[{"file_date_updated":"2025-01-27T08:46:33Z","has_accepted_license":"1","acknowledgement":"We thank Florian Marr for excellent technical assistance, Christina Altmutter and Julia Flor for technical support, Alois Schlögl for programming, Todor Asenov for development of the transportation box for human brain tissue, Tim Vogels for guidance on simulations, Marcus Huber for mathematical advice, Walter Kaufmann for assistance with handling frozen tissue, and Eleftheria Kralli-Beller for manuscript editing. This research was supported by the Scientific Services Units (SSUs) of ISTA, and we are grateful for assistance from Christoph Sommer and the Imaging and Optics Facility, Preclinical Facility, Lab Support Facility, Miba Machine Shop, and Scientific Computing. We are particularly grateful to the patient donors for their support of this project and also acknowledge the excellent support of the Medical University of Vienna Department of Neurosurgery staff; Romana Hoeftberger and the Division of Neuropathology and Neurochemistry; Gregor Kasprian and the Division of Neuroradiology and Musculoskeletal Radiology; and Christoph Baumgartner, Martha Feucht, and Ekaterina Pataraia for their clinical care of the patients included in this study. We thank Laura Jonkman, the NABCA biobank, and postmortem brain sample donors for their support of this research. The project received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (advanced grant no. 692692 to P.J. and Marie Skłodowska-Curie Actions Individual Fellowship no. 101026635 to J.F.W.), the Austrian Science Fund (FWF; grant PAT 4178023 to P.J. and grant DK W1232 to M.R.T. and J.G.D.), the Austrian Academy of Sciences (DOC fellowship 26137 to M.R.T.), and a NOMIS-ISTA fellowship (to A.N.-O.).","_id":"18879","abstract":[{"lang":"eng","text":"Our brain has remarkable computational power, generating sophisticated behaviors, storing memories over an individual’s lifetime, and producing higher cognitive functions. However, little of our neuroscience knowledge covers the human brain. Is this organ truly unique, or is it a scaled version of the extensively studied rodent brain? Combining multicellular patch-clamp recording with expansion-based superresolution microscopy and full-scale modeling, we determined the cellular and microcircuit properties of the human hippocampal CA3 region, a fundamental circuit for memory storage. In contrast to neocortical networks, human hippocampal CA3 displayed sparse connectivity, providing a circuit architecture that maximizes associational power. Human synapses showed unique reliability, high precision, and long integration times, exhibiting both species- and circuit-specific properties. Together with expanded neuronal numbers, these circuit characteristics greatly enhanced the memory storage capacity of CA3. Our results reveal distinct microcircuit properties of the human hippocampus and begin to unravel the inner workings of our most complex organ. "}],"status":"public","department":[{"_id":"JoDa"},{"_id":"PeJo"},{"_id":"GradSch"}],"date_published":"2025-01-23T00:00:00Z","isi":1,"scopus_import":"1","issue":"2","day":"23","title":"Human hippocampal CA3 uses specific functional connectivity rules for efficient associative memory","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","date_created":"2025-01-26T23:01:49Z","citation":{"mla":"Watson, Jake, et al. “Human Hippocampal CA3 Uses Specific Functional Connectivity Rules for Efficient Associative Memory.” <i>Cell</i>, vol. 188, no. 2, Elsevier, 2025, p. 501–514.e18, doi:<a href=\"https://doi.org/10.1016/j.cell.2024.11.022\">10.1016/j.cell.2024.11.022</a>.","apa":"Watson, J., Vargas Barroso, V. M., Morse, R., Navas Olivé, A. C., Tavakoli, M., Danzl, J. G., … Jonas, P. M. (2025). Human hippocampal CA3 uses specific functional connectivity rules for efficient associative memory. <i>Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cell.2024.11.022\">https://doi.org/10.1016/j.cell.2024.11.022</a>","short":"J. Watson, V.M. Vargas Barroso, R. Morse, A.C. Navas Olivé, M. Tavakoli, J.G. Danzl, M. Tomschik, K. Rössler, P.M. Jonas, Cell 188 (2025) 501–514.e18.","ieee":"J. Watson <i>et al.</i>, “Human hippocampal CA3 uses specific functional connectivity rules for efficient associative memory,” <i>Cell</i>, vol. 188, no. 2. Elsevier, p. 501–514.e18, 2025.","chicago":"Watson, Jake, Victor M Vargas Barroso, Rebecca Morse, Andrea C Navas Olivé, Mojtaba Tavakoli, Johann G Danzl, Matthias Tomschik, Karl Rössler, and Peter M Jonas. “Human Hippocampal CA3 Uses Specific Functional Connectivity Rules for Efficient Associative Memory.” <i>Cell</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.cell.2024.11.022\">https://doi.org/10.1016/j.cell.2024.11.022</a>.","ama":"Watson J, Vargas Barroso VM, Morse R, et al. Human hippocampal CA3 uses specific functional connectivity rules for efficient associative memory. <i>Cell</i>. 2025;188(2):501-514.e18. doi:<a href=\"https://doi.org/10.1016/j.cell.2024.11.022\">10.1016/j.cell.2024.11.022</a>","ista":"Watson J, Vargas Barroso VM, Morse R, Navas Olivé AC, Tavakoli M, Danzl JG, Tomschik M, Rössler K, Jonas PM. 2025. Human hippocampal CA3 uses specific functional connectivity rules for efficient associative memory. Cell. 188(2), 501–514.e18."},"ddc":["570"],"month":"01","publication_status":"published","article_type":"original","intvolume":"       188","acknowledged_ssus":[{"_id":"Bio"},{"_id":"PreCl"},{"_id":"LifeSc"},{"_id":"M-Shop"},{"_id":"ScienComp"}],"OA_type":"hybrid","ec_funded":1,"language":[{"iso":"eng"}],"project":[{"_id":"25B7EB9E-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"692692","name":"Biophysics and circuit function of a giant cortical glutamatergic synapse"},{"name":"Synaptic computations of the hippocampal CA3 circuitry","grant_number":"101026635","call_identifier":"H2020","_id":"fc2be41b-9c52-11eb-aca3-faa90aa144e9"},{"name":"Studying Organelle Structure and Function at Nanoscale Resolution with Expansion Microscopy","grant_number":"26137","_id":"6285a163-2b32-11ec-9570-8e204ca2dba5"},{"call_identifier":"FWF","_id":"2548AE96-B435-11E9-9278-68D0E5697425","grant_number":"W1232","name":"Molecular Drug Targets"},{"name":"Synaptic networks of human brain","grant_number":"PAT 4178023","_id":"8d9195e9-16d5-11f0-9cad-d075be887a1e"},{"_id":"9B861AAC-BA93-11EA-9121-9846C619BF3A","name":"NOMIS Fellowship Program"}],"author":[{"full_name":"Watson, Jake","id":"63836096-4690-11EA-BD4E-32803DDC885E","orcid":"0000-0002-8698-3823","first_name":"Jake","last_name":"Watson"},{"full_name":"Vargas Barroso, Victor M","last_name":"Vargas Barroso","first_name":"Victor M","id":"2F55A9DE-F248-11E8-B48F-1D18A9856A87"},{"id":"ceb89ae7-dc8d-11ea-abe3-da3301d0eab4","last_name":"Morse","first_name":"Rebecca","full_name":"Morse, Rebecca"},{"full_name":"Navas Olivé, Andrea C","id":"739d26c9-52e8-11ee-8d72-f14d3893b4ce","last_name":"Navas Olivé","first_name":"Andrea C","orcid":"0000-0002-9280-8597"},{"full_name":"Tavakoli, Mojtaba","id":"3A0A06F4-F248-11E8-B48F-1D18A9856A87","last_name":"Tavakoli","first_name":"Mojtaba","orcid":"0000-0002-7667-6854"},{"full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G","last_name":"Danzl","orcid":"0000-0001-8559-3973"},{"full_name":"Tomschik, Matthias","first_name":"Matthias","last_name":"Tomschik"},{"last_name":"Rössler","first_name":"Karl","full_name":"Rössler, Karl"},{"full_name":"Jonas, Peter M","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5001-4804","last_name":"Jonas","first_name":"Peter M"}],"publication_identifier":{"eissn":["1097-4172"],"issn":["0092-8674"]},"oa":1,"pmid":1,"article_processing_charge":"Yes (via OA deal)","corr_author":"1","fulldoi":"https://doi.org/10.1016/j.cell.2024.11.022","doi":"10.1016/j.cell.2024.11.022","oa_version":"Published Version","OA_place":"publisher","quality_controlled":"1","date_updated":"2026-04-14T08:34:32Z","publisher":"Elsevier","publication":"Cell","related_material":{"record":[{"status":"public","id":"18688","relation":"earlier_version"}]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"year":"2025","external_id":{"pmid":["39667938"],"isi":["001408395600001"]},"file":[{"file_size":14082343,"success":1,"checksum":"d5a818edc32d249cdf75e1bb5b70a4b7","file_id":"18884","date_updated":"2025-01-27T08:46:33Z","date_created":"2025-01-27T08:46:33Z","content_type":"application/pdf","relation":"main_file","creator":"dernst","access_level":"open_access","file_name":"2025_Cell_Watson.pdf"}],"volume":188,"page":"501-514.e18"},{"article_processing_charge":"No","arxiv":1,"fulldoi":"https://doi.org/10.1142/S201032632450028X","publication_identifier":{"issn":["2010-3263"],"eissn":["2010-3271"]},"oa":1,"doi":"10.1142/S201032632450028X","month":"01","intvolume":"        14","publication_status":"published","article_type":"original","OA_type":"green","author":[{"full_name":"Campbell, Andrew J","first_name":"Andrew J","last_name":"Campbell","id":"582b06a9-1f1c-11ee-b076-82ffce00dde4"},{"first_name":"Kyle","last_name":"Luh","full_name":"Luh, Kyle"},{"full_name":"Margarint, Vlad","last_name":"Margarint","first_name":"Vlad"}],"language":[{"iso":"eng"}],"year":"2025","external_id":{"isi":["001397136000001"],"arxiv":["2301.04722"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2301.04722"}],"volume":14,"oa_version":"Preprint","quality_controlled":"1","date_updated":"2025-07-10T11:51:29Z","OA_place":"repository","publisher":"World Scientific Publishing","publication":"Random Matrices: Theory and Application","article_number":"2450028","status":"public","date_published":"2025-01-01T00:00:00Z","department":[{"_id":"LaEr"}],"abstract":[{"text":"In this paper, we provide a rate of convergence for a version of the Carathéodory convergence for the multiple SLE model with a Dyson Brownian motion driver towards its hydrodynamic limit, for β=1 and β=2. The results are obtained by combining techniques from the field of Schramm–Loewner Evolutions with modern techniques from random matrices. Our approach shows how one can apply modern tools used in the proof of universality in random matrix theory to the field of Schramm–Loewner Evolutions.","lang":"eng"}],"_id":"18880","type":"journal_article","citation":{"chicago":"Campbell, Andrew J, Kyle Luh, and Vlad Margarint. “Rate of Convergence in Multiple SLE Using Random Matrix Theory.” <i>Random Matrices: Theory and Application</i>. World Scientific Publishing, 2025. <a href=\"https://doi.org/10.1142/S201032632450028X\">https://doi.org/10.1142/S201032632450028X</a>.","ama":"Campbell AJ, Luh K, Margarint V. Rate of convergence in multiple SLE using random matrix theory. <i>Random Matrices: Theory and Application</i>. 2025;14(1). doi:<a href=\"https://doi.org/10.1142/S201032632450028X\">10.1142/S201032632450028X</a>","ista":"Campbell AJ, Luh K, Margarint V. 2025. Rate of convergence in multiple SLE using random matrix theory. Random Matrices: Theory and Application. 14(1), 2450028.","mla":"Campbell, Andrew J., et al. “Rate of Convergence in Multiple SLE Using Random Matrix Theory.” <i>Random Matrices: Theory and Application</i>, vol. 14, no. 1, 2450028, World Scientific Publishing, 2025, doi:<a href=\"https://doi.org/10.1142/S201032632450028X\">10.1142/S201032632450028X</a>.","short":"A.J. Campbell, K. Luh, V. Margarint, Random Matrices: Theory and Application 14 (2025).","ieee":"A. J. Campbell, K. Luh, and V. Margarint, “Rate of convergence in multiple SLE using random matrix theory,” <i>Random Matrices: Theory and Application</i>, vol. 14, no. 1. World Scientific Publishing, 2025.","apa":"Campbell, A. J., Luh, K., &#38; Margarint, V. (2025). Rate of convergence in multiple SLE using random matrix theory. <i>Random Matrices: Theory and Application</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/S201032632450028X\">https://doi.org/10.1142/S201032632450028X</a>"},"date_created":"2025-01-26T23:01:49Z","issue":"1","isi":1,"scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","title":"Rate of convergence in multiple SLE using random matrix theory"},{"abstract":[{"lang":"eng","text":"The determination of the intrinsic properties of solid active material candidates is essential for their performance optimization. However, macroscopic electrodes and related analytical techniques show challenges concerning the number of additional influencing parameters. We explore recessed microelectrodes (rME) as a platform that allows for a binder-free investigation of Prussian Blue analogues (PBA), a family of promising battery materials. The enhanced diffusion using microelectrochemical tools is indispensable to assess the intrinsic material performance, overcoming the limitation of cation diffusion from the electrolyte to the solid interface during (dis)charging cycles and allowing the investigation of limiting steps in the coupled ion-electron transfer process. The intrinsic electrochemical performance of PBAs was studied in a three-electrode configuration by means of cyclic voltammetry and galvanostatic (dis)charging in aqueous Na+-containing electrolyte. We extended the evaluation to the role of the electrolyte on the performance of cathodic and anodic processes of a Mn-based PBA. Ex-situ and operando chemical characterization were coupled to support the microelectrochemical results."}],"_id":"18881","has_accepted_license":"1","file_date_updated":"2025-04-16T06:47:09Z","acknowledgement":"The authors acknowledge funding from the European Union's Horizon Europe research and innovation programme – European Innovation Council (EIC) under the grant agreement 101046742 (MeBattery), the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (CasCat [833408]), and the Spanish Government (Ministerio de Ciencia e Innovación, Grants PID2021-124974OB-C22). The authors thank Martin Trautmann (RUB) and Prof. Dr. Daniel Grasseschi (Federal University of Rio de Janeiro – UFRJ) for support concerning ICP-MS and Raman measurements, respectively. Open Access funding enabled and organized by Projekt DEAL.","department":[{"_id":"MaIb"}],"date_published":"2025-03-01T00:00:00Z","status":"public","article_number":"e202400743","title":"Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application","day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","isi":1,"issue":"3","date_created":"2025-01-26T23:01:50Z","citation":{"ista":"Jiyane N, Santana Santos C, Echevarria Poza I, Palacios Corella M, Abdillah Mahbub MA, Marin-Tajadura G, Quast T, Ibáñez M, Ventosa E, Schuhmann W. 2025. Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application. Batteries &#38; Supercaps. 8(3), e202400743.","ama":"Jiyane N, Santana Santos C, Echevarria Poza I, et al. Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application. <i>Batteries &#38; Supercaps</i>. 2025;8(3). doi:<a href=\"https://doi.org/10.1002/batt.202400743\">10.1002/batt.202400743</a>","chicago":"Jiyane, Nomnotho, Carla Santana Santos, Igor Echevarria Poza, Mario Palacios Corella, Muhammad Adib Abdillah Mahbub, Gimena Marin-Tajadura, Thomas Quast, Maria Ibáñez, Edgar Ventosa, and Wolfgang Schuhmann. “Recessed Microelectrodes as a Platform to Investigate the Intrinsic Redox Process of Prussian Blue Analogs for Energy Storage Application.” <i>Batteries &#38; Supercaps</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/batt.202400743\">https://doi.org/10.1002/batt.202400743</a>.","mla":"Jiyane, Nomnotho, et al. “Recessed Microelectrodes as a Platform to Investigate the Intrinsic Redox Process of Prussian Blue Analogs for Energy Storage Application.” <i>Batteries &#38; Supercaps</i>, vol. 8, no. 3, e202400743, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/batt.202400743\">10.1002/batt.202400743</a>.","short":"N. Jiyane, C. Santana Santos, I. Echevarria Poza, M. Palacios Corella, M.A. Abdillah Mahbub, G. Marin-Tajadura, T. Quast, M. Ibáñez, E. Ventosa, W. Schuhmann, Batteries &#38; Supercaps 8 (2025).","apa":"Jiyane, N., Santana Santos, C., Echevarria Poza, I., Palacios Corella, M., Abdillah Mahbub, M. A., Marin-Tajadura, G., … Schuhmann, W. (2025). Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application. <i>Batteries &#38; Supercaps</i>. Wiley. <a href=\"https://doi.org/10.1002/batt.202400743\">https://doi.org/10.1002/batt.202400743</a>","ieee":"N. Jiyane <i>et al.</i>, “Recessed microelectrodes as a platform to investigate the intrinsic redox process of Prussian blue analogs for energy storage application,” <i>Batteries &#38; Supercaps</i>, vol. 8, no. 3. Wiley, 2025."},"type":"journal_article","language":[{"iso":"eng"}],"author":[{"full_name":"Jiyane, Nomnotho","last_name":"Jiyane","first_name":"Nomnotho"},{"full_name":"Santana Santos, Carla","first_name":"Carla","last_name":"Santana Santos"},{"first_name":"Igor","last_name":"Echevarria Poza","id":"fbae1d3b-8142-11ed-8927-a8cf34feb495","full_name":"Echevarria Poza, Igor"},{"id":"452e82c6-803f-11ed-ab7e-ca0439e73a5d","last_name":"Palacios Corella","first_name":"Mario","full_name":"Palacios Corella, Mario"},{"last_name":"Abdillah Mahbub","first_name":"Muhammad Adib","full_name":"Abdillah Mahbub, Muhammad Adib"},{"last_name":"Marin-Tajadura","first_name":"Gimena","full_name":"Marin-Tajadura, Gimena"},{"full_name":"Quast, Thomas","first_name":"Thomas","last_name":"Quast"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843","last_name":"Ibáñez","first_name":"Maria","full_name":"Ibáñez, Maria"},{"last_name":"Ventosa","first_name":"Edgar","full_name":"Ventosa, Edgar"},{"first_name":"Wolfgang","last_name":"Schuhmann","full_name":"Schuhmann, Wolfgang"}],"OA_type":"hybrid","month":"03","ddc":["540"],"intvolume":"         8","article_type":"original","publication_status":"published","doi":"10.1002/batt.202400743","oa":1,"publication_identifier":{"eissn":["2566-6223"]},"fulldoi":"https://doi.org/10.1002/batt.202400743","article_processing_charge":"Yes (via OA deal)","publisher":"Wiley","publication":"Batteries & Supercaps","tmp":{"short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode"},"date_updated":"2026-02-16T12:15:59Z","quality_controlled":"1","OA_place":"publisher","oa_version":"Published Version","file":[{"date_created":"2025-04-16T06:47:09Z","file_name":"2025_Batteries_Jiyane.pdf","access_level":"open_access","creator":"dernst","relation":"main_file","content_type":"application/pdf","checksum":"a9ebdb25c43dc2823cc8a1ba9154d914","file_id":"19568","success":1,"file_size":1251786,"date_updated":"2025-04-16T06:47:09Z"}],"volume":8,"external_id":{"isi":["001402369200001"]},"year":"2025"},{"abstract":[{"lang":"eng","text":"Ternary liquid-like thermoelectric materials have garnered significant attention due to their ultra-low lattice thermal conductivity. Among these, Ag8SnSe6 stands out for its exceptionally low sound velocity and thermal conductivity. However, the inherent poor electrical conductivity and suboptimal thermoelectric properties of Ag8SnSe6 necessitate further improvement. Here, a novel approach is initiated to enhance the thermoelectric properties of Ag8SnSe6 by combining low-dimensionalization with intrinsic doping. For the first time, this work successfully synthesizes single-phase Ag8SnSe6 nanocrystals, ≈10 nm in size, with the correct phase and composition using a robust and reliable colloidal method. This approach represents a significant improvement over previous reports on this material. Reducing the crystal domains of Ag8SnSe6 to the nanoscale induces quantum confinement effects, increasing the density of states near the Fermi surface. It also introduces additional grain boundaries, which lower the lattice thermal conductivity and simplify structural design. Moreover, incorporating small amounts of Sn nanopowder into the Ag8SnSe6 nanocrystals before consolidation further enhances the thermoelectric performance. Sn acts as a donor dopant, increasing the electronic concentration while at the same time improving their mobility by reducing interface barriers, thus significantly improving the material transport properties. Additionally, the presence of Sn leads to the formation of point defects, dislocations, and secondary phases, which increase phonon scattering and further reduce the thermal conductivity. Through this synergistic optimization, the figure of merit  shows a significant increase across a wide temperature range. Overall, a strategy is presented for the controlled preparation of Ag8SnSe6 nanocrystals, the decoupling of their electrical and thermal transport, and the practical application of this material to thermoelectric single-leg modules."}],"_id":"18882","acknowledgement":"X.Z. and M.L. contributed equally to this work. This work was supported by the National Key R&D Program of China (No. 2024YFE0105200). Also supported by the China Postdoctoral Science Foundation under Grant Number 2023M743151. M.J. acknowledges funding from the China Postdoctoral Science Foundation (No. 2023M743221). A.C. thanks the support from the projects ENE2016-77798-C4-3-R and NANOGEN (PID2020-116093RB-C43), funded by MCIN/ AEI/10.13039/501100011033/ and by “ERDF A way of making Europe”, by the “European Union”.","department":[{"_id":"MaIb"},{"_id":"GradSch"}],"date_published":"2025-06-19T00:00:00Z","status":"public","article_number":"2421449","title":"Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance","day":"19","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","isi":1,"issue":"24","citation":{"chicago":"Zhao, Xueke, Mengyao Li, Mochen Jia, Christine Fiedler, Bingfei Nan, Dongwen Yang, Lei Li, et al. “Low-Dimensional Structure Modulation in Ag8SnSe6 for Enhanced Thermoelectric Performance.” <i>Advanced Functional Materials</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/adfm.202421449\">https://doi.org/10.1002/adfm.202421449</a>.","ama":"Zhao X, Li M, Jia M, et al. Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance. <i>Advanced Functional Materials</i>. 2025;35(24). doi:<a href=\"https://doi.org/10.1002/adfm.202421449\">10.1002/adfm.202421449</a>","ista":"Zhao X, Li M, Jia M, Fiedler C, Nan B, Yang D, Li L, Yuan Z, Song H, Liu Y, Ibáñez M, Wang Z, Shan C, Cabot A. 2025. Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance. Advanced Functional Materials. 35(24), 2421449.","short":"X. Zhao, M. Li, M. Jia, C. Fiedler, B. Nan, D. Yang, L. Li, Z. Yuan, H. Song, Y. Liu, M. Ibáñez, Z. Wang, C. Shan, A. Cabot, Advanced Functional Materials 35 (2025).","apa":"Zhao, X., Li, M., Jia, M., Fiedler, C., Nan, B., Yang, D., … Cabot, A. (2025). Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance. <i>Advanced Functional Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adfm.202421449\">https://doi.org/10.1002/adfm.202421449</a>","ieee":"X. Zhao <i>et al.</i>, “Low-dimensional structure modulation in Ag8SnSe6 for enhanced thermoelectric performance,” <i>Advanced Functional Materials</i>, vol. 35, no. 24. Wiley, 2025.","mla":"Zhao, Xueke, et al. “Low-Dimensional Structure Modulation in Ag8SnSe6 for Enhanced Thermoelectric Performance.” <i>Advanced Functional Materials</i>, vol. 35, no. 24, 2421449, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/adfm.202421449\">10.1002/adfm.202421449</a>."},"date_created":"2025-01-26T23:01:50Z","type":"journal_article","language":[{"iso":"eng"}],"author":[{"full_name":"Zhao, Xueke","last_name":"Zhao","first_name":"Xueke"},{"full_name":"Li, Mengyao","first_name":"Mengyao","last_name":"Li"},{"full_name":"Jia, Mochen","last_name":"Jia","first_name":"Mochen"},{"full_name":"Fiedler, Christine","last_name":"Fiedler","first_name":"Christine","id":"bd3fceba-dc74-11ea-a0a7-c17f71817366"},{"last_name":"Nan","first_name":"Bingfei","full_name":"Nan, Bingfei"},{"full_name":"Yang, Dongwen","last_name":"Yang","first_name":"Dongwen"},{"full_name":"Li, Lei","last_name":"Li","first_name":"Lei"},{"first_name":"Zicheng","last_name":"Yuan","full_name":"Yuan, Zicheng"},{"full_name":"Song, Hongzhang","last_name":"Song","first_name":"Hongzhang"},{"full_name":"Liu, Yu","orcid":"0000-0001-7313-6740","first_name":"Yu","last_name":"Liu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Ibáñez","first_name":"Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","full_name":"Ibáñez, Maria"},{"full_name":"Wang, Ziyu","last_name":"Wang","first_name":"Ziyu"},{"last_name":"Shan","first_name":"Chongxin","full_name":"Shan, Chongxin"},{"first_name":"Andreu","last_name":"Cabot","full_name":"Cabot, Andreu"}],"OA_type":"closed access","intvolume":"        35","publication_status":"published","article_type":"original","month":"06","doi":"10.1002/adfm.202421449","publication_identifier":{"issn":["1616-301X"],"eissn":["1616-3028"]},"fulldoi":"https://doi.org/10.1002/adfm.202421449","article_processing_charge":"No","publisher":"Wiley","publication":"Advanced Functional Materials","quality_controlled":"1","date_updated":"2025-12-30T07:17:39Z","oa_version":"None","volume":35,"external_id":{"isi":["001398067000001"]},"year":"2025"},{"year":"2025","volume":16,"file":[{"file_id":"20826","checksum":"06244623bb7611c636652ecbc4787889","success":1,"file_size":805323,"date_updated":"2025-12-15T13:30:33Z","date_created":"2025-12-15T13:30:33Z","file_name":"2025_NatureComm_Dawson.pdf","access_level":"open_access","content_type":"application/pdf","relation":"main_file","creator":"dernst"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2024.02.27.582277"}],"external_id":{"pmid":["41330896"]},"OA_place":"publisher","date_updated":"2026-06-10T08:50:53Z","quality_controlled":"1","oa_version":"Published Version","related_material":{"record":[{"status":"public","id":"20471","relation":"research_data"}],"link":[{"description":"News on ISTA website","relation":"press_release","url":"https://ista.ac.at/en/news/ants-signal-deadly-infection/"}]},"publisher":"Springer Nature","publication":"Nature Communications","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"pmid":1,"PlanS_conform":"1","publication_identifier":{"eissn":["2041-1723"]},"oa":1,"fulldoi":"https://doi.org/10.1038/s41467-025-66175-z","corr_author":"1","article_processing_charge":"Yes","doi":"10.1038/s41467-025-66175-z","APC_amount":"7068 EUR","OA_type":"gold","acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"MassSpec"}],"ddc":["570"],"month":"12","intvolume":"        16","article_type":"original","publication_status":"published","project":[{"name":"Epidemics in ant societies on a chip","grant_number":"771402","call_identifier":"H2020","_id":"2649B4DE-B435-11E9-9278-68D0E5697425"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"language":[{"iso":"eng"}],"ec_funded":1,"author":[{"first_name":"Erika","last_name":"Dawson","id":"31B4E2D0-F248-11E8-B48F-1D18A9856A87","full_name":"Dawson, Erika"},{"full_name":"Hönigsberger, Michaela","id":"953894f3-25bd-11ec-8556-f70a9d38ef60","last_name":"Hönigsberger","first_name":"Michaela"},{"id":"2AC57FAC-F248-11E8-B48F-1D18A9856A87","first_name":"Niklas","last_name":"Kampleitner","full_name":"Kampleitner, Niklas"},{"full_name":"Grasse, Anna V","id":"406F989C-F248-11E8-B48F-1D18A9856A87","last_name":"Grasse","first_name":"Anna V"},{"first_name":"Lukas","last_name":"Lindorfer","id":"85f0e6d3-06b3-11ec-8982-8c5049fa4455","full_name":"Lindorfer, Lukas"},{"id":"7bc2734a-e2c6-11ea-9824-a2ed5f0662a8","last_name":"Robb","first_name":"Jennifer","full_name":"Robb, Jennifer"},{"full_name":"Beikzadeh Abbasi, Farnaz","first_name":"Farnaz","last_name":"Beikzadeh Abbasi","id":"0344bfb9-3feb-11ee-87e9-c27edc800bcd"},{"full_name":"Strahodinsky, Florian","first_name":"Florian","last_name":"Strahodinsky","id":"979E35EE-C996-11E9-8C7C-CF13E6697425"},{"full_name":"Leitner, Hanna","last_name":"Leitner","first_name":"Hanna","id":"8fc5c6f6-5903-11ec-abad-c83f046253e7"},{"full_name":"Rajendran, Harikrishnan","id":"876b6b34-8ff4-11ec-97c9-8d95a7aae416","first_name":"Harikrishnan","last_name":"Rajendran"},{"full_name":"Schmitt, Thomas","first_name":"Thomas","last_name":"Schmitt"},{"orcid":"0000-0002-2193-3868","last_name":"Cremer","first_name":"Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","full_name":"Cremer, Sylvia"}],"type":"journal_article","citation":{"chicago":"Dawson, Erika, Michaela Hönigsberger, Niklas Kampleitner, Anna V Grasse, Lukas Lindorfer, Jennifer Robb, Farnaz Beikzadeh, et al. “Altruistic Disease Signalling in Ant Colonies.” <i>Nature Communications</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41467-025-66175-z\">https://doi.org/10.1038/s41467-025-66175-z</a>.","ama":"Dawson E, Hönigsberger M, Kampleitner N, et al. Altruistic disease signalling in ant colonies. <i>Nature Communications</i>. 2025;16. doi:<a href=\"https://doi.org/10.1038/s41467-025-66175-z\">10.1038/s41467-025-66175-z</a>","ista":"Dawson E, Hönigsberger M, Kampleitner N, Grasse AV, Lindorfer L, Robb J, Beikzadeh F, Strahodinsky F, Leitner H, Rajendran H, Schmitt T, Cremer S. 2025. Altruistic disease signalling in ant colonies. Nature Communications. 16, 10511.","short":"E. Dawson, M. Hönigsberger, N. Kampleitner, A.V. Grasse, L. Lindorfer, J. Robb, F. Beikzadeh, F. Strahodinsky, H. Leitner, H. Rajendran, T. Schmitt, S. Cremer, Nature Communications 16 (2025).","ieee":"E. Dawson <i>et al.</i>, “Altruistic disease signalling in ant colonies,” <i>Nature Communications</i>, vol. 16. Springer Nature, 2025.","apa":"Dawson, E., Hönigsberger, M., Kampleitner, N., Grasse, A. V., Lindorfer, L., Robb, J., … Cremer, S. (2025). Altruistic disease signalling in ant colonies. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-025-66175-z\">https://doi.org/10.1038/s41467-025-66175-z</a>","mla":"Dawson, Erika, et al. “Altruistic Disease Signalling in Ant Colonies.” <i>Nature Communications</i>, vol. 16, 10511, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41467-025-66175-z\">10.1038/s41467-025-66175-z</a>."},"date_created":"2025-01-27T11:28:05Z","scopus_import":"1","title":"Altruistic disease signalling in ant colonies","day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","article_number":"10511","department":[{"_id":"SyCr"},{"_id":"LifeSc"}],"date_published":"2025-12-01T00:00:00Z","has_accepted_license":"1","DOAJ_listed":"1","file_date_updated":"2025-12-15T13:30:33Z","acknowledgement":"We thank Joergen Eilenberg and Nicolai V. Meyling for the fungal strain, and the ISTA Social Immunity team, Jonghyun Park and Yuko Ulrich for ant collection. We also thank the Social Immunity team, in particular David Moreno Martínez, Tanvi Madaan, Wilfrid Jean Louis and Jessica Kirchner, for experimental and molecular support, as well as Friedrich Fochler for technical support with the chemical analysis, and the ISTA Lab Support Facility, including the mass spectrometry unit, for general and chemical laboratory support. We further thank Marco Ribezzi for advice on 13C calculations and Ernst Pittenauer for discussion of the chemical data, Chris Pull and Michael Sixt for project discussion, and the Social Immunity team for comments on the manuscript. The study was funded by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation Programme (No. 771402; EPIDEMICSonCHIP) to SC.","abstract":[{"lang":"eng","text":"Sick individuals often conceal their disease status to group members, thereby preventing social exclusion or aggression. Here we show by behavioural, chemical, immunological and infection load analyses that sick ant pupae instead actively emit a chemical signal that in itself is sufficient to trigger their own destruction by colony members. In our experiments, this altruistic disease-signalling was performed only by worker but not queen pupae. The lack of signalling by queen pupae did not constitute cheating behaviour, but reflected their superior immune capabilities. Worker pupae suffered from extensive pathogen replication whereas queen pupae were able to restrain their infection. Our data suggest the evolution of a finely-tuned signalling system in which it is not the induction of an individual’s immune response, but rather its failure to overcome the infection, that triggers pupal signalling for sacrifice. This demonstrates a balanced interplay between individual and social immunity that efficiently achieves whole-colony health."}],"_id":"18892"},{"year":"2025","external_id":{"isi":["001400731500001"],"arxiv":["2410.19695"]},"page":"285-292","file":[{"date_created":"2025-12-30T07:24:34Z","file_name":"2025_MonthlyNoticesRAS_Xing.pdf","relation":"main_file","content_type":"application/pdf","creator":"dernst","access_level":"open_access","success":1,"checksum":"49fb4fe69f487d36169ccea60acbeccc","file_id":"20881","file_size":2974244,"date_updated":"2025-12-30T07:24:34Z"}],"volume":537,"OA_place":"publisher","date_updated":"2025-12-30T07:25:37Z","quality_controlled":"1","oa_version":"Published Version","publication":"Monthly Notices of the Royal Astronomical Society","publisher":"Oxford University Press","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"PlanS_conform":"1","publication_identifier":{"issn":["0035-8711"],"eissn":["1365-2966"]},"oa":1,"fulldoi":"https://doi.org/10.1093/mnras/stae2820","arxiv":1,"article_processing_charge":"Yes","doi":"10.1093/mnras/stae2820","OA_type":"gold","intvolume":"       537","ddc":["520"],"publication_status":"published","article_type":"original","month":"02","project":[{"grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"language":[{"iso":"eng"}],"ec_funded":1,"author":[{"full_name":"Xing, Zepei","last_name":"Xing","first_name":"Zepei"},{"full_name":"Torres Rodriguez, Santiago","orcid":"0000-0002-3150-8988","first_name":"Santiago","last_name":"Torres Rodriguez","id":"a8df4360-4328-11ee-8f1a-e502d0c83fc2"},{"orcid":"0000-0002-6960-6911","first_name":"Ylva Louise Linsdotter","last_name":"Götberg","id":"d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d","full_name":"Götberg, Ylva Louise Linsdotter"},{"last_name":"Trani","first_name":"Alessandro A.","full_name":"Trani, Alessandro A."},{"full_name":"Korol, Valeriya","first_name":"Valeriya","last_name":"Korol"},{"full_name":"Cuadra, Jorge","first_name":"Jorge","last_name":"Cuadra"}],"type":"journal_article","citation":{"ista":"Xing Z, Torres Rodriguez S, Götberg YLL, Trani AA, Korol V, Cuadra J. 2025. Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries. Monthly Notices of the Royal Astronomical Society. 537(1), 285–292.","ama":"Xing Z, Torres Rodriguez S, Götberg YLL, Trani AA, Korol V, Cuadra J. Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries. <i>Monthly Notices of the Royal Astronomical Society</i>. 2025;537(1):285-292. doi:<a href=\"https://doi.org/10.1093/mnras/stae2820\">10.1093/mnras/stae2820</a>","chicago":"Xing, Zepei, Santiago Torres Rodriguez, Ylva Louise Linsdotter Götberg, Alessandro A. Trani, Valeriya Korol, and Jorge Cuadra. “Combining REBOUND and MESA: Dynamical Evolution of Planets Orbiting Interacting Binaries.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/mnras/stae2820\">https://doi.org/10.1093/mnras/stae2820</a>.","mla":"Xing, Zepei, et al. “Combining REBOUND and MESA: Dynamical Evolution of Planets Orbiting Interacting Binaries.” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 537, no. 1, Oxford University Press, 2025, pp. 285–92, doi:<a href=\"https://doi.org/10.1093/mnras/stae2820\">10.1093/mnras/stae2820</a>.","apa":"Xing, Z., Torres Rodriguez, S., Götberg, Y. L. L., Trani, A. A., Korol, V., &#38; Cuadra, J. (2025). Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries. <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/mnras/stae2820\">https://doi.org/10.1093/mnras/stae2820</a>","short":"Z. Xing, S. Torres Rodriguez, Y.L.L. Götberg, A.A. Trani, V. Korol, J. Cuadra, Monthly Notices of the Royal Astronomical Society 537 (2025) 285–292.","ieee":"Z. Xing, S. Torres Rodriguez, Y. L. L. Götberg, A. A. Trani, V. Korol, and J. Cuadra, “Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries,” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 537, no. 1. Oxford University Press, pp. 285–292, 2025."},"date_created":"2025-02-02T23:01:53Z","scopus_import":"1","isi":1,"issue":"1","title":"Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries","day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","department":[{"_id":"YlGo"},{"_id":"LiBu"}],"date_published":"2025-02-01T00:00:00Z","has_accepted_license":"1","file_date_updated":"2025-12-30T07:24:34Z","DOAJ_listed":"1","acknowledgement":"We thank the participants of the 2023 Kavli Summer Program in Astrophysics, hosted by the Max Planck Institute for Astrophysics and funded by the Kavli Foundation. In particular, Holly Preece, Selma de Mink, and Stephen Justham for their feedback and comments on our work. ZX acknowledges support from the China Scholarship Council (CSC). ST acknowledges the funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 101034413. AAT acknowledges support from the Horizon Europe research and innovation programmes under the Marie Skłodowska-Curie grant agreement no. 101103134.","_id":"18984","abstract":[{"lang":"eng","text":"Although planets have been found orbiting binary systems, whether they can survive binary interactions is debated. While the tightest-orbit binaries should host the most dynamically stable and long-lived circumbinary planetary systems, they are also the systems that are expected to experience mass transfer, common envelope evolution, or stellar mergers. In this study, we explore the effect of stable non-conservative mass transfer on the dynamical evolution of circumbinary planets. We present a new script that seamlessly integrates binary evolution data from the 1D binary stellar evolution code MESA into the N-body simulation code REBOUND. This integration framework enables a comprehensive examination of the dynamical evolution of circumbinary planets orbiting mass-transferring binaries, while simultaneously accounting for the detailed stellar structure evolution. In addition, we introduce a recalibration method to mitigate numerical errors from updates of binary properties during the system's dynamical evolution. We construct a reference binary model in which a 2.21M⊙ star loses its hydrogen-rich envelope through non-conservative mass transfer to the 1.76M⊙ companion star, creating a 0.38M⊙ subdwarf. We find the tightest stable orbital separation for circumbinary planets to be ≃2.5 times the binary separation after mass transfer. Accounting for tides by using the interior stellar structure, we find that tidal effects become apparent after the rapid mass transfer phase and start to fade away during the latter stage of the slow mass transfer phase. Our research provides a new framework for exploring circumbinary planet dynamics in interacting binary systems."}]},{"type":"journal_article","date_created":"2025-02-02T23:01:54Z","citation":{"chicago":"Chen, Liangzhi, Philipp Brun, Pascal Buri, Simone Fatichi, Arthur Gessler, Michael McCarthy, Francesca Pellicciotti, Benjamin Stocker, and Dirk Nikolaus Karger. “Global Increase in the Occurrence and Impact of Multiyear Droughts.” <i>Science</i>. AAAS, 2025. <a href=\"https://doi.org/10.1126/science.ado4245\">https://doi.org/10.1126/science.ado4245</a>.","ama":"Chen L, Brun P, Buri P, et al. Global increase in the occurrence and impact of multiyear droughts. <i>Science</i>. 2025;387(6731):278-284. doi:<a href=\"https://doi.org/10.1126/science.ado4245\">10.1126/science.ado4245</a>","ista":"Chen L, Brun P, Buri P, Fatichi S, Gessler A, McCarthy M, Pellicciotti F, Stocker B, Karger DN. 2025. Global increase in the occurrence and impact of multiyear droughts. Science. 387(6731), 278–284.","short":"L. Chen, P. Brun, P. Buri, S. Fatichi, A. Gessler, M. McCarthy, F. Pellicciotti, B. Stocker, D.N. Karger, Science 387 (2025) 278–284.","ieee":"L. Chen <i>et al.</i>, “Global increase in the occurrence and impact of multiyear droughts,” <i>Science</i>, vol. 387, no. 6731. AAAS, pp. 278–284, 2025.","apa":"Chen, L., Brun, P., Buri, P., Fatichi, S., Gessler, A., McCarthy, M., … Karger, D. N. (2025). Global increase in the occurrence and impact of multiyear droughts. <i>Science</i>. AAAS. <a href=\"https://doi.org/10.1126/science.ado4245\">https://doi.org/10.1126/science.ado4245</a>","mla":"Chen, Liangzhi, et al. “Global Increase in the Occurrence and Impact of Multiyear Droughts.” <i>Science</i>, vol. 387, no. 6731, AAAS, 2025, pp. 278–84, doi:<a href=\"https://doi.org/10.1126/science.ado4245\">10.1126/science.ado4245</a>."},"issue":"6731","scopus_import":"1","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Global increase in the occurrence and impact of multiyear droughts","day":"17","status":"public","date_published":"2025-01-17T00:00:00Z","department":[{"_id":"FrPe"}],"acknowledgement":"This study received support from the Extremes Research Program funded by the Swiss Federal Institute for Forest, Snow and Landscape Research (WSL) within the EMERGE project of the Extremes program.","_id":"18985","abstract":[{"text":"Persistent multiyear drought (MYD) events pose a growing threat to nature and humans in a changing climate. We identified and inventoried global MYDs by detecting spatiotemporally contiguous climatic anomalies, showing that MYDs have become drier, hotter, and led to increasingly diminished vegetation greenness. The global terrestrial land affected by MYDs has increased at a rate of 49,279 ± 14,771 square kilometers per year from 1980 to 2018. Temperate grasslands have exhibited the greatest declines in vegetation greenness during MYDs, whereas boreal and tropical forests have had comparably minor responses. With MYDs becoming more common, this global quantitative inventory of the occurrence, severity, trend, and impact of MYDs provides an important benchmark for facilitating more effective and collaborative preparedness toward mitigation of and adaptation to such extreme events.","lang":"eng"}],"year":"2025","volume":387,"page":"278-284","external_id":{"isi":["001491931700027"],"pmid":["39818908"]},"date_updated":"2025-09-30T10:24:34Z","quality_controlled":"1","oa_version":"None","publisher":"AAAS","publication":"Science","fulldoi":"https://doi.org/10.1126/science.ado4245","article_processing_charge":"No","pmid":1,"publication_identifier":{"eissn":["1095-9203"]},"doi":"10.1126/science.ado4245","OA_type":"closed access","month":"01","intvolume":"       387","publication_status":"published","article_type":"original","author":[{"last_name":"Chen","first_name":"Liangzhi","full_name":"Chen, Liangzhi"},{"full_name":"Brun, Philipp","first_name":"Philipp","last_name":"Brun"},{"full_name":"Buri, Pascal","id":"317987aa-9421-11ee-ac5a-b941b041abba","last_name":"Buri","first_name":"Pascal"},{"last_name":"Fatichi","first_name":"Simone","full_name":"Fatichi, Simone"},{"first_name":"Arthur","last_name":"Gessler","full_name":"Gessler, Arthur"},{"full_name":"Mccarthy, Michael","first_name":"Michael","last_name":"Mccarthy","id":"22a2674a-61ce-11ee-94b5-d18813baf16f"},{"full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","orcid":"0000-0002-5554-8087","first_name":"Francesca","last_name":"Pellicciotti"},{"first_name":"Benjamin","last_name":"Stocker","full_name":"Stocker, Benjamin"},{"first_name":"Dirk Nikolaus","last_name":"Karger","full_name":"Karger, Dirk Nikolaus"}],"language":[{"iso":"eng"}]},{"_id":"18986","abstract":[{"lang":"eng","text":"We consider a prototypical problem of Bayesian inference for a structured spiked model: a low-rank signal is corrupted by additive noise. While both information-theoretic and algorithmic limits are well understood when the noise is a Gaussian Wigner matrix, the more realistic case of structured noise still remains challenging. To capture the structure while maintaining mathematical tractability, a line of work has focused on rotationally invariant noise. However, existing studies either provide suboptimal algorithms or are limited to a special class of noise ensembles. In this paper, using tools from statistical physics (replica method) and random matrix theory (generalized spherical integrals) we establish the characterization of the information-theoretic limits for a noise matrix drawn from a general trace ensemble. Remarkably, our analysis unveils the asymptotic equivalence between the rotationally invariant model and a surrogate Gaussian one. Finally, we show how to saturate the predicted statistical limits using an efficient algorithm inspired by the theory of adaptive Thouless-Anderson-Palmer (TAP) equations."}],"has_accepted_license":"1","DOAJ_listed":"1","file_date_updated":"2025-02-03T08:27:59Z","acknowledgement":"J.B., F.C., and Y.X. were funded by the European Union (ERC, CHORAL, Project No. 101039794). Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. M.M. was supported by the 2019 Lopez-Loreta Prize. J.B. acknowledges discussions with TianQi Hou at the initial stage of the project, as well as with Antoine Bodin.","department":[{"_id":"MaMo"}],"date_published":"2025-01-22T00:00:00Z","status":"public","article_number":"013081","title":"Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise","day":"22","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","citation":{"chicago":"Barbier, Jean, Francesco Camilli, Yizhou Xu, and Marco Mondelli. “Information Limits and Thouless-Anderson-Palmer Equations for Spiked Matrix Models with Structured Noise.” <i>Physical Review Research</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/PhysRevResearch.7.013081\">https://doi.org/10.1103/PhysRevResearch.7.013081</a>.","ama":"Barbier J, Camilli F, Xu Y, Mondelli M. Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise. <i>Physical Review Research</i>. 2025;7. doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.7.013081\">10.1103/PhysRevResearch.7.013081</a>","ista":"Barbier J, Camilli F, Xu Y, Mondelli M. 2025. Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise. Physical Review Research. 7, 013081.","mla":"Barbier, Jean, et al. “Information Limits and Thouless-Anderson-Palmer Equations for Spiked Matrix Models with Structured Noise.” <i>Physical Review Research</i>, vol. 7, 013081, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.7.013081\">10.1103/PhysRevResearch.7.013081</a>.","short":"J. Barbier, F. Camilli, Y. Xu, M. Mondelli, Physical Review Research 7 (2025).","ieee":"J. Barbier, F. Camilli, Y. Xu, and M. Mondelli, “Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise,” <i>Physical Review Research</i>, vol. 7. American Physical Society, 2025.","apa":"Barbier, J., Camilli, F., Xu, Y., &#38; Mondelli, M. (2025). Information limits and Thouless-Anderson-Palmer equations for spiked matrix models with structured noise. <i>Physical Review Research</i>. 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Shahryar"},{"full_name":"Napier, Melanie","last_name":"Napier","first_name":"Melanie"},{"last_name":"Belanger-Quintana","first_name":"Amaya","full_name":"Belanger-Quintana, Amaya"},{"first_name":"Asuri N.","last_name":"Prasad","full_name":"Prasad, Asuri N."},{"last_name":"Jakobczyk","first_name":"Jessica","full_name":"Jakobczyk, Jessica"},{"full_name":"Roubertie, Agathe","last_name":"Roubertie","first_name":"Agathe"},{"last_name":"Rupar","first_name":"Tony","full_name":"Rupar, Tony"},{"full_name":"Sultan, Tipu","first_name":"Tipu","last_name":"Sultan"},{"first_name":"Mehran Beiraghi","last_name":"Toosi","full_name":"Toosi, Mehran Beiraghi"},{"full_name":"Sazanov, Leonid A","last_name":"Sazanov","first_name":"Leonid A","orcid":"0000-0002-0977-7989","id":"338D39FE-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Severino, Mariasavina","last_name":"Severino","first_name":"Mariasavina"},{"full_name":"Houlden, Henry","first_name":"Henry","last_name":"Houlden"},{"full_name":"Taylor, Robert W.","last_name":"Taylor","first_name":"Robert W."},{"last_name":"Maroofian","first_name":"Reza","full_name":"Maroofian, Reza"}],"OA_type":"gold","intvolume":"         7","month":"01","publication_status":"published","article_type":"original","ddc":["570"],"date_created":"2025-02-02T23:01:55Z","citation":{"ista":"Kaiyrzhanov R, Thompson K, Efthymiou S, Mukushev A, Zharylkassyn A, Prasad C, Karimiani EG, Alvi JR, Niyazov D, Alahmad A, Babaei M, Tajsharghi H, Albash B, Alaqeel A, Charif M, Hashemi N, Heidari M, Kalantar SM, Lenaers G, Mehrjardi MYV, Srinivasan VM, Gowda VK, Mirabutalebi SH, Carere DA, Movahedinia M, Murphy D, Mcfarland R, Abdel-Hamid MS, Elhossini RM, Alavi S, Napier M, Belanger-Quintana A, Prasad AN, Jakobczyk J, Roubertie A, Rupar T, Sultan T, Toosi MB, Sazanov LA, Severino M, Houlden H, Taylor RW, Maroofian R. 2025. Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. Brain Communications. 7(1), fcae453.","chicago":"Kaiyrzhanov, Rauan, Kyle Thompson, Stephanie Efthymiou, Askhat Mukushev, Akbota Zharylkassyn, Chitra Prasad, Ehsan Ghayoor Karimiani, et al. “Biallelic NDUFA13 Variants Lead to a Neurodevelopmental Phenotype with Gradual Neurological Impairment.” <i>Brain Communications</i>. Oxford University Press, 2025. <a href=\"https://doi.org/10.1093/braincomms/fcae453\">https://doi.org/10.1093/braincomms/fcae453</a>.","ama":"Kaiyrzhanov R, Thompson K, Efthymiou S, et al. Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. <i>Brain Communications</i>. 2025;7(1). doi:<a href=\"https://doi.org/10.1093/braincomms/fcae453\">10.1093/braincomms/fcae453</a>","apa":"Kaiyrzhanov, R., Thompson, K., Efthymiou, S., Mukushev, A., Zharylkassyn, A., Prasad, C., … Maroofian, R. (2025). Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. <i>Brain Communications</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/braincomms/fcae453\">https://doi.org/10.1093/braincomms/fcae453</a>","short":"R. Kaiyrzhanov, K. Thompson, S. Efthymiou, A. Mukushev, A. Zharylkassyn, C. Prasad, E.G. Karimiani, J.R. Alvi, D. Niyazov, A. Alahmad, M. Babaei, H. Tajsharghi, B. Albash, A. Alaqeel, M. Charif, N. Hashemi, M. Heidari, S.M. Kalantar, G. Lenaers, M.Y.V. Mehrjardi, V.M. Srinivasan, V.K. Gowda, S.H. Mirabutalebi, D.A. Carere, M. Movahedinia, D. Murphy, R. Mcfarland, M.S. Abdel-Hamid, R.M. Elhossini, S. Alavi, M. Napier, A. Belanger-Quintana, A.N. Prasad, J. Jakobczyk, A. Roubertie, T. Rupar, T. Sultan, M.B. Toosi, L.A. Sazanov, M. Severino, H. Houlden, R.W. Taylor, R. Maroofian, Brain Communications 7 (2025).","ieee":"R. Kaiyrzhanov <i>et al.</i>, “Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment,” <i>Brain Communications</i>, vol. 7, no. 1. Oxford University Press, 2025.","mla":"Kaiyrzhanov, Rauan, et al. “Biallelic NDUFA13 Variants Lead to a Neurodevelopmental Phenotype with Gradual Neurological Impairment.” <i>Brain Communications</i>, vol. 7, no. 1, fcae453, Oxford University Press, 2025, doi:<a href=\"https://doi.org/10.1093/braincomms/fcae453\">10.1093/braincomms/fcae453</a>."},"type":"journal_article","title":"Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment","day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","issue":"1","department":[{"_id":"LeSa"}],"date_published":"2025-01-01T00:00:00Z","status":"public","article_number":"fcae453","abstract":[{"lang":"eng","text":"Biallelic variants in NADH (nicotinamide adenine dinucleotide (NAD) + hydrogen (H))-ubiquinone oxidoreductase 1 alpha subcomplex 13 have been linked to mitochondrial complex I deficiency, nuclear type 28, based on three affected individuals from two families. With only two families reported, the clinical and molecular spectrum of NADH-ubiquinone oxidoreductase 1 alpha subcomplex 13–related diseases remains unclear. We report 10 additional affected individuals from nine independent families, identifying four missense variants (including recurrent c.170G > A) and three ultra-rare or novel predicted loss-of-function biallelic variants. Updated clinical–radiological data from previously reported families and a literature review compiling clinical features of all reported patients with isolated complex I deficiency caused by 43 genes encoding complex I subunits and assembly factors are also provided. Our cohort (mean age 7.8 ± 5.4 years; range 2.5–18) predominantly presented a moderate-to-severe neurodevelopmental syndrome with oculomotor abnormalities (84%), spasticity/hypertonia (83%), hypotonia (69%), cerebellar ataxia (66%), movement disorders (58%) and epilepsy (46%). Neuroimaging revealed bilateral symmetric T2 hyperintense substantia nigra lesions (91.6%) and optic nerve atrophy (66.6%). Protein modeling suggests missense variants destabilize a critical junction between the hydrophilic and membrane arms of complex I. Fibroblasts from two patients showed reduced complex I activity and compensatory complex IV activity increase. This study characterizes NADH-ubiquinone oxidoreductase 1 alpha subcomplex 13–related disease in 13 individuals, highlighting genotype–phenotype correlations."}],"_id":"18987","file_date_updated":"2025-08-05T11:54:23Z","has_accepted_license":"1","DOAJ_listed":"1","acknowledgement":"We thank all individuals and relatives for consent to be part of the study. Families 1–4, 7, were collected as part of the SYNaPS Study Group collaboration funded by The Wellcome Trust and strategic award (Synaptopathies) funding (WT093205 MA and WT104033AIA), and research was conducted as part of the Queen Square Genomics group at the University College London, supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre. We are also grateful to Queen Square Genomics at the Institute of Neurology University College London, supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre, for the bioinformatics support. For the purpose of Open Access, the author has applied a CC BY public copyright license to any Author Accepted Manuscript version arising from this submission.\r\nThis study was funded by the Medical Research Council (MR/S01165X/1, MR/S005021/1, G0601943). The Medical Research Council (MR/S01165X/1, MR/S005021/1, MRC ICGNMD), Wellcome Trust 221951/Z/20/Z, Global Parkinson’s Genetics Program, Aligning Science Across Parkinson’s, The Michael J. Fox Foundation, The National Institute for Health Research University College London Hospitals Biomedical Research Centre, Rosetree Trust, Multiple System Atrophy Trust, Brain Research UK, Sparks Great Ormond Street Hospital Charity, Muscular Dystrophy, Muscular Dystrophy Association United States of America, and King Baudouin Foundation. H.T. was supported by the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 608473. M.S.A.-H. is funded by the Science and Technology Development Fund Academy of Science Research and Technology Egypt (Grant number: 33492, Ethical approval number: 20066). R.W.T. is funded by the Wellcome Centre for Mitochondrial Research (203105/Z/16/Z), the Mitochondrial Disease Patient Cohort (UK) (G0800674), the Medical Research Council International Centre for Genomic Medicine in Neuromuscular Disease (MR/S005021/1), the Medical Research Council (MR/W019027/1), the Lily Foundation, Mito Foundation, the Pathological Society, LifeArc, the UK National Institute for Health Research Biomedical Research Centre for Ageing and Age-related disease award to the Newcastle upon Tyne Foundation Hospitals NHS Trust and the UK NHS Highly Specialised Service for Rare Mitochondrial Disorders of Adults and Children. H.H. and R.K. are supported by Global Parkinson’s Genetic Program and The Michael J. Fox Foundation Grant ID: MJFF-022153."},{"date_created":"2025-02-04T10:36:18Z","citation":{"ista":"Chiossi HSC. 2025. Research data for the publication ‘Learning reshapes the hippocampal representation hierarchy’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:18991\">10.15479/AT:ISTA:18991</a>.","chicago":"Chiossi, Heloisa S. C. “Research Data for the Publication ‘Learning Reshapes the Hippocampal Representation Hierarchy.’” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/AT:ISTA:18991\">https://doi.org/10.15479/AT:ISTA:18991</a>.","ama":"Chiossi HSC. Research data for the publication “Learning reshapes the hippocampal representation hierarchy.” 2025. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:18991\">10.15479/AT:ISTA:18991</a>","apa":"Chiossi, H. S. C. (2025). Research data for the publication “Learning reshapes the hippocampal representation hierarchy.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:18991\">https://doi.org/10.15479/AT:ISTA:18991</a>","short":"H.S.C. Chiossi, (2025).","ieee":"H. S. C. Chiossi, “Research data for the publication ‘Learning reshapes the hippocampal representation hierarchy.’” Institute of Science and Technology Austria, 2025.","mla":"Chiossi, Heloisa S. C. <i>Research Data for the Publication “Learning Reshapes the Hippocampal Representation Hierarchy.”</i> Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:18991\">10.15479/AT:ISTA:18991</a>."},"type":"research_data","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"04","title":"Research data for the publication \"Learning reshapes the hippocampal representation hierarchy\"","date_published":"2025-02-04T00:00:00Z","department":[{"_id":"GradSch"},{"_id":"JoCs"},{"_id":"GaTk"}],"keyword":["hippocampus","electrophysiology","behavior"],"status":"public","_id":"18991","abstract":[{"text":"Research data for the article \"Learning reshapes the hippocampal representation hierarchy\" from Chiossi et al. (PNAS, 2025). The data includes hippocampal CA1 unit activity and behaviour tracking of 5 Long Evans rats during the learning of an associative memory task. Detailed information can be found in the 'readme.txt' file.","lang":"eng"}],"acknowledgement":"Thanks to Rebecca Morse for performing one of the experiments under H.S.C.C. supervision and Jago Wallenschus for technical support, especially with maze design.","contributor":[{"contributor_type":"researcher","orcid":"0000-0001-8849-6570","last_name":"Nardin","first_name":"Michele","id":"30BD0376-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Tkačik","first_name":"Gašper","orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","contributor_type":"supervisor"},{"id":"3FA14672-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5193-4036","first_name":"Jozsef L","last_name":"Csicsvari","contributor_type":"supervisor"}],"file_date_updated":"2025-02-04T10:18:33Z","has_accepted_license":"1","file":[{"date_updated":"2025-02-04T10:16:52Z","success":1,"file_id":"18992","checksum":"04d761ed42e8879abffde04a560409ce","file_size":769383201,"file_name":"Chiossi_etal_2025_PNAS_data.zip","content_type":"application/zip","relation":"main_file","creator":"hchiossi","access_level":"open_access","date_created":"2025-02-04T10:16:52Z"},{"file_id":"18993","checksum":"50602931dcd33e4f009ed46af11335f3","success":1,"file_size":3215,"date_updated":"2025-02-04T10:18:33Z","date_created":"2025-02-04T10:18:33Z","file_name":"readme.txt","access_level":"open_access","relation":"main_file","creator":"hchiossi","content_type":"text/plain"}],"year":"2025","tmp":{"short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"related_material":{"record":[{"relation":"used_in_publication","id":"19453","status":"public"}]},"publisher":"Institute of Science and Technology Austria","oa_version":"Published Version","date_updated":"2026-05-06T13:12:00Z","OA_place":"repository","doi":"10.15479/AT:ISTA:18991","article_processing_charge":"No","corr_author":"1","fulldoi":"https://doi.org/10.15479/AT:ISTA:18991","oa":1,"author":[{"id":"2BBA502C-F248-11E8-B48F-1D18A9856A87","last_name":"Chiossi","first_name":"Heloisa","orcid":"0009-0004-2973-278X","full_name":"Chiossi, Heloisa"}],"ddc":["570"],"month":"02","OA_type":"gold","acknowledged_ssus":[{"_id":"PreCl"},{"_id":"M-Shop"}]},{"oa_version":"Published Version","quality_controlled":"1","date_updated":"2025-09-30T10:25:15Z","OA_place":"publisher","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication":"Discrete Mathematics","publisher":"Elsevier","year":"2025","file":[{"date_created":"2025-05-05T12:56:12Z","access_level":"open_access","content_type":"application/pdf","creator":"dernst","relation":"main_file","file_name":"2025_DiscreteMath_Cortes.pdf","file_size":850988,"file_id":"19657","checksum":"6723cbb02b6aea0d05f37d167da00c03","success":1,"date_updated":"2025-05-05T12:56:12Z"}],"external_id":{"isi":["001401656900001"],"arxiv":["2306.02195"]},"volume":348,"publication_status":"published","article_type":"original","month":"04","ddc":["510"],"intvolume":"       348","OA_type":"hybrid","author":[{"full_name":"Cortés, Pedro P.","first_name":"Pedro P.","last_name":"Cortés"},{"first_name":"Pankaj","last_name":"Kumar","full_name":"Kumar, Pankaj"},{"full_name":"Moore, Benjamin","last_name":"Moore","first_name":"Benjamin","id":"6dc1a1be-bf1c-11ed-8d2b-d044840f49d6"},{"first_name":"Patrice","last_name":"Ossona de Mendez","full_name":"Ossona de Mendez, Patrice"},{"full_name":"Quiroz, Daniel A.","last_name":"Quiroz","first_name":"Daniel A."}],"language":[{"iso":"eng"}],"article_processing_charge":"Yes (via OA deal)","arxiv":1,"corr_author":"1","fulldoi":"https://doi.org/10.1016/j.disc.2024.114377","oa":1,"publication_identifier":{"issn":["0012-365X"]},"doi":"10.1016/j.disc.2024.114377","issue":"4","isi":1,"scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"01","title":"Subchromatic numbers of powers of graphs with excluded minors","type":"journal_article","citation":{"ieee":"P. P. Cortés, P. Kumar, B. Moore, P. Ossona de Mendez, and D. A. Quiroz, “Subchromatic numbers of powers of graphs with excluded minors,” <i>Discrete Mathematics</i>, vol. 348, no. 4. Elsevier, 2025.","apa":"Cortés, P. P., Kumar, P., Moore, B., Ossona de Mendez, P., &#38; Quiroz, D. A. (2025). Subchromatic numbers of powers of graphs with excluded minors. <i>Discrete Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.disc.2024.114377\">https://doi.org/10.1016/j.disc.2024.114377</a>","short":"P.P. Cortés, P. Kumar, B. Moore, P. Ossona de Mendez, D.A. Quiroz, Discrete Mathematics 348 (2025).","mla":"Cortés, Pedro P., et al. “Subchromatic Numbers of Powers of Graphs with Excluded Minors.” <i>Discrete Mathematics</i>, vol. 348, no. 4, 114377, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.disc.2024.114377\">10.1016/j.disc.2024.114377</a>.","ama":"Cortés PP, Kumar P, Moore B, Ossona de Mendez P, Quiroz DA. Subchromatic numbers of powers of graphs with excluded minors. <i>Discrete Mathematics</i>. 2025;348(4). doi:<a href=\"https://doi.org/10.1016/j.disc.2024.114377\">10.1016/j.disc.2024.114377</a>","chicago":"Cortés, Pedro P., Pankaj Kumar, Benjamin Moore, Patrice Ossona de Mendez, and Daniel A. Quiroz. “Subchromatic Numbers of Powers of Graphs with Excluded Minors.” <i>Discrete Mathematics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.disc.2024.114377\">https://doi.org/10.1016/j.disc.2024.114377</a>.","ista":"Cortés PP, Kumar P, Moore B, Ossona de Mendez P, Quiroz DA. 2025. Subchromatic numbers of powers of graphs with excluded minors. Discrete Mathematics. 348(4), 114377."},"date_created":"2025-02-05T06:51:08Z","acknowledgement":"We thank an anonymous referee for pointing out an error in an earlier version of Theorem 3.1. We also thank an anonymous referee for pointing out numerous typos in an earlier version of the paper.","has_accepted_license":"1","file_date_updated":"2025-05-05T12:56:12Z","_id":"19002","abstract":[{"lang":"eng","text":"A k-subcolouring of a graph G is a function f : V (G) → {0,...,k − 1} such that the set of\r\nvertices coloured i induce a disjoint union of cliques. The subchromatic number, χsub(G),\r\nis the minimum k such that G admits a k-subcolouring. Nešetril, ˇ Ossona de Mendez,\r\nPilipczuk, and Zhu (2020), recently raised the problem of finding tight upper bounds for\r\nχsub(G2) when G is planar. We show that χsub(G2) ≤ 43 when G is planar, improving\r\ntheir bound of 135. We give even better bounds when the planar graph G has larger girth.\r\nMoreover, we show that χsub(G3) ≤ 95, improving the previous bound of 364. For these\r\nwe adapt some recent techniques of Almulhim and Kierstead (2022), while also extending\r\nthe decompositions of triangulated planar graphs of Van den Heuvel, Ossona de Mendez,\r\nQuiroz, Rabinovich and Siebertz (2017), to planar graphs of arbitrary girth. Note that these\r\ndecompositions are the precursors of the graph product structure theorem of planar graphs.\r\nWe give improved bounds for χsub(Gp) for all p ≥ 2, whenever G has bounded treewidth,\r\nbounded simple treewidth, bounded genus, or excludes a clique or biclique as a minor.\r\nFor this we introduce a family of parameters which form a gradation between the strong\r\nand the weak colouring numbers. We give upper bounds for these parameters for graphs\r\ncoming from such classes.\r\nFinally, we give a 2-approximation algorithm for the subchromatic number of graphs\r\nhaving a layering in which each layer has bounded cliquewidth and this layering is\r\ncomputable in polynomial time (like the class of all dth powers of planar graphs, for fixed\r\nd). This algorithm works even if the power p and the graph G is unknown."}],"article_number":"114377","status":"public","date_published":"2025-04-01T00:00:00Z","department":[{"_id":"MaKw"}]},{"year":"2025","external_id":{"arxiv":["2406.14718"],"pmid":["40093970"],"isi":["001412684400001"]},"page":"386-392","file":[{"success":1,"checksum":"b005ccf7448fee29c187cbc9b1944893","file_id":"20127","file_size":2252107,"date_updated":"2025-08-05T11:56:53Z","date_created":"2025-08-05T11:56:53Z","file_name":"2025_NaturePhysics_Vodeb.pdf","creator":"dernst","relation":"main_file","content_type":"application/pdf","access_level":"open_access"}],"volume":21,"oa_version":"Published Version","quality_controlled":"1","OA_place":"publisher","date_updated":"2025-09-30T10:29:15Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publisher":"Springer Nature","publication":"Nature Physics","related_material":{"link":[{"description":"News on ISTA Website","relation":"press_release","url":"https://ista.ac.at/en/news/dancing-bubbles-model-a-cosmic-disaster/"}]},"arxiv":1,"article_processing_charge":"Yes (via OA deal)","fulldoi":"https://doi.org/10.1038/s41567-024-02765-w","corr_author":"1","oa":1,"publication_identifier":{"issn":["1745-2473"],"eissn":["1745-2481"]},"PlanS_conform":"1","pmid":1,"doi":"10.1038/s41567-024-02765-w","intvolume":"        21","article_type":"original","publication_status":"published","month":"03","ddc":["530"],"OA_type":"hybrid","author":[{"first_name":"Jaka","last_name":"Vodeb","full_name":"Vodeb, Jaka"},{"full_name":"Desaules, Jean-Yves Marc","id":"6c292945-a610-11ed-9eec-c3be1ad62a80","orcid":"0000-0002-3749-6375","first_name":"Jean-Yves Marc","last_name":"Desaules"},{"first_name":"Andrew","last_name":"Hallam","full_name":"Hallam, Andrew"},{"full_name":"Rava, Andrea","last_name":"Rava","first_name":"Andrea"},{"full_name":"Humar, Gregor","first_name":"Gregor","last_name":"Humar"},{"full_name":"Willsch, Dennis","last_name":"Willsch","first_name":"Dennis"},{"full_name":"Jin, Fengping","last_name":"Jin","first_name":"Fengping"},{"last_name":"Willsch","first_name":"Madita","full_name":"Willsch, Madita"},{"last_name":"Michielsen","first_name":"Kristel","full_name":"Michielsen, Kristel"},{"first_name":"Zlatko","last_name":"Papić","full_name":"Papić, Zlatko"}],"language":[{"iso":"eng"}],"ec_funded":1,"project":[{"_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020","grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program"}],"type":"journal_article","date_created":"2025-02-06T10:07:13Z","citation":{"mla":"Vodeb, Jaka, et al. “Stirring the False Vacuum via Interacting Quantized Bubbles on a 5,564-Qubit Quantum Annealer.” <i>Nature Physics</i>, vol. 21, Springer Nature, 2025, pp. 386–92, doi:<a href=\"https://doi.org/10.1038/s41567-024-02765-w\">10.1038/s41567-024-02765-w</a>.","short":"J. Vodeb, J.-Y.M. Desaules, A. Hallam, A. Rava, G. Humar, D. Willsch, F. Jin, M. Willsch, K. Michielsen, Z. Papić, Nature Physics 21 (2025) 386–392.","ieee":"J. Vodeb <i>et al.</i>, “Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer,” <i>Nature Physics</i>, vol. 21. Springer Nature, pp. 386–392, 2025.","apa":"Vodeb, J., Desaules, J.-Y. M., Hallam, A., Rava, A., Humar, G., Willsch, D., … Papić, Z. (2025). Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. <i>Nature Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41567-024-02765-w\">https://doi.org/10.1038/s41567-024-02765-w</a>","ista":"Vodeb J, Desaules J-YM, Hallam A, Rava A, Humar G, Willsch D, Jin F, Willsch M, Michielsen K, Papić Z. 2025. Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. Nature Physics. 21, 386–392.","ama":"Vodeb J, Desaules J-YM, Hallam A, et al. Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer. <i>Nature Physics</i>. 2025;21:386-392. doi:<a href=\"https://doi.org/10.1038/s41567-024-02765-w\">10.1038/s41567-024-02765-w</a>","chicago":"Vodeb, Jaka, Jean-Yves Marc Desaules, Andrew Hallam, Andrea Rava, Gregor Humar, Dennis Willsch, Fengping Jin, Madita Willsch, Kristel Michielsen, and Zlatko Papić. “Stirring the False Vacuum via Interacting Quantized Bubbles on a 5,564-Qubit Quantum Annealer.” <i>Nature Physics</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41567-024-02765-w\">https://doi.org/10.1038/s41567-024-02765-w</a>."},"isi":1,"scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"01","title":"Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit quantum annealer","status":"public","date_published":"2025-03-01T00:00:00Z","department":[{"_id":"MaSe"}],"acknowledgement":"J.V., D.W. and M.W. acknowledge support from the project Jülich UNified Infrastructure for Quantum computing (JUNIQ) that has received funding from the German Federal Ministry of Education and Research (BMBF) and the Ministry of Culture and Science of the State of North Rhine-Westphalia. A.R. acknowledges support from the project HPCQS (101018180) of the European High-Performance Computing Joint Undertaking (EuroHPC JU). J.-Y.D., A.H. and Z.P. acknowledge support from the Leverhulme Trust Research Leadership Award RL-2019-015 and EPSRC grant nos. EP/R513258/1 and EP/W026848/1. J.-Y.D. acknowledges support from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no.101034413. This research was supported in part by grant no. NSF PHY-2309135 to the Kavli Institute for Theoretical Physics (KITP). Computational portions of this research work were carried out on ARC3 and ARC4, part of the high-performance computing facilities at the University of Leeds. G.H. acknowledges financial support from ARIS, P1-0040 Nonequilibrium Quantum System Dynamics. We gratefully acknowledge the Jülich Supercomputing Centre (https://www.fz-juelich.de/en/ias/jsc) for funding this project by providing computing time on the D-Wave Advantage System JUPSI through JUNIQ. We acknowledge helpful theoretical discussions with G. Lagnese and the quantum-simulation-related discussions with D-Wave’s experimental team, particularly A. MacDonald, G. Poulin-Lamarre, A. Daian and A. Berkley. We also thank V. Goliber and A. Mason for patiently organizing and mediating the corresponding meetings that enabled the discussions with D-Wave’s team. J.V., A.R., D.W., F.J., M.W. and K.M. gratefully acknowledge the Gauss Centre for Supercomputing e.V. (www.gauss-centre.eu) for funding this project by providing computing time on the GCS Supercomputer JUWELS at Jülich Supercomputing Centre (JSC).","has_accepted_license":"1","file_date_updated":"2025-08-05T11:56:53Z","_id":"19012","abstract":[{"text":"False vacuum decay—the transition from a metastable quantum state to a true vacuum state—plays an important role in quantum field theory and non-equilibrium phenomena such as phase transitions and dynamical metastability. The non-perturbative nature of false vacuum decay and the limited experimental access to this process make it challenging to study, leaving several open questions regarding how true vacuum bubbles form, move and interact. Here we observe quantized bubble formation in real time, a key feature of false vacuum decay dynamics, using a quantum annealer with 5,564 superconducting flux qubits. We develop an effective model that captures both initial bubble creation and subsequent interactions, and remains accurate under dissipation. The annealer reveals coherent scaling laws in the driven many-body dynamics for more than 1,000 intrinsic qubit time units. This work provides a method for investigating false vacuum dynamics of large quantum systems in quantum annealers.","lang":"eng"}]},{"quality_controlled":"1","date_updated":"2025-09-30T10:27:26Z","oa_version":"None","publisher":"American Chemical Society","publication":"Environmental Science and Technology","year":"2025","external_id":{"isi":["001406914100001"],"pmid":["39868426"]},"page":"2257-2265","volume":59,"OA_type":"closed access","month":"01","article_type":"original","intvolume":"        59","publication_status":"published","author":[{"full_name":"Parrella, Francesco","last_name":"Parrella","first_name":"Francesco"},{"id":"4bbe33b8-c59a-11ee-a1af-fa33d1ac42c4","last_name":"Brizzolara","first_name":"Stefano","full_name":"Brizzolara, Stefano"},{"full_name":"Holzner, Markus","first_name":"Markus","last_name":"Holzner"},{"first_name":"Denise M.","last_name":"Mitrano","full_name":"Mitrano, Denise M."}],"language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1021/acs.est.4c10551","article_processing_charge":"No","pmid":1,"publication_identifier":{"issn":["0013-936X"],"eissn":["1520-5851"]},"doi":"10.1021/acs.est.4c10551","issue":"4","scopus_import":"1","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","title":"Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates","day":"27","type":"journal_article","date_created":"2025-02-09T23:01:50Z","citation":{"ama":"Parrella F, Brizzolara S, Holzner M, Mitrano DM. Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. <i>Environmental Science and Technology</i>. 2025;59(4):2257-2265. doi:<a href=\"https://doi.org/10.1021/acs.est.4c10551\">10.1021/acs.est.4c10551</a>","chicago":"Parrella, Francesco, Stefano Brizzolara, Markus Holzner, and Denise M. Mitrano. “Microplastics Settling in Turbid Water: Impacts of Sediments-Induced Flow Patterns on Particle Deposition Rates.” <i>Environmental Science and Technology</i>. American Chemical Society, 2025. <a href=\"https://doi.org/10.1021/acs.est.4c10551\">https://doi.org/10.1021/acs.est.4c10551</a>.","ista":"Parrella F, Brizzolara S, Holzner M, Mitrano DM. 2025. Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. Environmental Science and Technology. 59(4), 2257–2265.","ieee":"F. Parrella, S. Brizzolara, M. Holzner, and D. M. Mitrano, “Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates,” <i>Environmental Science and Technology</i>, vol. 59, no. 4. American Chemical Society, pp. 2257–2265, 2025.","short":"F. Parrella, S. Brizzolara, M. Holzner, D.M. Mitrano, Environmental Science and Technology 59 (2025) 2257–2265.","apa":"Parrella, F., Brizzolara, S., Holzner, M., &#38; Mitrano, D. M. (2025). Microplastics settling in turbid water: Impacts of sediments-induced flow patterns on particle deposition rates. <i>Environmental Science and Technology</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.est.4c10551\">https://doi.org/10.1021/acs.est.4c10551</a>","mla":"Parrella, Francesco, et al. “Microplastics Settling in Turbid Water: Impacts of Sediments-Induced Flow Patterns on Particle Deposition Rates.” <i>Environmental Science and Technology</i>, vol. 59, no. 4, American Chemical Society, 2025, pp. 2257–65, doi:<a href=\"https://doi.org/10.1021/acs.est.4c10551\">10.1021/acs.est.4c10551</a>."},"acknowledgement":"F.P. and D.M.M. were funded through the Swiss National Science Foundation (grant number PCEFP2_186856).","abstract":[{"text":"When microplastics (MPs) enter water bodies, they undergo various transport processes, including sedimentation, which can be influenced by factors such as particle size, density, and interactions with other particles. Surface waters contain suspended natural particles (e.g., clay and silt), which may impact MP settling rates. Here, we investigated how the presence of suspended sediments (SS) influenced the deposition patterns and rates of MPs in turbid waters. We systematically analyzed the settling velocities of particles, including different MP sizes and SS concentrations, in a plexiglass column with a camera array. For each experimental variant, we collected data on thousands of individual MPs, strengthening the statistical analysis of the particles’ velocities. Simultaneous measurements of the SS flow and MPs trajectories revealed that the SS induced complex flow patterns, with MPs spending more time in downwelling flow regions, thereby accelerating MPs sedimentation. This effect was more pronounced when SS were aggregated. Additionally, we found that smaller MP fragments were more affected by the fluctuations than spheres or larger fragments. Collectively, our results provide valuable data for future MP fate models and help to understand the sedimentation processes of MPs in natural waters, which is crucial for assessing their environmental transport and impact.","lang":"eng"}],"_id":"19015","status":"public","date_published":"2025-01-27T00:00:00Z","department":[{"_id":"BjHo"}]},{"citation":{"short":"S. Glock, J. Kim, L. Lichev, O. Pikhurko, S. Sun, Canadian Journal of Mathematics (2025) 1–43.","ieee":"S. Glock, J. Kim, L. Lichev, O. Pikhurko, and S. Sun, “On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7,” <i>Canadian Journal of Mathematics</i>. Cambridge University Press, pp. 1–43, 2025.","apa":"Glock, S., Kim, J., Lichev, L., Pikhurko, O., &#38; Sun, S. (2025). On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. <i>Canadian Journal of Mathematics</i>. Cambridge University Press. <a href=\"https://doi.org/10.4153/s0008414x25000021\">https://doi.org/10.4153/s0008414x25000021</a>","mla":"Glock, Stefan, et al. “On the (k + 2, k)-Problem of Brown, Erdős, and Sós for k = 5,6,7.” <i>Canadian Journal of Mathematics</i>, Cambridge University Press, 2025, pp. 1–43, doi:<a href=\"https://doi.org/10.4153/s0008414x25000021\">10.4153/s0008414x25000021</a>.","ista":"Glock S, Kim J, Lichev L, Pikhurko O, Sun S. 2025. On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. Canadian Journal of Mathematics., 1–43.","chicago":"Glock, Stefan, Jaehoon Kim, Lyuben Lichev, Oleg Pikhurko, and Shumin Sun. “On the (k + 2, k)-Problem of Brown, Erdős, and Sós for k = 5,6,7.” <i>Canadian Journal of Mathematics</i>. Cambridge University Press, 2025. <a href=\"https://doi.org/10.4153/s0008414x25000021\">https://doi.org/10.4153/s0008414x25000021</a>.","ama":"Glock S, Kim J, Lichev L, Pikhurko O, Sun S. On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. <i>Canadian Journal of Mathematics</i>. 2025:1-43. doi:<a href=\"https://doi.org/10.4153/s0008414x25000021\">10.4153/s0008414x25000021</a>"},"date_created":"2025-02-10T08:39:46Z","type":"journal_article","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"06","title":"On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7","isi":1,"scopus_import":"1","date_published":"2025-01-06T00:00:00Z","department":[{"_id":"MaKw"}],"status":"public","_id":"19017","abstract":[{"text":"Let f(r)(n;s,k) denote the maximum number of edges in an n-vertex r-uniform hypergraph containing no subgraph with k edges and at most s vertices. Brown, Erdős and Sós [New directions in the theory of graphs (Proc. Third Ann Arbor Conf., Univ. Michigan 1971), pp. 53--63, Academic Press 1973] conjectured that the limit limn→∞n−2f(3)(n;k+2,k) exists for all k. The value of the limit was previously determined for k=2 in the original paper of Brown, Erdős and Sós, for k=3 by Glock [Bull. Lond. Math. Soc. 51 (2019) 230--236] and for k=4 by Glock, Joos, Kim, Kühn, Lichev and Pikhurko [arXiv:2209.14177, accepted by Proc. Amer. Math. Soc.] while Delcourt and Postle [arXiv:2210.01105, accepted by Proc. Amer. Math. Soc.] proved the conjecture (without determining the limiting value).\r\nIn this paper, we determine the value of the limit in the Brown-Erdős-Sós Problem for k∈{5,6,7}. More generally, we obtain the value of limn→∞n−2f(r)(n;rk−2k+2,k) for all r≥3 and k∈{5,6,7}. In addition, by combining these new values with recent results of Bennett, Cushman and Dudek [arXiv:2309.00182] we obtain new asymptotic values for several generalised Ramsey numbers.","lang":"eng"}],"has_accepted_license":"1","external_id":{"arxiv":["2403.04474"],"isi":["001416788600001"]},"main_file_link":[{"url":"https://doi.org/10.4153/s0008414x25000021","open_access":"1"}],"page":"1-43","year":"2025","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication":"Canadian Journal of Mathematics","publisher":"Cambridge University Press","oa_version":"Published Version","date_updated":"2025-09-30T10:28:07Z","quality_controlled":"1","OA_place":"publisher","doi":"10.4153/s0008414x25000021","article_processing_charge":"No","arxiv":1,"fulldoi":"https://doi.org/10.4153/s0008414x25000021","publication_identifier":{"eissn":["1496-4279"],"issn":["0008-414X"]},"oa":1,"author":[{"full_name":"Glock, Stefan","last_name":"Glock","first_name":"Stefan"},{"last_name":"Kim","first_name":"Jaehoon","full_name":"Kim, Jaehoon"},{"id":"9aa8388e-d003-11ee-8458-c4c1d7447977","last_name":"Lichev","first_name":"Lyuben","full_name":"Lichev, Lyuben"},{"last_name":"Pikhurko","first_name":"Oleg","full_name":"Pikhurko, Oleg"},{"first_name":"Shumin","last_name":"Sun","full_name":"Sun, Shumin"}],"language":[{"iso":"eng"}],"publication_status":"epub_ahead","article_type":"original","month":"01","ddc":["500"],"OA_type":"hybrid"},{"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2204.07376","open_access":"1"}],"volume":126,"external_id":{"isi":["001420659400001"],"arxiv":["2204.07376 "]},"year":"2025","publication":"European Journal of Combinatorics","publisher":"Elsevier","date_updated":"2025-09-30T10:28:42Z","OA_place":"repository","quality_controlled":"1","oa_version":"Preprint","doi":"10.1016/j.ejc.2025.104120","publication_identifier":{"issn":["0195-6698"]},"oa":1,"fulldoi":"https://doi.org/10.1016/j.ejc.2025.104120","arxiv":1,"article_processing_charge":"No","language":[{"iso":"eng"}],"author":[{"full_name":"Burova, Sofiya","last_name":"Burova","first_name":"Sofiya"},{"full_name":"Lichev, Lyuben","id":"9aa8388e-d003-11ee-8458-c4c1d7447977","last_name":"Lichev","first_name":"Lyuben"}],"OA_type":"green","publication_status":"published","intvolume":"       126","article_type":"original","month":"05","citation":{"short":"S. Burova, L. Lichev, European Journal of Combinatorics 126 (2025).","ieee":"S. Burova and L. Lichev, “The semi-random tree process,” <i>European Journal of Combinatorics</i>, vol. 126. Elsevier, 2025.","apa":"Burova, S., &#38; Lichev, L. (2025). The semi-random tree process. <i>European Journal of Combinatorics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">https://doi.org/10.1016/j.ejc.2025.104120</a>","mla":"Burova, Sofiya, and Lyuben Lichev. “The Semi-Random Tree Process.” <i>European Journal of Combinatorics</i>, vol. 126, 104120, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">10.1016/j.ejc.2025.104120</a>.","ista":"Burova S, Lichev L. 2025. The semi-random tree process. European Journal of Combinatorics. 126, 104120.","ama":"Burova S, Lichev L. The semi-random tree process. <i>European Journal of Combinatorics</i>. 2025;126. doi:<a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">10.1016/j.ejc.2025.104120</a>","chicago":"Burova, Sofiya, and Lyuben Lichev. “The Semi-Random Tree Process.” <i>European Journal of Combinatorics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.ejc.2025.104120\">https://doi.org/10.1016/j.ejc.2025.104120</a>."},"date_created":"2025-02-10T09:00:53Z","type":"journal_article","title":"The semi-random tree process","day":"01","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","isi":1,"department":[{"_id":"MaKw"}],"date_published":"2025-05-01T00:00:00Z","status":"public","article_number":"104120","abstract":[{"text":"The online semi-random graph process is a one-player game which starts with the empty graph on n vertices. At every round, a player (called Builder) is presented with a vertex v chosen uniformly at random and independently from previous rounds, and constructs an edge of their choice that is incident to v. Inspired by recent advances on the semi-random graph process, we define a family of generalized online semi-random models.\r\nWe analyse a particular instance that shares similar features with the original semi-random graph process and determine the hitting times of the classical graph properties minimum degree k,k-connectivity, containment of a perfect matching, a Hamiltonian cycle and an \r\nH-factor for a fixed graph H possessing an additional tree-like property. Along the way, we derive a few consequences of the famous Aldous-Broder algorithm that may be of independent interest.","lang":"eng"}],"_id":"19018","acknowledgement":"We are grateful to Dieter Mitsche for related discussions and to several anonymous referees for multiple useful comments."},{"article_number":"14","status":"public","date_published":"2025-01-25T00:00:00Z","department":[{"_id":"MaRo"}],"acknowledgement":"Generation Scotland: Generation Scotland received core support from the Chief Scientist Office of the Scottish Government Health Directorates (CZD/16/6) and the Scottish Funding Council (HR03006). Genotyping and DNA methylation profiling of the Generation Scotland samples were carried out by the Genetics Core Laboratory at the Edinburgh Clinical Research Facility, Edinburgh, Scotland, and were funded by the Medical Research Council UK and the Wellcome Trust (Wellcome Trust Strategic Award STratifying Resilience and Depression Longitudinally (STRADL; Reference 104036/Z/14/Z) and 220857/Z/20/Z. The DNA methylation data assayed for Generation Scotland were partially funded by a 2018 NARSAD Young Investigator Grant from the Brain & Behavior Research Foundation (Ref: 27404; awardee: Dr David M Howard) and by a JMAS SIM fellowship from the Royal College of Physicians of Edinburgh (Awardee: Dr Heather C Whalley). Lothian Birth Cohorts: We thank the LBC1921 and LBC1936 participants and team members who contributed to these studies. The LBC1921 was supported by the UK’s Biotechnology and Biological Sciences Research Council (BBSRC), The Royal Society, and The Chief Scientist Office of the Scottish Government. The LBC1936 is supported by the BBSRC, and the Economic and Social Research Council [BB/W008793/1] (which supports S.E.H.), Age UK (Disconnected Mind project), the Milton Damerel Trust, the Medical Research Council (MR/M01311/1), and the University of Edinburgh. Methylation typing of LBC1936 was supported by the Centre for Cognitive Ageing and Cognitive Epidemiology (Pilot Fund award), Age UK, The Wellcome Trust Institutional Strategic Support Fund, The University of Edinburgh, and The University of Queensland. Genotyping was funded by the BBSRC (BB/F019394/1). S.R.C. is supported by a Sir Henry Dale Fellowship jointly funded by the Wellcome Trust and the Royal Society (Grant Number 221890/Z/20/Z). ALSPAC: The UK Medical Research Council and Wellcome (Grant ref: 217065/Z/19/Z) and the University of Bristol provide core support for ALSPAC. This publication is the work of the authors and Matthew Suderman will serve as guarantors for the contents of this paper. A comprehensive list of grants funding is available on the ALSPAC website (http://www.bristol.ac.uk/alspac/external/documents/grant-acknowledgements.pdf). Funding for ALSPAC DNAm measurements was supported by the Wellcome (102215/2/13/2); the University of Bristol; the UK Economic and Social Research Council (ES/N000498/1); the UK Medical Research Council (MC_UU_12013/1, MC_UU_12013/2); and the John Templeton Foundation (60828). MS and PY work within the MRC Integrative Epidemiology Unit at the University of Bristol, which is supported by the Medical Research Council (MC_UU_00011/5). Sister Study: This research was supported by the Intramural Research Program of the National Institutes of Health (Z01-ES049033, Z01-ES049032, Z01-ES044005). A.D.C. was supported by a Medical Research Council PhD Studentship in Precision Medicine with funding from the Medical Research Council Doctoral Training Program and the University of Edinburgh College of Medicine and Veterinary Medicine. R.F.H is supported by an MRC IEU Fellowship. M.R.R. was funded by Swiss National Science Foundation Eccellenza Grant PCEGP3-181181 and by core funding from the Institute of Science and Technology Austria. E.B. and R.E.M. are supported by Alzheimer’s Society major project grant AS-PG-19b-010. This research was funded in whole, or in part, by the Wellcome Trust (104036/Z/14/Z, 220857/Z/20/Z, and 221890/Z/20/Z). For the purpose of open access, the author has applied a CC BY public copyright licence to any Author Accepted Manuscript version arising from this submission.","file_date_updated":"2025-02-17T08:44:23Z","DOAJ_listed":"1","has_accepted_license":"1","_id":"19023","abstract":[{"text":"Alcohol consumption is an important risk factor for multiple diseases. It is typically assessed via self-report, which is open to measurement error through recall bias. Instead, molecular data such as blood-based DNA methylation (DNAm) could be used to derive a more objective measure of alcohol consumption by incorporating information from cytosine-phosphate-guanine (CpG) sites known to be linked to the trait. Here, we explore the epigenetic architecture of self-reported weekly units of alcohol consumption in the Generation Scotland study. We first create a blood-based epigenetic score (EpiScore) of alcohol consumption using elastic net penalized linear regression. We explore the effect of pre-filtering for CpG features ahead of elastic net, as well as differential patterns by sex and by units consumed in the last week relative to an average week. The final EpiScore was trained on 16,717 individuals and tested in four external cohorts: the Lothian Birth Cohorts (LBC) of 1921 and 1936, the Sister Study, and the Avon Longitudinal Study of Parents and Children (total N across studies > 10,000). The maximum Pearson correlation between the EpiScore and self-reported alcohol consumption within cohort ranged from 0.41 to 0.53. In LBC1936, higher EpiScore levels had significant associations with poorer global brain imaging metrics, whereas self-reported alcohol consumption did not. Finally, we identified two novel CpG loci via a Bayesian penalized regression epigenome-wide association study of alcohol consumption. Together, these findings show how DNAm can objectively characterize patterns of alcohol consumption that associate with brain health, unlike self-reported estimates.","lang":"eng"}],"type":"journal_article","date_created":"2025-02-16T23:02:33Z","citation":{"ista":"Bernabeu E, Chybowska AD, Kresovich JK, Suderman M, Mccartney DL, Hillary RF, Corley J, Valdés-Hernández MDC, Maniega SM, Bastin ME, Wardlaw JM, Xu Z, Sandler DP, Campbell A, Harris SE, Mcintosh AM, Taylor JA, Yousefi P, Cox SR, Evans KL, Robinson MR, Vallejos CA, Marioni RE. 2025. Blood-based epigenome-wide association study and prediction of alcohol consumption. Clinical Epigenetics. 17, 14.","ama":"Bernabeu E, Chybowska AD, Kresovich JK, et al. Blood-based epigenome-wide association study and prediction of alcohol consumption. <i>Clinical Epigenetics</i>. 2025;17. doi:<a href=\"https://doi.org/10.1186/s13148-025-01818-y\">10.1186/s13148-025-01818-y</a>","chicago":"Bernabeu, Elena, Aleksandra D. Chybowska, Jacob K. Kresovich, Matthew Suderman, Daniel L. Mccartney, Robert F. Hillary, Janie Corley, et al. “Blood-Based Epigenome-Wide Association Study and Prediction of Alcohol Consumption.” <i>Clinical Epigenetics</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1186/s13148-025-01818-y\">https://doi.org/10.1186/s13148-025-01818-y</a>.","mla":"Bernabeu, Elena, et al. “Blood-Based Epigenome-Wide Association Study and Prediction of Alcohol Consumption.” <i>Clinical Epigenetics</i>, vol. 17, 14, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1186/s13148-025-01818-y\">10.1186/s13148-025-01818-y</a>.","short":"E. Bernabeu, A.D. Chybowska, J.K. Kresovich, M. Suderman, D.L. Mccartney, R.F. Hillary, J. Corley, M.D.C. Valdés-Hernández, S.M. Maniega, M.E. Bastin, J.M. Wardlaw, Z. Xu, D.P. Sandler, A. Campbell, S.E. Harris, A.M. Mcintosh, J.A. Taylor, P. Yousefi, S.R. Cox, K.L. Evans, M.R. Robinson, C.A. Vallejos, R.E. Marioni, Clinical Epigenetics 17 (2025).","apa":"Bernabeu, E., Chybowska, A. D., Kresovich, J. K., Suderman, M., Mccartney, D. L., Hillary, R. F., … Marioni, R. E. (2025). Blood-based epigenome-wide association study and prediction of alcohol consumption. <i>Clinical Epigenetics</i>. Springer Nature. <a href=\"https://doi.org/10.1186/s13148-025-01818-y\">https://doi.org/10.1186/s13148-025-01818-y</a>","ieee":"E. Bernabeu <i>et al.</i>, “Blood-based epigenome-wide association study and prediction of alcohol consumption,” <i>Clinical Epigenetics</i>, vol. 17. Springer Nature, 2025."},"isi":1,"scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"25","title":"Blood-based epigenome-wide association study and prediction of alcohol consumption","article_processing_charge":"Yes","fulldoi":"https://doi.org/10.1186/s13148-025-01818-y","publication_identifier":{"issn":["1868-7075"],"eissn":["1868-7083"]},"oa":1,"pmid":1,"doi":"10.1186/s13148-025-01818-y","article_type":"original","month":"01","publication_status":"published","intvolume":"        17","ddc":["570"],"OA_type":"gold","author":[{"first_name":"Elena","last_name":"Bernabeu","full_name":"Bernabeu, Elena"},{"last_name":"Chybowska","first_name":"Aleksandra D.","full_name":"Chybowska, Aleksandra D."},{"last_name":"Kresovich","first_name":"Jacob K.","full_name":"Kresovich, Jacob K."},{"full_name":"Suderman, Matthew","last_name":"Suderman","first_name":"Matthew"},{"full_name":"Mccartney, Daniel L.","last_name":"Mccartney","first_name":"Daniel L."},{"last_name":"Hillary","first_name":"Robert F.","full_name":"Hillary, Robert F."},{"first_name":"Janie","last_name":"Corley","full_name":"Corley, Janie"},{"first_name":"Maria Del C.","last_name":"Valdés-Hernández","full_name":"Valdés-Hernández, Maria Del C."},{"first_name":"Susana Muñoz","last_name":"Maniega","full_name":"Maniega, Susana Muñoz"},{"last_name":"Bastin","first_name":"Mark E.","full_name":"Bastin, Mark E."},{"first_name":"Joanna M.","last_name":"Wardlaw","full_name":"Wardlaw, Joanna M."},{"first_name":"Zongli","last_name":"Xu","full_name":"Xu, Zongli"},{"full_name":"Sandler, Dale P.","first_name":"Dale P.","last_name":"Sandler"},{"full_name":"Campbell, Archie","last_name":"Campbell","first_name":"Archie"},{"first_name":"Sarah E.","last_name":"Harris","full_name":"Harris, Sarah E."},{"last_name":"Mcintosh","first_name":"Andrew M.","full_name":"Mcintosh, Andrew M."},{"last_name":"Taylor","first_name":"Jack A.","full_name":"Taylor, Jack A."},{"last_name":"Yousefi","first_name":"Paul","full_name":"Yousefi, Paul"},{"full_name":"Cox, Simon R.","last_name":"Cox","first_name":"Simon R."},{"first_name":"Kathryn L.","last_name":"Evans","full_name":"Evans, Kathryn L."},{"orcid":"0000-0001-8982-8813","last_name":"Robinson","first_name":"Matthew Richard","id":"E5D42276-F5DA-11E9-8E24-6303E6697425","full_name":"Robinson, Matthew Richard"},{"full_name":"Vallejos, Catalina A.","last_name":"Vallejos","first_name":"Catalina A."},{"full_name":"Marioni, Riccardo E.","first_name":"Riccardo E.","last_name":"Marioni"}],"language":[{"iso":"eng"}],"project":[{"grant_number":"PCEGP3_181181","name":"Improving estimation and prediction of common complex disease risk","_id":"9B8D11D6-BA93-11EA-9121-9846C619BF3A"}],"year":"2025","file":[{"file_name":"2025_ClinicalEpigenetics_Bernabeu.pdf","content_type":"application/pdf","creator":"dernst","relation":"main_file","access_level":"open_access","date_created":"2025-02-17T08:44:23Z","date_updated":"2025-02-17T08:44:23Z","success":1,"file_id":"19030","checksum":"c32511f2d09e6c164116793e784944b8","file_size":1170930}],"volume":17,"external_id":{"pmid":["39863868"],"isi":["001406495600001"]},"oa_version":"Published Version","date_updated":"2025-09-30T10:31:08Z","quality_controlled":"1","OA_place":"publisher","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publisher":"Springer Nature","publication":"Clinical Epigenetics"},{"oa_version":"Published Version","OA_place":"publisher","quality_controlled":"1","date_updated":"2025-09-30T10:31:45Z","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publisher":"Elsevier","related_material":{"record":[{"status":"public","relation":"research_data","id":"19033"}]},"publication":"Journal of Colloid and Interface Science","year":"2025","external_id":{"isi":["001426125300001"],"pmid":["39933351"],"arxiv":["2311.16906"]},"file":[{"success":1,"checksum":"a52b72a243a717d85c348f53898ad934","file_id":"20128","file_size":4212615,"date_updated":"2025-08-05T12:07:24Z","date_created":"2025-08-05T12:07:24Z","file_name":"2025_JourColloidScie_Scacchi.pdf","content_type":"application/pdf","creator":"dernst","relation":"main_file","access_level":"open_access"}],"page":"1135-1146","volume":686,"ddc":["540"],"month":"05","intvolume":"       686","article_type":"original","publication_status":"published","OA_type":"hybrid","author":[{"full_name":"Scacchi, Alberto","first_name":"Alberto","last_name":"Scacchi"},{"id":"c5df3b62-5f9e-11ef-ba3c-b97f5b5b5ef0","last_name":"Rigoni","first_name":"Carlo","full_name":"Rigoni, Carlo"},{"first_name":"Mikko","last_name":"Haataja","full_name":"Haataja, Mikko"},{"last_name":"Timonen","first_name":"Jaakko V.I.","full_name":"Timonen, Jaakko V.I."},{"last_name":"Sammalkorpi","first_name":"Maria","full_name":"Sammalkorpi, Maria"}],"language":[{"iso":"eng"}],"arxiv":1,"article_processing_charge":"Yes (in subscription journal)","fulldoi":"https://doi.org/10.1016/j.jcis.2025.01.256","publication_identifier":{"eissn":["1095-7103"],"issn":["0021-9797"],"issnl":["0021-9797"]},"oa":1,"PlanS_conform":"1","pmid":1,"doi":"10.1016/j.jcis.2025.01.256","isi":1,"scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","day":"15","title":"A coarse-grained model for aqueous two-phase systems: Application to ferrofluids","type":"journal_article","date_created":"2025-02-16T23:02:33Z","citation":{"ista":"Scacchi A, Rigoni C, Haataja M, Timonen JVI, Sammalkorpi M. 2025. A coarse-grained model for aqueous two-phase systems: Application to ferrofluids. Journal of Colloid and Interface Science. 686, 1135–1146.","ama":"Scacchi A, Rigoni C, Haataja M, Timonen JVI, Sammalkorpi M. A coarse-grained model for aqueous two-phase systems: Application to ferrofluids. <i>Journal of Colloid and Interface Science</i>. 2025;686:1135-1146. doi:<a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">10.1016/j.jcis.2025.01.256</a>","chicago":"Scacchi, Alberto, Carlo Rigoni, Mikko Haataja, Jaakko V.I. Timonen, and Maria Sammalkorpi. “A Coarse-Grained Model for Aqueous Two-Phase Systems: Application to Ferrofluids.” <i>Journal of Colloid and Interface Science</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">https://doi.org/10.1016/j.jcis.2025.01.256</a>.","mla":"Scacchi, Alberto, et al. “A Coarse-Grained Model for Aqueous Two-Phase Systems: Application to Ferrofluids.” <i>Journal of Colloid and Interface Science</i>, vol. 686, Elsevier, 2025, pp. 1135–46, doi:<a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">10.1016/j.jcis.2025.01.256</a>.","apa":"Scacchi, A., Rigoni, C., Haataja, M., Timonen, J. V. I., &#38; Sammalkorpi, M. (2025). A coarse-grained model for aqueous two-phase systems: Application to ferrofluids. <i>Journal of Colloid and Interface Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcis.2025.01.256\">https://doi.org/10.1016/j.jcis.2025.01.256</a>","short":"A. Scacchi, C. Rigoni, M. Haataja, J.V.I. Timonen, M. Sammalkorpi, Journal of Colloid and Interface Science 686 (2025) 1135–1146.","ieee":"A. Scacchi, C. Rigoni, M. Haataja, J. V. I. Timonen, and M. Sammalkorpi, “A coarse-grained model for aqueous two-phase systems: Application to ferrofluids,” <i>Journal of Colloid and Interface Science</i>, vol. 686. Elsevier, pp. 1135–1146, 2025."},"acknowledgement":"This work was supported by the Swiss National Science Foundation under the project no. P500PT_206916 (A.S.) and the Academy of Finland through its Centres of Excellence Programs (2022-2029, LIBER) under projects no. 346111 and 364205 (M.S.) and 346112 and 364206 (J.T.). MPH was supported by the National Science Foundation through the Princeton University (PCCM) Materials Research Science and Engineering Center DMR-2011750. A.S. warmly thanks Bob Evans for extensive scientific discussions and for his hospitality during the research visit in Bristol. Computational resources by CSC IT Centre for Finland, the Aalto Science-IT project, and RAMI – RawMatters Finland Infrastructure are also gratefully acknowledged.","has_accepted_license":"1","file_date_updated":"2025-08-05T12:07:24Z","abstract":[{"text":"Aqueous two-phase systems (ATPSs), phase-separating solutions of water soluble but mutually immiscible molecular species, offer fascinating prospects for selective partitioning, purification, and extraction. Here, we formulate a general Brownian dynamics based coarse-grained simulation model for an ATPS of two water soluble but mutually immiscible polymer species. Including additional solute species into the model is straightforward, which enables capturing the assembly and partitioning response of, e.g., nanoparticles (NPs), additional macromolecular species, or impurities in the ATPS. We demonstrate that the simulation model captures satisfactorily the phase separation, partitioning, and interfacial properties of an actual ATPS using a model ATPS in which a polymer mixture of dextran and polyethylene glycol (PEG) phase separates, and magnetic NPs selectively partition into one of the two polymeric phases. Phase separation and NP partitioning are characterized both via the computational model and experimentally, under different conditions. The simulation model captures the trends observed in the experimental system and quantitatively links the partitioning behavior to the component species interactions. Finally, the simulation model reveals that the ATPS interface fluctuations in systems with magnetic NPs as a partitioned species can be controlled by the magnetic field at length scales much smaller than those probed experimentally to date.","lang":"eng"}],"_id":"19024","status":"public","date_published":"2025-05-15T00:00:00Z","department":[{"_id":"RaKl"}]},{"abstract":[{"text":"The back-action damping of mechanical motion by electromagnetic radiation is typically overwhelmed by internal loss channels unless demanding experimental ingredients such as superconducting resonators, high-quality optical cavities, or large magnetic fields are employed. Here we demonstrate the first room temperature, cavity-free, all-electric device where back-action damping exceeds internal loss, enabled by a mechanically compliant parallel-plate capacitor with a nanoscale plate separation and an aspect ratio exceeding 1,000. The device has 4 orders of magnitude lower insertion loss than a comparable commercial quartz crystal and achieves a position imprecision rivaling optical interferometers. With the help of a back-action isolation scheme, we observe radiative cooling of mechanical motion by a remote cryogenic load. This work provides a technologically accessible route to high-precision sensing, transduction, and signal processing.","lang":"eng"}],"_id":"19026","acknowledgement":"We thank Carissa Kumar and Vibha Padmanabhan for assistance in comparing performance with devices across the literature. We thank Andrew Cleland for helpful comments on this work. We are grateful for support from the Miba Machine Shop and Nanofabrication facility at IST Austria. This work was supported by the Austrian FWF grant P33692–N and includes a recipient of a DOC Fellowship of the Austrian Academy of Sciences (DOC – No. 26088) at the Institute of Science and Technology, Austria.","department":[{"_id":"AnHi"}],"date_published":"2025-02-06T00:00:00Z","status":"public","title":"Room temperature, cavity-free capacitive strong coupling to mechanical motion","day":"06","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","isi":1,"issue":"7","citation":{"ama":"Puglia D, Odessey RH, Burns P, Luhmann N, Schmid S, Higginbotham AP. Room temperature, cavity-free capacitive strong coupling to mechanical motion. <i>Nano Letters</i>. 2025;25(7):2749-2755. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.4c05796\">10.1021/acs.nanolett.4c05796</a>","chicago":"Puglia, Denise, Rachel H Odessey, Peter Burns, Niklas Luhmann, Silvan Schmid, and Andrew P Higginbotham. “Room Temperature, Cavity-Free Capacitive Strong Coupling to Mechanical Motion.” <i>Nano Letters</i>. American Chemical Society, 2025. <a href=\"https://doi.org/10.1021/acs.nanolett.4c05796\">https://doi.org/10.1021/acs.nanolett.4c05796</a>.","ista":"Puglia D, Odessey RH, Burns P, Luhmann N, Schmid S, Higginbotham AP. 2025. Room temperature, cavity-free capacitive strong coupling to mechanical motion. Nano Letters. 25(7), 2749–2755.","mla":"Puglia, Denise, et al. “Room Temperature, Cavity-Free Capacitive Strong Coupling to Mechanical Motion.” <i>Nano Letters</i>, vol. 25, no. 7, American Chemical Society, 2025, pp. 2749–55, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.4c05796\">10.1021/acs.nanolett.4c05796</a>.","apa":"Puglia, D., Odessey, R. H., Burns, P., Luhmann, N., Schmid, S., &#38; Higginbotham, A. P. (2025). Room temperature, cavity-free capacitive strong coupling to mechanical motion. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.4c05796\">https://doi.org/10.1021/acs.nanolett.4c05796</a>","short":"D. Puglia, R.H. Odessey, P. Burns, N. Luhmann, S. Schmid, A.P. Higginbotham, Nano Letters 25 (2025) 2749–2755.","ieee":"D. Puglia, R. H. Odessey, P. Burns, N. Luhmann, S. Schmid, and A. P. Higginbotham, “Room temperature, cavity-free capacitive strong coupling to mechanical motion,” <i>Nano Letters</i>, vol. 25, no. 7. American Chemical Society, pp. 2749–2755, 2025."},"date_created":"2025-02-16T23:02:34Z","type":"journal_article","project":[{"grant_number":"P33692","name":"Cavity electromechanics across a quantum phase transition","_id":"0aa3608a-070f-11eb-9043-e9cd8a2bd931"},{"grant_number":"26088","name":"Surface Charge and Tunneling Multi-Mode Imaging","_id":"62843413-2b32-11ec-9570-c4ec6eabfae7"}],"language":[{"iso":"eng"}],"author":[{"full_name":"Puglia, Denise","orcid":"0000-0003-1144-2763","last_name":"Puglia","first_name":"Denise","id":"4D495994-AE37-11E9-AC72-31CAE5697425"},{"full_name":"Odessey, Rachel H","id":"9a7a5123-8972-11ed-ae7b-dd1f2af457bd","last_name":"Odessey","first_name":"Rachel H"},{"full_name":"Burns, Peter","last_name":"Burns","first_name":"Peter"},{"first_name":"Niklas","last_name":"Luhmann","full_name":"Luhmann, Niklas"},{"full_name":"Schmid, Silvan","last_name":"Schmid","first_name":"Silvan"},{"id":"4AD6785A-F248-11E8-B48F-1D18A9856A87","first_name":"Andrew P","last_name":"Higginbotham","orcid":"0000-0003-2607-2363","full_name":"Higginbotham, Andrew P"}],"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"OA_type":"green","publication_status":"published","article_type":"original","month":"02","intvolume":"        25","doi":"10.1021/acs.nanolett.4c05796","publication_identifier":{"issn":["1530-6984"],"eissn":["1530-6992"]},"oa":1,"corr_author":"1","fulldoi":"https://doi.org/10.1021/acs.nanolett.4c05796","article_processing_charge":"No","arxiv":1,"publisher":"American Chemical Society","publication":"Nano Letters","related_material":{"record":[{"relation":"earlier_version","id":"18143","status":"public"}]},"date_updated":"2025-09-30T10:29:58Z","quality_controlled":"1","OA_place":"repository","oa_version":"Preprint","page":"2749-2755","external_id":{"isi":["001415246000001"],"arxiv":["2407.15314"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2407.15314"}],"volume":25,"year":"2025"},{"oa":1,"publication_identifier":{"eissn":["1095-7170"],"issn":["0036-1429"]},"article_processing_charge":"Yes (in subscription journal)","arxiv":1,"fulldoi":"https://doi.org/10.1137/23M1617345","corr_author":"1","doi":"10.1137/23M1617345","month":"02","ddc":["510"],"publication_status":"published","intvolume":"        63","article_type":"original","OA_type":"hybrid","language":[{"iso":"eng"}],"project":[{"grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"}],"author":[{"id":"2CEB641C-A400-11E9-A717-D712E6697425","last_name":"Cornalba","first_name":"Federico","orcid":"0000-0002-6269-5149","full_name":"Cornalba, Federico"},{"id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0479-558X","last_name":"Fischer","first_name":"Julian L","full_name":"Fischer, Julian L"}],"year":"2025","file":[{"date_created":"2025-02-17T08:32:23Z","file_name":"2025_SIAMNumerAnaly_Cornalba.pdf","access_level":"open_access","creator":"dernst","relation":"main_file","content_type":"application/pdf","checksum":"53505647e848ed50f7e0d00c369b14e7","file_id":"19029","success":1,"file_size":2435019,"date_updated":"2025-02-17T08:32:23Z"}],"volume":63,"external_id":{"arxiv":["2311.08872"],"isi":["001447583400011"]},"page":"262-287","oa_version":"Published Version","date_updated":"2025-09-30T10:30:31Z","OA_place":"publisher","quality_controlled":"1","publication":"SIAM Journal on Numerical Analysis","publisher":"Society for Industrial and Applied Mathematics","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"status":"public","department":[{"_id":"JuFi"}],"date_published":"2025-02-01T00:00:00Z","has_accepted_license":"1","file_date_updated":"2025-02-17T08:32:23Z","acknowledgement":"The work of the authors was supported by the Austrian Science Fund (FWF) projectF65.","_id":"19027","abstract":[{"text":"Stochastic PDEs of fluctuating hydrodynamics are a powerful tool for the description of fluctuations in many-particle systems. In this paper, we develop and analyze a multilevel Monte Carlo (MLMC) scheme for the Dean–Kawasaki equation, a pivotal representative of this class of SPDEs. We prove analytically and demonstrate numerically that our MLMC scheme provides a significant reduction in computational cost (with respect to a standard Monte Carlo method) in the simulation of the Dean–Kawasaki equation. Specifically, we link this reduction in cost to having a sufficiently large average particle density and show that sizeable cost reductions can be obtained even when we have solutions with regions of low density. Numerical simulations are provided in the two-dimensional case, confirming our theoretical predictions. Our results are formulated entirely in terms of the law of distributions rather than in terms of strong spatial norms: this crucially allows for MLMC speed-ups altogether despite the Dean–Kawasaki equation being highly singular.","lang":"eng"}],"type":"journal_article","citation":{"ista":"Cornalba F, Fischer JL. 2025. Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics. SIAM Journal on Numerical Analysis. 63(1), 262–287.","chicago":"Cornalba, Federico, and Julian L Fischer. “Multilevel Monte Carlo Methods for the Dean–Kawasaki Equation from Fluctuating Hydrodynamics.” <i>SIAM Journal on Numerical Analysis</i>. Society for Industrial and Applied Mathematics, 2025. <a href=\"https://doi.org/10.1137/23M1617345\">https://doi.org/10.1137/23M1617345</a>.","ama":"Cornalba F, Fischer JL. Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics. <i>SIAM Journal on Numerical Analysis</i>. 2025;63(1):262-287. doi:<a href=\"https://doi.org/10.1137/23M1617345\">10.1137/23M1617345</a>","ieee":"F. Cornalba and J. L. Fischer, “Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics,” <i>SIAM Journal on Numerical Analysis</i>, vol. 63, no. 1. Society for Industrial and Applied Mathematics, pp. 262–287, 2025.","short":"F. Cornalba, J.L. Fischer, SIAM Journal on Numerical Analysis 63 (2025) 262–287.","apa":"Cornalba, F., &#38; Fischer, J. L. (2025). Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics. <i>SIAM Journal on Numerical Analysis</i>. Society for Industrial and Applied Mathematics. <a href=\"https://doi.org/10.1137/23M1617345\">https://doi.org/10.1137/23M1617345</a>","mla":"Cornalba, Federico, and Julian L. Fischer. “Multilevel Monte Carlo Methods for the Dean–Kawasaki Equation from Fluctuating Hydrodynamics.” <i>SIAM Journal on Numerical Analysis</i>, vol. 63, no. 1, Society for Industrial and Applied Mathematics, 2025, pp. 262–87, doi:<a href=\"https://doi.org/10.1137/23M1617345\">10.1137/23M1617345</a>."},"date_created":"2025-02-16T23:02:34Z","isi":1,"scopus_import":"1","issue":"1","day":"01","title":"Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating hydrodynamics","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"type":"research_data_reference","year":"2025","citation":{"ista":"Scacchi A. 2025. 2025_SCACCHI_JCIS, Fairdata, <a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>.","ama":"Scacchi A. 2025_SCACCHI_JCIS. 2025. doi:<a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>","chicago":"Scacchi, Alberto. “2025_SCACCHI_JCIS.” Fairdata, 2025. <a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>.","mla":"Scacchi, Alberto. <i>2025_SCACCHI_JCIS</i>. Fairdata, 2025, doi:<a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>.","short":"A. Scacchi, (2025).","apa":"Scacchi, A. (2025). 2025_SCACCHI_JCIS. Fairdata. <a href=\"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1\">https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1</a>","ieee":"A. Scacchi, “2025_SCACCHI_JCIS.” Fairdata, 2025."},"date_created":"2025-02-17T09:00:36Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1"}],"OA_place":"publisher","date_updated":"2025-09-30T10:31:44Z","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"title":"2025_SCACCHI_JCIS","day":"05","publisher":"Fairdata","related_material":{"record":[{"status":"public","id":"19024","relation":"used_in_publication"}]},"fulldoi":"https://doi.org/10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1","article_processing_charge":"No","status":"public","oa":1,"doi":"10.23729/4fb80194-cdb2-4f49-94f4-f8a87b8e29c1","date_published":"2025-02-05T00:00:00Z","department":[{"_id":"RaKl"}],"acknowledgement":"This work was supported by the Swiss National Science Foundation under the project no. P500PT_206916 (A.S.) and the Academy of Finland through its Centres of Excellence Programs (2022-2029, LIBER) under projects no. 346111 and 364205 (M.S.) and 346112 and 364206 (J.T.). MPH was supported by the National Science Foundation through the Princeton University (PCCM) Materials Research Science and Engineering Center DMR-2011750. A.S. warmly thanks Bob Evans for extensive scientific discussions and for his hospitality during the research visit in Bristol. Computational resources by CSC IT Centre for Finland, the Aalto Science-IT project, and RAMI -- RawMatters Finland Infrastructure are also gratefully acknowledged.","contributor":[{"last_name":"Rigoni","first_name":"Carlo","id":"c5df3b62-5f9e-11ef-ba3c-b97f5b5b5ef0"},{"last_name":"Sammalkorpi","first_name":"Maria"},{"last_name":"Haataja","first_name":"Mikko"},{"last_name":"Timonen","first_name":"Jaakoo"}],"has_accepted_license":"1","month":"02","ddc":["530"],"author":[{"full_name":"Scacchi, Alberto","first_name":"Alberto","last_name":"Scacchi"}],"abstract":[{"lang":"eng","text":"This data set contains the simulation input files, scripts, and figures data belonging to the publication\r\n\r\nAlberto Scacchi, Carlo Rigoni, Mikko P. Haataja, Jakko V. I. Timonen, and Maria Sammalkorpi, \"A Coarse-grained Model for Aqueous Two-phase Systems: Application to Ferrofluids\", Journal of Colloids and Interface Science (2025). https://doi.org/10.1016/j.jcis.2025.01.256."}],"_id":"19033"}]