[{"volume":32,"quality_controlled":"1","citation":{"ista":"Pokrass J, Bronstein AM, Bronstein MM, Sprechmann P, Sapiro G. 2013. Sparse modeling of intrinsic correspondences. Computer Graphics Forum. 32(2pt4), 459–468.","ieee":"J. Pokrass, A. M. Bronstein, M. M. Bronstein, P. Sprechmann, and G. Sapiro, “Sparse modeling of intrinsic correspondences,” <i>Computer Graphics Forum</i>, vol. 32, no. 2pt4. Wiley, pp. 459–468, 2013.","chicago":"Pokrass, J., Alex M. Bronstein, M. M. Bronstein, P. Sprechmann, and G. Sapiro. “Sparse Modeling of Intrinsic Correspondences.” <i>Computer Graphics Forum</i>. Wiley, 2013. <a href=\"https://doi.org/10.1111/cgf.12066\">https://doi.org/10.1111/cgf.12066</a>.","short":"J. Pokrass, A.M. Bronstein, M.M. Bronstein, P. Sprechmann, G. Sapiro, Computer Graphics Forum 32 (2013) 459–468.","ama":"Pokrass J, Bronstein AM, Bronstein MM, Sprechmann P, Sapiro G. Sparse modeling of intrinsic correspondences. <i>Computer Graphics Forum</i>. 2013;32(2pt4):459-468. doi:<a href=\"https://doi.org/10.1111/cgf.12066\">10.1111/cgf.12066</a>","apa":"Pokrass, J., Bronstein, A. M., Bronstein, M. M., Sprechmann, P., &#38; Sapiro, G. (2013). Sparse modeling of intrinsic correspondences. <i>Computer Graphics Forum</i>. Wiley. <a href=\"https://doi.org/10.1111/cgf.12066\">https://doi.org/10.1111/cgf.12066</a>","mla":"Pokrass, J., et al. “Sparse Modeling of Intrinsic Correspondences.” <i>Computer Graphics Forum</i>, vol. 32, no. 2pt4, Wiley, 2013, pp. 459–68, doi:<a href=\"https://doi.org/10.1111/cgf.12066\">10.1111/cgf.12066</a>."},"publisher":"Wiley","intvolume":"        32","oa_version":"Preprint","external_id":{"arxiv":["1209.6560"]},"publication_status":"published","language":[{"iso":"eng"}],"author":[{"first_name":"J.","last_name":"Pokrass","full_name":"Pokrass, J."},{"last_name":"Bronstein","orcid":"0000-0001-9699-8730","full_name":"Bronstein, Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","first_name":"Alexander"},{"first_name":"M. M.","full_name":"Bronstein, M. M.","last_name":"Bronstein"},{"first_name":"P.","last_name":"Sprechmann","full_name":"Sprechmann, P."},{"last_name":"Sapiro","full_name":"Sapiro, G.","first_name":"G."}],"article_processing_charge":"No","_id":"18422","page":"459-468","oa":1,"arxiv":1,"year":"2013","scopus_import":"1","type":"journal_article","status":"public","issue":"2pt4","abstract":[{"text":"We present a novel sparse modeling approach to non-rigid shape matching using only the ability to detect repeatable regions. As the input to our algorithm, we are given only two sets of regions in two shapes; no descriptors are provided so the correspondence between the regions is not know, nor we know how many regions correspond in the two shapes. We show that even with such scarce information, it is possible to establish very accurate correspondence between the shapes by using methods from the field of sparse modeling, being this, the first non-trivial use of sparse models in shape correspondence. We formulate the problem of permuted sparse coding, in which we solve simultaneously for an unknown permutation ordering the regions on two shapes and for an unknown correspondence in functional representation. We also propose a robust variant capable of handling incomplete matches. Numerically, the problem is solved efficiently by alternating the solution of a linear assignment and a sparse coding problem. The proposed methods are evaluated qualitatively and quantitatively on standard benchmarks containing both synthetic and scanned objects.","lang":"eng"}],"day":"01","extern":"1","date_published":"2013-05-01T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1209.6560"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","date_created":"2024-10-15T11:20:55Z","publication":"Computer Graphics Forum","month":"05","publication_identifier":{"issn":["0167-7055"],"eissn":["1467-8659"]},"title":"Sparse modeling of intrinsic correspondences","doi":"10.1111/cgf.12066","date_updated":"2024-12-19T09:57:17Z"},{"intvolume":"         3","volume":3,"citation":{"mla":"Gazy, Inbal, et al. “A Genetic Screen for High Copy Number Suppressors of the Synthetic Lethality between Elg1Δ and Srs2Δ in Yeast.” <i> G3: Genes, Genomes, Genetics</i>, vol. 3, no. 5, Oxford University Press, 2013, pp. 917–26, doi:<a href=\"https://doi.org/10.1534/g3.113.005561\">10.1534/g3.113.005561</a>.","apa":"Gazy, I., Liefshitz, B., Bronstein, A. M., Parnas, O., Atias, N., Sharan, R., &#38; Kupiec, M. (2013). A genetic screen for high copy number suppressors of the synthetic lethality between elg1Δ and srs2Δ in yeast. <i> G3: Genes, Genomes, Genetics</i>. Oxford University Press. <a href=\"https://doi.org/10.1534/g3.113.005561\">https://doi.org/10.1534/g3.113.005561</a>","ama":"Gazy I, Liefshitz B, Bronstein AM, et al. A genetic screen for high copy number suppressors of the synthetic lethality between elg1Δ and srs2Δ in yeast. <i> G3: Genes, Genomes, Genetics</i>. 2013;3(5):917-926. doi:<a href=\"https://doi.org/10.1534/g3.113.005561\">10.1534/g3.113.005561</a>","short":"I. Gazy, B. Liefshitz, A.M. Bronstein, O. Parnas, N. Atias, R. Sharan, M. Kupiec,  G3: Genes, Genomes, Genetics 3 (2013) 917–926.","ista":"Gazy I, Liefshitz B, Bronstein AM, Parnas O, Atias N, Sharan R, Kupiec M. 2013. A genetic screen for high copy number suppressors of the synthetic lethality between elg1Δ and srs2Δ in yeast.  G3: Genes, Genomes, Genetics. 3(5), 917–926.","ieee":"I. Gazy <i>et al.</i>, “A genetic screen for high copy number suppressors of the synthetic lethality between elg1Δ and srs2Δ in yeast,” <i> G3: Genes, Genomes, Genetics</i>, vol. 3, no. 5. Oxford University Press, pp. 917–926, 2013.","chicago":"Gazy, Inbal, Batia Liefshitz, Alex M. Bronstein, Oren Parnas, Nir Atias, Roded Sharan, and Martin Kupiec. “A Genetic Screen for High Copy Number Suppressors of the Synthetic Lethality between Elg1Δ and Srs2Δ in Yeast.” <i> G3: Genes, Genomes, Genetics</i>. Oxford University Press, 2013. <a href=\"https://doi.org/10.1534/g3.113.005561\">https://doi.org/10.1534/g3.113.005561</a>."},"publisher":"Oxford University Press","quality_controlled":"1","DOAJ_listed":"1","_id":"18437","article_processing_charge":"No","page":"917-926","author":[{"last_name":"Gazy","full_name":"Gazy, Inbal","first_name":"Inbal"},{"first_name":"Batia","last_name":"Liefshitz","full_name":"Liefshitz, Batia"},{"last_name":"Bronstein","orcid":"0000-0001-9699-8730","full_name":"Bronstein, Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","first_name":"Alexander"},{"last_name":"Parnas","full_name":"Parnas, Oren","first_name":"Oren"},{"last_name":"Atias","full_name":"Atias, Nir","first_name":"Nir"},{"first_name":"Roded","full_name":"Sharan, Roded","last_name":"Sharan"},{"last_name":"Kupiec","full_name":"Kupiec, Martin","first_name":"Martin"}],"language":[{"iso":"eng"}],"oa_version":"Published Version","publication_status":"published","day":"01","extern":"1","abstract":[{"lang":"eng","text":"\r\n\r\nElg1 and Srs2 are two proteins involved in maintaining genome stability in yeast. After DNA damage, the homotrimeric clamp PCNA, which provides stability and processivity to DNA polymerases and serves as a docking platform for DNA repair enzymes, undergoes modification by the ubiquitin-like molecule SUMO. PCNA SUMOylation helps recruit Srs2 and Elg1 to the replication fork. In the absence of Elg1, both SUMOylated PCNA and Srs2 accumulate at the chromatin fraction, indicating that Elg1 is required for removing SUMOylated PCNA and Srs2 from DNA. Despite this interaction, which suggests that the two proteins work together, double mutants elg1Δ srs2Δ have severely impaired growth as haploids and exhibit synergistic sensitivity to DNA damage and a synergistic increase in gene conversion. In addition, diploid elg1Δ srs2Δ double mutants are dead, which implies that an essential function in the cell requires at least one of the two gene products for survival. To gain information about this essential function, we have carried out a high copy number suppressor screen to search for genes that, when overexpressed, suppress the synthetic lethality between elg1Δ and srs2Δ. We report the identification of 36 such genes, which are enriched for functions related to DNA- and chromatin-binding, chromatin packaging and modification, and mRNA export from the nucleus."}],"date_published":"2013-05-01T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1534/g3.113.005561"}],"year":"2013","oa":1,"status":"public","type":"journal_article","issue":"5","scopus_import":"1","publication_identifier":{"eissn":["2160-1836"]},"month":"05","title":"A genetic screen for high copy number suppressors of the synthetic lethality between elg1Δ and srs2Δ in yeast","date_created":"2024-10-15T11:20:55Z","publication":" G3: Genes, Genomes, Genetics","date_updated":"2024-12-18T15:30:20Z","doi":"10.1534/g3.113.005561","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87"},{"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","oa_version":"None","publication_status":"published","publication_identifier":{"eissn":["2079-7338"],"issn":["1004-8979"]},"month":"02","title":"Geometric and photometric data fusion in non-rigid shape analysis","publication":"Numerical Mathematics: Theory, Methods and Applications","date_created":"2024-10-15T11:20:55Z","page":"199-222","date_updated":"2024-12-19T15:09:21Z","_id":"18440","article_processing_charge":"No","author":[{"id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","first_name":"Alexander","full_name":"Bronstein, Alexander","orcid":"0000-0001-9699-8730","last_name":"Bronstein"},{"first_name":"Artiom","last_name":"Kovnatsky","full_name":"Kovnatsky, Artiom"},{"first_name":"Dan","full_name":"Raviv, Dan","last_name":"Raviv"},{"first_name":"Michael M.","last_name":"Bronstein","full_name":"Bronstein, Michael M."},{"first_name":"Ron","full_name":"Kimmel, Ron","last_name":"Kimmel"}],"language":[{"iso":"eng"}],"doi":"10.4208/nmtma.2013.mssvm11","year":"2013","volume":6,"publisher":"Global Science Press","issue":"1","status":"public","type":"journal_article","citation":{"mla":"Bronstein, Alex M., et al. “Geometric and Photometric Data Fusion in Non-Rigid Shape Analysis.” <i>Numerical Mathematics: Theory, Methods and Applications</i>, vol. 6, no. 1, Global Science Press, 2013, pp. 199–222, doi:<a href=\"https://doi.org/10.4208/nmtma.2013.mssvm11\">10.4208/nmtma.2013.mssvm11</a>.","apa":"Bronstein, A. M., Kovnatsky, A., Raviv, D., Bronstein, M. M., &#38; Kimmel, R. (2013). Geometric and photometric data fusion in non-rigid shape analysis. <i>Numerical Mathematics: Theory, Methods and Applications</i>. Global Science Press. <a href=\"https://doi.org/10.4208/nmtma.2013.mssvm11\">https://doi.org/10.4208/nmtma.2013.mssvm11</a>","ista":"Bronstein AM, Kovnatsky A, Raviv D, Bronstein MM, Kimmel R. 2013. Geometric and photometric data fusion in non-rigid shape analysis. Numerical Mathematics: Theory, Methods and Applications. 6(1), 199–222.","chicago":"Bronstein, Alex M., Artiom Kovnatsky, Dan Raviv, Michael M. Bronstein, and Ron Kimmel. “Geometric and Photometric Data Fusion in Non-Rigid Shape Analysis.” <i>Numerical Mathematics: Theory, Methods and Applications</i>. Global Science Press, 2013. <a href=\"https://doi.org/10.4208/nmtma.2013.mssvm11\">https://doi.org/10.4208/nmtma.2013.mssvm11</a>.","ieee":"A. M. Bronstein, A. Kovnatsky, D. Raviv, M. M. Bronstein, and R. Kimmel, “Geometric and photometric data fusion in non-rigid shape analysis,” <i>Numerical Mathematics: Theory, Methods and Applications</i>, vol. 6, no. 1. Global Science Press, pp. 199–222, 2013.","ama":"Bronstein AM, Kovnatsky A, Raviv D, Bronstein MM, Kimmel R. Geometric and photometric data fusion in non-rigid shape analysis. <i>Numerical Mathematics: Theory, Methods and Applications</i>. 2013;6(1):199-222. doi:<a href=\"https://doi.org/10.4208/nmtma.2013.mssvm11\">10.4208/nmtma.2013.mssvm11</a>","short":"A.M. Bronstein, A. Kovnatsky, D. Raviv, M.M. Bronstein, R. Kimmel, Numerical Mathematics: Theory, Methods and Applications 6 (2013) 199–222."},"scopus_import":"1","quality_controlled":"1","day":"01","extern":"1","abstract":[{"lang":"eng","text":"In this paper, we explore the use of the diffusion geometry framework for the fusion of geometric and photometric information in local and global shape descriptors. Our construction is based on the definition of a diffusion process on the shape manifold embedded into a high-dimensional space where the embedding coordinates represent the photometric information. Experimental results show that such data fusion is useful in coping with different challenges of shape analysis where pure geometric and pure photometric methods fail."}],"intvolume":"         6","date_published":"2013-02-01T00:00:00Z"},{"intvolume":"         6","date_published":"2013-02-01T00:00:00Z","abstract":[{"lang":"eng","text":"Partial similarity of shapes is a challenging problem arising in many important applications in computer vision, shape analysis, and graphics, e.g. when one has to deal with partial information and acquisition artifacts. The problem is especially hard when the underlying shapes are non-rigid and are given up to a deformation. Partial matching is usually approached by computing local descriptors on a pair of shapes and then establishing a point-wise non-bijective correspondence between the two, taking into account possibly different parts. In this paper, we introduce an alternative correspondence-less approach to matching fragments to an entire shape undergoing a non-rigid deformation. We use region-wise local descriptors and optimize over the integration domains on which the integral descriptors of the two parts match. The problem is regularized using the Mumford-Shah functional. We show an efficient discretization based on the Ambrosio-Tortorelli approximation generalized to triangular point clouds and meshes, and present experiments demonstrating the success of the proposed method."}],"day":"01","extern":"1","scopus_import":"1","quality_controlled":"1","publisher":"Global Science Press","issue":"1","type":"journal_article","status":"public","citation":{"ama":"Bronstein AM, Pokrass J, Bronstein MM. Partial shape matching without point-wise correspondence. <i>Numerical Mathematics: Theory, Methods and Applications</i>. 2013;6(1):223-244. doi:<a href=\"https://doi.org/10.4208/nmtma.2013.mssvm12\">10.4208/nmtma.2013.mssvm12</a>","short":"A.M. Bronstein, J. Pokrass, M.M. Bronstein, Numerical Mathematics: Theory, Methods and Applications 6 (2013) 223–244.","chicago":"Bronstein, Alex M., Jonathan  Pokrass, and Michael M. Bronstein. “Partial Shape Matching without Point-Wise Correspondence.” <i>Numerical Mathematics: Theory, Methods and Applications</i>. Global Science Press, 2013. <a href=\"https://doi.org/10.4208/nmtma.2013.mssvm12\">https://doi.org/10.4208/nmtma.2013.mssvm12</a>.","ieee":"A. M. Bronstein, J. Pokrass, and M. M. Bronstein, “Partial shape matching without point-wise correspondence,” <i>Numerical Mathematics: Theory, Methods and Applications</i>, vol. 6, no. 1. Global Science Press, pp. 223–244, 2013.","ista":"Bronstein AM, Pokrass J, Bronstein MM. 2013. Partial shape matching without point-wise correspondence. Numerical Mathematics: Theory, Methods and Applications. 6(1), 223–244.","apa":"Bronstein, A. M., Pokrass, J., &#38; Bronstein, M. M. (2013). Partial shape matching without point-wise correspondence. <i>Numerical Mathematics: Theory, Methods and Applications</i>. Global Science Press. <a href=\"https://doi.org/10.4208/nmtma.2013.mssvm12\">https://doi.org/10.4208/nmtma.2013.mssvm12</a>","mla":"Bronstein, Alex M., et al. “Partial Shape Matching without Point-Wise Correspondence.” <i>Numerical Mathematics: Theory, Methods and Applications</i>, vol. 6, no. 1, Global Science Press, 2013, pp. 223–44, doi:<a href=\"https://doi.org/10.4208/nmtma.2013.mssvm12\">10.4208/nmtma.2013.mssvm12</a>."},"volume":6,"year":"2013","author":[{"id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","first_name":"Alexander","last_name":"Bronstein","orcid":"0000-0001-9699-8730","full_name":"Bronstein, Alexander"},{"first_name":"Jonathan ","full_name":"Pokrass, Jonathan ","last_name":"Pokrass"},{"first_name":"Michael M.","last_name":"Bronstein","full_name":"Bronstein, Michael M."}],"language":[{"iso":"eng"}],"doi":"10.4208/nmtma.2013.mssvm12","page":"223-244","date_updated":"2024-12-19T14:44:37Z","_id":"18441","article_processing_charge":"No","publication":"Numerical Mathematics: Theory, Methods and Applications","date_created":"2024-10-15T11:20:55Z","publication_identifier":{"issn":["1004-8979"],"eissn":["2079-7338"]},"title":"Partial shape matching without point-wise correspondence","month":"02","publication_status":"published","oa_version":"None","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87"},{"month":"09","title":"An evaluation of approaches for modelling hydrological processes in high-elevation, glacierized Andean watersheds","publication_identifier":{"issn":["0885-6087"]},"date_created":"2023-02-20T08:16:39Z","publication":"Hydrological Processes","date_updated":"2023-02-24T08:48:40Z","doi":"10.1002/hyp.10055","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["Water Science and Technology"],"extern":"1","day":"06","abstract":[{"lang":"eng","text":"We use two hydrological models of varying complexity to study the Juncal River Basin in the Central Andes of Chile with the aim to understand the degree of conceptualization and the spatial structure that are needed to model present and future streamflows. We use a conceptual semi-distributed model based on elevation bands [Water Evaluation and Planning (WEAP)], frequently used for water management, and a physically oriented, fully distributed model [Topographic Kinematic Wave Approximation and Integration ETH Zurich (TOPKAPI-ETH)] developed for research purposes mainly. We evaluate the ability of the two models to reproduce the key hydrological processes in the basin with emphasis on snow accumulation and melt, streamflow and the relationships between internal processes. Both models are capable of reproducing observed runoff and the evolution of Moderate-resolution Imaging Spectroradiometer snow cover adequately. In spite of WEAP's simple and conceptual approach for modelling snowmelt and its lack of glacier representation and snow gravitational redistribution as well as a proper routing algorithm, this model can reproduce historical data with a similar goodness of fit as the more complex TOPKAPI-ETH. We show that the performance of both models can be improved by using measured precipitation gradients of higher temporal resolution. In contrast to the good performance of the conceptual model for the present climate, however, we demonstrate that the simplifications in WEAP lead to error compensation, which results in different predictions in simulated melt and runoff for a potentially warmer future climate. TOPKAPI-ETH, using a more physical representation of processes, depends less on calibration and thus is less subject to a compensation of errors through different model components. Our results show that data obtained locally in ad hoc short-term field campaigns are needed to complement data extrapolated from long-term records for simulating changes in the water cycle of high-elevation catchments but that these data can only be efficiently used by a model applying a spatially distributed physical representation of hydrological processes."}],"date_published":"2013-09-06T00:00:00Z","year":"2013","status":"public","type":"journal_article","issue":"23","scopus_import":"1","article_processing_charge":"No","_id":"12633","page":"5674-5695","language":[{"iso":"eng"}],"author":[{"first_name":"S.","last_name":"Ragettli","full_name":"Ragettli, S."},{"first_name":"G.","last_name":"Cortés","full_name":"Cortés, G."},{"full_name":"McPhee, J.","last_name":"McPhee","first_name":"J."},{"full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"}],"oa_version":"None","publication_status":"published","article_type":"original","intvolume":"        28","volume":28,"citation":{"apa":"Ragettli, S., Cortés, G., McPhee, J., &#38; Pellicciotti, F. (2013). An evaluation of approaches for modelling hydrological processes in high-elevation, glacierized Andean watersheds. <i>Hydrological Processes</i>. Wiley. <a href=\"https://doi.org/10.1002/hyp.10055\">https://doi.org/10.1002/hyp.10055</a>","mla":"Ragettli, S., et al. “An Evaluation of Approaches for Modelling Hydrological Processes in High-Elevation, Glacierized Andean Watersheds.” <i>Hydrological Processes</i>, vol. 28, no. 23, Wiley, 2013, pp. 5674–95, doi:<a href=\"https://doi.org/10.1002/hyp.10055\">10.1002/hyp.10055</a>.","ista":"Ragettli S, Cortés G, McPhee J, Pellicciotti F. 2013. An evaluation of approaches for modelling hydrological processes in high-elevation, glacierized Andean watersheds. Hydrological Processes. 28(23), 5674–5695.","ieee":"S. Ragettli, G. Cortés, J. McPhee, and F. Pellicciotti, “An evaluation of approaches for modelling hydrological processes in high-elevation, glacierized Andean watersheds,” <i>Hydrological Processes</i>, vol. 28, no. 23. Wiley, pp. 5674–5695, 2013.","chicago":"Ragettli, S., G. Cortés, J. McPhee, and Francesca Pellicciotti. “An Evaluation of Approaches for Modelling Hydrological Processes in High-Elevation, Glacierized Andean Watersheds.” <i>Hydrological Processes</i>. Wiley, 2013. <a href=\"https://doi.org/10.1002/hyp.10055\">https://doi.org/10.1002/hyp.10055</a>.","short":"S. Ragettli, G. Cortés, J. McPhee, F. Pellicciotti, Hydrological Processes 28 (2013) 5674–5695.","ama":"Ragettli S, Cortés G, McPhee J, Pellicciotti F. An evaluation of approaches for modelling hydrological processes in high-elevation, glacierized Andean watersheds. <i>Hydrological Processes</i>. 2013;28(23):5674-5695. doi:<a href=\"https://doi.org/10.1002/hyp.10055\">10.1002/hyp.10055</a>"},"publisher":"Wiley","quality_controlled":"1"},{"abstract":[{"lang":"eng","text":"Central Asian water resources largely depend on melt water generated in the Pamir and Tien Shan mountain ranges. To estimate future water availability in this region, it is necessary to use climate projections to estimate the future glacier extent and volume. In this study, we evaluate the impact of uncertainty in climate change projections on the future glacier extent in the Amu and Syr Darya river basins. To this end we use the latest climate change projections generated for the upcoming IPCC report (CMIP5) and, for comparison, projections used in the fourth IPCC assessment (CMIP3). With these projections we force a regionalized glacier mass balance model, and estimate changes in the basins' glacier extent as a function of the glacier size distribution in the basins and projected temperature and precipitation. This glacier mass balance model is specifically developed for implementation in large scale hydrological models, where the spatial resolution does not allow for simulating individual glaciers and data scarcity is an issue. Although the CMIP5 ensemble results in greater regional warming than the CMIP3 ensemble and the range in projections for temperature as well as precipitation is wider for the CMIP5 than for the CMIP3, the spread in projections of future glacier extent in Central Asia is similar for both ensembles. This is because differences in temperature rise are small during periods of maximum melt (July–September) while differences in precipitation change are small during the period of maximum accumulation (October–February). However, the model uncertainty due to parameter uncertainty is high, and has roughly the same importance as uncertainty in the climate projections. Uncertainty about the size of the decline in glacier extent remains large, making estimates of future Central Asian glacier evolution and downstream water availability uncertain."}],"extern":"1","day":"01","date_published":"2013-09-01T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5194/hess-17-3661-2013"}],"oa":1,"year":"2013","scopus_import":"1","type":"journal_article","status":"public","issue":"9","date_created":"2023-02-20T08:17:05Z","publication":"Hydrology and Earth System Sciences","title":"Comparison of climate change signals in CMIP3 and CMIP5 multi-model ensembles and implications for Central Asian glaciers","publication_identifier":{"issn":["1607-7938"]},"month":"09","doi":"10.5194/hess-17-3661-2013","date_updated":"2023-02-24T08:19:48Z","keyword":["General Earth and Planetary Sciences","General Engineering","General Environmental Science"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","intvolume":"        17","volume":17,"quality_controlled":"1","citation":{"ista":"Lutz AF, Immerzeel WW, Gobiet A, Pellicciotti F, Bierkens MFP. 2013. Comparison of climate change signals in CMIP3 and CMIP5 multi-model ensembles and implications for Central Asian glaciers. Hydrology and Earth System Sciences. 17(9), 3661–3677.","chicago":"Lutz, A. F., W. W. Immerzeel, A. Gobiet, Francesca Pellicciotti, and M. F. P. Bierkens. “Comparison of Climate Change Signals in CMIP3 and CMIP5 Multi-Model Ensembles and Implications for Central Asian Glaciers.” <i>Hydrology and Earth System Sciences</i>. Copernicus GmbH, 2013. <a href=\"https://doi.org/10.5194/hess-17-3661-2013\">https://doi.org/10.5194/hess-17-3661-2013</a>.","ieee":"A. F. Lutz, W. W. Immerzeel, A. Gobiet, F. Pellicciotti, and M. F. P. Bierkens, “Comparison of climate change signals in CMIP3 and CMIP5 multi-model ensembles and implications for Central Asian glaciers,” <i>Hydrology and Earth System Sciences</i>, vol. 17, no. 9. Copernicus GmbH, pp. 3661–3677, 2013.","ama":"Lutz AF, Immerzeel WW, Gobiet A, Pellicciotti F, Bierkens MFP. Comparison of climate change signals in CMIP3 and CMIP5 multi-model ensembles and implications for Central Asian glaciers. <i>Hydrology and Earth System Sciences</i>. 2013;17(9):3661-3677. doi:<a href=\"https://doi.org/10.5194/hess-17-3661-2013\">10.5194/hess-17-3661-2013</a>","short":"A.F. Lutz, W.W. Immerzeel, A. Gobiet, F. Pellicciotti, M.F.P. Bierkens, Hydrology and Earth System Sciences 17 (2013) 3661–3677.","mla":"Lutz, A. F., et al. “Comparison of Climate Change Signals in CMIP3 and CMIP5 Multi-Model Ensembles and Implications for Central Asian Glaciers.” <i>Hydrology and Earth System Sciences</i>, vol. 17, no. 9, Copernicus GmbH, 2013, pp. 3661–77, doi:<a href=\"https://doi.org/10.5194/hess-17-3661-2013\">10.5194/hess-17-3661-2013</a>.","apa":"Lutz, A. F., Immerzeel, W. W., Gobiet, A., Pellicciotti, F., &#38; Bierkens, M. F. P. (2013). Comparison of climate change signals in CMIP3 and CMIP5 multi-model ensembles and implications for Central Asian glaciers. <i>Hydrology and Earth System Sciences</i>. Copernicus GmbH. <a href=\"https://doi.org/10.5194/hess-17-3661-2013\">https://doi.org/10.5194/hess-17-3661-2013</a>"},"publisher":"Copernicus GmbH","language":[{"iso":"eng"}],"author":[{"first_name":"A. F.","last_name":"Lutz","full_name":"Lutz, A. F."},{"first_name":"W. W.","last_name":"Immerzeel","full_name":"Immerzeel, W. W."},{"first_name":"A.","full_name":"Gobiet, A.","last_name":"Gobiet"},{"last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"first_name":"M. F. P.","full_name":"Bierkens, M. F. P.","last_name":"Bierkens"}],"article_processing_charge":"No","_id":"12638","page":"3661-3677","oa_version":"Published Version","publication_status":"published"},{"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1002/wrcr.20450"}],"date_published":"2013-03-01T00:00:00Z","extern":"1","day":"01","abstract":[{"lang":"eng","text":"In the headwater catchments of the main Asian rivers, glaciohydrological models are a useful tool to anticipate impacts of climatic changes. However, the reliability of their projections strongly depends on the quality and quantity of data that are available for parameter estimation, model calibration and validation, as well as on the accuracy of climate change projections. In this study the physically oriented, glaciohydrological model TOPKAPI-ETH is used to simulate future changes in snow, glacier, and runoff from the Hunza River Basin in northern Pakistan. Three key sources of model uncertainty in future runoff projections are compared: model parameters, climate projections, and natural climate variability. A novel approach, applicable also to ungauged catchments, is used to determine which model parameters and model components significantly affect the overall model uncertainty. We show that the model is capable of reproducing streamflow and glacier mass balances, but that all analyzed sources of uncertainty significantly affect the reliability of future projections, and that their effect is variable in time and in space. The effect of parametric uncertainty often exceeds the impact of climate uncertainty and natural climate variability, especially in heavily glacierized subcatchments. The results of the uncertainty analysis allow detailed recommendations on network design and the timing and location of field measurements, which could efficiently help to reduce model uncertainty in the future."}],"issue":"9","status":"public","type":"journal_article","scopus_import":"1","year":"2013","oa":1,"date_updated":"2023-02-24T08:16:19Z","doi":"10.1002/wrcr.20450","month":"03","title":"Sources of uncertainty in modeling the glaciohydrological response of a Karakoram watershed to climate change","publication_identifier":{"issn":["0043-1397"]},"publication":"Water Resources Research","date_created":"2023-02-20T08:17:12Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["Water Science and Technology"],"intvolume":"        49","article_type":"original","publisher":"American Geophysical Union","citation":{"ista":"Ragettli S, Pellicciotti F, Bordoy R, Immerzeel WW. 2013. Sources of uncertainty in modeling the glaciohydrological response of a Karakoram watershed to climate change. Water Resources Research. 49(9), 6048–6066.","ieee":"S. Ragettli, F. Pellicciotti, R. Bordoy, and W. W. Immerzeel, “Sources of uncertainty in modeling the glaciohydrological response of a Karakoram watershed to climate change,” <i>Water Resources Research</i>, vol. 49, no. 9. American Geophysical Union, pp. 6048–6066, 2013.","chicago":"Ragettli, S., Francesca Pellicciotti, R. Bordoy, and W. W. Immerzeel. “Sources of Uncertainty in Modeling the Glaciohydrological Response of a Karakoram Watershed to Climate Change.” <i>Water Resources Research</i>. American Geophysical Union, 2013. <a href=\"https://doi.org/10.1002/wrcr.20450\">https://doi.org/10.1002/wrcr.20450</a>.","short":"S. Ragettli, F. Pellicciotti, R. Bordoy, W.W. Immerzeel, Water Resources Research 49 (2013) 6048–6066.","ama":"Ragettli S, Pellicciotti F, Bordoy R, Immerzeel WW. Sources of uncertainty in modeling the glaciohydrological response of a Karakoram watershed to climate change. <i>Water Resources Research</i>. 2013;49(9):6048-6066. doi:<a href=\"https://doi.org/10.1002/wrcr.20450\">10.1002/wrcr.20450</a>","apa":"Ragettli, S., Pellicciotti, F., Bordoy, R., &#38; Immerzeel, W. W. (2013). Sources of uncertainty in modeling the glaciohydrological response of a Karakoram watershed to climate change. <i>Water Resources Research</i>. American Geophysical Union. <a href=\"https://doi.org/10.1002/wrcr.20450\">https://doi.org/10.1002/wrcr.20450</a>","mla":"Ragettli, S., et al. “Sources of Uncertainty in Modeling the Glaciohydrological Response of a Karakoram Watershed to Climate Change.” <i>Water Resources Research</i>, vol. 49, no. 9, American Geophysical Union, 2013, pp. 6048–66, doi:<a href=\"https://doi.org/10.1002/wrcr.20450\">10.1002/wrcr.20450</a>."},"quality_controlled":"1","volume":49,"page":"6048-6066","article_processing_charge":"No","_id":"12639","author":[{"full_name":"Ragettli, S.","last_name":"Ragettli","first_name":"S."},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti"},{"first_name":"R.","full_name":"Bordoy, R.","last_name":"Bordoy"},{"first_name":"W. W.","full_name":"Immerzeel, W. W.","last_name":"Immerzeel"}],"language":[{"iso":"eng"}],"publication_status":"published","oa_version":"Published Version"},{"date_updated":"2023-02-21T10:46:37Z","doi":"10.1038/ngeo1896","month":"09","title":"Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds","publication_identifier":{"issn":["1752-0894"],"eissn":["1752-0908"]},"publication":"Nature Geoscience","date_created":"2023-02-20T08:17:17Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["General Earth and Planetary Sciences"],"date_published":"2013-09-13T00:00:00Z","day":"13","extern":"1","abstract":[{"text":"Greater Himalayan glaciers are retreating and losing mass at rates comparable to glaciers in other regions of the world1,2,3,4,5. Assessments of future changes and their associated hydrological impacts are scarce, oversimplify glacier dynamics or include a limited number of climate models6,7,8,9. Here, we use results from the latest ensemble of climate models in combination with a high-resolution glacio-hydrological model to assess the hydrological impact of climate change on two climatically contrasting watersheds in the Greater Himalaya, the Baltoro and Langtang watersheds that drain into the Indus and Ganges rivers, respectively. We show that the largest uncertainty in future runoff is a result of variations in projected precipitation between climate models. In both watersheds, strong, but highly variable, increases in future runoff are projected and, despite the different characteristics of the watersheds, their responses are surprisingly similar. In both cases, glaciers will recede but net glacier melt runoff is on a rising limb at least until 2050. In combination with a positive change in precipitation, water availability during this century is not likely to decline. We conclude that river basins that depend on monsoon rains and glacier melt will continue to sustain the increasing water demands expected in these areas10.","lang":"eng"}],"issue":"9","type":"journal_article","status":"public","scopus_import":"1","year":"2013","page":"742-745","_id":"12640","article_processing_charge":"No","author":[{"full_name":"Immerzeel, W. W.","last_name":"Immerzeel","first_name":"W. W."},{"first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti"},{"full_name":"Bierkens, M. F. P.","last_name":"Bierkens","first_name":"M. F. P."}],"language":[{"iso":"eng"}],"publication_status":"published","oa_version":"None","intvolume":"         6","article_type":"letter_note","publisher":"Springer Nature","citation":{"apa":"Immerzeel, W. W., Pellicciotti, F., &#38; Bierkens, M. F. P. (2013). Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds. <i>Nature Geoscience</i>. Springer Nature. <a href=\"https://doi.org/10.1038/ngeo1896\">https://doi.org/10.1038/ngeo1896</a>","mla":"Immerzeel, W. W., et al. “Rising River Flows throughout the Twenty-First Century in Two Himalayan Glacierized Watersheds.” <i>Nature Geoscience</i>, vol. 6, no. 9, Springer Nature, 2013, pp. 742–45, doi:<a href=\"https://doi.org/10.1038/ngeo1896\">10.1038/ngeo1896</a>.","ama":"Immerzeel WW, Pellicciotti F, Bierkens MFP. Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds. <i>Nature Geoscience</i>. 2013;6(9):742-745. doi:<a href=\"https://doi.org/10.1038/ngeo1896\">10.1038/ngeo1896</a>","short":"W.W. Immerzeel, F. Pellicciotti, M.F.P. Bierkens, Nature Geoscience 6 (2013) 742–745.","chicago":"Immerzeel, W. W., Francesca Pellicciotti, and M. F. P. Bierkens. “Rising River Flows throughout the Twenty-First Century in Two Himalayan Glacierized Watersheds.” <i>Nature Geoscience</i>. Springer Nature, 2013. <a href=\"https://doi.org/10.1038/ngeo1896\">https://doi.org/10.1038/ngeo1896</a>.","ieee":"W. W. Immerzeel, F. Pellicciotti, and M. F. P. Bierkens, “Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds,” <i>Nature Geoscience</i>, vol. 6, no. 9. Springer Nature, pp. 742–745, 2013.","ista":"Immerzeel WW, Pellicciotti F, Bierkens MFP. 2013. Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds. Nature Geoscience. 6(9), 742–745."},"quality_controlled":"1","volume":6},{"language":[{"iso":"eng"}],"author":[{"full_name":"Heynen, Martin","last_name":"Heynen","first_name":"Martin"},{"full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"full_name":"Carenzo, Marco","last_name":"Carenzo","first_name":"Marco"}],"_id":"12641","article_processing_charge":"No","page":"311-321","oa_version":"Published Version","publication_status":"published","article_type":"original","intvolume":"        54","volume":54,"quality_controlled":"1","citation":{"apa":"Heynen, M., Pellicciotti, F., &#38; Carenzo, M. (2013). Parameter sensitivity of a distributed enhanced temperature-index melt model. <i>Annals of Glaciology</i>. International Glaciological Society. <a href=\"https://doi.org/10.3189/2013aog63a537\">https://doi.org/10.3189/2013aog63a537</a>","mla":"Heynen, Martin, et al. “Parameter Sensitivity of a Distributed Enhanced Temperature-Index Melt Model.” <i>Annals of Glaciology</i>, vol. 54, no. 63, International Glaciological Society, 2013, pp. 311–21, doi:<a href=\"https://doi.org/10.3189/2013aog63a537\">10.3189/2013aog63a537</a>.","short":"M. Heynen, F. Pellicciotti, M. Carenzo, Annals of Glaciology 54 (2013) 311–321.","ama":"Heynen M, Pellicciotti F, Carenzo M. Parameter sensitivity of a distributed enhanced temperature-index melt model. <i>Annals of Glaciology</i>. 2013;54(63):311-321. doi:<a href=\"https://doi.org/10.3189/2013aog63a537\">10.3189/2013aog63a537</a>","ista":"Heynen M, Pellicciotti F, Carenzo M. 2013. Parameter sensitivity of a distributed enhanced temperature-index melt model. Annals of Glaciology. 54(63), 311–321.","ieee":"M. Heynen, F. Pellicciotti, and M. Carenzo, “Parameter sensitivity of a distributed enhanced temperature-index melt model,” <i>Annals of Glaciology</i>, vol. 54, no. 63. International Glaciological Society, pp. 311–321, 2013.","chicago":"Heynen, Martin, Francesca Pellicciotti, and Marco Carenzo. “Parameter Sensitivity of a Distributed Enhanced Temperature-Index Melt Model.” <i>Annals of Glaciology</i>. International Glaciological Society, 2013. <a href=\"https://doi.org/10.3189/2013aog63a537\">https://doi.org/10.3189/2013aog63a537</a>."},"publisher":"International Glaciological Society","date_created":"2023-02-20T08:17:21Z","publication":"Annals of Glaciology","month":"08","title":"Parameter sensitivity of a distributed enhanced temperature-index melt model","publication_identifier":{"eissn":["1727-5644"],"issn":["0260-3055"]},"doi":"10.3189/2013aog63a537","date_updated":"2023-02-21T10:43:42Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"We investigate the sensitivity of a distributed enhanced temperature-index (ETI) melt model, in order to understand which parameters have the largest influence on model outputs and thus need to be accurately known. We use melt and meteorological data from two Alpine glaciers and one glacier in the Andes of Chile. Sensitivity analysis is conducted in a systematic way in terms of parameters and the different conditions (day, night, clear-sky, overcast), melt seasons and glaciers examined. The sensitivity of total melt to changes in individual parameters is calculated using a local method around the optimal value of the parameters. We verify that the parameters are optimal at the distributed scale and assess the model uncertainty induced by uncertainty in the parameters using a Monte Carlo technique. Model sensitivity to parameters is consistent across melt seasons, glaciers, different conditions and the daily statistics examined. The parameters to which the model is most sensitive are the shortwave-radiation factor, the temperature lapse rate for extrapolation of air temperature, the albedo parameters, the temperature threshold and the cloud transmittance factor parameters. A parameter uncertainty of 5% results in a model uncertainty of 5.6% of mean melt on Haut Glacier d’Arolla, Switzerland."}],"day":"01","extern":"1","date_published":"2013-08-01T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.3189/2013aog63a537","open_access":"1"}],"oa":1,"year":"2013","scopus_import":"1","status":"public","type":"journal_article","issue":"63"},{"keyword":["Earth-Surface Processes"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.3189/2013aog63a477","date_updated":"2023-02-21T10:18:24Z","publication":"Annals of Glaciology","date_created":"2023-02-20T08:17:29Z","title":"Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative","publication_identifier":{"eissn":["1727-5644"],"issn":["0260-3055"]},"month":"08","scopus_import":"1","issue":"63","status":"public","type":"journal_article","oa":1,"year":"2013","main_file_link":[{"url":"https://doi.org/10.3189/2013aog63a477","open_access":"1"}],"date_published":"2013-08-01T00:00:00Z","abstract":[{"lang":"eng","text":"Near-surface air temperature, typically measured at a height of 2 m, is the most important control on the energy exchange and the melt rate at a snow or ice surface. It is distributed in a simplistic manner in most glacier melt models by using constant linear lapse rates, which poorly represent the actual spatial and temporal variability of air temperature. In this paper, we test a simple thermodynamic model proposed by Greuell and Böhm in 1998 as an alternative, using a new dataset of air temperature measurements from along the flowline of Haut Glacier d’Arolla, Switzerland. The unmodified model performs little better than assuming a constant linear lapse rate. When modified to allow the ratio of the boundary layer height to the bulk heat transfer coefficient to vary along the flowline, the model matches measured air temperatures better, and a further reduction of the root-mean-square error is obtained, although there is still considerable scope for improvement. The modified model is shown to perform best under conditions favourable to the development of katabatic winds – few clouds, positive ambient air temperature, limited influence of synoptic or valley winds and a long fetch – but its performance is poor under cloudy conditions."}],"day":"01","extern":"1","publication_status":"published","oa_version":"Published Version","language":[{"iso":"eng"}],"author":[{"last_name":"Petersen","full_name":"Petersen, Lene","first_name":"Lene"},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti"},{"last_name":"Juszak","full_name":"Juszak, Inge","first_name":"Inge"},{"last_name":"Carenzo","full_name":"Carenzo, Marco","first_name":"Marco"},{"last_name":"Brock","full_name":"Brock, Ben","first_name":"Ben"}],"page":"120-130","article_processing_charge":"No","_id":"12642","quality_controlled":"1","publisher":"International Glaciological Society","citation":{"ama":"Petersen L, Pellicciotti F, Juszak I, Carenzo M, Brock B. Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative. <i>Annals of Glaciology</i>. 2013;54(63):120-130. doi:<a href=\"https://doi.org/10.3189/2013aog63a477\">10.3189/2013aog63a477</a>","short":"L. Petersen, F. Pellicciotti, I. Juszak, M. Carenzo, B. Brock, Annals of Glaciology 54 (2013) 120–130.","ieee":"L. Petersen, F. Pellicciotti, I. Juszak, M. Carenzo, and B. Brock, “Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative,” <i>Annals of Glaciology</i>, vol. 54, no. 63. International Glaciological Society, pp. 120–130, 2013.","chicago":"Petersen, Lene, Francesca Pellicciotti, Inge Juszak, Marco Carenzo, and Ben Brock. “Suitability of a Constant Air Temperature Lapse Rate over an Alpine Glacier: Testing the Greuell and Böhm Model as an Alternative.” <i>Annals of Glaciology</i>. International Glaciological Society, 2013. <a href=\"https://doi.org/10.3189/2013aog63a477\">https://doi.org/10.3189/2013aog63a477</a>.","ista":"Petersen L, Pellicciotti F, Juszak I, Carenzo M, Brock B. 2013. Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative. Annals of Glaciology. 54(63), 120–130.","apa":"Petersen, L., Pellicciotti, F., Juszak, I., Carenzo, M., &#38; Brock, B. (2013). Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative. <i>Annals of Glaciology</i>. International Glaciological Society. <a href=\"https://doi.org/10.3189/2013aog63a477\">https://doi.org/10.3189/2013aog63a477</a>","mla":"Petersen, Lene, et al. “Suitability of a Constant Air Temperature Lapse Rate over an Alpine Glacier: Testing the Greuell and Böhm Model as an Alternative.” <i>Annals of Glaciology</i>, vol. 54, no. 63, International Glaciological Society, 2013, pp. 120–30, doi:<a href=\"https://doi.org/10.3189/2013aog63a477\">10.3189/2013aog63a477</a>."},"volume":54,"intvolume":"        54","article_type":"original"},{"oa_version":"Published Version","publication_status":"published","author":[{"first_name":"I.","last_name":"Juszak","full_name":"Juszak, I."},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti"}],"language":[{"iso":"eng"}],"article_processing_charge":"No","_id":"12643","page":"3066-3084","volume":118,"quality_controlled":"1","citation":{"apa":"Juszak, I., &#38; Pellicciotti, F. (2013). A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability. <i>Journal of Geophysical Research: Atmospheres</i>. American Geophysical Union. <a href=\"https://doi.org/10.1002/jgrd.50277\">https://doi.org/10.1002/jgrd.50277</a>","mla":"Juszak, I., and Francesca Pellicciotti. “A Comparison of Parameterizations of Incoming Longwave Radiation over Melting Glaciers: Model Robustness and Seasonal Variability.” <i>Journal of Geophysical Research: Atmospheres</i>, vol. 118, no. 8, American Geophysical Union, 2013, pp. 3066–84, doi:<a href=\"https://doi.org/10.1002/jgrd.50277\">10.1002/jgrd.50277</a>.","ista":"Juszak I, Pellicciotti F. 2013. A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability. Journal of Geophysical Research: Atmospheres. 118(8), 3066–3084.","ieee":"I. Juszak and F. Pellicciotti, “A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability,” <i>Journal of Geophysical Research: Atmospheres</i>, vol. 118, no. 8. American Geophysical Union, pp. 3066–3084, 2013.","chicago":"Juszak, I., and Francesca Pellicciotti. “A Comparison of Parameterizations of Incoming Longwave Radiation over Melting Glaciers: Model Robustness and Seasonal Variability.” <i>Journal of Geophysical Research: Atmospheres</i>. American Geophysical Union, 2013. <a href=\"https://doi.org/10.1002/jgrd.50277\">https://doi.org/10.1002/jgrd.50277</a>.","short":"I. Juszak, F. Pellicciotti, Journal of Geophysical Research: Atmospheres 118 (2013) 3066–3084.","ama":"Juszak I, Pellicciotti F. A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability. <i>Journal of Geophysical Research: Atmospheres</i>. 2013;118(8):3066-3084. doi:<a href=\"https://doi.org/10.1002/jgrd.50277\">10.1002/jgrd.50277</a>"},"publisher":"American Geophysical Union","article_type":"original","intvolume":"       118","keyword":["Space and Planetary Science","Earth and Planetary Sciences (miscellaneous)","Atmospheric Science","Geophysics"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2023-02-20T08:17:34Z","publication":"Journal of Geophysical Research: Atmospheres","month":"04","publication_identifier":{"issn":["2169-897X"]},"title":"A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability","doi":"10.1002/jgrd.50277","date_updated":"2023-02-21T10:10:46Z","oa":1,"year":"2013","scopus_import":"1","status":"public","type":"journal_article","issue":"8","abstract":[{"text":"Parameterizations of incoming longwave radiation are increasingly receiving attention for both low and high elevation glacierized sites. In this paper, we test 13 clear-sky parameterizations combined with seven cloud corrections for all-sky atmospheric emissivity at one location on Haut Glacier d'Arolla. We also analyze the four seasons separately and conduct a cross-validation to test the parameters’ robustness. The best parameterization is the one by Dilley and O'Brien, B for clear-sky conditions combined with Unsworth and Monteith cloud correction. This model is also the most robust when tested in cross-validation. When validated at different sites in the southern Alps of Switzerland and north-western Italian Alps, all parameterizations show a substantial decrease in performance, except for one site, thus suggesting that it is important to recalibrate parameterizations of incoming longwave radiation for different locations. We argue that this is due to differences in the structure of the atmosphere at the sites. We also quantify the effect that the incoming longwave radiation parameterizations have on energy-balance melt modeling, and show that recalibration of model parameters is needed. Using parameters from other sites leads to a significant underestimation of melt and to an error that is larger than that associated with using different parameterizations. Once recalibrated, however, the parameters of most models seem to be stable over seasons and years at the location on Haut Glacier d'Arolla.","lang":"eng"}],"extern":"1","day":"27","date_published":"2013-04-27T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1002/jgrd.50277"}]},{"acknowledgement":"This work was supported by the Max Planck Society. ","publist_id":"5967","publication_status":"published","publication":"Journal of Neuroscience","date_created":"2018-12-11T11:51:16Z","title":"Optogenetic control of fly optomotor responses","month":"01","author":[{"full_name":"Haikala, Väinö","last_name":"Haikala","first_name":"Väinö"},{"full_name":"Maximilian Jösch","orcid":"0000-0002-3937-1330","last_name":"Jösch","first_name":"Maximilian A","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Borst, Alexander","last_name":"Borst","first_name":"Alexander"},{"full_name":"Mauss, Alex S","last_name":"Mauss","first_name":"Alex"}],"doi":"10.1523/JNEUROSCI.0340-13.2013","page":"13927 - 13934","date_updated":"2021-01-12T06:49:45Z","_id":"1304","volume":33,"year":"2013","quality_controlled":0,"publisher":"Society for Neuroscience","issue":"34","status":"public","type":"journal_article","citation":{"mla":"Haikala, Väinö, et al. “Optogenetic Control of Fly Optomotor Responses.” <i>Journal of Neuroscience</i>, vol. 33, no. 34, Society for Neuroscience, 2013, pp. 13927–34, doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.0340-13.2013\">10.1523/JNEUROSCI.0340-13.2013</a>.","apa":"Haikala, V., Jösch, M. A., Borst, A., &#38; Mauss, A. (2013). Optogenetic control of fly optomotor responses. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href=\"https://doi.org/10.1523/JNEUROSCI.0340-13.2013\">https://doi.org/10.1523/JNEUROSCI.0340-13.2013</a>","short":"V. Haikala, M.A. Jösch, A. Borst, A. Mauss, Journal of Neuroscience 33 (2013) 13927–13934.","ama":"Haikala V, Jösch MA, Borst A, Mauss A. Optogenetic control of fly optomotor responses. <i>Journal of Neuroscience</i>. 2013;33(34):13927-13934. doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.0340-13.2013\">10.1523/JNEUROSCI.0340-13.2013</a>","ista":"Haikala V, Jösch MA, Borst A, Mauss A. 2013. Optogenetic control of fly optomotor responses. Journal of Neuroscience. 33(34), 13927–13934.","ieee":"V. Haikala, M. A. Jösch, A. Borst, and A. Mauss, “Optogenetic control of fly optomotor responses,” <i>Journal of Neuroscience</i>, vol. 33, no. 34. Society for Neuroscience, pp. 13927–13934, 2013.","chicago":"Haikala, Väinö, Maximilian A Jösch, Alexander Borst, and Alex Mauss. “Optogenetic Control of Fly Optomotor Responses.” <i>Journal of Neuroscience</i>. Society for Neuroscience, 2013. <a href=\"https://doi.org/10.1523/JNEUROSCI.0340-13.2013\">https://doi.org/10.1523/JNEUROSCI.0340-13.2013</a>."},"abstract":[{"text":"When confronted with a large-field stimulus rotating around the vertical body axis, flies display a following behavior called &quot;optomotor response.&quot; As neural control elements, the large tangential horizontal system (HS) cells of the lobula plate have been prime candidates for long. Here, we applied optogenetic stimulation of HS cells to evaluate their behavioral role in Drosophila. To minimize interference of the optical activation of channelrhodopsin-2 with the visual perception of the flies, we used a bistable variant called ChR2-C128S. By applying pulses of blue and yellow light, we first demonstrate electrophysiologically that lobula plate tangential cells can be activated and deactivated repeatedly with no evident change in depolarization strength over trials. We next show that selective optogenetic activation of HS cells elicits robust yaw head movements and yaw turning responses in fixed and tethered flying flies, respectively.","lang":"eng"}],"day":"01","extern":1,"intvolume":"        33","date_published":"2013-01-01T00:00:00Z"},{"intvolume":"        33","date_published":"2013-01-16T00:00:00Z","day":"16","extern":1,"abstract":[{"text":"In the fly Drosophila melanogaster, photoreceptor input to motion vision is split into two parallel pathways as represented by first-order interneurons L1 and L2 (Rister et al., 2007; Joesch et al., 2010). However, how these pathways are functionally specialized remains controversial. One study (Eichner et al., 2011) proposed that the L1-pathway evaluates only sequences of brightness increments (ON-ON), while the L2-pathway processes exclusively brightness decrements (OFF-OFF). Another study (Clark et al., 2011) proposed that each of the two pathways evaluates both ON-ON and OFF-OFF sequences. To decide between these alternatives, we recorded from motionsensitive neurons in flies in which the output from either L1 or L2 was genetically blocked. We found that blocking L1 abolishes ON-ON responses but leaves OFF-OFF responses intact. The opposite was true, when the output from L2 was blocked. We conclude that the L1 and L2 pathways are functionally specialized to detect ON-ON and OFF-OFF sequences, respectively.","lang":"eng"}],"issue":"3","publisher":"Society for Neuroscience","citation":{"short":"M.A. Jösch, F. Weber, H. Eichner, A. Borst, Journal of Neuroscience 33 (2013) 902–905.","ama":"Jösch MA, Weber F, Eichner H, Borst A. Functional specialization of parallel motion detection circuits in the fly. <i>Journal of Neuroscience</i>. 2013;33(3):902-905. doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.3374-12.2013\">10.1523/JNEUROSCI.3374-12.2013</a>","chicago":"Jösch, Maximilian A, Franz Weber, Hubert Eichner, and Alexander Borst. “Functional Specialization of Parallel Motion Detection Circuits in the Fly.” <i>Journal of Neuroscience</i>. Society for Neuroscience, 2013. <a href=\"https://doi.org/10.1523/JNEUROSCI.3374-12.2013\">https://doi.org/10.1523/JNEUROSCI.3374-12.2013</a>.","ieee":"M. A. Jösch, F. Weber, H. Eichner, and A. Borst, “Functional specialization of parallel motion detection circuits in the fly,” <i>Journal of Neuroscience</i>, vol. 33, no. 3. Society for Neuroscience, pp. 902–905, 2013.","ista":"Jösch MA, Weber F, Eichner H, Borst A. 2013. Functional specialization of parallel motion detection circuits in the fly. Journal of Neuroscience. 33(3), 902–905.","apa":"Jösch, M. A., Weber, F., Eichner, H., &#38; Borst, A. (2013). Functional specialization of parallel motion detection circuits in the fly. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href=\"https://doi.org/10.1523/JNEUROSCI.3374-12.2013\">https://doi.org/10.1523/JNEUROSCI.3374-12.2013</a>","mla":"Jösch, Maximilian A., et al. “Functional Specialization of Parallel Motion Detection Circuits in the Fly.” <i>Journal of Neuroscience</i>, vol. 33, no. 3, Society for Neuroscience, 2013, pp. 902–05, doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.3374-12.2013\">10.1523/JNEUROSCI.3374-12.2013</a>."},"status":"public","type":"journal_article","quality_controlled":0,"year":"2013","volume":33,"date_updated":"2021-01-12T06:49:45Z","page":"902 - 905","_id":"1305","author":[{"full_name":"Maximilian Jösch","orcid":"0000-0002-3937-1330","last_name":"Jösch","first_name":"Maximilian A","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Franz","last_name":"Weber","full_name":"Weber, Franz"},{"full_name":"Eichner, Hubert","last_name":"Eichner","first_name":"Hubert"},{"first_name":"Alexander","full_name":"Borst, Alexander","last_name":"Borst"}],"doi":"10.1523/JNEUROSCI.3374-12.2013","month":"01","title":"Functional specialization of parallel motion detection circuits in the fly","publication":"Journal of Neuroscience","date_created":"2018-12-11T11:51:16Z","publication_status":"published","publist_id":"5968","acknowledgement":"This work was supported by the Max-Planck-Society and the SFB 870 of the Deutsche Forschungsgemeinschaft."},{"publication_status":"published","publist_id":"5962","author":[{"full_name":"Julian Fischer","last_name":"Fischer","orcid":"0000-0002-0479-558X","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","first_name":"Julian L"}],"doi":"10.1080/03605302.2013.823548","date_updated":"2021-01-12T06:49:46Z","page":"2004 - 2047","_id":"1307","publication":"Communications in Partial Differential Equations","date_created":"2018-12-11T11:51:17Z","title":"Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models","month":"11","quality_controlled":0,"issue":"11","publisher":"Taylor & Francis","citation":{"mla":"Fischer, Julian L. “Uniqueness of Solutions of the Derrida-Lebowitz-Speer-Spohn Equation and Quantum Drift Diffusion Models.” <i>Communications in Partial Differential Equations</i>, vol. 38, no. 11, Taylor &#38; Francis, 2013, pp. 2004–47, doi:<a href=\"https://doi.org/10.1080/03605302.2013.823548\">10.1080/03605302.2013.823548</a>.","apa":"Fischer, J. L. (2013). Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. <i>Communications in Partial Differential Equations</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/03605302.2013.823548\">https://doi.org/10.1080/03605302.2013.823548</a>","ama":"Fischer JL. Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. <i>Communications in Partial Differential Equations</i>. 2013;38(11):2004-2047. doi:<a href=\"https://doi.org/10.1080/03605302.2013.823548\">10.1080/03605302.2013.823548</a>","short":"J.L. Fischer, Communications in Partial Differential Equations 38 (2013) 2004–2047.","chicago":"Fischer, Julian L. “Uniqueness of Solutions of the Derrida-Lebowitz-Speer-Spohn Equation and Quantum Drift Diffusion Models.” <i>Communications in Partial Differential Equations</i>. Taylor &#38; Francis, 2013. <a href=\"https://doi.org/10.1080/03605302.2013.823548\">https://doi.org/10.1080/03605302.2013.823548</a>.","ieee":"J. L. Fischer, “Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models,” <i>Communications in Partial Differential Equations</i>, vol. 38, no. 11. Taylor &#38; Francis, pp. 2004–2047, 2013.","ista":"Fischer JL. 2013. Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. Communications in Partial Differential Equations. 38(11), 2004–2047."},"status":"public","type":"journal_article","volume":38,"year":"2013","intvolume":"        38","date_published":"2013-11-01T00:00:00Z","abstract":[{"lang":"eng","text":"We prove uniqueness of solutions of the DLSS equation in a class of sufficiently regular functions. The global weak solutions of the DLSS equation constructed by Jüngel and Matthes belong to this class of uniqueness. We also show uniqueness of solutions for the quantum drift-diffusion equation, which contains additional drift and second-order diffusion terms. The results hold in case of periodic or Dirichlet-Neumann boundary conditions. Our proof is based on a monotonicity property of the DLSS operator and sophisticated approximation arguments; we derive a PDE satisfied by the pointwise square root of the solution, which enables us to exploit the monotonicity property of the operator."}],"extern":1,"day":"01"},{"type":"journal_article","citation":{"apa":"Fischer, J. L. (2013). Advection-driven support shrinking in a chemotaxis model with degenerate mobility. <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial and Applied Mathematics . <a href=\"https://doi.org/10.1137/120874291\">https://doi.org/10.1137/120874291</a>","mla":"Fischer, Julian L. “Advection-Driven Support Shrinking in a Chemotaxis Model with Degenerate Mobility.” <i>SIAM Journal on Mathematical Analysis</i>, vol. 45, no. 3, Society for Industrial and Applied Mathematics , 2013, pp. 1585–615, doi:<a href=\"https://doi.org/10.1137/120874291\">10.1137/120874291</a>.","ama":"Fischer JL. Advection-driven support shrinking in a chemotaxis model with degenerate mobility. <i>SIAM Journal on Mathematical Analysis</i>. 2013;45(3):1585-1615. doi:<a href=\"https://doi.org/10.1137/120874291\">10.1137/120874291</a>","short":"J.L. Fischer, SIAM Journal on Mathematical Analysis 45 (2013) 1585–1615.","ieee":"J. L. Fischer, “Advection-driven support shrinking in a chemotaxis model with degenerate mobility,” <i>SIAM Journal on Mathematical Analysis</i>, vol. 45, no. 3. Society for Industrial and Applied Mathematics , pp. 1585–1615, 2013.","chicago":"Fischer, Julian L. “Advection-Driven Support Shrinking in a Chemotaxis Model with Degenerate Mobility.” <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial and Applied Mathematics , 2013. <a href=\"https://doi.org/10.1137/120874291\">https://doi.org/10.1137/120874291</a>.","ista":"Fischer JL. 2013. Advection-driven support shrinking in a chemotaxis model with degenerate mobility. SIAM Journal on Mathematical Analysis. 45(3), 1585–1615."},"status":"public","publisher":"Society for Industrial and Applied Mathematics ","issue":"3","quality_controlled":0,"year":"2013","volume":45,"date_published":"2013-01-01T00:00:00Z","intvolume":"        45","extern":1,"day":"01","abstract":[{"lang":"eng","text":"We derive sufficient conditions for advection-driven backward motion of the free boundary in a chemotaxis model with degenerate mobility. In this model, a porous-medium-type diffusive term and an advection term are in competition. The former induces forward motion, the latter may induce backward motion of the free boundary depending on the direction of advection. We deduce conditions on the growth of the initial data at the free boundary which ensure that at least initially the advection term is dominant. This implies local backward motion of the free boundary provided the advection is (locally) directed appropriately. Our result is based on a new class of moving test functions and Stampacchia's lemma. As a by-product of our estimates, we obtain quantitative bounds on the spreading of the support of solutions for the chemotaxis model and provide a proof for the finite speed of the support propagation property of solutions."}],"publication_status":"published","publist_id":"5963","_id":"1308","date_updated":"2021-01-12T06:49:46Z","page":"1585 - 1615","doi":"10.1137/120874291","author":[{"first_name":"Julian L","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","full_name":"Julian Fischer","orcid":"0000-0002-0479-558X","last_name":"Fischer"}],"title":"Advection-driven support shrinking in a chemotaxis model with degenerate mobility","month":"01","date_created":"2018-12-11T11:51:17Z","publication":"SIAM Journal on Mathematical Analysis"},{"publication_status":"published","publist_id":"5961","doi":"10.1016/j.jde.2013.07.028","author":[{"last_name":"Fischer","orcid":"0000-0002-0479-558X","full_name":"Julian Fischer","first_name":"Julian L","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87"}],"_id":"1310","date_updated":"2021-01-12T06:49:47Z","page":"3127 - 3149","date_created":"2018-12-11T11:51:18Z","publication":"Journal of Differential Equations","title":"Optimal lower bounds on asymptotic support propagation rates for the thin-film equation","month":"11","quality_controlled":0,"status":"public","citation":{"short":"J.L. Fischer, Journal of Differential Equations 255 (2013) 3127–3149.","ama":"Fischer JL. Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. <i>Journal of Differential Equations</i>. 2013;255(10):3127-3149. doi:<a href=\"https://doi.org/10.1016/j.jde.2013.07.028\">10.1016/j.jde.2013.07.028</a>","ista":"Fischer JL. 2013. Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. Journal of Differential Equations. 255(10), 3127–3149.","chicago":"Fischer, Julian L. “Optimal Lower Bounds on Asymptotic Support Propagation Rates for the Thin-Film Equation.” <i>Journal of Differential Equations</i>. Academic Press, 2013. <a href=\"https://doi.org/10.1016/j.jde.2013.07.028\">https://doi.org/10.1016/j.jde.2013.07.028</a>.","ieee":"J. L. Fischer, “Optimal lower bounds on asymptotic support propagation rates for the thin-film equation,” <i>Journal of Differential Equations</i>, vol. 255, no. 10. Academic Press, pp. 3127–3149, 2013.","mla":"Fischer, Julian L. “Optimal Lower Bounds on Asymptotic Support Propagation Rates for the Thin-Film Equation.” <i>Journal of Differential Equations</i>, vol. 255, no. 10, Academic Press, 2013, pp. 3127–49, doi:<a href=\"https://doi.org/10.1016/j.jde.2013.07.028\">10.1016/j.jde.2013.07.028</a>.","apa":"Fischer, J. L. (2013). Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. <i>Journal of Differential Equations</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.jde.2013.07.028\">https://doi.org/10.1016/j.jde.2013.07.028</a>"},"type":"journal_article","publisher":"Academic Press","issue":"10","volume":255,"year":"2013","date_published":"2013-11-15T00:00:00Z","intvolume":"       255","abstract":[{"text":"We derive lower bounds on asymptotic support propagation rates for strong solutions of the Cauchy problem for the thin-film equation. The bounds coincide up to a constant factor with the previously known upper bounds and thus are sharp. Our results hold in case of at most three spatial dimensions and n∈. (1, 2.92). The result is established using weighted backward entropy inequalities with singular weight functions to yield a differential inequality; combined with some entropy production estimates, the optimal rate of propagation is obtained. To the best of our knowledge, these are the first lower bounds on asymptotic support propagation rates for higher-order nonnegativity-preserving parabolic equations.","lang":"eng"}],"extern":1,"day":"15"},{"volume":494,"year":"2013","quality_controlled":0,"issue":"7438","publisher":"Nature Publishing Group","status":"public","type":"journal_article","citation":{"apa":"Baradaran, R., Berrisford, J., Minhas, G., &#38; Sazanov, L. A. (2013). Crystal structure of the entire respiratory complex i. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature11871\">https://doi.org/10.1038/nature11871</a>","mla":"Baradaran, Rozbeh, et al. “Crystal Structure of the Entire Respiratory Complex I.” <i>Nature</i>, vol. 494, no. 7438, Nature Publishing Group, 2013, pp. 443–48, doi:<a href=\"https://doi.org/10.1038/nature11871\">10.1038/nature11871</a>.","ieee":"R. Baradaran, J. Berrisford, G. Minhas, and L. A. Sazanov, “Crystal structure of the entire respiratory complex i,” <i>Nature</i>, vol. 494, no. 7438. Nature Publishing Group, pp. 443–448, 2013.","chicago":"Baradaran, Rozbeh, John Berrisford, Gurdeep Minhas, and Leonid A Sazanov. “Crystal Structure of the Entire Respiratory Complex I.” <i>Nature</i>. Nature Publishing Group, 2013. <a href=\"https://doi.org/10.1038/nature11871\">https://doi.org/10.1038/nature11871</a>.","ista":"Baradaran R, Berrisford J, Minhas G, Sazanov LA. 2013. Crystal structure of the entire respiratory complex i. Nature. 494(7438), 443–448.","short":"R. Baradaran, J. Berrisford, G. Minhas, L.A. Sazanov, Nature 494 (2013) 443–448.","ama":"Baradaran R, Berrisford J, Minhas G, Sazanov LA. Crystal structure of the entire respiratory complex i. <i>Nature</i>. 2013;494(7438):443-448. doi:<a href=\"https://doi.org/10.1038/nature11871\">10.1038/nature11871</a>"},"abstract":[{"lang":"eng","text":"Complex I is the first and largest enzyme of the respiratory chain and has a central role in cellular energy production through the coupling of NADH:ubiquinone electron transfer to proton translocation. It is also implicated in many common human neurodegenerative diseases. Here, we report the first crystal structure of the entire, intact complex I (from Thermus thermophilus) at 3.3 Å resolution. The structure of the 536-kDa complex comprises 16 different subunits, with a total of 64 transmembrane helices and 9 iron-sulphur clusters. The core fold of subunit Nqo8 (ND1 in humans) is, unexpectedly, similar to a half-channel of the antiporter-like subunits. Small subunits nearby form a linked second half-channel, which completes the fourth proton-translocation pathway (present in addition to the channels in three antiporter-like subunits). The quinone-binding site is unusually long, narrow and enclosed. The quinone headgroup binds at the deep end of this chamber, near iron-sulphur cluster N2. Notably, the chamber is linked to the fourth channel by a 'funnel' of charged residues. The link continues over the entire membrane domain as a flexible central axis of charged and polar residues, and probably has a leading role in the propagation of conformational changes, aided by coupling elements. The structure suggests that a unique, out-of-the-membrane quinone-reaction chamber enables the redox energy to drive concerted long-range conformational changes in the four antiporter-like domains, resulting in translocation of four protons per cycle."}],"extern":1,"day":"28","intvolume":"       494","date_published":"2013-02-28T00:00:00Z","acknowledgement":"This work was funded by the Medical Research Council.","publist_id":"5107","publication_status":"published","publication":"Nature","date_created":"2018-12-11T11:55:01Z","title":"Crystal structure of the entire respiratory complex i","month":"02","author":[{"last_name":"Baradaran","full_name":"Baradaran, Rozbeh ","first_name":"Rozbeh"},{"last_name":"Berrisford","full_name":"Berrisford, John M","first_name":"John"},{"first_name":"Gurdeep","full_name":"Minhas, Gurdeep S","last_name":"Minhas"},{"first_name":"Leonid A","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","full_name":"Leonid Sazanov","last_name":"Sazanov","orcid":"0000-0002-0977-7989"}],"doi":"10.1038/nature11871","date_updated":"2021-01-12T06:54:28Z","page":"443 - 448","_id":"1978"},{"publication_status":"published","publist_id":"5095","doi":"10.1371/journal.pcbi.1003347","author":[{"last_name":"Bonny","full_name":"Bonny, Mike ","first_name":"Mike"},{"last_name":"Fischer Friedrich","full_name":"Fischer-Friedrich, Elisabeth","first_name":"Elisabeth"},{"id":"462D4284-F248-11E8-B48F-1D18A9856A87","first_name":"Martin","full_name":"Martin Loose","orcid":"0000-0001-7309-9724","last_name":"Loose"},{"first_name":"Petra","last_name":"Schwille","full_name":"Schwille, Petra "},{"first_name":"Karsten","full_name":"Kruse, Karsten","last_name":"Kruse"}],"_id":"1988","date_updated":"2021-01-12T06:54:32Z","date_created":"2018-12-11T11:55:04Z","publication":"PLoS Computational Biology","title":"Membrane binding of MinE allows for a comprehensive description of Min-protein pattern formation","month":"12","quality_controlled":0,"status":"public","citation":{"chicago":"Bonny, Mike, Elisabeth Fischer Friedrich, Martin Loose, Petra Schwille, and Karsten Kruse. “Membrane Binding of MinE Allows for a Comprehensive Description of Min-Protein Pattern Formation.” <i>PLoS Computational Biology</i>. Public Library of Science, 2013. <a href=\"https://doi.org/10.1371/journal.pcbi.1003347\">https://doi.org/10.1371/journal.pcbi.1003347</a>.","ieee":"M. Bonny, E. Fischer Friedrich, M. Loose, P. Schwille, and K. Kruse, “Membrane binding of MinE allows for a comprehensive description of Min-protein pattern formation,” <i>PLoS Computational Biology</i>, vol. 9, no. 12. Public Library of Science, 2013.","ista":"Bonny M, Fischer Friedrich E, Loose M, Schwille P, Kruse K. 2013. Membrane binding of MinE allows for a comprehensive description of Min-protein pattern formation. PLoS Computational Biology. 9(12).","ama":"Bonny M, Fischer Friedrich E, Loose M, Schwille P, Kruse K. Membrane binding of MinE allows for a comprehensive description of Min-protein pattern formation. <i>PLoS Computational Biology</i>. 2013;9(12). doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1003347\">10.1371/journal.pcbi.1003347</a>","short":"M. Bonny, E. Fischer Friedrich, M. Loose, P. Schwille, K. Kruse, PLoS Computational Biology 9 (2013).","mla":"Bonny, Mike, et al. “Membrane Binding of MinE Allows for a Comprehensive Description of Min-Protein Pattern Formation.” <i>PLoS Computational Biology</i>, vol. 9, no. 12, Public Library of Science, 2013, doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1003347\">10.1371/journal.pcbi.1003347</a>.","apa":"Bonny, M., Fischer Friedrich, E., Loose, M., Schwille, P., &#38; Kruse, K. (2013). Membrane binding of MinE allows for a comprehensive description of Min-protein pattern formation. <i>PLoS Computational Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pcbi.1003347\">https://doi.org/10.1371/journal.pcbi.1003347</a>"},"type":"journal_article","publisher":"Public Library of Science","issue":"12","volume":9,"year":"2013","date_published":"2013-12-01T00:00:00Z","intvolume":"         9","abstract":[{"text":"The rod-shaped bacterium Escherichia coli selects the cell center as site of division with the help of the proteins MinC, MinD, and MinE. This protein system collectively oscillates between the two cell poles by alternately binding to the membrane in one of the two cell halves. This dynamic behavior, which emerges from the interaction of the ATPase MinD and its activator MinE on the cell membrane, has become a paradigm for protein self-organization. Recently, it has been found that not only the binding of MinD to the membrane, but also interactions of MinE with the membrane contribute to Min-protein self-organization. Here, we show that by accounting for this finding in a computational model, we can comprehensively describe all observed Min-protein patterns in vivo and in vitro. Furthermore, by varying the system's geometry, our computations predict patterns that have not yet been reported. We confirm these predictions experimentally.","lang":"eng"}],"extern":1,"day":"01"},{"abstract":[{"lang":"eng","text":"Although transitions of sex-determination mechanisms are frequent in species with homomorphic sex chromosomes, heteromorphic sex chromosomes are thought to represent a terminal evolutionary stage owing to chromosome-specific adaptations such as dosage compensation or an accumulation of sex-specific mutations. Here we show that an autosome of Drosophila, the dot chromosome, was ancestrally a differentiated X chromosome. We analyse the whole genome of true fruitflies (Tephritidae), flesh flies (Sarcophagidae) and soldier flies (Stratiomyidae) to show that genes located on the dot chromosome of Drosophila are X-linked in outgroup species, whereas Drosophila X-linked genes are autosomal. We date this chromosomal transition to early drosophilid evolution by sequencing the genome of other Drosophilidae. Our results reveal several puzzling aspects of Drosophila dot chromosome biology to be possible remnants of its former life as a sex chromosome, such as its minor feminizing role in sex determination or its targeting by a chromosome-specific regulatory mechanism. We also show that patterns of biased gene expression of the dot chromosome during early embryogenesis, oogenesis and spermatogenesis resemble that of the current X chromosome. Thus, although sex chromosomes are not necessarily evolutionary end points and can revert back to an autosomal inheritance, the highly specialized genome architecture of this former X chromosome suggests that severe fitness costs must be overcome for such a turnover to occur."}],"extern":1,"day":"18","date_published":"2013-07-18T00:00:00Z","intvolume":"       499","volume":499,"year":"2013","quality_controlled":0,"citation":{"ieee":"B. Vicoso and D. Bachtrog, “Reversal of an ancient sex chromosome to an autosome in Drosophila,” <i>Nature</i>, vol. 499, no. 7458. Nature Publishing Group, pp. 332–335, 2013.","chicago":"Vicoso, Beatriz, and Doris Bachtrog. “Reversal of an Ancient Sex Chromosome to an Autosome in Drosophila.” <i>Nature</i>. Nature Publishing Group, 2013. <a href=\"https://doi.org/10.1038/nature12235\">https://doi.org/10.1038/nature12235</a>.","ista":"Vicoso B, Bachtrog D. 2013. Reversal of an ancient sex chromosome to an autosome in Drosophila. Nature. 499(7458), 332–335.","ama":"Vicoso B, Bachtrog D. Reversal of an ancient sex chromosome to an autosome in Drosophila. <i>Nature</i>. 2013;499(7458):332-335. doi:<a href=\"https://doi.org/10.1038/nature12235\">10.1038/nature12235</a>","short":"B. Vicoso, D. Bachtrog, Nature 499 (2013) 332–335.","mla":"Vicoso, Beatriz, and Doris Bachtrog. “Reversal of an Ancient Sex Chromosome to an Autosome in Drosophila.” <i>Nature</i>, vol. 499, no. 7458, Nature Publishing Group, 2013, pp. 332–35, doi:<a href=\"https://doi.org/10.1038/nature12235\">10.1038/nature12235</a>.","apa":"Vicoso, B., &#38; Bachtrog, D. (2013). Reversal of an ancient sex chromosome to an autosome in Drosophila. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature12235\">https://doi.org/10.1038/nature12235</a>"},"status":"public","type":"journal_article","publisher":"Nature Publishing Group","issue":"7458","date_created":"2018-12-11T11:55:05Z","publication":"Nature","title":"Reversal of an ancient sex chromosome to an autosome in Drosophila","month":"07","doi":"10.1038/nature12235","author":[{"orcid":"0000-0002-4579-8306","last_name":"Vicoso","full_name":"Beatriz Vicoso","first_name":"Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Bachtrog, Doris","last_name":"Bachtrog","first_name":"Doris"}],"_id":"1991","date_updated":"2021-01-12T06:54:33Z","page":"332 - 335","acknowledgement":"Funded by National Institutes of Health grants (R01GM076007 and R01GM093182) and a Packard Fellowship to D.B.","publist_id":"5092","publication_status":"published"},{"abstract":[{"text":"Markov decision processes (MDPs) and simple stochastic games (SSGs) provide a rich mathematical framework to study many important problems related to probabilistic systems. MDPs and SSGs with finite-horizon objectives, where the goal is to maximize the probability to reach a target state in a given finite time, is a classical and well-studied problem. In this work we consider the strategy complexity of finite-horizon MDPs and SSGs. We show that for all ε > 0, the natural class of counter-based strategies require at most log log/(1/ε) + n + 1 memory states, and memory of size Omega(log log(1/ε) + n) is required, for ε-optimality, where n is the number of states of the MDP (resp. SSG). Thus our bounds are asymptotically optimal. We then study the periodic property of optimal strategies, and show a sub-exponential lower bound on the period for optimal strategies.","lang":"eng"}],"day":"17","date_published":"2013-01-17T00:00:00Z","project":[{"grant_number":"P 23499-N23","name":"Modern Graph Algorithmic Techniques in Formal Verification","_id":"2584A770-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"_id":"25863FF4-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"S11407","name":"Game Theory"},{"call_identifier":"FP7","_id":"2581B60A-B435-11E9-9278-68D0E5697425","name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1209.3617"}],"oa":1,"arxiv":1,"year":"2013","scopus_import":"1","OA_type":"green","type":"conference","status":"public","date_created":"2025-07-10T14:08:49Z","publication":"Mathematical and Engineering Methods in Computer Science","title":"Strategy complexity of finite-horizon Markov decision processes and simple stochastic games","month":"01","publication_identifier":{"isbn":["9783642360442"],"issn":["0302-9743"],"eissn":["1611-3349"],"eisbn":["9783642360466"]},"doi":"10.1007/978-3-642-36046-6_11","date_updated":"2025-09-23T09:24:13Z","conference":{"start_date":"2012-10-25","name":"MEMICS: Mathematical and Engineering Methods in Computer Science","end_date":"2012-10-28","location":"Znojmo, Czech Republic"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"      7721","ec_funded":1,"volume":7721,"alternative_title":["LNCS"],"quality_controlled":"1","corr_author":"1","citation":{"apa":"Chatterjee, K., &#38; Ibsen-Jensen, R. (2013). Strategy complexity of finite-horizon Markov decision processes and simple stochastic games. In <i>Mathematical and Engineering Methods in Computer Science</i> (Vol. 7721, pp. 106–117). Znojmo, Czech Republic: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-642-36046-6_11\">https://doi.org/10.1007/978-3-642-36046-6_11</a>","mla":"Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. “Strategy Complexity of Finite-Horizon Markov Decision Processes and Simple Stochastic Games.” <i>Mathematical and Engineering Methods in Computer Science</i>, vol. 7721, Springer Nature, 2013, pp. 106–17, doi:<a href=\"https://doi.org/10.1007/978-3-642-36046-6_11\">10.1007/978-3-642-36046-6_11</a>.","short":"K. Chatterjee, R. Ibsen-Jensen, in:, Mathematical and Engineering Methods in Computer Science, Springer Nature, 2013, pp. 106–117.","ama":"Chatterjee K, Ibsen-Jensen R. Strategy complexity of finite-horizon Markov decision processes and simple stochastic games. In: <i>Mathematical and Engineering Methods in Computer Science</i>. Vol 7721. Springer Nature; 2013:106-117. doi:<a href=\"https://doi.org/10.1007/978-3-642-36046-6_11\">10.1007/978-3-642-36046-6_11</a>","ista":"Chatterjee K, Ibsen-Jensen R. 2013. Strategy complexity of finite-horizon Markov decision processes and simple stochastic games. Mathematical and Engineering Methods in Computer Science. MEMICS: Mathematical and Engineering Methods in Computer Science, LNCS, vol. 7721, 106–117.","ieee":"K. Chatterjee and R. Ibsen-Jensen, “Strategy complexity of finite-horizon Markov decision processes and simple stochastic games,” in <i>Mathematical and Engineering Methods in Computer Science</i>, Znojmo, Czech Republic, 2013, vol. 7721, pp. 106–117.","chicago":"Chatterjee, Krishnendu, and Rasmus Ibsen-Jensen. “Strategy Complexity of Finite-Horizon Markov Decision Processes and Simple Stochastic Games.” In <i>Mathematical and Engineering Methods in Computer Science</i>, 7721:106–17. Springer Nature, 2013. <a href=\"https://doi.org/10.1007/978-3-642-36046-6_11\">https://doi.org/10.1007/978-3-642-36046-6_11</a>."},"publisher":"Springer Nature","language":[{"iso":"eng"}],"author":[{"full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Ibsen-Jensen, Rasmus","last_name":"Ibsen-Jensen","orcid":"0000-0003-4783-0389","id":"3B699956-F248-11E8-B48F-1D18A9856A87","first_name":"Rasmus"}],"department":[{"_id":"KrCh"}],"_id":"19995","OA_place":"repository","article_processing_charge":"No","page":"106-117","oa_version":"Preprint","acknowledgement":"Work of the second author supported by the Sino-Danish Center for the Theory of Interactive Computation, funded by the Danish National Research Foundation and the National Science Foundation of China (under the grant 61061130540). The second author acknowledge support from the Center for research in the Foundations of Electronic Markets (CFEM), supported by the Danish Strategic Research Council. The first author was supported by FWF Grant No P 23499-N23, FWF NFN Grant No S11407-N23 (RiSE), ERC Start grant (279307: Graph Games), and Microsoft faculty fellows award.","external_id":{"arxiv":["1209.3617"]},"publication_status":"published"}]