix synapsin silencing increases cell excitability characterized by a slightly depolarized resting membrane potential, decreases the rheobase, reduces the threshold for action potential (AP) firing and increases the mean and instantaneous firing rates, with respect to control cells. The observed increase of Ca2+ and BK currents in Syn-silenced cells seems to be related to changes in the shape of the AP waveform. These currents sustain the faster spiking in Syn-deficient cells by increasing the after hyperpolarization and limiting the Na+ and Ca2+ channel inactivation during repetitive firing. This in turn speeds up the depolarization phase by reaching the AP threshold faster. Our results provide evidence that Syn silencing increases intrinsic cell excitability associated with increased Ca2+ and Ca2+-dependent BK currents in the absence of excitatory or inhibitory inputs.","lang":"eng"}],"publisher":"Elsevier","volume":311,"publication":"Neuroscience","date_published":"2015-12-17T00:00:00Z","intvolume":"       311","oa_version":"Submitted Version","ddc":["570"],"article_type":"original","year":"2015","publist_id":"5591","doi":"10.1016/j.neuroscience.2015.10.046","quality_controlled":"1","has_accepted_license":"1"},{"abstract":[{"lang":"eng","text":"In animal embryos, morphogen gradients determine tissue patterning and morphogenesis. Shyer et al. provide evidence that, during vertebrate gut formation, tissue folding generates graded activity of signals required for subsequent steps of gut growth and differentiation, thereby revealing an intriguing link between tissue morphogenesis and morphogen gradient formation."}],"publisher":"Cell Press","language":[{"iso":"eng"}],"article_processing_charge":"No","date_published":"2015-04-23T00:00:00Z","publication":"Cell","volume":161,"intvolume":"       161","year":"2015","publist_id":"5590","oa_version":"None","quality_controlled":"1","doi":"10.1016/j.cell.2015.04.009","citation":{"short":"M.T. Bollenbach, C.-P.J. Heisenberg, Cell 161 (2015) 431–432.","ista":"Bollenbach MT, Heisenberg C-PJ. 2015. Gradients are shaping up. Cell. 161(3), 431–432.","ieee":"M. T. Bollenbach and C.-P. J. Heisenberg, “Gradients are shaping up,” <i>Cell</i>, vol. 161, no. 3. Cell Press, pp. 431–432, 2015.","mla":"Bollenbach, Mark Tobias, and Carl-Philipp J. Heisenberg. “Gradients Are Shaping Up.” <i>Cell</i>, vol. 161, no. 3, Cell Press, 2015, pp. 431–32, doi:<a href=\"https://doi.org/10.1016/j.cell.2015.04.009\">10.1016/j.cell.2015.04.009</a>.","apa":"Bollenbach, M. T., &#38; Heisenberg, C.-P. J. (2015). Gradients are shaping up. <i>Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cell.2015.04.009\">https://doi.org/10.1016/j.cell.2015.04.009</a>","chicago":"Bollenbach, Mark Tobias, and Carl-Philipp J Heisenberg. “Gradients Are Shaping Up.” <i>Cell</i>. Cell Press, 2015. <a href=\"https://doi.org/10.1016/j.cell.2015.04.009\">https://doi.org/10.1016/j.cell.2015.04.009</a>.","ama":"Bollenbach MT, Heisenberg C-PJ. Gradients are shaping up. <i>Cell</i>. 2015;161(3):431-432. doi:<a href=\"https://doi.org/10.1016/j.cell.2015.04.009\">10.1016/j.cell.2015.04.009</a>"},"date_updated":"2025-09-23T09:10:31Z","corr_author":"1","isi":1,"title":"Gradients are shaping up","issue":"3","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"23","scopus_import":"1","_id":"1581","department":[{"_id":"ToBo"},{"_id":"CaHe"}],"external_id":{"isi":["000353553600003"]},"date_created":"2018-12-11T11:52:50Z","publication_status":"published","author":[{"full_name":"Bollenbach, Mark Tobias","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4398-476X","first_name":"Mark Tobias","last_name":"Bollenbach"},{"full_name":"Heisenberg, Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J","orcid":"0000-0002-0912-4566","last_name":"Heisenberg"}],"page":"431 - 432","month":"04","type":"journal_article","status":"public"},{"doi":"10.1016/j.comgeo.2014.08.006","quality_controlled":"1","has_accepted_license":"1","year":"2015","publist_id":"5589","ddc":["000"],"oa_version":"Published Version","volume":48,"date_published":"2015-02-01T00:00:00Z","publication":"Computational Geometry: Theory and Applications","intvolume":"        48","pubrep_id":"474","abstract":[{"lang":"eng","text":"We investigate weighted straight skeletons from a geometric, graph-theoretical, and combinatorial point of view. We start with a thorough definition and shed light on some ambiguity issues in the procedural definition. We investigate the geometry, combinatorics, and topology of faces and the roof model, and we discuss in which cases a weighted straight skeleton is connected. Finally, we show that the weighted straight skeleton of even a simple polygon may be non-planar and may contain cycles, and we discuss under which restrictions on the weights and/or the input polygon the weighted straight skeleton still behaves similar to its unweighted counterpart. In particular, we obtain a non-procedural description and a linear-time construction algorithm for the straight skeleton of strictly convex polygons with arbitrary weights."}],"publisher":"Elsevier","article_processing_charge":"No","language":[{"iso":"eng"}],"type":"journal_article","month":"02","page":"120 - 133","file":[{"file_size":505987,"content_type":"application/pdf","checksum":"c1ef67f6ec925e12f73a96b8fe285ab4","file_id":"5215","creator":"system","file_name":"IST-2016-474-v1+1_1-s2.0-S0925772114000807-main.pdf","date_created":"2018-12-12T10:16:28Z","date_updated":"2020-07-14T12:45:02Z","access_level":"open_access","relation":"main_file"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"status":"public","department":[{"_id":"HeEd"}],"external_id":{"isi":["000345056700007"]},"date_created":"2018-12-11T11:52:51Z","publication_status":"published","related_material":{"record":[{"status":"public","id":"1584","relation":"other"}]},"author":[{"last_name":"Biedl","first_name":"Therese","full_name":"Biedl, Therese"},{"last_name":"Held","first_name":"Martin","full_name":"Held, Martin"},{"full_name":"Huber, Stefan","first_name":"Stefan","orcid":"0000-0002-8871-5814","last_name":"Huber","id":"4700A070-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Kaaser, Dominik","first_name":"Dominik","last_name":"Kaaser"},{"last_name":"Palfrader","first_name":"Peter","full_name":"Palfrader, Peter"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","issue":"2","day":"01","file_date_updated":"2020-07-14T12:45:02Z","scopus_import":"1","_id":"1582","citation":{"ama":"Biedl T, Held M, Huber S, Kaaser D, Palfrader P. Weighted straight skeletons in the plane. <i>Computational Geometry: Theory and Applications</i>. 2015;48(2):120-133. doi:<a href=\"https://doi.org/10.1016/j.comgeo.2014.08.006\">10.1016/j.comgeo.2014.08.006</a>","chicago":"Biedl, Therese, Martin Held, Stefan Huber, Dominik Kaaser, and Peter Palfrader. “Weighted Straight Skeletons in the Plane.” <i>Computational Geometry: Theory and Applications</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.comgeo.2014.08.006\">https://doi.org/10.1016/j.comgeo.2014.08.006</a>.","apa":"Biedl, T., Held, M., Huber, S., Kaaser, D., &#38; Palfrader, P. (2015). Weighted straight skeletons in the plane. <i>Computational Geometry: Theory and Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.comgeo.2014.08.006\">https://doi.org/10.1016/j.comgeo.2014.08.006</a>","mla":"Biedl, Therese, et al. “Weighted Straight Skeletons in the Plane.” <i>Computational Geometry: Theory and Applications</i>, vol. 48, no. 2, Elsevier, 2015, pp. 120–33, doi:<a href=\"https://doi.org/10.1016/j.comgeo.2014.08.006\">10.1016/j.comgeo.2014.08.006</a>.","ieee":"T. Biedl, M. Held, S. Huber, D. Kaaser, and P. Palfrader, “Weighted straight skeletons in the plane,” <i>Computational Geometry: Theory and Applications</i>, vol. 48, no. 2. Elsevier, pp. 120–133, 2015.","short":"T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Computational Geometry: Theory and Applications 48 (2015) 120–133.","ista":"Biedl T, Held M, Huber S, Kaaser D, Palfrader P. 2015. Weighted straight skeletons in the plane. Computational Geometry: Theory and Applications. 48(2), 120–133."},"oa":1,"date_updated":"2025-09-29T11:06:26Z","isi":1,"title":"Weighted straight skeletons in the plane"},{"type":"journal_article","month":"02","file":[{"file_size":270137,"content_type":"application/pdf","file_id":"5367","checksum":"2779a648610c9b5c86d0b51a62816d23","creator":"system","file_name":"IST-2016-473-v1+1_1-s2.0-S0020019014001987-main.pdf","date_created":"2018-12-12T10:18:45Z","date_updated":"2020-07-14T12:45:03Z","access_level":"open_access","relation":"main_file"}],"page":"243 - 247","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"status":"public","external_id":{"isi":["000346225300034"]},"date_created":"2018-12-11T11:52:51Z","department":[{"_id":"HeEd"}],"author":[{"first_name":"Therese","last_name":"Biedl","full_name":"Biedl, Therese"},{"full_name":"Held, Martin","first_name":"Martin","last_name":"Held"},{"last_name":"Huber","orcid":"0000-0002-8871-5814","first_name":"Stefan","id":"4700A070-F248-11E8-B48F-1D18A9856A87","full_name":"Huber, Stefan"},{"last_name":"Kaaser","first_name":"Dominik","full_name":"Kaaser, Dominik"},{"full_name":"Palfrader, Peter","last_name":"Palfrader","first_name":"Peter"}],"publication_status":"published","day":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","issue":"2","_id":"1583","scopus_import":"1","file_date_updated":"2020-07-14T12:45:03Z","date_updated":"2025-09-22T14:35:14Z","citation":{"mla":"Biedl, Therese, et al. “A Simple Algorithm for Computing Positively Weighted Straight Skeletons of Monotone Polygons.” <i>Information Processing Letters</i>, vol. 115, no. 2, Elsevier, 2015, pp. 243–47, doi:<a href=\"https://doi.org/10.1016/j.ipl.2014.09.021\">10.1016/j.ipl.2014.09.021</a>.","ieee":"T. Biedl, M. Held, S. Huber, D. Kaaser, and P. Palfrader, “A simple algorithm for computing positively weighted straight skeletons of monotone polygons,” <i>Information Processing Letters</i>, vol. 115, no. 2. Elsevier, pp. 243–247, 2015.","ista":"Biedl T, Held M, Huber S, Kaaser D, Palfrader P. 2015. A simple algorithm for computing positively weighted straight skeletons of monotone polygons. Information Processing Letters. 115(2), 243–247.","short":"T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Information Processing Letters 115 (2015) 243–247.","ama":"Biedl T, Held M, Huber S, Kaaser D, Palfrader P. A simple algorithm for computing positively weighted straight skeletons of monotone polygons. <i>Information Processing Letters</i>. 2015;115(2):243-247. doi:<a href=\"https://doi.org/10.1016/j.ipl.2014.09.021\">10.1016/j.ipl.2014.09.021</a>","chicago":"Biedl, Therese, Martin Held, Stefan Huber, Dominik Kaaser, and Peter Palfrader. “A Simple Algorithm for Computing Positively Weighted Straight Skeletons of Monotone Polygons.” <i>Information Processing Letters</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.ipl.2014.09.021\">https://doi.org/10.1016/j.ipl.2014.09.021</a>.","apa":"Biedl, T., Held, M., Huber, S., Kaaser, D., &#38; Palfrader, P. (2015). A simple algorithm for computing positively weighted straight skeletons of monotone polygons. <i>Information Processing Letters</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ipl.2014.09.021\">https://doi.org/10.1016/j.ipl.2014.09.021</a>"},"oa":1,"title":"A simple algorithm for computing positively weighted straight skeletons of monotone polygons","isi":1,"has_accepted_license":"1","doi":"10.1016/j.ipl.2014.09.021","quality_controlled":"1","publist_id":"5588","year":"2015","ddc":["000"],"oa_version":"Published Version","intvolume":"       115","volume":115,"date_published":"2015-02-01T00:00:00Z","publication":"Information Processing Letters","pubrep_id":"473","publisher":"Elsevier","abstract":[{"text":"We study the characteristics of straight skeletons of monotone polygonal chains and use them to devise an algorithm for computing positively weighted straight skeletons of monotone polygons. Our algorithm runs in O(nlogn) time and O(n) space, where n denotes the number of vertices of the polygon.","lang":"eng"}],"article_processing_charge":"No","language":[{"iso":"eng"}]},{"status":"public","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png"},"file":[{"date_updated":"2020-07-14T12:45:03Z","date_created":"2018-12-12T10:17:36Z","file_name":"IST-2016-475-v1+1_1-s2.0-S092577211500005X-main.pdf","relation":"main_file","access_level":"open_access","content_type":"application/pdf","file_size":508379,"file_id":"5292","checksum":"5b33719a86f7f4c8e5dc62c1b6893f49","creator":"system"}],"page":"429 - 442","month":"07","type":"journal_article","author":[{"first_name":"Therese","last_name":"Biedl","full_name":"Biedl, Therese"},{"first_name":"Martin","last_name":"Held","full_name":"Held, Martin"},{"orcid":"0000-0002-8871-5814","first_name":"Stefan","last_name":"Huber","id":"4700A070-F248-11E8-B48F-1D18A9856A87","full_name":"Huber, Stefan"},{"full_name":"Kaaser, Dominik","first_name":"Dominik","last_name":"Kaaser"},{"last_name":"Palfrader","first_name":"Peter","full_name":"Palfrader, Peter"}],"related_material":{"record":[{"id":"1582","status":"public","relation":"other"}]},"publication_status":"published","external_id":{"isi":["000351967400008"]},"date_created":"2018-12-11T11:52:51Z","department":[{"_id":"HeEd"}],"_id":"1584","file_date_updated":"2020-07-14T12:45:03Z","scopus_import":"1","day":"01","issue":"5","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Reprint of: Weighted straight skeletons in the plane","isi":1,"date_updated":"2025-09-29T11:06:25Z","citation":{"ista":"Biedl T, Held M, Huber S, Kaaser D, Palfrader P. 2015. Reprint of: Weighted straight skeletons in the plane. Computational Geometry: Theory and Applications. 48(5), 429–442.","short":"T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Computational Geometry: Theory and Applications 48 (2015) 429–442.","ieee":"T. Biedl, M. Held, S. Huber, D. Kaaser, and P. Palfrader, “Reprint of: Weighted straight skeletons in the plane,” <i>Computational Geometry: Theory and Applications</i>, vol. 48, no. 5. Elsevier, pp. 429–442, 2015.","mla":"Biedl, Therese, et al. “Reprint of: Weighted Straight Skeletons in the Plane.” <i>Computational Geometry: Theory and Applications</i>, vol. 48, no. 5, Elsevier, 2015, pp. 429–42, doi:<a href=\"https://doi.org/10.1016/j.comgeo.2015.01.004\">10.1016/j.comgeo.2015.01.004</a>.","apa":"Biedl, T., Held, M., Huber, S., Kaaser, D., &#38; Palfrader, P. (2015). Reprint of: Weighted straight skeletons in the plane. <i>Computational Geometry: Theory and Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.comgeo.2015.01.004\">https://doi.org/10.1016/j.comgeo.2015.01.004</a>","ama":"Biedl T, Held M, Huber S, Kaaser D, Palfrader P. Reprint of: Weighted straight skeletons in the plane. <i>Computational Geometry: Theory and Applications</i>. 2015;48(5):429-442. doi:<a href=\"https://doi.org/10.1016/j.comgeo.2015.01.004\">10.1016/j.comgeo.2015.01.004</a>","chicago":"Biedl, Therese, Martin Held, Stefan Huber, Dominik Kaaser, and Peter Palfrader. “Reprint of: Weighted Straight Skeletons in the Plane.” <i>Computational Geometry: Theory and Applications</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.comgeo.2015.01.004\">https://doi.org/10.1016/j.comgeo.2015.01.004</a>."},"oa":1,"has_accepted_license":"1","quality_controlled":"1","doi":"10.1016/j.comgeo.2015.01.004","ddc":["000"],"oa_version":"Published Version","publist_id":"5587","year":"2015","pubrep_id":"475","intvolume":"        48","publication":"Computational Geometry: Theory and Applications","date_published":"2015-07-01T00:00:00Z","volume":48,"language":[{"iso":"eng"}],"article_processing_charge":"No","publisher":"Elsevier","abstract":[{"text":"We investigate weighted straight skeletons from a geometric, graph-theoretical, and combinatorial point of view. We start with a thorough definition and shed light on some ambiguity issues in the procedural definition. We investigate the geometry, combinatorics, and topology of faces and the roof model, and we discuss in which cases a weighted straight skeleton is connected. Finally, we show that the weighted straight skeleton of even a simple polygon may be non-planar and may contain cycles, and we discuss under which restrictions on the weights and/or the input polygon the weighted straight skeleton still behaves similar to its unweighted counterpart. In particular, we obtain a non-procedural description and a linear-time construction algorithm for the straight skeleton of strictly convex polygons with arbitrary weights.","lang":"eng"}]},{"doi":"10.1109/TIT.2015.2421894","quality_controlled":"1","publist_id":"5586","year":"2015","oa_version":"None","intvolume":"        61","volume":61,"publication":"IEEE Transactions on Information Theory","date_published":"2015-06-01T00:00:00Z","publisher":"IEEE","abstract":[{"text":"In this paper, we consider the fluctuation of mutual information statistics of a multiple input multiple output channel communication systems without assuming that the entries of the channel matrix have zero pseudovariance. To this end, we also establish a central limit theorem of the linear spectral statistics for sample covariance matrices under general moment conditions by removing the restrictions imposed on the second moment and fourth moment on the matrix entries in Bai and Silverstein (2004).","lang":"eng"}],"article_processing_charge":"No","language":[{"iso":"eng"}],"month":"06","type":"journal_article","page":"3413 - 3426","status":"public","date_created":"2018-12-11T11:52:52Z","external_id":{"isi":["000354943600029"]},"department":[{"_id":"LaEr"}],"author":[{"full_name":"Bao, Zhigang","orcid":"0000-0003-3036-1475","first_name":"Zhigang","last_name":"Bao","id":"442E6A6C-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Pan","first_name":"Guangming","full_name":"Pan, Guangming"},{"last_name":"Zhou","first_name":"Wang","full_name":"Zhou, Wang"}],"publication_status":"published","day":"01","acknowledgement":"G. Pan was supported by MOE Tier 2 under Grant 2014-T2-2-060 and in part by Tier 1 under Grant RG25/14 through the Nanyang Technological University, Singapore. W. Zhou was supported by the National University of Singapore, Singapore, under Grant R-155-000-131-112.\r\n","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","issue":"6","_id":"1585","scopus_import":"1","date_updated":"2025-09-23T07:57:31Z","citation":{"ieee":"Z. Bao, G. Pan, and W. Zhou, “Asymptotic mutual information statistics of MIMO channels and CLT of sample covariance matrices,” <i>IEEE Transactions on Information Theory</i>, vol. 61, no. 6. IEEE, pp. 3413–3426, 2015.","mla":"Bao, Zhigang, et al. “Asymptotic Mutual Information Statistics of MIMO Channels and CLT of Sample Covariance Matrices.” <i>IEEE Transactions on Information Theory</i>, vol. 61, no. 6, IEEE, 2015, pp. 3413–26, doi:<a href=\"https://doi.org/10.1109/TIT.2015.2421894\">10.1109/TIT.2015.2421894</a>.","short":"Z. Bao, G. Pan, W. Zhou, IEEE Transactions on Information Theory 61 (2015) 3413–3426.","ista":"Bao Z, Pan G, Zhou W. 2015. Asymptotic mutual information statistics of MIMO channels and CLT of sample covariance matrices. IEEE Transactions on Information Theory. 61(6), 3413–3426.","chicago":"Bao, Zhigang, Guangming Pan, and Wang Zhou. “Asymptotic Mutual Information Statistics of MIMO Channels and CLT of Sample Covariance Matrices.” <i>IEEE Transactions on Information Theory</i>. IEEE, 2015. <a href=\"https://doi.org/10.1109/TIT.2015.2421894\">https://doi.org/10.1109/TIT.2015.2421894</a>.","ama":"Bao Z, Pan G, Zhou W. Asymptotic mutual information statistics of MIMO channels and CLT of sample covariance matrices. <i>IEEE Transactions on Information Theory</i>. 2015;61(6):3413-3426. doi:<a href=\"https://doi.org/10.1109/TIT.2015.2421894\">10.1109/TIT.2015.2421894</a>","apa":"Bao, Z., Pan, G., &#38; Zhou, W. (2015). Asymptotic mutual information statistics of MIMO channels and CLT of sample covariance matrices. <i>IEEE Transactions on Information Theory</i>. IEEE. <a href=\"https://doi.org/10.1109/TIT.2015.2421894\">https://doi.org/10.1109/TIT.2015.2421894</a>"},"title":"Asymptotic mutual information statistics of MIMO channels and CLT of sample covariance matrices","isi":1},{"external_id":{"isi":["000355709700007"]},"date_created":"2018-12-11T11:52:52Z","department":[{"_id":"ToBo"}],"author":[{"last_name":"Angermayr","first_name":"Andreas","orcid":"0000-0001-8619-2223","id":"4677C796-F248-11E8-B48F-1D18A9856A87","full_name":"Angermayr, Andreas"},{"first_name":"Aleix","last_name":"Gorchs","full_name":"Gorchs, Aleix"},{"full_name":"Hellingwerf, Klaas","first_name":"Klaas","last_name":"Hellingwerf"}],"publication_status":"published","page":"352 - 361","type":"journal_article","month":"06","status":"public","date_updated":"2025-09-23T09:33:34Z","citation":{"short":"A. Angermayr, A. Gorchs, K. Hellingwerf, Trends in Biotechnology 33 (2015) 352–361.","ista":"Angermayr A, Gorchs A, Hellingwerf K. 2015. Metabolic engineering of cyanobacteria for the synthesis of commodity products. Trends in Biotechnology. 33(6), 352–361.","ieee":"A. Angermayr, A. Gorchs, and K. Hellingwerf, “Metabolic engineering of cyanobacteria for the synthesis of commodity products,” <i>Trends in Biotechnology</i>, vol. 33, no. 6. Elsevier, pp. 352–361, 2015.","mla":"Angermayr, Andreas, et al. “Metabolic Engineering of Cyanobacteria for the Synthesis of Commodity Products.” <i>Trends in Biotechnology</i>, vol. 33, no. 6, Elsevier, 2015, pp. 352–61, doi:<a href=\"https://doi.org/10.1016/j.tibtech.2015.03.009\">10.1016/j.tibtech.2015.03.009</a>.","apa":"Angermayr, A., Gorchs, A., &#38; Hellingwerf, K. (2015). Metabolic engineering of cyanobacteria for the synthesis of commodity products. <i>Trends in Biotechnology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tibtech.2015.03.009\">https://doi.org/10.1016/j.tibtech.2015.03.009</a>","chicago":"Angermayr, Andreas, Aleix Gorchs, and Klaas Hellingwerf. “Metabolic Engineering of Cyanobacteria for the Synthesis of Commodity Products.” <i>Trends in Biotechnology</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.tibtech.2015.03.009\">https://doi.org/10.1016/j.tibtech.2015.03.009</a>.","ama":"Angermayr A, Gorchs A, Hellingwerf K. Metabolic engineering of cyanobacteria for the synthesis of commodity products. <i>Trends in Biotechnology</i>. 2015;33(6):352-361. doi:<a href=\"https://doi.org/10.1016/j.tibtech.2015.03.009\">10.1016/j.tibtech.2015.03.009</a>"},"title":"Metabolic engineering of cyanobacteria for the synthesis of commodity products","isi":1,"day":"01","issue":"6","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1586","scopus_import":"1","publist_id":"5585","year":"2015","oa_version":"None","quality_controlled":"1","doi":"10.1016/j.tibtech.2015.03.009","publisher":"Elsevier","abstract":[{"text":"Through metabolic engineering cyanobacteria can be employed in biotechnology. Combining the capacity for oxygenic photosynthesis and carbon fixation with an engineered metabolic pathway allows carbon-based product formation from CO2, light, and water directly. Such cyanobacterial 'cell factories' are constructed to produce biofuels, bioplastics, and commodity chemicals. Efforts of metabolic engineers and synthetic biologists allow the modification of the intermediary metabolism at various branching points, expanding the product range. The new biosynthesis routes 'tap' the metabolism ever more efficiently, particularly through the engineering of driving forces and utilization of cofactors generated during the light reactions of photosynthesis, resulting in higher product titers. High rates of carbon rechanneling ultimately allow an almost-complete allocation of fixed carbon to product above biomass.","lang":"eng"}],"language":[{"iso":"eng"}],"article_processing_charge":"No","intvolume":"        33","publication":"Trends in Biotechnology","date_published":"2015-06-01T00:00:00Z","volume":33},{"date_updated":"2025-09-23T10:30:45Z","oa":1,"citation":{"ama":"Amaro P, Fratini F, Safari L, et al. Quantum interference shifts in laser spectroscopy with elliptical polarization. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2015;92(6). doi:<a href=\"https://doi.org/10.1103/PhysRevA.92.062506\">10.1103/PhysRevA.92.062506</a>","chicago":"Amaro, Pedro, Filippo Fratini, Laleh Safari, Aldo Antognini, Paul Indelicato, Randolf Pohl, and José Santos. “Quantum Interference Shifts in Laser Spectroscopy with Elliptical Polarization.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2015. <a href=\"https://doi.org/10.1103/PhysRevA.92.062506\">https://doi.org/10.1103/PhysRevA.92.062506</a>.","apa":"Amaro, P., Fratini, F., Safari, L., Antognini, A., Indelicato, P., Pohl, R., &#38; Santos, J. (2015). Quantum interference shifts in laser spectroscopy with elliptical polarization. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.92.062506\">https://doi.org/10.1103/PhysRevA.92.062506</a>","ieee":"P. Amaro <i>et al.</i>, “Quantum interference shifts in laser spectroscopy with elliptical polarization,” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 92, no. 6. American Physical Society, 2015.","mla":"Amaro, Pedro, et al. “Quantum Interference Shifts in Laser Spectroscopy with Elliptical Polarization.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 92, no. 6, 062506, American Physical Society, 2015, doi:<a href=\"https://doi.org/10.1103/PhysRevA.92.062506\">10.1103/PhysRevA.92.062506</a>.","ista":"Amaro P, Fratini F, Safari L, Antognini A, Indelicato P, Pohl R, Santos J. 2015. Quantum interference shifts in laser spectroscopy with elliptical polarization. Physical Review A - Atomic, Molecular, and Optical Physics. 92(6), 062506.","short":"P. Amaro, F. Fratini, L. Safari, A. Antognini, P. Indelicato, R. Pohl, J. Santos, Physical Review A - Atomic, Molecular, and Optical Physics 92 (2015)."},"project":[{"grant_number":"291734","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"title":"Quantum interference shifts in laser spectroscopy with elliptical polarization","isi":1,"arxiv":1,"article_number":"062506","day":"31","issue":"6","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1587","scopus_import":"1","external_id":{"arxiv":["1511.03585"],"isi":["000367373900002"]},"date_created":"2018-12-11T11:52:53Z","department":[{"_id":"MiLe"}],"author":[{"full_name":"Amaro, Pedro","first_name":"Pedro","last_name":"Amaro"},{"first_name":"Filippo","last_name":"Fratini","full_name":"Fratini, Filippo"},{"full_name":"Safari, Laleh","first_name":"Laleh","last_name":"Safari","id":"3C325E5E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Antognini","first_name":"Aldo","full_name":"Antognini, Aldo"},{"first_name":"Paul","last_name":"Indelicato","full_name":"Indelicato, Paul"},{"full_name":"Pohl, Randolf","last_name":"Pohl","first_name":"Randolf"},{"last_name":"Santos","first_name":"José","full_name":"Santos, José"}],"publication_status":"published","month":"12","type":"journal_article","status":"public","publisher":"American Physical Society","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1511.03585"}],"abstract":[{"lang":"eng","text":"We investigate the quantum interference shifts between energetically close states, where the state structure is observed by laser spectroscopy. We report a compact and analytical expression that models the quantum interference induced shift for any admixture of circular polarization of the incident laser and angle of observation. An experimental scenario free of quantum interference can thus be predicted with this formula. Although this study is exemplified here for muonic deuterium, it can be applied to any other laser spectroscopy measurement of ns-n′p frequencies of a nonrelativistic atomic system, via an ns→n′p→n′′s scheme."}],"language":[{"iso":"eng"}],"article_processing_charge":"No","intvolume":"        92","publication":"Physical Review A - Atomic, Molecular, and Optical Physics","date_published":"2015-12-31T00:00:00Z","volume":92,"ec_funded":1,"publist_id":"5584","year":"2015","article_type":"original","oa_version":"Preprint","quality_controlled":"1","doi":"10.1103/PhysRevA.92.062506"}]