[{"type":"journal_article","citation":{"ieee":"G. Tkačik <i>et al.</i>, “Thermodynamics and signatures of criticality in a network of neurons,” <i>PNAS</i>, vol. 112, no. 37. National Academy of Sciences, pp. 11508–11513, 2015.","ama":"Tkačik G, Mora T, Marre O, et al. Thermodynamics and signatures of criticality in a network of neurons. <i>PNAS</i>. 2015;112(37):11508-11513. doi:<a href=\"https://doi.org/10.1073/pnas.1514188112\">10.1073/pnas.1514188112</a>","short":"G. Tkačik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.","mla":"Tkačik, Gašper, et al. “Thermodynamics and Signatures of Criticality in a Network of Neurons.” <i>PNAS</i>, vol. 112, no. 37, National Academy of Sciences, 2015, pp. 11508–13, doi:<a href=\"https://doi.org/10.1073/pnas.1514188112\">10.1073/pnas.1514188112</a>.","chicago":"Tkačik, Gašper, Thierry Mora, Olivier Marre, Dario Amodei, Stephanie Palmer, Michael Berry Ii, and William Bialek. “Thermodynamics and Signatures of Criticality in a Network of Neurons.” <i>PNAS</i>. National Academy of Sciences, 2015. <a href=\"https://doi.org/10.1073/pnas.1514188112\">https://doi.org/10.1073/pnas.1514188112</a>.","apa":"Tkačik, G., Mora, T., Marre, O., Amodei, D., Palmer, S., Berry Ii, M., &#38; Bialek, W. (2015). Thermodynamics and signatures of criticality in a network of neurons. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1514188112\">https://doi.org/10.1073/pnas.1514188112</a>","ista":"Tkačik G, Mora T, Marre O, Amodei D, Palmer S, Berry Ii M, Bialek W. 2015. Thermodynamics and signatures of criticality in a network of neurons. PNAS. 112(37), 11508–11513."},"volume":112,"intvolume":"       112","acknowledgement":"Research was supported in part by National Science Foundation Grants PHY-1305525, PHY-1451171, and CCF-0939370, by National Institutes of Health Grant R01 EY14196, and by Austrian Science Foundation Grant FWF P25651. Additional support was provided by the\r\nFannie and John Hertz Foundation, by the Swartz Foundation, by the W. M. Keck Foundation, and by the Simons Foundation.","publication":"PNAS","language":[{"iso":"eng"}],"quality_controlled":"1","doi":"10.1073/pnas.1514188112","day":"15","date_published":"2015-09-15T00:00:00Z","main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4577210/"}],"date_updated":"2025-09-23T14:54:27Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1701","year":"2015","month":"09","publist_id":"5440","external_id":{"pmid":["26330611"],"isi":["000361393700038"]},"abstract":[{"text":"The activity of a neural network is defined by patterns of spiking and silence from the individual neurons. Because spikes are (relatively) sparse, patterns of activity with increasing numbers of spikes are less probable, but, with more spikes, the number of possible patterns increases. This tradeoff between probability and numerosity is mathematically equivalent to the relationship between entropy and energy in statistical physics. We construct this relationship for populations of up to N = 160 neurons in a small patch of the vertebrate retina, using a combination of direct and model-based analyses of experiments on the response of this network to naturalistic movies. We see signs of a thermodynamic limit, where the entropy per neuron approaches a smooth function of the energy per neuron as N increases. The form of this function corresponds to the distribution of activity being poised near an unusual kind of critical point. We suggest further tests of criticality, and give a brief discussion of its functional significance. ","lang":"eng"}],"page":"11508 - 11513","pmid":1,"issue":"37","article_processing_charge":"No","title":"Thermodynamics and signatures of criticality in a network of neurons","oa_version":"Submitted Version","date_created":"2018-12-11T11:53:33Z","publication_status":"published","status":"public","oa":1,"scopus_import":"1","project":[{"_id":"254D1A94-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"P 25651-N26","name":"Sensitivity to higher-order statistics in natural scenes"}],"author":[{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gasper","last_name":"Tkacik","full_name":"Tkacik, Gasper","orcid":"0000-0002-6699-1455"},{"last_name":"Mora","first_name":"Thierry","full_name":"Mora, Thierry"},{"full_name":"Marre, Olivier","last_name":"Marre","first_name":"Olivier"},{"last_name":"Amodei","first_name":"Dario","full_name":"Amodei, Dario"},{"full_name":"Palmer, Stephanie","first_name":"Stephanie","last_name":"Palmer"},{"full_name":"Berry Ii, Michael","first_name":"Michael","last_name":"Berry Ii"},{"last_name":"Bialek","first_name":"William","full_name":"Bialek, William"}],"isi":1,"department":[{"_id":"GaTk"}],"publisher":"National Academy of Sciences"},{"scopus_import":"1","status":"public","isi":1,"department":[{"_id":"NiBa"}],"publisher":"CSIRO","author":[{"first_name":"Linda","last_name":"Broadhurst","full_name":"Broadhurst, Linda"},{"first_name":"Graham","last_name":"Fifield","full_name":"Fifield, Graham"},{"full_name":"Vanzella, Bindi","last_name":"Vanzella","first_name":"Bindi"},{"id":"2C78037E-F248-11E8-B48F-1D18A9856A87","first_name":"Melinda","last_name":"Pickup","full_name":"Pickup, Melinda","orcid":"0000-0001-6118-0541"}],"page":"455 - 466","external_id":{"isi":["000363276500009"]},"abstract":[{"lang":"eng","text":"Vegetation clearing and land-use change have depleted many natural plant communities to the point where restoration is required. A major impediment to the success of rebuilding complex vegetation communities is having regular access to sufficient quantities of high-quality seed. Seed-production areas (SPAs) can help generate this seed, but these must be underpinned by a broad genetic base to maximise the evolutionary potential of restored populations. However, genetic bottlenecks can occur at the collection, establishment and production stages in SPAs, requiring genetic evaluation. This is especially relevant for species that may take many years before a return on SPA investment is realised. Two recently established yellow box (Eucalyptus melliodora A.Cunn. ex Schauer, Myrtaceae) SPAs were evaluated to determine whether genetic bottlenecks had occurred between seed collection and SPA establishment. No evidence was found to suggest that a significant loss of genetic diversity had occurred at this stage, although there was a significant difference in diversity between the two SPAs. Complex population genetic structure was also observed in the seed used to source the SPAs, with up to eight groups identified. Plant survival in the SPAs was influenced by seed collection location but not by SPA location and was not associated with genetic diversity. There were also no associations between genetic diversity and plant growth. These data highlighted the importance of chance events when establishing SPAs and indicated that the two yellow box SPAs are likely to provide genetically diverse seed sources for future restoration projects, especially by pooling seed from both SPAs."}],"article_processing_charge":"No","title":"An evaluation of the genetic structure of seed sources and the maintenance of genetic diversity during establishment of two yellow box (Eucalyptus melliodora) seed-production areas","publication_status":"published","oa_version":"None","date_created":"2018-12-11T11:53:34Z","issue":"5","year":"2015","date_updated":"2025-09-23T07:51:07Z","_id":"1703","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publist_id":"5434","month":"05","publication":"Australian Journal of Botany","intvolume":"        63","quality_controlled":"1","language":[{"iso":"eng"}],"type":"journal_article","citation":{"ista":"Broadhurst L, Fifield G, Vanzella B, Pickup M. 2015. An evaluation of the genetic structure of seed sources and the maintenance of genetic diversity during establishment of two yellow box (Eucalyptus melliodora) seed-production areas. Australian Journal of Botany. 63(5), 455–466.","apa":"Broadhurst, L., Fifield, G., Vanzella, B., &#38; Pickup, M. (2015). An evaluation of the genetic structure of seed sources and the maintenance of genetic diversity during establishment of two yellow box (Eucalyptus melliodora) seed-production areas. <i>Australian Journal of Botany</i>. CSIRO. <a href=\"https://doi.org/10.1071/BT15023\">https://doi.org/10.1071/BT15023</a>","ama":"Broadhurst L, Fifield G, Vanzella B, Pickup M. An evaluation of the genetic structure of seed sources and the maintenance of genetic diversity during establishment of two yellow box (Eucalyptus melliodora) seed-production areas. <i>Australian Journal of Botany</i>. 2015;63(5):455-466. doi:<a href=\"https://doi.org/10.1071/BT15023\">10.1071/BT15023</a>","short":"L. Broadhurst, G. Fifield, B. Vanzella, M. Pickup, Australian Journal of Botany 63 (2015) 455–466.","mla":"Broadhurst, Linda, et al. “An Evaluation of the Genetic Structure of Seed Sources and the Maintenance of Genetic Diversity during Establishment of Two Yellow Box (Eucalyptus Melliodora) Seed-Production Areas.” <i>Australian Journal of Botany</i>, vol. 63, no. 5, CSIRO, 2015, pp. 455–66, doi:<a href=\"https://doi.org/10.1071/BT15023\">10.1071/BT15023</a>.","chicago":"Broadhurst, Linda, Graham Fifield, Bindi Vanzella, and Melinda Pickup. “An Evaluation of the Genetic Structure of Seed Sources and the Maintenance of Genetic Diversity during Establishment of Two Yellow Box (Eucalyptus Melliodora) Seed-Production Areas.” <i>Australian Journal of Botany</i>. CSIRO, 2015. <a href=\"https://doi.org/10.1071/BT15023\">https://doi.org/10.1071/BT15023</a>.","ieee":"L. Broadhurst, G. Fifield, B. Vanzella, and M. Pickup, “An evaluation of the genetic structure of seed sources and the maintenance of genetic diversity during establishment of two yellow box (Eucalyptus melliodora) seed-production areas,” <i>Australian Journal of Botany</i>, vol. 63, no. 5. CSIRO, pp. 455–466, 2015."},"volume":63,"day":"26","date_published":"2015-05-26T00:00:00Z","doi":"10.1071/BT15023"},{"doi":"10.1007/s11005-015-0787-5","day":"05","date_published":"2015-08-05T00:00:00Z","citation":{"ieee":"A. Deuchert, C. Hainzl, and R. Seiringer, “Note on a family of monotone quantum relative entropies,” <i>Letters in Mathematical Physics</i>, vol. 105, no. 10. Springer, pp. 1449–1466, 2015.","mla":"Deuchert, Andreas, et al. “Note on a Family of Monotone Quantum Relative Entropies.” <i>Letters in Mathematical Physics</i>, vol. 105, no. 10, Springer, 2015, pp. 1449–66, doi:<a href=\"https://doi.org/10.1007/s11005-015-0787-5\">10.1007/s11005-015-0787-5</a>.","chicago":"Deuchert, Andreas, Christian Hainzl, and Robert Seiringer. “Note on a Family of Monotone Quantum Relative Entropies.” <i>Letters in Mathematical Physics</i>. Springer, 2015. <a href=\"https://doi.org/10.1007/s11005-015-0787-5\">https://doi.org/10.1007/s11005-015-0787-5</a>.","ama":"Deuchert A, Hainzl C, Seiringer R. Note on a family of monotone quantum relative entropies. <i>Letters in Mathematical Physics</i>. 2015;105(10):1449-1466. doi:<a href=\"https://doi.org/10.1007/s11005-015-0787-5\">10.1007/s11005-015-0787-5</a>","short":"A. Deuchert, C. Hainzl, R. Seiringer, Letters in Mathematical Physics 105 (2015) 1449–1466.","apa":"Deuchert, A., Hainzl, C., &#38; Seiringer, R. (2015). Note on a family of monotone quantum relative entropies. <i>Letters in Mathematical Physics</i>. Springer. <a href=\"https://doi.org/10.1007/s11005-015-0787-5\">https://doi.org/10.1007/s11005-015-0787-5</a>","ista":"Deuchert A, Hainzl C, Seiringer R. 2015. Note on a family of monotone quantum relative entropies. Letters in Mathematical Physics. 105(10), 1449–1466."},"type":"journal_article","volume":105,"ddc":["510"],"publication":"Letters in Mathematical Physics","intvolume":"       105","quality_controlled":"1","language":[{"iso":"eng"}],"month":"08","publist_id":"5432","date_updated":"2025-09-23T09:41:03Z","_id":"1704","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2015","issue":"10","arxiv":1,"article_processing_charge":"No","title":"Note on a family of monotone quantum relative entropies","publication_status":"published","oa_version":"Preprint","date_created":"2018-12-11T11:53:34Z","page":"1449 - 1466","external_id":{"arxiv":["1502.07205"],"isi":["000361007600006"]},"abstract":[{"lang":"eng","text":"Given a convex function (Formula presented.) and two hermitian matrices A and B, Lewin and Sabin study in (Lett Math Phys 104:691–705, 2014) the relative entropy defined by (Formula presented.). Among other things, they prove that the so-defined quantity is monotone if and only if (Formula presented.) is operator monotone. The monotonicity is then used to properly define (Formula presented.) for bounded self-adjoint operators acting on an infinite-dimensional Hilbert space by a limiting procedure. More precisely, for an increasing sequence of finite-dimensional projections (Formula presented.) with (Formula presented.) strongly, the limit (Formula presented.) is shown to exist and to be independent of the sequence of projections (Formula presented.). The question whether this sequence converges to its &quot;obvious&quot; limit, namely (Formula presented.), has been left open. We answer this question in principle affirmatively and show that (Formula presented.). If the operators A and B are regular enough, that is (A − B), (Formula presented.) and (Formula presented.) are trace-class, the identity (Formula presented.) holds."}],"file":[{"date_updated":"2020-07-14T12:45:13Z","file_size":484967,"file_id":"5836","creator":"dernst","file_name":"2015_LettersMathPhys_Deuchert.pdf","relation":"main_file","content_type":"application/pdf","checksum":"fd7307282a314cc1fbbaef77b187516b","date_created":"2019-01-15T14:42:07Z","access_level":"open_access"}],"file_date_updated":"2020-07-14T12:45:13Z","author":[{"first_name":"Andreas","last_name":"Deuchert","full_name":"Deuchert, Andreas","orcid":"0000-0003-3146-6746"},{"full_name":"Hainzl, Christian","first_name":"Christian","last_name":"Hainzl"},{"orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert"}],"corr_author":"1","isi":1,"publisher":"Springer","department":[{"_id":"RoSe"}],"status":"public","has_accepted_license":"1","tmp":{"short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"scopus_import":"1","oa":1},{"ec_funded":1,"publist_id":"5430","month":"01","year":"2015","date_updated":"2025-09-23T09:36:51Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1706","day":"01","date_published":"2015-01-01T00:00:00Z","main_file_link":[{"url":"http://arxiv.org/abs/1602.06531","open_access":"1"}],"doi":"10.1007/978-3-319-24486-0_13","intvolume":"      9355","language":[{"iso":"eng"}],"quality_controlled":"1","type":"conference","citation":{"apa":"Pentina, A., &#38; Ben David, S. (2015). Multi-task and lifelong learning of kernels (Vol. 9355, pp. 194–208). Presented at the ALT: Algorithmic Learning Theory, Banff, AB, Canada: Springer. <a href=\"https://doi.org/10.1007/978-3-319-24486-0_13\">https://doi.org/10.1007/978-3-319-24486-0_13</a>","ista":"Pentina A, Ben David S. 2015. Multi-task and lifelong learning of kernels. ALT: Algorithmic Learning Theory, LNCS, vol. 9355, 194–208.","ieee":"A. Pentina and S. Ben David, “Multi-task and lifelong learning of kernels,” presented at the ALT: Algorithmic Learning Theory, Banff, AB, Canada, 2015, vol. 9355, pp. 194–208.","mla":"Pentina, Anastasia, and Shai Ben David. <i>Multi-Task and Lifelong Learning of Kernels</i>. Vol. 9355, Springer, 2015, pp. 194–208, doi:<a href=\"https://doi.org/10.1007/978-3-319-24486-0_13\">10.1007/978-3-319-24486-0_13</a>.","chicago":"Pentina, Anastasia, and Shai Ben David. “Multi-Task and Lifelong Learning of Kernels,” 9355:194–208. Springer, 2015. <a href=\"https://doi.org/10.1007/978-3-319-24486-0_13\">https://doi.org/10.1007/978-3-319-24486-0_13</a>.","ama":"Pentina A, Ben David S. Multi-task and lifelong learning of kernels. In: Vol 9355. Springer; 2015:194-208. doi:<a href=\"https://doi.org/10.1007/978-3-319-24486-0_13\">10.1007/978-3-319-24486-0_13</a>","short":"A. Pentina, S. Ben David, in:, Springer, 2015, pp. 194–208."},"volume":9355,"isi":1,"publisher":"Springer","department":[{"_id":"ChLa"}],"alternative_title":["LNCS"],"project":[{"_id":"2532554C-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"308036","name":"Lifelong Learning of Visual Scene Understanding"}],"corr_author":"1","author":[{"id":"42E87FC6-F248-11E8-B48F-1D18A9856A87","first_name":"Anastasia","last_name":"Pentina","full_name":"Pentina, Anastasia"},{"first_name":"Shai","last_name":"Ben David","full_name":"Ben David, Shai"}],"oa":1,"scopus_import":"1","conference":{"end_date":"2015-10-06","name":"ALT: Algorithmic Learning Theory","location":"Banff, AB, Canada","start_date":"2015-10-04"},"status":"public","article_processing_charge":"No","title":"Multi-task and lifelong learning of kernels","arxiv":1,"oa_version":"Preprint","date_created":"2018-12-11T11:53:35Z","publication_status":"published","external_id":{"arxiv":["1602.06531"],"isi":["000367595100013"]},"abstract":[{"lang":"eng","text":"We consider a problem of learning kernels for use in SVM classification in the multi-task and lifelong scenarios and provide generalization bounds on the error of a large margin classifier. Our results show that, under mild conditions on the family of kernels used for learning, solving several related tasks simultaneously is beneficial over single task learning. In particular, as the number of observed tasks grows, assuming that in the considered family of kernels there exists one that yields low approximation error on all tasks, the overhead associated with learning such a kernel vanishes and the complexity converges to that of learning when this good kernel is given to the learner."}],"page":"194 - 208"},{"doi":"10.1137/140993843","day":"14","date_published":"2015-07-14T00:00:00Z","main_file_link":[{"url":"http://arxiv.org/abs/1410.3736","open_access":"1"}],"citation":{"chicago":"Akopyan, Arseniy, and Alexander Plakhov. “Minimal Resistance of Curves under the Single Impact Assumption.” <i>Society for Industrial and Applied Mathematics</i>. SIAM, 2015. <a href=\"https://doi.org/10.1137/140993843\">https://doi.org/10.1137/140993843</a>.","mla":"Akopyan, Arseniy, and Alexander Plakhov. “Minimal Resistance of Curves under the Single Impact Assumption.” <i>Society for Industrial and Applied Mathematics</i>, vol. 47, no. 4, SIAM, 2015, pp. 2754–69, doi:<a href=\"https://doi.org/10.1137/140993843\">10.1137/140993843</a>.","short":"A. Akopyan, A. Plakhov, Society for Industrial and Applied Mathematics 47 (2015) 2754–2769.","ama":"Akopyan A, Plakhov A. Minimal resistance of curves under the single impact assumption. <i>Society for Industrial and Applied Mathematics</i>. 2015;47(4):2754-2769. doi:<a href=\"https://doi.org/10.1137/140993843\">10.1137/140993843</a>","ieee":"A. Akopyan and A. Plakhov, “Minimal resistance of curves under the single impact assumption,” <i>Society for Industrial and Applied Mathematics</i>, vol. 47, no. 4. SIAM, pp. 2754–2769, 2015.","ista":"Akopyan A, Plakhov A. 2015. Minimal resistance of curves under the single impact assumption. Society for Industrial and Applied Mathematics. 47(4), 2754–2769.","apa":"Akopyan, A., &#38; Plakhov, A. (2015). Minimal resistance of curves under the single impact assumption. <i>Society for Industrial and Applied Mathematics</i>. SIAM. <a href=\"https://doi.org/10.1137/140993843\">https://doi.org/10.1137/140993843</a>"},"type":"journal_article","volume":47,"intvolume":"        47","publication":"Society for Industrial and Applied Mathematics","language":[{"iso":"eng"}],"quality_controlled":"1","publist_id":"5423","month":"07","ec_funded":1,"date_updated":"2025-09-23T09:35:36Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1710","year":"2015","issue":"4","article_processing_charge":"No","title":"Minimal resistance of curves under the single impact assumption","arxiv":1,"date_created":"2018-12-11T11:53:36Z","publication_status":"published","oa_version":"Preprint","external_id":{"arxiv":["1410.3736"],"isi":["000360691500009"]},"abstract":[{"text":"We consider the hollow on the half-plane {(x, y) : y ≤ 0} ⊂ ℝ2 defined by a function u : (-1, 1) → ℝ, u(x) &lt; 0, and a vertical flow of point particles incident on the hollow. It is assumed that u satisfies the so-called single impact condition (SIC): each incident particle is elastically reflected by graph(u) and goes away without hitting the graph of u anymore. We solve the problem: find the function u minimizing the force of resistance created by the flow. We show that the graph of the minimizer is formed by two arcs of parabolas symmetric to each other with respect to the y-axis. Assuming that the resistance of u ≡ 0 equals 1, we show that the minimal resistance equals π/2 - 2arctan(1/2) ≈ 0.6435. This result completes the previously obtained result [SIAM J. Math. Anal., 46 (2014), pp. 2730-2742] stating in particular that the minimal resistance of a hollow in higher dimensions equals 0.5. We additionally consider a similar problem of minimal resistance, where the hollow in the half-space {(x1,...,xd,y) : y ≤ 0} ⊂ ℝd+1 is defined by a radial function U satisfying the SIC, U(x) = u(|x|), with x = (x1,...,xd), u(ξ) &lt; 0 for 0 ≤ ξ &lt; 1, and u(ξ) = 0 for ξ ≥ 1, and the flow is parallel to the y-axis. The minimal resistance is greater than 0.5 (and coincides with 0.6435 when d = 1) and converges to 0.5 as d → ∞.","lang":"eng"}],"page":"2754 - 2769","project":[{"call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"author":[{"last_name":"Akopyan","id":"430D2C90-F248-11E8-B48F-1D18A9856A87","first_name":"Arseniy","orcid":"0000-0002-2548-617X","full_name":"Akopyan, Arseniy"},{"last_name":"Plakhov","first_name":"Alexander","full_name":"Plakhov, Alexander"}],"isi":1,"department":[{"_id":"HeEd"}],"publisher":"SIAM","status":"public","oa":1,"scopus_import":"1"},{"abstract":[{"text":"The majority of immune cells in Drosophila melanogaster are plasmatocytes; they carry out similar functions to vertebrate macrophages, influencing development as well as protecting against infection and cancer. Plasmatocytes, sometimes referred to with the broader term of hemocytes, migrate widely during embryonic development and cycle in the larvae between sessile and circulating positions. Here we discuss the similarities of plasmatocyte developmental migration and its functions to that of vertebrate macrophages, considering the recent controversy regarding the functions of Drosophila PDGF/VEGF related ligands. We also examine recent findings on the significance of adhesion for plasmatocyte migration in the embryo, as well as proliferation, trans-differentiation, and tumor responses in the larva. We spotlight parallels throughout to vertebrate immune responses.","lang":"eng"}],"external_id":{"isi":["000364577600011"]},"page":"71 - 79","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","file":[{"creator":"system","relation":"main_file","content_type":"application/pdf","file_name":"IST-2015-346-v1+1_Current_Opinion_Review_Ratheesh_et_al_2015.pdf","checksum":"bbb1ee39ca52929aefe4f48752b166ee","date_created":"2018-12-12T10:14:44Z","access_level":"open_access","date_updated":"2020-07-14T12:45:13Z","file_size":1023680,"file_id":"5098"}],"file_date_updated":"2020-07-14T12:45:13Z","issue":"10","article_processing_charge":"No","title":"Drosophila immune cell migration and adhesion during embryonic development and larval immune responses","pubrep_id":"346","oa_version":"Published Version","date_created":"2018-12-11T11:53:36Z","publication_status":"published","status":"public","has_accepted_license":"1","tmp":{"short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"oa":1,"scopus_import":"1","project":[{"grant_number":"334077","name":"Investigating the role of transporters in invasive migration through junctions","call_identifier":"FP7","_id":"2536F660-B435-11E9-9278-68D0E5697425"}],"corr_author":"1","author":[{"last_name":"Ratheesh","id":"2F064CFE-F248-11E8-B48F-1D18A9856A87","first_name":"Aparna","full_name":"Ratheesh, Aparna","orcid":"0000-0001-7190-0776"},{"full_name":"Belyaeva, Vera","last_name":"Belyaeva","id":"47F080FE-F248-11E8-B48F-1D18A9856A87","first_name":"Vera"},{"first_name":"Daria E","id":"3D224B9E-F248-11E8-B48F-1D18A9856A87","last_name":"Siekhaus","orcid":"0000-0001-8323-8353","full_name":"Siekhaus, Daria E"}],"isi":1,"department":[{"_id":"DaSi"}],"publisher":"Elsevier","type":"journal_article","citation":{"ama":"Ratheesh A, Belyaeva V, Siekhaus DE. Drosophila immune cell migration and adhesion during embryonic development and larval immune responses. <i>Current Opinion in Cell Biology</i>. 2015;36(10):71-79. doi:<a href=\"https://doi.org/10.1016/j.ceb.2015.07.003\">10.1016/j.ceb.2015.07.003</a>","short":"A. Ratheesh, V. Belyaeva, D.E. Siekhaus, Current Opinion in Cell Biology 36 (2015) 71–79.","mla":"Ratheesh, Aparna, et al. “Drosophila Immune Cell Migration and Adhesion during Embryonic Development and Larval Immune Responses.” <i>Current Opinion in Cell Biology</i>, vol. 36, no. 10, Elsevier, 2015, pp. 71–79, doi:<a href=\"https://doi.org/10.1016/j.ceb.2015.07.003\">10.1016/j.ceb.2015.07.003</a>.","chicago":"Ratheesh, Aparna, Vera Belyaeva, and Daria E Siekhaus. “Drosophila Immune Cell Migration and Adhesion during Embryonic Development and Larval Immune Responses.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.ceb.2015.07.003\">https://doi.org/10.1016/j.ceb.2015.07.003</a>.","ieee":"A. Ratheesh, V. Belyaeva, and D. E. Siekhaus, “Drosophila immune cell migration and adhesion during embryonic development and larval immune responses,” <i>Current Opinion in Cell Biology</i>, vol. 36, no. 10. Elsevier, pp. 71–79, 2015.","ista":"Ratheesh A, Belyaeva V, Siekhaus DE. 2015. Drosophila immune cell migration and adhesion during embryonic development and larval immune responses. Current Opinion in Cell Biology. 36(10), 71–79.","apa":"Ratheesh, A., Belyaeva, V., &#38; Siekhaus, D. E. (2015). Drosophila immune cell migration and adhesion during embryonic development and larval immune responses. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2015.07.003\">https://doi.org/10.1016/j.ceb.2015.07.003</a>"},"ddc":["573"],"volume":36,"intvolume":"        36","publication":"Current Opinion in Cell Biology","language":[{"iso":"eng"}],"quality_controlled":"1","doi":"10.1016/j.ceb.2015.07.003","day":"01","date_published":"2015-10-01T00:00:00Z","date_updated":"2025-09-23T08:29:26Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1712","year":"2015","publist_id":"5421","month":"10","ec_funded":1},{"scopus_import":"1","conference":{"start_date":"2014-12-02","location":"Rome, Italy","name":"RTSS: Real-Time Systems Symposium","end_date":"2014-12-05"},"status":"public","isi":1,"publisher":"IEEE","department":[{"_id":"KrCh"}],"author":[{"full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","last_name":"Chatterjee"},{"orcid":"0000-0002-8943-0722","full_name":"Pavlogiannis, Andreas","first_name":"Andreas","id":"49704004-F248-11E8-B48F-1D18A9856A87","last_name":"Pavlogiannis"},{"full_name":"Kößler, Alexander","first_name":"Alexander","last_name":"Kößler"},{"full_name":"Schmid, Ulrich","first_name":"Ulrich","last_name":"Schmid"}],"abstract":[{"lang":"eng","text":"We present a flexible framework for the automated competitive analysis of on-line scheduling algorithms for firm-deadline real-time tasks based on multi-objective graphs: Given a task set and an on-line scheduling algorithm specified as a labeled transition system, along with some optional safety, liveness, and/or limit-average constraints for the adversary, we automatically compute the competitive ratio of the algorithm w.r.t. A clairvoyant scheduler. We demonstrate the flexibility and power of our approach by comparing the competitive ratio of several on-line algorithms, including Dover, that have been proposed in the past, for various task sets. Our experimental results reveal that none of these algorithms is universally optimal, in the sense that there are task sets where other schedulers provide better performance. Our framework is hence a very useful design tool for selecting optimal algorithms for a given application."}],"external_id":{"isi":["000569750000012"]},"page":"118 - 127","article_processing_charge":"No","title":"A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks","related_material":{"record":[{"relation":"earlier_version","status":"public","id":"5423"},{"id":"821","status":"public","relation":"dissertation_contains"}]},"date_created":"2018-12-11T11:53:37Z","publication_status":"published","oa_version":"None","issue":"January","year":"2015","date_updated":"2026-04-08T14:22:16Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1714","publist_id":"5417","month":"01","intvolume":"      2015","publication":"Real-Time Systems Symposium","language":[{"iso":"eng"}],"quality_controlled":"1","type":"conference","citation":{"ista":"Chatterjee K, Pavlogiannis A, Kößler A, Schmid U. 2015. A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks. Real-Time Systems Symposium. RTSS: Real-Time Systems Symposium vol. 2015, 118–127.","apa":"Chatterjee, K., Pavlogiannis, A., Kößler, A., &#38; Schmid, U. (2015). A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks. In <i>Real-Time Systems Symposium</i> (Vol. 2015, pp. 118–127). Rome, Italy: IEEE. <a href=\"https://doi.org/10.1109/RTSS.2014.9\">https://doi.org/10.1109/RTSS.2014.9</a>","mla":"Chatterjee, Krishnendu, et al. “A Framework for Automated Competitive Analysis of On-Line Scheduling of Firm-Deadline Tasks.” <i>Real-Time Systems Symposium</i>, vol. 2015, no. January, IEEE, 2015, pp. 118–27, doi:<a href=\"https://doi.org/10.1109/RTSS.2014.9\">10.1109/RTSS.2014.9</a>.","chicago":"Chatterjee, Krishnendu, Andreas Pavlogiannis, Alexander Kößler, and Ulrich Schmid. “A Framework for Automated Competitive Analysis of On-Line Scheduling of Firm-Deadline Tasks.” In <i>Real-Time Systems Symposium</i>, 2015:118–27. IEEE, 2015. <a href=\"https://doi.org/10.1109/RTSS.2014.9\">https://doi.org/10.1109/RTSS.2014.9</a>.","ama":"Chatterjee K, Pavlogiannis A, Kößler A, Schmid U. A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks. In: <i>Real-Time Systems Symposium</i>. Vol 2015. IEEE; 2015:118-127. doi:<a href=\"https://doi.org/10.1109/RTSS.2014.9\">10.1109/RTSS.2014.9</a>","short":"K. Chatterjee, A. Pavlogiannis, A. Kößler, U. Schmid, in:, Real-Time Systems Symposium, IEEE, 2015, pp. 118–127.","ieee":"K. Chatterjee, A. Pavlogiannis, A. Kößler, and U. Schmid, “A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks,” in <i>Real-Time Systems Symposium</i>, Rome, Italy, 2015, vol. 2015, no. January, pp. 118–127."},"volume":2015,"day":"15","date_published":"2015-01-15T00:00:00Z","doi":"10.1109/RTSS.2014.9"},{"publisher":"Elsevier","department":[{"_id":"PeJo"}],"isi":1,"author":[{"last_name":"Vandael","id":"3AE48E0A-F248-11E8-B48F-1D18A9856A87","first_name":"David H","orcid":"0000-0001-7577-1676","full_name":"Vandael, David H"},{"full_name":"Espinoza Martinez, Claudia ","orcid":"0000-0003-4710-2082","first_name":"Claudia ","id":"31FFEE2E-F248-11E8-B48F-1D18A9856A87","last_name":"Espinoza Martinez"},{"full_name":"Jonas, Peter M","orcid":"0000-0001-5001-4804","last_name":"Jonas","first_name":"Peter M","id":"353C1B58-F248-11E8-B48F-1D18A9856A87"}],"corr_author":"1","scopus_import":"1","oa":1,"tmp":{"short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"status":"public","has_accepted_license":"1","date_created":"2018-12-11T11:54:19Z","publication_status":"published","oa_version":"Published Version","pubrep_id":"822","article_processing_charge":"No","title":"Excitement about inhibitory presynaptic terminals","issue":"6","file_date_updated":"2020-07-14T12:45:19Z","file":[{"date_created":"2018-12-12T10:16:07Z","access_level":"open_access","checksum":"d1808550e376a0eca2a950fda017cfa6","creator":"system","relation":"main_file","file_name":"IST-2017-822-v1+1_Perspective_Fig__Final.pdf","content_type":"application/pdf","file_id":"5192","file_size":411832,"date_updated":"2020-07-14T12:45:19Z"},{"file_id":"5193","file_size":100769,"date_updated":"2020-07-14T12:45:19Z","access_level":"open_access","date_created":"2018-12-12T10:16:07Z","checksum":"a279f4ae61e6c8f33d68f69a0d02097d","relation":"main_file","file_name":"IST-2017-822-v1+2_Perspective_Final2.pdf","content_type":"application/pdf","creator":"system"}],"page":"1149 - 1151","abstract":[{"lang":"eng","text":"Based on extrapolation from excitatory synapses, it is often assumed that depletion of the releasable pool of synaptic vesicles is the main factor underlying depression at inhibitory synapses. In this issue of Neuron, using subcellular patch-clamp recording from inhibitory presynaptic terminals, Kawaguchi and Sakaba (2015) show that at Purkinje cell-deep cerebellar nuclei neuron synapses, changes in presynaptic action potential waveform substantially contribute to synaptic depression. Based on extrapolation from excitatory synapses, it is often assumed that depletion of the releasable pool of synaptic vesicles is the main factor underlying depression at inhibitory synapses. In this issue of Neuron, using subcellular patch-clamp recording from inhibitory presynaptic terminals, Kawaguchi and Sakaba (2015) show that at Purkinje cell-deep cerebellar nuclei neuron synapses, changes in presynaptic action potential waveform substantially contribute to synaptic depression."}],"external_id":{"isi":["000351319000002"]},"publist_id":"5256","month":"03","year":"2015","_id":"1845","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_updated":"2025-09-23T08:44:39Z","date_published":"2015-03-18T00:00:00Z","day":"18","doi":"10.1016/j.neuron.2015.03.006","quality_controlled":"1","language":[{"iso":"eng"}],"publication":"Neuron","intvolume":"        85","volume":85,"ddc":["570"],"citation":{"ama":"Vandael DH, Espinoza Martinez C, Jonas PM. Excitement about inhibitory presynaptic terminals. <i>Neuron</i>. 2015;85(6):1149-1151. doi:<a href=\"https://doi.org/10.1016/j.neuron.2015.03.006\">10.1016/j.neuron.2015.03.006</a>","short":"D.H. Vandael, C. Espinoza Martinez, P.M. Jonas, Neuron 85 (2015) 1149–1151.","chicago":"Vandael, David H, Claudia  Espinoza Martinez, and Peter M Jonas. “Excitement about Inhibitory Presynaptic Terminals.” <i>Neuron</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.neuron.2015.03.006\">https://doi.org/10.1016/j.neuron.2015.03.006</a>.","mla":"Vandael, David H., et al. “Excitement about Inhibitory Presynaptic Terminals.” <i>Neuron</i>, vol. 85, no. 6, Elsevier, 2015, pp. 1149–51, doi:<a href=\"https://doi.org/10.1016/j.neuron.2015.03.006\">10.1016/j.neuron.2015.03.006</a>.","ieee":"D. H. Vandael, C. Espinoza Martinez, and P. M. Jonas, “Excitement about inhibitory presynaptic terminals,” <i>Neuron</i>, vol. 85, no. 6. Elsevier, pp. 1149–1151, 2015.","ista":"Vandael DH, Espinoza Martinez C, Jonas PM. 2015. Excitement about inhibitory presynaptic terminals. Neuron. 85(6), 1149–1151.","apa":"Vandael, D. H., Espinoza Martinez, C., &#38; Jonas, P. M. (2015). Excitement about inhibitory presynaptic terminals. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2015.03.006\">https://doi.org/10.1016/j.neuron.2015.03.006</a>"},"type":"journal_article"},{"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"        52","publication":"Acta Informatica","ddc":["000"],"volume":52,"type":"journal_article","citation":{"ista":"Beneš N, Kretinsky J, Larsen K, Möller M, Sickert S, Srba J. 2015. Refinement checking on parametric modal transition systems. Acta Informatica. 52(2–3), 269–297.","apa":"Beneš, N., Kretinsky, J., Larsen, K., Möller, M., Sickert, S., &#38; Srba, J. (2015). Refinement checking on parametric modal transition systems. <i>Acta Informatica</i>. Springer. <a href=\"https://doi.org/10.1007/s00236-015-0215-4\">https://doi.org/10.1007/s00236-015-0215-4</a>","chicago":"Beneš, Nikola, Jan Kretinsky, Kim Larsen, Mikael Möller, Salomon Sickert, and Jiří Srba. “Refinement Checking on Parametric Modal Transition Systems.” <i>Acta Informatica</i>. Springer, 2015. <a href=\"https://doi.org/10.1007/s00236-015-0215-4\">https://doi.org/10.1007/s00236-015-0215-4</a>.","mla":"Beneš, Nikola, et al. “Refinement Checking on Parametric Modal Transition Systems.” <i>Acta Informatica</i>, vol. 52, no. 2–3, Springer, 2015, pp. 269–97, doi:<a href=\"https://doi.org/10.1007/s00236-015-0215-4\">10.1007/s00236-015-0215-4</a>.","short":"N. Beneš, J. Kretinsky, K. Larsen, M. Möller, S. Sickert, J. Srba, Acta Informatica 52 (2015) 269–297.","ama":"Beneš N, Kretinsky J, Larsen K, Möller M, Sickert S, Srba J. Refinement checking on parametric modal transition systems. <i>Acta Informatica</i>. 2015;52(2-3):269-297. doi:<a href=\"https://doi.org/10.1007/s00236-015-0215-4\">10.1007/s00236-015-0215-4</a>","ieee":"N. Beneš, J. Kretinsky, K. Larsen, M. Möller, S. Sickert, and J. Srba, “Refinement checking on parametric modal transition systems,” <i>Acta Informatica</i>, vol. 52, no. 2–3. Springer, pp. 269–297, 2015."},"date_published":"2015-04-01T00:00:00Z","day":"01","doi":"10.1007/s00236-015-0215-4","year":"2015","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1846","date_updated":"2025-09-23T10:33:12Z","ec_funded":1,"publist_id":"5255","month":"04","article_type":"original","file_date_updated":"2020-07-14T12:45:19Z","file":[{"creator":"dernst","relation":"main_file","file_name":"2015_ActaInfo_Benes.pdf","content_type":"application/pdf","checksum":"fb4037ddc4fc05f33080dd3547ede350","date_created":"2020-05-15T08:57:44Z","access_level":"open_access","date_updated":"2020-07-14T12:45:19Z","file_size":488482,"file_id":"7854"}],"external_id":{"isi":["000351160200008"]},"abstract":[{"lang":"eng","text":"Modal transition systems (MTS) is a well-studied specification formalism of reactive systems supporting a step-wise refinement methodology. Despite its many advantages, the formalism as well as its currently known extensions are incapable of expressing some practically needed aspects in the refinement process like exclusive, conditional and persistent choices. We introduce a new model called parametric modal transition systems (PMTS) together with a general modal refinement notion that overcomes many of the limitations. We investigate the computational complexity of modal and thorough refinement checking on PMTS and its subclasses and provide a direct encoding of the modal refinement problem into quantified Boolean formulae, allowing us to employ state-of-the-art QBF solvers for modal refinement checking. The experiments we report on show that the feasibility of refinement checking is more influenced by the degree of nondeterminism rather than by the syntactic restrictions on the types of formulae allowed in the description of the PMTS."}],"page":"269 - 297","oa_version":"Submitted Version","date_created":"2018-12-11T11:54:20Z","publication_status":"published","title":"Refinement checking on parametric modal transition systems","article_processing_charge":"No","issue":"2-3","oa":1,"scopus_import":"1","status":"public","has_accepted_license":"1","department":[{"_id":"ToHe"},{"_id":"KrCh"}],"publisher":"Springer","isi":1,"project":[{"_id":"25EE3708-B435-11E9-9278-68D0E5697425","name":"Quantitative Reactive Modeling","grant_number":"267989","call_identifier":"FP7"},{"grant_number":"S 11407_N23","name":"Rigorous Systems Engineering","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425"}],"author":[{"first_name":"Nikola","last_name":"Beneš","full_name":"Beneš, Nikola"},{"first_name":"Jan","id":"44CEF464-F248-11E8-B48F-1D18A9856A87","last_name":"Kretinsky","full_name":"Kretinsky, Jan","orcid":"0000-0002-8122-2881"},{"first_name":"Kim","last_name":"Larsen","full_name":"Larsen, Kim"},{"full_name":"Möller, Mikael","first_name":"Mikael","last_name":"Möller"},{"full_name":"Sickert, Salomon","first_name":"Salomon","last_name":"Sickert"},{"full_name":"Srba, Jiří","last_name":"Srba","first_name":"Jiří"}],"corr_author":"1"},{"day":"02","date_published":"2015-03-02T00:00:00Z","doi":"10.1016/j.molp.2014.12.013","intvolume":"         8","acknowledgement":"This work was supported by the European Research Council (project ERC-2011-StG-20101109-PSDP), European Social Fund (CZ.1.07/2.3.00/20.0043), and the Czech Science Foundation GAČR (GA13-40637S).","publication":"Molecular Plant","language":[{"iso":"eng"}],"quality_controlled":"1","type":"journal_article","citation":{"apa":"Grones, P., &#38; Friml, J. (2015). ABP1: Finally docking. <i>Molecular Plant</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.molp.2014.12.013\">https://doi.org/10.1016/j.molp.2014.12.013</a>","ista":"Grones P, Friml J. 2015. ABP1: Finally docking. Molecular Plant. 8(3), 356–358.","ieee":"P. Grones and J. Friml, “ABP1: Finally docking,” <i>Molecular Plant</i>, vol. 8, no. 3. Elsevier, pp. 356–358, 2015.","short":"P. Grones, J. Friml, Molecular Plant 8 (2015) 356–358.","ama":"Grones P, Friml J. ABP1: Finally docking. <i>Molecular Plant</i>. 2015;8(3):356-358. doi:<a href=\"https://doi.org/10.1016/j.molp.2014.12.013\">10.1016/j.molp.2014.12.013</a>","chicago":"Grones, Peter, and Jiří Friml. “ABP1: Finally Docking.” <i>Molecular Plant</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.molp.2014.12.013\">https://doi.org/10.1016/j.molp.2014.12.013</a>.","mla":"Grones, Peter, and Jiří Friml. “ABP1: Finally Docking.” <i>Molecular Plant</i>, vol. 8, no. 3, Elsevier, 2015, pp. 356–58, doi:<a href=\"https://doi.org/10.1016/j.molp.2014.12.013\">10.1016/j.molp.2014.12.013</a>."},"volume":8,"publist_id":"5254","month":"03","year":"2015","date_updated":"2025-09-23T07:30:08Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1847","article_processing_charge":"No","title":"ABP1: Finally docking","date_created":"2018-12-11T11:54:20Z","oa_version":"None","publication_status":"published","issue":"3","external_id":{"isi":["000350813400003"]},"page":"356 - 358","isi":1,"department":[{"_id":"JiFr"}],"publisher":"Elsevier","corr_author":"1","author":[{"full_name":"Grones, Peter","id":"399876EC-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","last_name":"Grones"},{"first_name":"Jiřĺ","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","full_name":"Friml, Jiřĺ","orcid":"0000-0002-8302-7596"}],"scopus_import":"1","status":"public"},{"_id":"1848","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_updated":"2025-09-23T08:46:31Z","year":"2015","month":"09","publist_id":"5253","volume":137,"citation":{"ista":"Schwamb B, Pick R, Fernández S, Völp K, Heering J, Dötsch V, Bösser S, Jung J, Beinoravičiute Kellner R, Wesely J, Zörnig I, Hammerschmidt M, Nowak M, Penzel R, Zatloukal K, Joos S, Rieker R, Agaimy A, Söder S, Reid Lombardo K, Kendrick M, Bardsley M, Hayashi Y, Asuzu D, Syed S, Ördög T, Zörnig M. 2015. FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors. International Journal of Cancer. 137(6), 1318–1329.","apa":"Schwamb, B., Pick, R., Fernández, S., Völp, K., Heering, J., Dötsch, V., … Zörnig, M. (2015). FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors. <i>International Journal of Cancer</i>. Wiley. <a href=\"https://doi.org/10.1002/ijc.29498\">https://doi.org/10.1002/ijc.29498</a>","ama":"Schwamb B, Pick R, Fernández S, et al. FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors. <i>International Journal of Cancer</i>. 2015;137(6):1318-1329. doi:<a href=\"https://doi.org/10.1002/ijc.29498\">10.1002/ijc.29498</a>","short":"B. Schwamb, R. Pick, S. Fernández, K. Völp, J. Heering, V. Dötsch, S. Bösser, J. Jung, R. Beinoravičiute Kellner, J. Wesely, I. Zörnig, M. Hammerschmidt, M. Nowak, R. Penzel, K. Zatloukal, S. Joos, R. Rieker, A. Agaimy, S. Söder, K. Reid Lombardo, M. Kendrick, M. Bardsley, Y. Hayashi, D. Asuzu, S. Syed, T. Ördög, M. Zörnig, International Journal of Cancer 137 (2015) 1318–1329.","chicago":"Schwamb, Bettina, Robert Pick, Sara Fernández, Kirsten Völp, Jan Heering, Volker Dötsch, Susanne Bösser, et al. “FAM96A Is a Novel Pro-Apoptotic Tumor Suppressor in Gastrointestinal Stromal Tumors.” <i>International Journal of Cancer</i>. Wiley, 2015. <a href=\"https://doi.org/10.1002/ijc.29498\">https://doi.org/10.1002/ijc.29498</a>.","mla":"Schwamb, Bettina, et al. “FAM96A Is a Novel Pro-Apoptotic Tumor Suppressor in Gastrointestinal Stromal Tumors.” <i>International Journal of Cancer</i>, vol. 137, no. 6, Wiley, 2015, pp. 1318–29, doi:<a href=\"https://doi.org/10.1002/ijc.29498\">10.1002/ijc.29498</a>.","ieee":"B. Schwamb <i>et al.</i>, “FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors,” <i>International Journal of Cancer</i>, vol. 137, no. 6. Wiley, pp. 1318–1329, 2015."},"type":"journal_article","quality_controlled":"1","language":[{"iso":"eng"}],"publication":"International Journal of Cancer","intvolume":"       137","doi":"10.1002/ijc.29498","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4497860/","open_access":"1"}],"date_published":"2015-09-01T00:00:00Z","day":"01","status":"public","scopus_import":"1","oa":1,"author":[{"first_name":"Bettina","last_name":"Schwamb","full_name":"Schwamb, Bettina"},{"full_name":"Pick, Robert","first_name":"Robert","last_name":"Pick"},{"first_name":"Sara","last_name":"Fernández","full_name":"Fernández, Sara"},{"full_name":"Völp, Kirsten","last_name":"Völp","first_name":"Kirsten"},{"last_name":"Heering","first_name":"Jan","full_name":"Heering, Jan"},{"full_name":"Dötsch, Volker","last_name":"Dötsch","first_name":"Volker"},{"full_name":"Bösser, Susanne","first_name":"Susanne","last_name":"Bösser"},{"last_name":"Jung","first_name":"Jennifer","full_name":"Jung, Jennifer"},{"first_name":"Rasa","last_name":"Beinoravičiute Kellner","full_name":"Beinoravičiute Kellner, Rasa"},{"first_name":"Josephine","last_name":"Wesely","full_name":"Wesely, Josephine"},{"full_name":"Zörnig, Inka","last_name":"Zörnig","first_name":"Inka"},{"last_name":"Hammerschmidt","first_name":"Matthias","full_name":"Hammerschmidt, Matthias"},{"last_name":"Nowak","first_name":"Matthias","id":"30845DAA-F248-11E8-B48F-1D18A9856A87","full_name":"Nowak, Matthias"},{"first_name":"Roland","last_name":"Penzel","full_name":"Penzel, Roland"},{"first_name":"Kurt","last_name":"Zatloukal","full_name":"Zatloukal, Kurt"},{"full_name":"Joos, Stefan","first_name":"Stefan","last_name":"Joos"},{"last_name":"Rieker","first_name":"Ralf","full_name":"Rieker, Ralf"},{"last_name":"Agaimy","first_name":"Abbas","full_name":"Agaimy, Abbas"},{"first_name":"Stephan","last_name":"Söder","full_name":"Söder, Stephan"},{"last_name":"Reid Lombardo","first_name":"Kmarie","full_name":"Reid Lombardo, Kmarie"},{"last_name":"Kendrick","first_name":"Michael","full_name":"Kendrick, Michael"},{"full_name":"Bardsley, Michael","first_name":"Michael","last_name":"Bardsley"},{"first_name":"Yujiro","last_name":"Hayashi","full_name":"Hayashi, Yujiro"},{"last_name":"Asuzu","first_name":"David","full_name":"Asuzu, David"},{"last_name":"Syed","first_name":"Sabriya","full_name":"Syed, Sabriya"},{"last_name":"Ördög","first_name":"Tamás","full_name":"Ördög, Tamás"},{"first_name":"Martin","last_name":"Zörnig","full_name":"Zörnig, Martin"}],"department":[{"_id":"LifeSc"}],"publisher":"Wiley","isi":1,"pmid":1,"page":"1318 - 1329","external_id":{"pmid":["25716227"],"isi":["000357808900012"]},"abstract":[{"lang":"eng","text":"The ability to escape apoptosis is a hallmark of cancer-initiating cells and a key factor of resistance to oncolytic therapy. Here, we identify FAM96A as a ubiquitous, evolutionarily conserved apoptosome-activating protein and investigate its potential pro-apoptotic tumor suppressor function in gastrointestinal stromal tumors (GISTs). Interaction between FAM96A and apoptotic peptidase activating factor 1 (APAF1) was identified in yeast two-hybrid screen and further studied by deletion mutants, glutathione-S-transferase pull-down, co-immunoprecipitation and immunofluorescence. Effects of FAM96A overexpression and knock-down on apoptosis sensitivity were examined in cancer cells and zebrafish embryos. Expression of FAM96A in GISTs and histogenetically related cells including interstitial cells of Cajal (ICCs), “fibroblast-like cells” (FLCs) and ICC stem cells (ICC-SCs) was investigated by Northern blotting, reverse transcription—polymerase chain reaction, immunohistochemistry and Western immunoblotting. Tumorigenicity of GIST cells and transformed murine ICC-SCs stably transduced to re-express FAM96A was studied by xeno- and allografting into immunocompromised mice. FAM96A was found to bind APAF1 and to enhance the induction of mitochondrial apoptosis. FAM96A protein or mRNA was dramatically reduced or lost in 106 of 108 GIST samples representing three independent patient cohorts. Whereas ICCs, ICC-SCs and FLCs, the presumed normal counterparts of GIST, were found to robustly express FAM96A protein and mRNA, FAM96A expression was much reduced in tumorigenic ICC-SCs. Re-expression of FAM96A in GIST cells and transformed ICC-SCs increased apoptosis sensitivity and diminished tumorigenicity. Our data suggest FAM96A is a novel pro-apoptotic tumor suppressor that is lost during GIST tumorigenesis."}],"article_type":"original","issue":"6","oa_version":"Submitted Version","date_created":"2018-12-11T11:54:20Z","publication_status":"published","title":"FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors","article_processing_charge":"No"},{"doi":"10.1016/j.bbamcr.2015.02.017","date_published":"2015-09-01T00:00:00Z","day":"01","volume":1853,"citation":{"ista":"Himschoot E, Beeckman T, Friml J, Vanneste S. 2015. Calcium is an organizer of cell polarity in plants. Biochimica et Biophysica Acta - Molecular Cell Research. 1853(9), 2168–2172.","apa":"Himschoot, E., Beeckman, T., Friml, J., &#38; Vanneste, S. (2015). Calcium is an organizer of cell polarity in plants. <i>Biochimica et Biophysica Acta - Molecular Cell Research</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.bbamcr.2015.02.017\">https://doi.org/10.1016/j.bbamcr.2015.02.017</a>","short":"E. Himschoot, T. Beeckman, J. Friml, S. Vanneste, Biochimica et Biophysica Acta - Molecular Cell Research 1853 (2015) 2168–2172.","ama":"Himschoot E, Beeckman T, Friml J, Vanneste S. Calcium is an organizer of cell polarity in plants. <i>Biochimica et Biophysica Acta - Molecular Cell Research</i>. 2015;1853(9):2168-2172. doi:<a href=\"https://doi.org/10.1016/j.bbamcr.2015.02.017\">10.1016/j.bbamcr.2015.02.017</a>","chicago":"Himschoot, Ellie, Tom Beeckman, Jiří Friml, and Steffen Vanneste. “Calcium Is an Organizer of Cell Polarity in Plants.” <i>Biochimica et Biophysica Acta - Molecular Cell Research</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.bbamcr.2015.02.017\">https://doi.org/10.1016/j.bbamcr.2015.02.017</a>.","mla":"Himschoot, Ellie, et al. “Calcium Is an Organizer of Cell Polarity in Plants.” <i>Biochimica et Biophysica Acta - Molecular Cell Research</i>, vol. 1853, no. 9, Elsevier, 2015, pp. 2168–72, doi:<a href=\"https://doi.org/10.1016/j.bbamcr.2015.02.017\">10.1016/j.bbamcr.2015.02.017</a>.","ieee":"E. Himschoot, T. Beeckman, J. Friml, and S. Vanneste, “Calcium is an organizer of cell polarity in plants,” <i>Biochimica et Biophysica Acta - Molecular Cell Research</i>, vol. 1853, no. 9. Elsevier, pp. 2168–2172, 2015."},"type":"journal_article","language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"      1853","acknowledgement":"The contributing authors were supported by the Ghent University Special Research Fund (to E.H.), the Interuniversity Attraction Poles Programme (IAP VI/33 and IUAP P7/29 ‘MARS’), the European Research Council (project ERC-2011-StG-20101109-PSDP, to J.F.), and the Research Foundation Flanders (to S.V.).","publication":"Biochimica et Biophysica Acta - Molecular Cell Research","month":"09","publist_id":"5252","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1849","date_updated":"2025-09-23T08:04:01Z","year":"2015","issue":"9","oa_version":"None","publication_status":"published","date_created":"2018-12-11T11:54:21Z","article_processing_charge":"No","title":"Calcium is an organizer of cell polarity in plants","abstract":[{"text":"Cell polarity is a fundamental property of pro- and eukaryotic cells. It is necessary for coordination of cell division, cell morphogenesis and signaling processes. How polarity is generated and maintained is a complex issue governed by interconnected feed-back regulations between small GTPase signaling and membrane tension-based signaling that controls membrane trafficking, and cytoskeleton organization and dynamics. Here, we will review the potential role for calcium as a crucial signal that connects and coordinates the respective processes during polarization processes in plants. This article is part of a Special Issue entitled: 13th European Symposium on Calcium.","lang":"eng"}],"external_id":{"isi":["000359960400028"]},"page":"2168 - 2172","author":[{"last_name":"Himschoot","first_name":"Ellie","full_name":"Himschoot, Ellie"},{"full_name":"Beeckman, Tom","last_name":"Beeckman","first_name":"Tom"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiřĺ","last_name":"Friml","orcid":"0000-0002-8302-7596","full_name":"Friml, Jiřĺ"},{"full_name":"Vanneste, Steffen","last_name":"Vanneste","first_name":"Steffen"}],"department":[{"_id":"JiFr"}],"publisher":"Elsevier","isi":1,"status":"public","scopus_import":"1"},{"file":[{"relation":"main_file","content_type":"application/pdf","file_name":"IST-2015-329-v1+1_manuscript.pdf","creator":"system","checksum":"3c0dcacc900bc45cc65a453dfda4ca43","access_level":"open_access","date_created":"2018-12-12T10:18:07Z","date_updated":"2020-07-14T12:45:19Z","file_size":1546914,"file_id":"5326"}],"external_id":{"isi":["000353311700006"]},"abstract":[{"lang":"eng","text":"Entomopathogenic fungi are potent biocontrol agents that are widely used against insect pests, many of which are social insects. Nevertheless, theoretical investigations of their particular life history are scarce. We develop a model that takes into account the main distinguishing features between traditionally studied diseases and obligate killing pathogens, like the (biocontrol-relevant) insect-pathogenic fungi Metarhizium and Beauveria. First, obligate killing entomopathogenic fungi produce new infectious particles (conidiospores) only after host death and not yet on the living host. Second, the killing rates of entomopathogenic fungi depend strongly on the initial exposure dosage, thus we explicitly consider the pathogen load of individual hosts. Further, we make the model applicable not only to solitary host species, but also to group living species by incorporating social interactions between hosts, like the collective disease defences of insect societies. Our results identify the optimal killing rate for the pathogen that minimises its invasion threshold. Furthermore, we find that the rate of contact between hosts has an ambivalent effect: dense interaction networks between individuals are considered to facilitate disease outbreaks because of increased pathogen transmission. In social insects, this is compensated by their collective disease defences, i.e., social immunity. For the type of pathogens considered here, we show that even without social immunity, high contact rates between live individuals dilute the pathogen in the host colony and hence can reduce individual pathogen loads below disease-causing levels."}],"page":"54 - 64","file_date_updated":"2020-07-14T12:45:19Z","issue":"5","oa_version":"Submitted Version","date_created":"2018-12-11T11:54:21Z","publication_status":"published","title":"Fungal disease dynamics in insect societies: Optimal killing rates and the ambivalent effect of high social interaction rates","article_processing_charge":"No","pubrep_id":"329","status":"public","has_accepted_license":"1","oa":1,"scopus_import":"1","project":[{"_id":"25B07788-B435-11E9-9278-68D0E5697425","name":"Limits to selection in biology and in evolutionary computation","grant_number":"250152","call_identifier":"FP7"},{"grant_number":"243071","name":"Social Vaccination in Ant Colonies: from Individual Mechanisms to Society Effects","call_identifier":"FP7","_id":"25DC711C-B435-11E9-9278-68D0E5697425"}],"author":[{"orcid":"0000-0002-2519-824X","full_name":"Novak, Sebastian","id":"461468AE-F248-11E8-B48F-1D18A9856A87","first_name":"Sebastian","last_name":"Novak"},{"last_name":"Cremer","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","first_name":"Sylvia","orcid":"0000-0002-2193-3868","full_name":"Cremer, Sylvia"}],"corr_author":"1","department":[{"_id":"NiBa"},{"_id":"SyCr"}],"publisher":"Elsevier","isi":1,"ddc":["576"],"volume":372,"type":"journal_article","citation":{"mla":"Novak, Sebastian, and Sylvia Cremer. “Fungal Disease Dynamics in Insect Societies: Optimal Killing Rates and the Ambivalent Effect of High Social Interaction Rates.” <i>Journal of Theoretical Biology</i>, vol. 372, no. 5, Elsevier, 2015, pp. 54–64, doi:<a href=\"https://doi.org/10.1016/j.jtbi.2015.02.018\">10.1016/j.jtbi.2015.02.018</a>.","chicago":"Novak, Sebastian, and Sylvia Cremer. “Fungal Disease Dynamics in Insect Societies: Optimal Killing Rates and the Ambivalent Effect of High Social Interaction Rates.” <i>Journal of Theoretical Biology</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.jtbi.2015.02.018\">https://doi.org/10.1016/j.jtbi.2015.02.018</a>.","ama":"Novak S, Cremer S. Fungal disease dynamics in insect societies: Optimal killing rates and the ambivalent effect of high social interaction rates. <i>Journal of Theoretical Biology</i>. 2015;372(5):54-64. doi:<a href=\"https://doi.org/10.1016/j.jtbi.2015.02.018\">10.1016/j.jtbi.2015.02.018</a>","short":"S. Novak, S. Cremer, Journal of Theoretical Biology 372 (2015) 54–64.","ieee":"S. Novak and S. Cremer, “Fungal disease dynamics in insect societies: Optimal killing rates and the ambivalent effect of high social interaction rates,” <i>Journal of Theoretical Biology</i>, vol. 372, no. 5. Elsevier, pp. 54–64, 2015.","ista":"Novak S, Cremer S. 2015. Fungal disease dynamics in insect societies: Optimal killing rates and the ambivalent effect of high social interaction rates. Journal of Theoretical Biology. 372(5), 54–64.","apa":"Novak, S., &#38; Cremer, S. (2015). Fungal disease dynamics in insect societies: Optimal killing rates and the ambivalent effect of high social interaction rates. <i>Journal of Theoretical Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jtbi.2015.02.018\">https://doi.org/10.1016/j.jtbi.2015.02.018</a>"},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"       372","publication":"Journal of Theoretical Biology","doi":"10.1016/j.jtbi.2015.02.018","date_published":"2015-05-07T00:00:00Z","day":"07","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1850","date_updated":"2025-09-23T08:54:35Z","year":"2015","publist_id":"5251","month":"05","ec_funded":1},{"has_accepted_license":"1","status":"public","scopus_import":"1","oa":1,"author":[{"last_name":"Priklopil","id":"3C869AA0-F248-11E8-B48F-1D18A9856A87","first_name":"Tadeas","full_name":"Priklopil, Tadeas"},{"full_name":"Kisdi, Eva","first_name":"Eva","last_name":"Kisdi"},{"full_name":"Gyllenberg, Mats","last_name":"Gyllenberg","first_name":"Mats"}],"corr_author":"1","project":[{"call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"isi":1,"department":[{"_id":"NiBa"},{"_id":"KrCh"}],"publisher":"Wiley","page":"1015 - 1026","abstract":[{"text":"We consider mating strategies for females who search for males sequentially during a season of limited length. We show that the best strategy rejects a given male type if encountered before a time-threshold but accepts him after. For frequency-independent benefits, we obtain the optimal time-thresholds explicitly for both discrete and continuous distributions of males, and allow for mistakes being made in assessing the correct male type. When the benefits are indirect (genes for the offspring) and the population is under frequency-dependent ecological selection, the benefits depend on the mating strategy of other females as well. This case is particularly relevant to speciation models that seek to explore the stability of reproductive isolation by assortative mating under frequency-dependent ecological selection. We show that the indirect benefits are to be quantified by the reproductive values of couples, and describe how the evolutionarily stable time-thresholds can be found. We conclude with an example based on the Levene model, in which we analyze the evolutionarily stable assortative mating strategies and the strength of reproductive isolation provided by them.","lang":"eng"}],"external_id":{"pmid":["25662095"],"isi":["000353236000014"]},"file":[{"file_id":"7855","file_size":967214,"date_updated":"2020-07-14T12:45:19Z","access_level":"open_access","date_created":"2020-05-15T09:05:34Z","checksum":"1e8be0b1d7598a78cd2623d8ee8e7798","file_name":"2015_Evolution_Priklopil.pdf","content_type":"application/pdf","relation":"main_file","creator":"dernst"}],"pmid":1,"file_date_updated":"2020-07-14T12:45:19Z","article_type":"original","issue":"4","article_processing_charge":"No","title":"Evolutionarily stable mating decisions for sequentially searching females and the stability of reproductive isolation by assortative mating","oa_version":"Submitted Version","publication_status":"published","date_created":"2018-12-11T11:54:21Z","date_updated":"2025-09-22T14:27:30Z","_id":"1851","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2015","publist_id":"5249","month":"02","publication_identifier":{"eissn":["1558-5646"],"issn":["0014-3820"]},"ec_funded":1,"type":"journal_article","citation":{"ieee":"T. Priklopil, E. Kisdi, and M. Gyllenberg, “Evolutionarily stable mating decisions for sequentially searching females and the stability of reproductive isolation by assortative mating,” <i>Evolution</i>, vol. 69, no. 4. Wiley, pp. 1015–1026, 2015.","chicago":"Priklopil, Tadeas, Eva Kisdi, and Mats Gyllenberg. “Evolutionarily Stable Mating Decisions for Sequentially Searching Females and the Stability of Reproductive Isolation by Assortative Mating.” <i>Evolution</i>. Wiley, 2015. <a href=\"https://doi.org/10.1111/evo.12618\">https://doi.org/10.1111/evo.12618</a>.","mla":"Priklopil, Tadeas, et al. “Evolutionarily Stable Mating Decisions for Sequentially Searching Females and the Stability of Reproductive Isolation by Assortative Mating.” <i>Evolution</i>, vol. 69, no. 4, Wiley, 2015, pp. 1015–26, doi:<a href=\"https://doi.org/10.1111/evo.12618\">10.1111/evo.12618</a>.","short":"T. Priklopil, E. Kisdi, M. Gyllenberg, Evolution 69 (2015) 1015–1026.","ama":"Priklopil T, Kisdi E, Gyllenberg M. Evolutionarily stable mating decisions for sequentially searching females and the stability of reproductive isolation by assortative mating. <i>Evolution</i>. 2015;69(4):1015-1026. doi:<a href=\"https://doi.org/10.1111/evo.12618\">10.1111/evo.12618</a>","apa":"Priklopil, T., Kisdi, E., &#38; Gyllenberg, M. (2015). Evolutionarily stable mating decisions for sequentially searching females and the stability of reproductive isolation by assortative mating. <i>Evolution</i>. Wiley. <a href=\"https://doi.org/10.1111/evo.12618\">https://doi.org/10.1111/evo.12618</a>","ista":"Priklopil T, Kisdi E, Gyllenberg M. 2015. Evolutionarily stable mating decisions for sequentially searching females and the stability of reproductive isolation by assortative mating. Evolution. 69(4), 1015–1026."},"volume":69,"ddc":["570"],"publication":"Evolution","intvolume":"        69","quality_controlled":"1","language":[{"iso":"eng"}],"doi":"10.1111/evo.12618","day":"09","date_published":"2015-02-09T00:00:00Z"},{"year":"2015","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"1855","date_updated":"2025-09-23T07:26:24Z","month":"03","publist_id":"5245","language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"        84","acknowledgement":"We thank J.R. de Miranda, L. De Smet and D. de Graaf for supplying qRT-PCR and MLPA positive controls, respectively, in the form of plasmids. This work was supported by the Insect Pollinators Initiative (IPI grants BB/1000100/1 and BB/I000151/1). The IPI is funded jointly by the Biotechnology and Biological Sciences Research Council, the Department for Environment, Food and Rural Affairs, the Natural Environment Research Council, The Scottish Government and The Wellcome Trust, under the Living with Environmental Change Partnership.","publication":"Journal of Animal Ecology","ddc":["570"],"volume":84,"type":"journal_article","citation":{"ieee":"D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, and R. Paxton, “A sting in the spit: Widespread cross-infection of multiple RNA viruses across wild and managed bees,” <i>Journal of Animal Ecology</i>, vol. 84, no. 3. Wiley, pp. 615–624, 2015.","ama":"Mcmahon D, Fürst M, Caspar J, Theodorou P, Brown M, Paxton R. A sting in the spit: Widespread cross-infection of multiple RNA viruses across wild and managed bees. <i>Journal of Animal Ecology</i>. 2015;84(3):615-624. doi:<a href=\"https://doi.org/10.1111/1365-2656.12345\">10.1111/1365-2656.12345</a>","short":"D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, R. Paxton, Journal of Animal Ecology 84 (2015) 615–624.","mla":"Mcmahon, Dino, et al. “A Sting in the Spit: Widespread Cross-Infection of Multiple RNA Viruses across Wild and Managed Bees.” <i>Journal of Animal Ecology</i>, vol. 84, no. 3, Wiley, 2015, pp. 615–24, doi:<a href=\"https://doi.org/10.1111/1365-2656.12345\">10.1111/1365-2656.12345</a>.","chicago":"Mcmahon, Dino, Matthias Fürst, Jesicca Caspar, Panagiotis Theodorou, Mark Brown, and Robert Paxton. “A Sting in the Spit: Widespread Cross-Infection of Multiple RNA Viruses across Wild and Managed Bees.” <i>Journal of Animal Ecology</i>. Wiley, 2015. <a href=\"https://doi.org/10.1111/1365-2656.12345\">https://doi.org/10.1111/1365-2656.12345</a>.","apa":"Mcmahon, D., Fürst, M., Caspar, J., Theodorou, P., Brown, M., &#38; Paxton, R. (2015). A sting in the spit: Widespread cross-infection of multiple RNA viruses across wild and managed bees. <i>Journal of Animal Ecology</i>. Wiley. <a href=\"https://doi.org/10.1111/1365-2656.12345\">https://doi.org/10.1111/1365-2656.12345</a>","ista":"Mcmahon D, Fürst M, Caspar J, Theodorou P, Brown M, Paxton R. 2015. A sting in the spit: Widespread cross-infection of multiple RNA viruses across wild and managed bees. Journal of Animal Ecology. 84(3), 615–624."},"date_published":"2015-03-03T00:00:00Z","day":"03","doi":"10.1111/1365-2656.12345","oa":1,"scopus_import":"1","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"status":"public","has_accepted_license":"1","publisher":"Wiley","department":[{"_id":"SyCr"}],"isi":1,"author":[{"first_name":"Dino","last_name":"Mcmahon","full_name":"Mcmahon, Dino"},{"full_name":"Fürst, Matthias","orcid":"0000-0002-3712-925X","last_name":"Fürst","id":"393B1196-F248-11E8-B48F-1D18A9856A87","first_name":"Matthias"},{"full_name":"Caspar, Jesicca","first_name":"Jesicca","last_name":"Caspar"},{"last_name":"Theodorou","first_name":"Panagiotis","full_name":"Theodorou, Panagiotis"},{"full_name":"Brown, Mark","last_name":"Brown","first_name":"Mark"},{"full_name":"Paxton, Robert","last_name":"Paxton","first_name":"Robert"}],"article_type":"original","file_date_updated":"2020-07-14T12:45:19Z","pmid":1,"file":[{"access_level":"open_access","date_created":"2018-12-12T10:18:29Z","checksum":"542a0b9b07e78050a81b35f26f0b82da","relation":"main_file","file_name":"IST-2016-460-v1+1_McMahon_et_al-2015-Journal_of_Animal_Ecology.pdf","content_type":"application/pdf","creator":"system","file_id":"5350","file_size":1823045,"date_updated":"2020-07-14T12:45:19Z"}],"external_id":{"isi":["000353405300004"],"pmid":["25646973"]},"abstract":[{"lang":"eng","text":"Summary: Declining populations of bee pollinators are a cause of concern, with major repercussions for biodiversity loss and food security. RNA viruses associated with honeybees represent a potential threat to other insect pollinators, but the extent of this threat is poorly understood. This study aims to attain a detailed understanding of the current and ongoing risk of emerging infectious disease (EID) transmission between managed and wild pollinator species across a wide range of RNA viruses. Within a structured large-scale national survey across 26 independent sites, we quantify the prevalence and pathogen loads of multiple RNA viruses in co-occurring managed honeybee (Apis mellifera) and wild bumblebee (Bombus spp.) populations. We then construct models that compare virus prevalence between wild and managed pollinators. Multiple RNA viruses associated with honeybees are widespread in sympatric wild bumblebee populations. Virus prevalence in honeybees is a significant predictor of virus prevalence in bumblebees, but we remain cautious in speculating over the principle direction of pathogen transmission. We demonstrate species-specific differences in prevalence, indicating significant variation in disease susceptibility or tolerance. Pathogen loads within individual bumblebees may be high and in the case of at least one RNA virus, prevalence is higher in wild bumblebees than in managed honeybee populations. Our findings indicate widespread transmission of RNA viruses between managed and wild bee pollinators, pointing to an interconnected network of potential disease pressures within and among pollinator species. In the context of the biodiversity crisis, our study emphasizes the importance of targeting a wide range of pathogens and defining host associations when considering potential drivers of population decline."}],"page":"615 - 624","oa_version":"Published Version","publication_status":"published","related_material":{"record":[{"id":"9720","relation":"research_data","status":"public"}]},"date_created":"2018-12-11T11:54:23Z","article_processing_charge":"No","title":"A sting in the spit: Widespread cross-infection of multiple RNA viruses across wild and managed bees","pubrep_id":"460","issue":"3"},{"abstract":[{"text":"The traditional synthesis question given a specification asks for the automatic construction of a system that satisfies the specification, whereas often there exists a preference order among the different systems that satisfy the given specification. Under a probabilistic assumption about the possible inputs, such a preference order is naturally expressed by a weighted automaton, which assigns to each word a value, such that a system is preferred if it generates a higher expected value. We solve the following optimal synthesis problem: given an omega-regular specification, a Markov chain that describes the distribution of inputs, and a weighted automaton that measures how well a system satisfies the given specification under the input assumption, synthesize a system that optimizes the measured value. For safety specifications and quantitative measures that are defined by mean-payoff automata, the optimal synthesis problem reduces to finding a strategy in a Markov decision process (MDP) that is optimal for a long-run average reward objective, which can be achieved in polynomial time. For general omega-regular specifications along with mean-payoff automata, the solution rests on a new, polynomial-time algorithm for computing optimal strategies in MDPs with mean-payoff parity objectives. Our algorithm constructs optimal strategies that consist of two memoryless strategies and a counter. The counter is in general not bounded. To obtain a finite-state system, we show how to construct an ε-optimal strategy with a bounded counter, for all ε &gt; 0. Furthermore, we show how to decide in polynomial time if it is possible to construct an optimal finite-state system (i.e., a system without a counter) for a given specification. We have implemented our approach and the underlying algorithms in a tool that takes qualitative and quantitative specifications and automatically constructs a system that satisfies the qualitative specification and optimizes the quantitative specification, if such a system exists. We present some experimental results showing optimal systems that were automatically generated in this way.","lang":"eng"}],"external_id":{"isi":["000350563000009"],"arxiv":["1004.0739"]},"issue":"1","arxiv":1,"title":"Measuring and synthesizing systems in probabilistic environments","article_processing_charge":"No","oa_version":"Preprint","publication_status":"published","related_material":{"record":[{"id":"3864","relation":"earlier_version","status":"public"}]},"date_created":"2018-12-11T11:54:23Z","status":"public","scopus_import":"1","oa":1,"author":[{"last_name":"Chatterjee","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X"},{"last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A","orcid":"0000−0002−2985−7724","full_name":"Henzinger, Thomas A"},{"full_name":"Jobstmann, Barbara","last_name":"Jobstmann","first_name":"Barbara"},{"full_name":"Singh, Rohit","first_name":"Rohit","last_name":"Singh"}],"project":[{"_id":"25EE3708-B435-11E9-9278-68D0E5697425","grant_number":"267989","name":"Quantitative Reactive Modeling","call_identifier":"FP7"},{"call_identifier":"FWF","name":"Rigorous Systems Engineering","grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425"},{"_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23","call_identifier":"FWF"},{"call_identifier":"FWF","grant_number":"S11407","name":"Game Theory","_id":"25863FF4-B435-11E9-9278-68D0E5697425"},{"_id":"2581B60A-B435-11E9-9278-68D0E5697425","grant_number":"279307","name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7"},{"_id":"2587B514-B435-11E9-9278-68D0E5697425","name":"Microsoft Research Faculty Fellowship"}],"isi":1,"publisher":"ACM","department":[{"_id":"KrCh"},{"_id":"ToHe"}],"citation":{"ieee":"K. Chatterjee, T. A. Henzinger, B. Jobstmann, and R. Singh, “Measuring and synthesizing systems in probabilistic environments,” <i>Journal of the ACM</i>, vol. 62, no. 1. ACM, 2015.","chicago":"Chatterjee, Krishnendu, Thomas A Henzinger, Barbara Jobstmann, and Rohit Singh. “Measuring and Synthesizing Systems in Probabilistic Environments.” <i>Journal of the ACM</i>. ACM, 2015. <a href=\"https://doi.org/10.1145/2699430\">https://doi.org/10.1145/2699430</a>.","mla":"Chatterjee, Krishnendu, et al. “Measuring and Synthesizing Systems in Probabilistic Environments.” <i>Journal of the ACM</i>, vol. 62, no. 1, 9, ACM, 2015, doi:<a href=\"https://doi.org/10.1145/2699430\">10.1145/2699430</a>.","short":"K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, Journal of the ACM 62 (2015).","ama":"Chatterjee K, Henzinger TA, Jobstmann B, Singh R. Measuring and synthesizing systems in probabilistic environments. <i>Journal of the ACM</i>. 2015;62(1). doi:<a href=\"https://doi.org/10.1145/2699430\">10.1145/2699430</a>","apa":"Chatterjee, K., Henzinger, T. A., Jobstmann, B., &#38; Singh, R. (2015). Measuring and synthesizing systems in probabilistic environments. <i>Journal of the ACM</i>. ACM. <a href=\"https://doi.org/10.1145/2699430\">https://doi.org/10.1145/2699430</a>","ista":"Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2015. Measuring and synthesizing systems in probabilistic environments. Journal of the ACM. 62(1), 9."},"type":"journal_article","volume":62,"publication":"Journal of the ACM","intvolume":"        62","quality_controlled":"1","language":[{"iso":"eng"}],"doi":"10.1145/2699430","day":"01","main_file_link":[{"url":"https://arxiv.org/abs/1004.0739","open_access":"1"}],"article_number":"9","date_published":"2015-02-01T00:00:00Z","date_updated":"2025-09-23T09:33:01Z","_id":"1856","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2015","publist_id":"5244","month":"02","ec_funded":1},{"language":[{"iso":"eng"}],"quality_controlled":"1","citation":{"apa":"Pentina, A., Sharmanska, V., &#38; Lampert, C. (2015). Curriculum learning of multiple tasks (pp. 5492–5500). Presented at the CVPR: Computer Vision and Pattern Recognition, Boston, MA, United States: IEEE. <a href=\"https://doi.org/10.1109/CVPR.2015.7299188\">https://doi.org/10.1109/CVPR.2015.7299188</a>","ista":"Pentina A, Sharmanska V, Lampert C. 2015. Curriculum learning of multiple tasks. CVPR: Computer Vision and Pattern Recognition, 5492–5500.","ieee":"A. Pentina, V. Sharmanska, and C. Lampert, “Curriculum learning of multiple tasks,” presented at the CVPR: Computer Vision and Pattern Recognition, Boston, MA, United States, 2015, pp. 5492–5500.","ama":"Pentina A, Sharmanska V, Lampert C. Curriculum learning of multiple tasks. In: IEEE; 2015:5492-5500. doi:<a href=\"https://doi.org/10.1109/CVPR.2015.7299188\">10.1109/CVPR.2015.7299188</a>","short":"A. Pentina, V. Sharmanska, C. Lampert, in:, IEEE, 2015, pp. 5492–5500.","chicago":"Pentina, Anastasia, Viktoriia Sharmanska, and Christoph Lampert. “Curriculum Learning of Multiple Tasks,” 5492–5500. IEEE, 2015. <a href=\"https://doi.org/10.1109/CVPR.2015.7299188\">https://doi.org/10.1109/CVPR.2015.7299188</a>.","mla":"Pentina, Anastasia, et al. <i>Curriculum Learning of Multiple Tasks</i>. IEEE, 2015, pp. 5492–500, doi:<a href=\"https://doi.org/10.1109/CVPR.2015.7299188\">10.1109/CVPR.2015.7299188</a>."},"type":"conference","date_published":"2015-06-01T00:00:00Z","main_file_link":[{"url":"http://arxiv.org/abs/1412.1353","open_access":"1"}],"day":"01","doi":"10.1109/CVPR.2015.7299188","year":"2015","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1857","date_updated":"2025-06-11T07:19:52Z","publist_id":"5243","month":"06","external_id":{"arxiv":["1412.1353"]},"abstract":[{"text":"Sharing information between multiple tasks enables algorithms to achieve good generalization performance even from small amounts of training data. However, in a realistic scenario of multi-task learning not all tasks are equally related to each other, hence it could be advantageous to transfer information only between the most related tasks. In this work we propose an approach that processes multiple tasks in a sequence with sharing between subsequent tasks instead of solving all tasks jointly. Subsequently, we address the question of curriculum learning of tasks, i.e. finding the best order of tasks to be learned. Our approach is based on a generalization bound criterion for choosing the task order that optimizes the average expected classification performance over all tasks. Our experimental results show that learning multiple related tasks sequentially can be more effective than learning them jointly, the order in which tasks are being solved affects the overall performance, and that our model is able to automatically discover the favourable order of tasks. ","lang":"eng"}],"page":"5492 - 5500","date_created":"2018-12-11T11:54:23Z","publication_status":"published","oa_version":"Preprint","article_processing_charge":"No","title":"Curriculum learning of multiple tasks","arxiv":1,"oa":1,"conference":{"location":"Boston, MA, United States","start_date":"2015-06-07","end_date":"2015-06-12","name":"CVPR: Computer Vision and Pattern Recognition"},"scopus_import":"1","status":"public","department":[{"_id":"ChLa"}],"publisher":"IEEE","author":[{"full_name":"Pentina, Anastasia","first_name":"Anastasia","id":"42E87FC6-F248-11E8-B48F-1D18A9856A87","last_name":"Pentina"},{"orcid":"0000-0003-0192-9308","full_name":"Sharmanska, Viktoriia","last_name":"Sharmanska","id":"2EA6D09E-F248-11E8-B48F-1D18A9856A87","first_name":"Viktoriia"},{"full_name":"Lampert, Christoph","orcid":"0000-0001-8622-7887","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","first_name":"Christoph","last_name":"Lampert"}],"corr_author":"1"},{"doi":"10.1109/CVPR.2015.7298696","publication_status":"published","oa_version":"Preprint","date_created":"2018-12-11T11:54:24Z","date_published":"2015-10-15T00:00:00Z","main_file_link":[{"url":"https://arxiv.org/abs/1406.5362","open_access":"1"}],"title":"Predicting the future behavior of a time-varying probability distribution","day":"15","arxiv":1,"external_id":{"arxiv":["1406.5362"]},"abstract":[{"text":"We study the problem of predicting the future, though only in the probabilistic sense of estimating a future state of a time-varying probability distribution. This is not only an interesting academic problem, but solving this extrapolation problem also has many practical application, e.g. for training classifiers that have to operate under time-varying conditions. Our main contribution is a method for predicting the next step of the time-varying distribution from a given sequence of sample sets from earlier time steps. For this we rely on two recent machine learning techniques: embedding probability distributions into a reproducing kernel Hilbert space, and learning operators by vector-valued regression. We illustrate the working principles and the practical usefulness of our method by experiments on synthetic and real data. We also highlight an exemplary application: training a classifier in a domain adaptation setting without having access to examples from the test time distribution at training time.","lang":"eng"}],"type":"conference","page":"942 - 950","citation":{"ieee":"C. Lampert, “Predicting the future behavior of a time-varying probability distribution,” presented at the CVPR: Computer Vision and Pattern Recognition, Boston, MA, United States, 2015, pp. 942–950.","short":"C. Lampert, in:, IEEE, 2015, pp. 942–950.","ama":"Lampert C. Predicting the future behavior of a time-varying probability distribution. In: IEEE; 2015:942-950. doi:<a href=\"https://doi.org/10.1109/CVPR.2015.7298696\">10.1109/CVPR.2015.7298696</a>","chicago":"Lampert, Christoph. “Predicting the Future Behavior of a Time-Varying Probability Distribution,” 942–50. IEEE, 2015. <a href=\"https://doi.org/10.1109/CVPR.2015.7298696\">https://doi.org/10.1109/CVPR.2015.7298696</a>.","mla":"Lampert, Christoph. <i>Predicting the Future Behavior of a Time-Varying Probability Distribution</i>. IEEE, 2015, pp. 942–50, doi:<a href=\"https://doi.org/10.1109/CVPR.2015.7298696\">10.1109/CVPR.2015.7298696</a>.","apa":"Lampert, C. (2015). Predicting the future behavior of a time-varying probability distribution (pp. 942–950). Presented at the CVPR: Computer Vision and Pattern Recognition, Boston, MA, United States: IEEE. <a href=\"https://doi.org/10.1109/CVPR.2015.7298696\">https://doi.org/10.1109/CVPR.2015.7298696</a>","ista":"Lampert C. 2015. Predicting the future behavior of a time-varying probability distribution. CVPR: Computer Vision and Pattern Recognition, 942–950."},"language":[{"iso":"eng"}],"quality_controlled":"1","publist_id":"5241","corr_author":"1","month":"10","author":[{"first_name":"Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","last_name":"Lampert","full_name":"Lampert, Christoph","orcid":"0000-0001-8622-7887"}],"department":[{"_id":"ChLa"}],"publisher":"IEEE","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1858","date_updated":"2024-10-09T20:56:24Z","year":"2015","oa":1,"scopus_import":1,"conference":{"end_date":"2015-06-12","name":"CVPR: Computer Vision and Pattern Recognition","location":"Boston, MA, United States","start_date":"2015-06-07"}},{"oa_version":"Preprint","publication_status":"published","date_created":"2018-12-11T11:54:24Z","arxiv":1,"title":"A multi-plane block-coordinate Frank-Wolfe algorithm for training structural SVMs with a costly max-oracle","article_processing_charge":"No","page":"2737 - 2745","abstract":[{"lang":"eng","text":"Structural support vector machines (SSVMs) are amongst the best performing models for structured computer vision tasks, such as semantic image segmentation or human pose estimation. Training SSVMs, however, is computationally costly, because it requires repeated calls to a structured prediction subroutine (called \\emph{max-oracle}), which has to solve an optimization problem itself, e.g. a graph cut.\r\nIn this work, we introduce a new algorithm for SSVM training that is more efficient than earlier techniques when the max-oracle is computationally expensive, as it is frequently the case in computer vision tasks. The main idea is to (i) combine the recent stochastic Block-Coordinate Frank-Wolfe algorithm with efficient hyperplane caching, and (ii) use an automatic selection rule for deciding whether to call the exact max-oracle or to rely on an approximate one based on the cached hyperplanes.\r\nWe show experimentally that this strategy leads to faster convergence to the optimum with respect to the number of requires oracle calls, and that this translates into faster convergence with respect to the total runtime when the max-oracle is slow compared to the other steps of the algorithm. "}],"external_id":{"arxiv":["1408.6804"]},"corr_author":"1","author":[{"full_name":"Shah, Neel","id":"31ABAF80-F248-11E8-B48F-1D18A9856A87","first_name":"Neel","last_name":"Shah"},{"full_name":"Kolmogorov, Vladimir","last_name":"Kolmogorov","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","first_name":"Vladimir"},{"full_name":"Lampert, Christoph","orcid":"0000-0001-8622-7887","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","first_name":"Christoph","last_name":"Lampert"}],"project":[{"call_identifier":"FP7","name":"Lifelong Learning of Visual Scene Understanding","grant_number":"308036","_id":"2532554C-B435-11E9-9278-68D0E5697425"},{"_id":"25FBA906-B435-11E9-9278-68D0E5697425","grant_number":"616160","name":"Discrete Optimization in Computer Vision: Theory and Practice","call_identifier":"FP7"}],"publisher":"IEEE","department":[{"_id":"VlKo"},{"_id":"ChLa"}],"status":"public","scopus_import":"1","conference":{"start_date":"2015-06-07","location":"Boston, MA, USA","end_date":"2015-06-12","name":"CVPR: Computer Vision and Pattern Recognition"},"oa":1,"doi":"10.1109/CVPR.2015.7298890","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1408.6804"}],"date_published":"2015-06-01T00:00:00Z","day":"01","type":"conference","citation":{"ista":"Shah N, Kolmogorov V, Lampert C. 2015. A multi-plane block-coordinate Frank-Wolfe algorithm for training structural SVMs with a costly max-oracle. CVPR: Computer Vision and Pattern Recognition, 2737–2745.","apa":"Shah, N., Kolmogorov, V., &#38; Lampert, C. (2015). A multi-plane block-coordinate Frank-Wolfe algorithm for training structural SVMs with a costly max-oracle (pp. 2737–2745). Presented at the CVPR: Computer Vision and Pattern Recognition, Boston, MA, USA: IEEE. <a href=\"https://doi.org/10.1109/CVPR.2015.7298890\">https://doi.org/10.1109/CVPR.2015.7298890</a>","mla":"Shah, Neel, et al. <i>A Multi-Plane Block-Coordinate Frank-Wolfe Algorithm for Training Structural SVMs with a Costly Max-Oracle</i>. IEEE, 2015, pp. 2737–45, doi:<a href=\"https://doi.org/10.1109/CVPR.2015.7298890\">10.1109/CVPR.2015.7298890</a>.","chicago":"Shah, Neel, Vladimir Kolmogorov, and Christoph Lampert. “A Multi-Plane Block-Coordinate Frank-Wolfe Algorithm for Training Structural SVMs with a Costly Max-Oracle,” 2737–45. IEEE, 2015. <a href=\"https://doi.org/10.1109/CVPR.2015.7298890\">https://doi.org/10.1109/CVPR.2015.7298890</a>.","ama":"Shah N, Kolmogorov V, Lampert C. A multi-plane block-coordinate Frank-Wolfe algorithm for training structural SVMs with a costly max-oracle. In: IEEE; 2015:2737-2745. doi:<a href=\"https://doi.org/10.1109/CVPR.2015.7298890\">10.1109/CVPR.2015.7298890</a>","short":"N. Shah, V. Kolmogorov, C. Lampert, in:, IEEE, 2015, pp. 2737–2745.","ieee":"N. Shah, V. Kolmogorov, and C. Lampert, “A multi-plane block-coordinate Frank-Wolfe algorithm for training structural SVMs with a costly max-oracle,” presented at the CVPR: Computer Vision and Pattern Recognition, Boston, MA, USA, 2015, pp. 2737–2745."},"quality_controlled":"1","language":[{"iso":"eng"}],"month":"06","publist_id":"5240","ec_funded":1,"_id":"1859","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-06-11T07:20:12Z","year":"2015"},{"doi":"10.1109/CVPR.2015.7298746","day":"01","title":"Classifier adaptation at prediction time","main_file_link":[{"open_access":"1","url":"http://www.cv-foundation.org/openaccess/content_cvpr_2015/papers/Royer_Classifier_Adaptation_at_2015_CVPR_paper.pdf"}],"publication_status":"published","date_published":"2015-06-01T00:00:00Z","oa_version":"Submitted Version","date_created":"2018-12-11T11:54:24Z","type":"conference","citation":{"apa":"Royer, A., &#38; Lampert, C. (2015). Classifier adaptation at prediction time (pp. 1401–1409). Presented at the CVPR: Computer Vision and Pattern Recognition, Boston, MA, United States: IEEE. <a href=\"https://doi.org/10.1109/CVPR.2015.7298746\">https://doi.org/10.1109/CVPR.2015.7298746</a>","ista":"Royer A, Lampert C. 2015. Classifier adaptation at prediction time. CVPR: Computer Vision and Pattern Recognition, 1401–1409.","ieee":"A. Royer and C. Lampert, “Classifier adaptation at prediction time,” presented at the CVPR: Computer Vision and Pattern Recognition, Boston, MA, United States, 2015, pp. 1401–1409.","chicago":"Royer, Amélie, and Christoph Lampert. “Classifier Adaptation at Prediction Time,” 1401–9. IEEE, 2015. <a href=\"https://doi.org/10.1109/CVPR.2015.7298746\">https://doi.org/10.1109/CVPR.2015.7298746</a>.","mla":"Royer, Amélie, and Christoph Lampert. <i>Classifier Adaptation at Prediction Time</i>. IEEE, 2015, pp. 1401–09, doi:<a href=\"https://doi.org/10.1109/CVPR.2015.7298746\">10.1109/CVPR.2015.7298746</a>.","ama":"Royer A, Lampert C. Classifier adaptation at prediction time. In: IEEE; 2015:1401-1409. doi:<a href=\"https://doi.org/10.1109/CVPR.2015.7298746\">10.1109/CVPR.2015.7298746</a>","short":"A. Royer, C. Lampert, in:, IEEE, 2015, pp. 1401–1409."},"page":"1401 - 1409","abstract":[{"text":"Classifiers for object categorization are usually evaluated by their accuracy on a set of i.i.d. test examples. This provides us with an estimate of the expected error when applying the classifiers to a single new image. In real application, however, classifiers are rarely only used for a single image and then discarded. Instead, they are applied sequentially to many images, and these are typically not i.i.d. samples from a fixed data distribution, but they carry dependencies and their class distribution varies over time. In this work, we argue that the phenomenon of correlated data at prediction time is not a nuisance, but a blessing in disguise. We describe a probabilistic method for adapting classifiers at prediction time without having to retrain them. We also introduce a framework for creating realistically distributed image sequences, which offers a way to benchmark classifier adaptation methods, such as the one we propose. Experiments on the ILSVRC2010 and ILSVRC2012 datasets show that adapting object classification systems at prediction time can significantly reduce their error rate, even with no additional human feedback.","lang":"eng"}],"quality_controlled":"1","language":[{"iso":"eng"}],"publist_id":"5239","author":[{"full_name":"Royer, Amélie","first_name":"Amélie","last_name":"Royer"},{"first_name":"Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","last_name":"Lampert","orcid":"0000-0001-8622-7887","full_name":"Lampert, Christoph"}],"month":"06","project":[{"_id":"2532554C-B435-11E9-9278-68D0E5697425","name":"Lifelong Learning of Visual Scene Understanding","grant_number":"308036","call_identifier":"FP7"}],"ec_funded":1,"publisher":"IEEE","department":[{"_id":"ChLa"}],"date_updated":"2021-01-12T06:53:41Z","_id":"1860","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","scopus_import":1,"conference":{"start_date":"2015-06-07","location":"Boston, MA, United States","name":"CVPR: Computer Vision and Pattern Recognition","end_date":"2015-06-12"},"year":"2015","oa":1}]