[{"language":[{"iso":"eng"}],"doi":"10.1021/acs.nanolett.5b00990","intvolume":"        15","external_id":{"arxiv":["1410.1439"]},"issue":"7","date_created":"2024-09-09T09:44:13Z","quality_controlled":"1","volume":15,"_id":"17969","page":"4498-4503","publication":"Nano Letters","citation":{"ista":"Kotiuga M, Darancet P, Arroyo CR, Venkataraman L, Neaton JB. 2015. Adsorption-induced solvent-based electrostatic gating of charge transport through molecular junctions. Nano Letters. 15(7), 4498–4503.","short":"M. Kotiuga, P. Darancet, C.R. Arroyo, L. Venkataraman, J.B. Neaton, Nano Letters 15 (2015) 4498–4503.","ieee":"M. Kotiuga, P. Darancet, C. R. Arroyo, L. Venkataraman, and J. B. Neaton, “Adsorption-induced solvent-based electrostatic gating of charge transport through molecular junctions,” <i>Nano Letters</i>, vol. 15, no. 7. American Chemical Society, pp. 4498–4503, 2015.","mla":"Kotiuga, Michele, et al. “Adsorption-Induced Solvent-Based Electrostatic Gating of Charge Transport through Molecular Junctions.” <i>Nano Letters</i>, vol. 15, no. 7, American Chemical Society, 2015, pp. 4498–503, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.5b00990\">10.1021/acs.nanolett.5b00990</a>.","chicago":"Kotiuga, Michele, Pierre Darancet, Carlos R. Arroyo, Latha Venkataraman, and Jeffrey B. Neaton. “Adsorption-Induced Solvent-Based Electrostatic Gating of Charge Transport through Molecular Junctions.” <i>Nano Letters</i>. American Chemical Society, 2015. <a href=\"https://doi.org/10.1021/acs.nanolett.5b00990\">https://doi.org/10.1021/acs.nanolett.5b00990</a>.","ama":"Kotiuga M, Darancet P, Arroyo CR, Venkataraman L, Neaton JB. Adsorption-induced solvent-based electrostatic gating of charge transport through molecular junctions. <i>Nano Letters</i>. 2015;15(7):4498-4503. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.5b00990\">10.1021/acs.nanolett.5b00990</a>","apa":"Kotiuga, M., Darancet, P., Arroyo, C. R., Venkataraman, L., &#38; Neaton, J. B. (2015). Adsorption-induced solvent-based electrostatic gating of charge transport through molecular junctions. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.5b00990\">https://doi.org/10.1021/acs.nanolett.5b00990</a>"},"arxiv":1,"oa":1,"title":"Adsorption-induced solvent-based electrostatic gating of charge transport through molecular junctions","OA_type":"green","scopus_import":"1","date_updated":"2024-12-18T11:28:49Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1410.1439","open_access":"1"}],"type":"journal_article","publication_status":"published","status":"public","date_published":"2015-06-12T00:00:00Z","abstract":[{"lang":"eng","text":"Recent experiments have shown that transport properties of molecular-scale devices can be reversibly altered by the surrounding solvent. Here, we use a combination of first-principles calculations and experiment to explain this change in transport properties through a shift in the local electrostatic potential at the junction caused by nearby conducting and solvent molecules chemically bound to the electrodes. This effect is found to alter the conductance of 4,4′-bipyridine-gold junctions by more than 50%. Moreover, we develop a general electrostatic model that quantitatively relates the conductance and dipoles associated with the bound solvent and conducting molecules. Our work shows that solvent-induced effects can be used to control charge and energy transport at molecular-scale interfaces."}],"year":"2015","article_processing_charge":"No","publisher":"American Chemical Society","month":"06","OA_place":"repository","fulldoi":"https://doi.org/10.1021/acs.nanolett.5b00990","article_type":"letter_note","author":[{"first_name":"Michele","last_name":"Kotiuga","full_name":"Kotiuga, Michele"},{"last_name":"Darancet","full_name":"Darancet, Pierre","first_name":"Pierre"},{"first_name":"Carlos R.","last_name":"Arroyo","full_name":"Arroyo, Carlos R."},{"first_name":"Latha","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","full_name":"Venkataraman, Latha","last_name":"Venkataraman"},{"last_name":"Neaton","full_name":"Neaton, Jeffrey B.","first_name":"Jeffrey B."}],"publication_identifier":{"issn":["1530-6984"],"eissn":["1530-6992"]},"oa_version":"Preprint","extern":"1","day":"12"},{"fulldoi":"https://doi.org/10.1021/acs.nanolett.5b01270","author":[{"first_name":"Olgun","full_name":"Adak, Olgun","last_name":"Adak"},{"last_name":"Rosenthal","full_name":"Rosenthal, Ethan","first_name":"Ethan"},{"full_name":"Meisner, Jeffery","last_name":"Meisner","first_name":"Jeffery"},{"first_name":"Erick F.","full_name":"Andrade, Erick F.","last_name":"Andrade"},{"last_name":"Pasupathy","full_name":"Pasupathy, Abhay N.","first_name":"Abhay N."},{"first_name":"Colin","last_name":"Nuckolls","full_name":"Nuckolls, Colin"},{"first_name":"Mark S.","last_name":"Hybertsen","full_name":"Hybertsen, Mark S."},{"full_name":"Venkataraman, Latha","last_name":"Venkataraman","first_name":"Latha","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf"}],"article_type":"letter_note","oa_version":"None","publication_identifier":{"eissn":["1530-6992"],"issn":["1530-6984"]},"extern":"1","day":"05","type":"journal_article","status":"public","date_published":"2015-05-05T00:00:00Z","publication_status":"published","year":"2015","article_processing_charge":"No","publisher":"American Chemical Society","abstract":[{"lang":"eng","text":"Charge transport properties of metal–molecule interfaces depend strongly on the character of molecule–electrode interactions. Although through-bond coupled systems have attracted the most attention, through-space coupling is important in molecular systems when, for example, through-bond coupling is suppressed due to quantum interference effects. To date, a probe that clearly distinguishes these two types of coupling has not yet been demonstrated. Here, we investigate the origin of flicker noise in single molecule junctions and demonstrate how the character of the molecule–electrode coupling influences the flicker noise behavior of single molecule junctions. Importantly, we find that flicker noise shows a power law dependence on conductance in all junctions studied with an exponent that can distinguish through-space and through-bond coupling. Our results provide a new and powerful tool for probing and understanding coupling at the metal-molecule interface."}],"month":"05","page":"4143-4149","_id":"17970","volume":15,"citation":{"apa":"Adak, O., Rosenthal, E., Meisner, J., Andrade, E. F., Pasupathy, A. N., Nuckolls, C., … Venkataraman, L. (2015). Flicker noise as a probe of electronic interaction at metal–single molecule interfaces. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.5b01270\">https://doi.org/10.1021/acs.nanolett.5b01270</a>","ama":"Adak O, Rosenthal E, Meisner J, et al. Flicker noise as a probe of electronic interaction at metal–single molecule interfaces. <i>Nano Letters</i>. 2015;15(6):4143-4149. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.5b01270\">10.1021/acs.nanolett.5b01270</a>","chicago":"Adak, Olgun, Ethan Rosenthal, Jeffery Meisner, Erick F. Andrade, Abhay N. Pasupathy, Colin Nuckolls, Mark S. Hybertsen, and Latha Venkataraman. “Flicker Noise as a Probe of Electronic Interaction at Metal–Single Molecule Interfaces.” <i>Nano Letters</i>. American Chemical Society, 2015. <a href=\"https://doi.org/10.1021/acs.nanolett.5b01270\">https://doi.org/10.1021/acs.nanolett.5b01270</a>.","mla":"Adak, Olgun, et al. “Flicker Noise as a Probe of Electronic Interaction at Metal–Single Molecule Interfaces.” <i>Nano Letters</i>, vol. 15, no. 6, American Chemical Society, 2015, pp. 4143–49, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.5b01270\">10.1021/acs.nanolett.5b01270</a>.","ieee":"O. Adak <i>et al.</i>, “Flicker noise as a probe of electronic interaction at metal–single molecule interfaces,” <i>Nano Letters</i>, vol. 15, no. 6. American Chemical Society, pp. 4143–4149, 2015.","short":"O. Adak, E. Rosenthal, J. Meisner, E.F. Andrade, A.N. Pasupathy, C. Nuckolls, M.S. Hybertsen, L. Venkataraman, Nano Letters 15 (2015) 4143–4149.","ista":"Adak O, Rosenthal E, Meisner J, Andrade EF, Pasupathy AN, Nuckolls C, Hybertsen MS, Venkataraman L. 2015. Flicker noise as a probe of electronic interaction at metal–single molecule interfaces. Nano Letters. 15(6), 4143–4149."},"publication":"Nano Letters","scopus_import":"1","date_updated":"2024-12-18T11:32:55Z","OA_type":"closed access","title":"Flicker noise as a probe of electronic interaction at metal–single molecule interfaces","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1021/acs.nanolett.5b01270","language":[{"iso":"eng"}],"intvolume":"        15","issue":"6","pmid":1,"external_id":{"pmid":["25942441"]},"quality_controlled":"1","date_created":"2024-09-09T09:45:50Z"},{"issue":"6","external_id":{"arxiv":["1504.00242"]},"quality_controlled":"1","date_created":"2024-09-09T10:02:07Z","doi":"10.1021/acs.nanolett.5b01195","language":[{"iso":"eng"}],"intvolume":"        15","date_updated":"2024-12-18T11:37:35Z","scopus_import":"1","oa":1,"OA_type":"green","title":"Impact of electrode density of states on transport through pyridine-linked single molecule junctions","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1504.00242"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"3716-3722","volume":15,"_id":"17971","citation":{"short":"O. Adak, R. Korytár, A.Y. Joe, F. Evers, L. Venkataraman, Nano Letters 15 (2015) 3716–3722.","ista":"Adak O, Korytár R, Joe AY, Evers F, Venkataraman L. 2015. Impact of electrode density of states on transport through pyridine-linked single molecule junctions. Nano Letters. 15(6), 3716–3722.","ieee":"O. Adak, R. Korytár, A. Y. Joe, F. Evers, and L. Venkataraman, “Impact of electrode density of states on transport through pyridine-linked single molecule junctions,” <i>Nano Letters</i>, vol. 15, no. 6. American Chemical Society, pp. 3716–3722, 2015.","mla":"Adak, Olgun, et al. “Impact of Electrode Density of States on Transport through Pyridine-Linked Single Molecule Junctions.” <i>Nano Letters</i>, vol. 15, no. 6, American Chemical Society, 2015, pp. 3716–22, doi:<a href=\"https://doi.org/10.1021/acs.nanolett.5b01195\">10.1021/acs.nanolett.5b01195</a>.","ama":"Adak O, Korytár R, Joe AY, Evers F, Venkataraman L. Impact of electrode density of states on transport through pyridine-linked single molecule junctions. <i>Nano Letters</i>. 2015;15(6):3716-3722. doi:<a href=\"https://doi.org/10.1021/acs.nanolett.5b01195\">10.1021/acs.nanolett.5b01195</a>","chicago":"Adak, Olgun, Richard Korytár, Andrew Y. Joe, Ferdinand Evers, and Latha Venkataraman. “Impact of Electrode Density of States on Transport through Pyridine-Linked Single Molecule Junctions.” <i>Nano Letters</i>. American Chemical Society, 2015. <a href=\"https://doi.org/10.1021/acs.nanolett.5b01195\">https://doi.org/10.1021/acs.nanolett.5b01195</a>.","apa":"Adak, O., Korytár, R., Joe, A. Y., Evers, F., &#38; Venkataraman, L. (2015). Impact of electrode density of states on transport through pyridine-linked single molecule junctions. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.nanolett.5b01195\">https://doi.org/10.1021/acs.nanolett.5b01195</a>"},"arxiv":1,"publication":"Nano Letters","publisher":"American Chemical Society","article_processing_charge":"No","year":"2015","abstract":[{"text":"We study the impact of electrode band structure on transport through single-molecule junctions by measuring the conductance of pyridine-based molecules using Ag and Au electrodes. Our experiments are carried out using the scanning tunneling microscope based break-junction technique and are supported by density functional theory based calculations. We find from both experiments and calculations that the coupling of the dominant transport orbital to the metal is stronger for Au-based junctions when compared with Ag-based junctions. We attribute this difference to relativistic effects, which result in an enhanced density of d-states at the Fermi energy for Au compared with Ag. We further show that the alignment of the conducting orbital relative to the Fermi level does not follow the work function difference between two metals and is different for conjugated and saturated systems. We thus demonstrate that the details of the molecular level alignment and electronic coupling in metal–organic interfaces do not follow simple rules but are rather the consequence of subtle local interactions.","lang":"eng"}],"month":"05","type":"journal_article","date_published":"2015-05-28T00:00:00Z","status":"public","publication_status":"published","oa_version":"Preprint","publication_identifier":{"issn":["1530-6984"],"eissn":["1530-6992"]},"day":"28","extern":"1","fulldoi":"https://doi.org/10.1021/acs.nanolett.5b01195","OA_place":"repository","author":[{"full_name":"Adak, Olgun","last_name":"Adak","first_name":"Olgun"},{"first_name":"Richard","last_name":"Korytár","full_name":"Korytár, Richard"},{"full_name":"Joe, Andrew Y.","last_name":"Joe","first_name":"Andrew Y."},{"full_name":"Evers, Ferdinand","last_name":"Evers","first_name":"Ferdinand"},{"last_name":"Venkataraman","full_name":"Venkataraman, Latha","first_name":"Latha","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf"}],"article_type":"letter_note"},{"date_created":"2024-09-09T10:03:23Z","quality_controlled":"1","pmid":1,"external_id":{"pmid":["26005998"]},"issue":"6","intvolume":"        10","language":[{"iso":"eng"}],"doi":"10.1038/nnano.2015.97","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Single-molecule diodes with high rectification ratios through environmental control","OA_type":"closed access","scopus_import":"1","date_updated":"2024-12-18T12:03:16Z","publication":"Nature Nanotechnology","citation":{"apa":"Capozzi, B., Xia, J., Adak, O., Dell, E. J., Liu, Z.-F., Taylor, J. C., … Venkataraman, L. (2015). Single-molecule diodes with high rectification ratios through environmental control. <i>Nature Nanotechnology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nnano.2015.97\">https://doi.org/10.1038/nnano.2015.97</a>","ama":"Capozzi B, Xia J, Adak O, et al. Single-molecule diodes with high rectification ratios through environmental control. <i>Nature Nanotechnology</i>. 2015;10(6):522-527. doi:<a href=\"https://doi.org/10.1038/nnano.2015.97\">10.1038/nnano.2015.97</a>","chicago":"Capozzi, Brian, Jianlong Xia, Olgun Adak, Emma J. Dell, Zhen-Fei Liu, Jeffrey C. Taylor, Jeffrey B. Neaton, Luis M. Campos, and Latha Venkataraman. “Single-Molecule Diodes with High Rectification Ratios through Environmental Control.” <i>Nature Nanotechnology</i>. Springer Nature, 2015. <a href=\"https://doi.org/10.1038/nnano.2015.97\">https://doi.org/10.1038/nnano.2015.97</a>.","ieee":"B. Capozzi <i>et al.</i>, “Single-molecule diodes with high rectification ratios through environmental control,” <i>Nature Nanotechnology</i>, vol. 10, no. 6. Springer Nature, pp. 522–527, 2015.","mla":"Capozzi, Brian, et al. “Single-Molecule Diodes with High Rectification Ratios through Environmental Control.” <i>Nature Nanotechnology</i>, vol. 10, no. 6, Springer Nature, 2015, pp. 522–27, doi:<a href=\"https://doi.org/10.1038/nnano.2015.97\">10.1038/nnano.2015.97</a>.","short":"B. Capozzi, J. Xia, O. Adak, E.J. Dell, Z.-F. Liu, J.C. Taylor, J.B. Neaton, L.M. Campos, L. Venkataraman, Nature Nanotechnology 10 (2015) 522–527.","ista":"Capozzi B, Xia J, Adak O, Dell EJ, Liu Z-F, Taylor JC, Neaton JB, Campos LM, Venkataraman L. 2015. Single-molecule diodes with high rectification ratios through environmental control. Nature Nanotechnology. 10(6), 522–527."},"_id":"17972","volume":10,"page":"522-527","month":"06","abstract":[{"lang":"eng","text":"Molecular electronics aims to miniaturize electronic devices by using subnanometre-scale active components1,2,3. A single-molecule diode, a circuit element that directs current flow4, was first proposed more than 40 years ago5 and consisted of an asymmetric molecule comprising a donor–bridge–acceptor architecture to mimic a semiconductor p–n junction. Several single-molecule diodes have since been realized in junctions featuring asymmetric molecular backbones6,7,8, molecule–electrode linkers9 or electrode materials10. Despite these advances, molecular diodes have had limited potential for applications due to their low conductance, low rectification ratios, extreme sensitivity to the junction structure and high operating voltages7,8,9,11,12. Here, we demonstrate a powerful approach to induce current rectification in symmetric single-molecule junctions using two electrodes of the same metal, but breaking symmetry by exposing considerably different electrode areas to an ionic solution. This allows us to control the junction's electrostatic environment in an asymmetric fashion by simply changing the bias polarity. With this method, we reliably and reproducibly achieve rectification ratios in excess of 200 at voltages as low as 370 mV using a symmetric oligomer of thiophene-1,1-dioxide13,14. By taking advantage of the changes in the junction environment induced by the presence of an ionic solution, this method provides a general route for tuning nonlinear nanoscale device phenomena, which could potentially be applied in systems beyond single-molecule junctions."}],"article_processing_charge":"No","year":"2015","publisher":"Springer Nature","publication_status":"published","status":"public","date_published":"2015-06-01T00:00:00Z","type":"journal_article","extern":"1","day":"01","publication_identifier":{"eissn":["1748-3395"],"issn":["1748-3387"]},"oa_version":"None","article_type":"letter_note","author":[{"full_name":"Capozzi, Brian","last_name":"Capozzi","first_name":"Brian"},{"first_name":"Jianlong","full_name":"Xia, Jianlong","last_name":"Xia"},{"full_name":"Adak, Olgun","last_name":"Adak","first_name":"Olgun"},{"full_name":"Dell, Emma J.","last_name":"Dell","first_name":"Emma J."},{"first_name":"Zhen-Fei","full_name":"Liu, Zhen-Fei","last_name":"Liu"},{"first_name":"Jeffrey C.","full_name":"Taylor, Jeffrey C.","last_name":"Taylor"},{"first_name":"Jeffrey B.","full_name":"Neaton, Jeffrey B.","last_name":"Neaton"},{"first_name":"Luis M.","last_name":"Campos","full_name":"Campos, Luis M."},{"full_name":"Venkataraman, Latha","last_name":"Venkataraman","first_name":"Latha","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf"}],"fulldoi":"https://doi.org/10.1038/nnano.2015.97"},{"fulldoi":"https://doi.org/10.1021/ja512523r","author":[{"first_name":"Haixing","full_name":"Li, Haixing","last_name":"Li"},{"first_name":"Timothy A.","full_name":"Su, Timothy A.","last_name":"Su"},{"first_name":"Vivian","last_name":"Zhang","full_name":"Zhang, Vivian"},{"first_name":"Michael L.","last_name":"Steigerwald","full_name":"Steigerwald, Michael L."},{"full_name":"Nuckolls, Colin","last_name":"Nuckolls","first_name":"Colin"},{"orcid":"0000-0002-6957-6089","first_name":"Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","last_name":"Venkataraman","full_name":"Venkataraman, Latha"}],"article_type":"original","oa_version":"None","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"day":"12","extern":"1","type":"journal_article","date_published":"2015-02-12T00:00:00Z","status":"public","publication_status":"published","publisher":"American Chemical Society","article_processing_charge":"No","year":"2015","abstract":[{"text":"Here we study the stability and rupture of molecular junctions under high voltage bias at the single molecule/single bond level using the scanning tunneling microscope-based break-junction technique. We synthesize carbon-, silicon-, and germanium-based molecular wires terminated by aurophilic linker groups and study how the molecular backbone and linker group affect the probability of voltage-induced junction rupture. First, we find that junctions formed with covalent S–Au bonds are robust under high voltage and their rupture does not demonstrate bias dependence within our bias range. In contrast, junctions formed through donor–acceptor bonds rupture more frequently, and their rupture probability demonstrates a strong bias dependence. Moreover, we find that the junction rupture probability increases significantly above ∼1 V in junctions formed from methylthiol-terminated disilanes and digermanes, indicating a voltage-induced rupture of individual Si–Si and Ge–Ge bonds. Finally, we compare the rupture probabilities of the thiol-terminated silane derivatives containing Si–Si, Si–C, and Si–O bonds and find that Si–C backbones have higher probabilities of sustaining the highest voltage. These results establish a new method for studying electric field breakdown phenomena at the single molecule level.","lang":"eng"}],"month":"02","page":"5028-5033","_id":"17973","volume":137,"citation":{"ama":"Li H, Su TA, Zhang V, Steigerwald ML, Nuckolls C, Venkataraman L. Electric field breakdown in single molecule junctions. <i>Journal of the American Chemical Society</i>. 2015;137(15):5028-5033. doi:<a href=\"https://doi.org/10.1021/ja512523r\">10.1021/ja512523r</a>","chicago":"Li, Haixing, Timothy A. Su, Vivian Zhang, Michael L. Steigerwald, Colin Nuckolls, and Latha Venkataraman. “Electric Field Breakdown in Single Molecule Junctions.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2015. <a href=\"https://doi.org/10.1021/ja512523r\">https://doi.org/10.1021/ja512523r</a>.","apa":"Li, H., Su, T. A., Zhang, V., Steigerwald, M. L., Nuckolls, C., &#38; Venkataraman, L. (2015). Electric field breakdown in single molecule junctions. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja512523r\">https://doi.org/10.1021/ja512523r</a>","short":"H. Li, T.A. Su, V. Zhang, M.L. Steigerwald, C. Nuckolls, L. Venkataraman, Journal of the American Chemical Society 137 (2015) 5028–5033.","ista":"Li H, Su TA, Zhang V, Steigerwald ML, Nuckolls C, Venkataraman L. 2015. Electric field breakdown in single molecule junctions. Journal of the American Chemical Society. 137(15), 5028–5033.","ieee":"H. Li, T. A. Su, V. Zhang, M. L. Steigerwald, C. Nuckolls, and L. Venkataraman, “Electric field breakdown in single molecule junctions,” <i>Journal of the American Chemical Society</i>, vol. 137, no. 15. American Chemical Society, pp. 5028–5033, 2015.","mla":"Li, Haixing, et al. “Electric Field Breakdown in Single Molecule Junctions.” <i>Journal of the American Chemical Society</i>, vol. 137, no. 15, American Chemical Society, 2015, pp. 5028–33, doi:<a href=\"https://doi.org/10.1021/ja512523r\">10.1021/ja512523r</a>."},"publication":"Journal of the American Chemical Society","date_updated":"2024-12-18T12:10:06Z","scopus_import":"1","title":"Electric field breakdown in single molecule junctions","OA_type":"closed access","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1021/ja512523r","language":[{"iso":"eng"}],"intvolume":"       137","issue":"15","external_id":{"pmid":["25675085"]},"pmid":1,"quality_controlled":"1","date_created":"2024-09-09T10:04:02Z"},{"doi":"10.1039/c5cs90010g","language":[{"iso":"eng"}],"intvolume":"        44","issue":"4","pmid":1,"external_id":{"pmid":["25636152"]},"quality_controlled":"1","date_created":"2024-09-09T10:53:55Z","page":"842-844","_id":"17974","volume":44,"citation":{"ama":"Guldi DM, Nishihara H, Venkataraman L. Molecular wires. <i>Chemical Society Reviews</i>. 2015;44(4):842-844. doi:<a href=\"https://doi.org/10.1039/c5cs90010g\">10.1039/c5cs90010g</a>","chicago":"Guldi, Dirk M., Hiroshi Nishihara, and Latha Venkataraman. “Molecular Wires.” <i>Chemical Society Reviews</i>. Royal Society of Chemistry, 2015. <a href=\"https://doi.org/10.1039/c5cs90010g\">https://doi.org/10.1039/c5cs90010g</a>.","apa":"Guldi, D. M., Nishihara, H., &#38; Venkataraman, L. (2015). Molecular wires. <i>Chemical Society Reviews</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c5cs90010g\">https://doi.org/10.1039/c5cs90010g</a>","short":"D.M. Guldi, H. Nishihara, L. Venkataraman, Chemical Society Reviews 44 (2015) 842–844.","ista":"Guldi DM, Nishihara H, Venkataraman L. 2015. Molecular wires. Chemical Society Reviews. 44(4), 842–844.","ieee":"D. M. Guldi, H. Nishihara, and L. Venkataraman, “Molecular wires,” <i>Chemical Society Reviews</i>, vol. 44, no. 4. Royal Society of Chemistry, pp. 842–844, 2015.","mla":"Guldi, Dirk M., et al. “Molecular Wires.” <i>Chemical Society Reviews</i>, vol. 44, no. 4, Royal Society of Chemistry, 2015, pp. 842–44, doi:<a href=\"https://doi.org/10.1039/c5cs90010g\">10.1039/c5cs90010g</a>."},"publication":"Chemical Society Reviews","scopus_import":"1","date_updated":"2025-01-02T13:26:36Z","title":"Molecular wires","OA_type":"closed access","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","status":"public","date_published":"2015-01-30T00:00:00Z","publication_status":"published","year":"2015","article_processing_charge":"No","publisher":"Royal Society of Chemistry","abstract":[{"lang":"eng","text":"Guest editors Dirk M. Guldi, Hiroshi Nishihara and Latha Venkataraman introduce the Molecular Wires issue of \"Chemical Society Reviews\"."}],"month":"01","fulldoi":"https://doi.org/10.1039/c5cs90010g","author":[{"first_name":"Dirk M.","full_name":"Guldi, Dirk M.","last_name":"Guldi"},{"first_name":"Hiroshi","full_name":"Nishihara, Hiroshi","last_name":"Nishihara"},{"last_name":"Venkataraman","full_name":"Venkataraman, Latha","first_name":"Latha","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf"}],"article_type":"letter_note","oa_version":"None","publication_identifier":{"issn":["0306-0012"],"eissn":["1460-4744"]},"extern":"1","day":"30"},{"type":"journal_article","status":"public","date_published":"2015-02-16T00:00:00Z","publication_status":"published","publisher":"Springer Nature","year":"2015","article_processing_charge":"No","abstract":[{"lang":"eng","text":"A new intersection between reaction chemistry and electronic circuitry is emerging from the ultraminiaturization of electronic devices. Over decades chemists have developed a nuanced understanding of stereoelectronics to establish how the electronic properties of molecules relate to their conformation; the recent advent of single-molecule break-junction techniques provides the means to alter this conformation with a level of control previously unimagined. Here we unite these ideas by demonstrating the first single-molecule switch that operates through a stereoelectronic effect. We demonstrate this behaviour in permethyloligosilanes with methylthiomethyl electrode linkers. The strong σ conjugation in the oligosilane backbone couples the stereoelectronic properties of the sulfur–methylene σ bonds that terminate the molecule. Theoretical calculations support the existence of three distinct dihedral conformations that differ drastically in their electronic character. We can shift between these three species by simply lengthening or compressing the molecular junction, and, in doing so, we can switch conductance digitally between two states."}],"month":"02","fulldoi":"https://doi.org/10.1038/nchem.2180","author":[{"first_name":"Timothy A.","full_name":"Su, Timothy A.","last_name":"Su"},{"first_name":"Haixing","full_name":"Li, Haixing","last_name":"Li"},{"first_name":"Michael L.","full_name":"Steigerwald, Michael L.","last_name":"Steigerwald"},{"orcid":"0000-0002-6957-6089","first_name":"Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","full_name":"Venkataraman, Latha","last_name":"Venkataraman"},{"first_name":"Colin","last_name":"Nuckolls","full_name":"Nuckolls, Colin"}],"article_type":"original","oa_version":"None","publication_identifier":{"eissn":["1755-4349"],"issn":["1755-4330"]},"day":"16","extern":"1","doi":"10.1038/nchem.2180","language":[{"iso":"eng"}],"intvolume":"         7","issue":"3","external_id":{"pmid":["25698330"]},"pmid":1,"quality_controlled":"1","date_created":"2024-09-09T10:54:59Z","page":"215-220","_id":"17975","volume":7,"citation":{"ista":"Su TA, Li H, Steigerwald ML, Venkataraman L, Nuckolls C. 2015. Stereoelectronic switching in single-molecule junctions. Nature Chemistry. 7(3), 215–220.","short":"T.A. Su, H. Li, M.L. Steigerwald, L. Venkataraman, C. Nuckolls, Nature Chemistry 7 (2015) 215–220.","mla":"Su, Timothy A., et al. “Stereoelectronic Switching in Single-Molecule Junctions.” <i>Nature Chemistry</i>, vol. 7, no. 3, Springer Nature, 2015, pp. 215–20, doi:<a href=\"https://doi.org/10.1038/nchem.2180\">10.1038/nchem.2180</a>.","ieee":"T. A. Su, H. Li, M. L. Steigerwald, L. Venkataraman, and C. Nuckolls, “Stereoelectronic switching in single-molecule junctions,” <i>Nature Chemistry</i>, vol. 7, no. 3. Springer Nature, pp. 215–220, 2015.","chicago":"Su, Timothy A., Haixing Li, Michael L. Steigerwald, Latha Venkataraman, and Colin Nuckolls. “Stereoelectronic Switching in Single-Molecule Junctions.” <i>Nature Chemistry</i>. Springer Nature, 2015. <a href=\"https://doi.org/10.1038/nchem.2180\">https://doi.org/10.1038/nchem.2180</a>.","ama":"Su TA, Li H, Steigerwald ML, Venkataraman L, Nuckolls C. Stereoelectronic switching in single-molecule junctions. <i>Nature Chemistry</i>. 2015;7(3):215-220. doi:<a href=\"https://doi.org/10.1038/nchem.2180\">10.1038/nchem.2180</a>","apa":"Su, T. A., Li, H., Steigerwald, M. L., Venkataraman, L., &#38; Nuckolls, C. (2015). Stereoelectronic switching in single-molecule junctions. <i>Nature Chemistry</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nchem.2180\">https://doi.org/10.1038/nchem.2180</a>"},"publication":"Nature Chemistry","date_updated":"2025-01-02T13:28:51Z","scopus_import":"1","OA_type":"closed access","title":"Stereoelectronic switching in single-molecule junctions","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-01-02T13:35:46Z","scopus_import":"1","title":"Molecular length dictates the nature of charge carriers in single-molecule junctions of oxidized oligothiophenes","OA_type":"closed access","citation":{"ista":"Dell EJ, Capozzi B, Xia J, Venkataraman L, Campos LM. 2015. Molecular length dictates the nature of charge carriers in single-molecule junctions of oxidized oligothiophenes. Nature Chemistry. 7(3), 209–214.","short":"E.J. Dell, B. Capozzi, J. Xia, L. Venkataraman, L.M. Campos, Nature Chemistry 7 (2015) 209–214.","ieee":"E. J. Dell, B. Capozzi, J. Xia, L. Venkataraman, and L. M. Campos, “Molecular length dictates the nature of charge carriers in single-molecule junctions of oxidized oligothiophenes,” <i>Nature Chemistry</i>, vol. 7, no. 3. Springer Nature, pp. 209–214, 2015.","mla":"Dell, Emma J., et al. “Molecular Length Dictates the Nature of Charge Carriers in Single-Molecule Junctions of Oxidized Oligothiophenes.” <i>Nature Chemistry</i>, vol. 7, no. 3, Springer Nature, 2015, pp. 209–14, doi:<a href=\"https://doi.org/10.1038/nchem.2160\">10.1038/nchem.2160</a>.","chicago":"Dell, Emma J., Brian Capozzi, Jianlong Xia, Latha Venkataraman, and Luis M. Campos. “Molecular Length Dictates the Nature of Charge Carriers in Single-Molecule Junctions of Oxidized Oligothiophenes.” <i>Nature Chemistry</i>. Springer Nature, 2015. <a href=\"https://doi.org/10.1038/nchem.2160\">https://doi.org/10.1038/nchem.2160</a>.","ama":"Dell EJ, Capozzi B, Xia J, Venkataraman L, Campos LM. Molecular length dictates the nature of charge carriers in single-molecule junctions of oxidized oligothiophenes. <i>Nature Chemistry</i>. 2015;7(3):209-214. doi:<a href=\"https://doi.org/10.1038/nchem.2160\">10.1038/nchem.2160</a>","apa":"Dell, E. J., Capozzi, B., Xia, J., Venkataraman, L., &#38; Campos, L. M. (2015). Molecular length dictates the nature of charge carriers in single-molecule junctions of oxidized oligothiophenes. <i>Nature Chemistry</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nchem.2160\">https://doi.org/10.1038/nchem.2160</a>"},"publication":"Nature Chemistry","page":"209-214","volume":7,"_id":"17976","quality_controlled":"1","date_created":"2024-09-09T10:55:42Z","issue":"3","external_id":{"pmid":["25698329"]},"pmid":1,"intvolume":"         7","doi":"10.1038/nchem.2160","language":[{"iso":"eng"}],"day":"02","extern":"1","oa_version":"None","publication_identifier":{"eissn":["1755-4349"],"issn":["1755-4330"]},"author":[{"full_name":"Dell, Emma J.","last_name":"Dell","first_name":"Emma J."},{"first_name":"Brian","last_name":"Capozzi","full_name":"Capozzi, Brian"},{"full_name":"Xia, Jianlong","last_name":"Xia","first_name":"Jianlong"},{"id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","first_name":"Latha","orcid":"0000-0002-6957-6089","last_name":"Venkataraman","full_name":"Venkataraman, Latha"},{"first_name":"Luis M.","last_name":"Campos","full_name":"Campos, Luis M."}],"article_type":"original","fulldoi":"https://doi.org/10.1038/nchem.2160","month":"02","publisher":"Springer Nature","year":"2015","article_processing_charge":"No","abstract":[{"text":"To develop advanced materials for electronic devices, it is of utmost importance to design organic building blocks with tunable functionality and to study their properties at the molecular level. For organic electronic and photovoltaic applications, the ability to vary the nature of charge carriers and so create either electron donors or acceptors is critical. Here we demonstrate that charge carriers in single-molecule junctions can be tuned within a family of molecules that contain electron-deficient thiophene-1,1-dioxide (TDO) building blocks. Oligomers of TDO were designed to increase electron affinity and maintain delocalized frontier orbitals while significantly decreasing the transport gap. Through thermopower measurements we show that the dominant charge carriers change from holes to electrons as the number of TDO units is increased. This results in a unique system in which the charge carrier depends on the backbone length, and provides a new means to tune p- and n-type transport in organic materials.","lang":"eng"}],"status":"public","date_published":"2015-02-02T00:00:00Z","publication_status":"published","type":"journal_article"},{"intvolume":"        18","doi":"10.1038/nn.4023","language":[{"iso":"eng"}],"quality_controlled":"1","date_created":"2018-12-11T11:54:05Z","acknowledgement":"S.S. was supported by a Human Frontier Science Program (HFSP) long-term postdoctoral fellowship and a Swiss National Science Foundation fellowship for prospective researchers. E.J.K. was supported by a Simons Foundation Postdoctoral Fellowship. A.R. was supported by a NARSAD Young Investigator Award. This work was supported by a Seed Grant from the Simons Center for the Social Brain and US National Institutes of Health grant RO1 MH 091115 to L.-H.T.","pmid":1,"external_id":{"pmid":[" 26005852"]},"citation":{"ieee":"S. Siegert <i>et al.</i>, “The schizophrenia risk gene product miR-137 alters presynaptic plasticity,” <i>Nature Neuroscience</i>, vol. 18. Springer Nature, pp. 1008–1016, 2015.","mla":"Siegert, Sandra, et al. “The Schizophrenia Risk Gene Product MiR-137 Alters Presynaptic Plasticity.” <i>Nature Neuroscience</i>, vol. 18, Springer Nature, 2015, pp. 1008–16, doi:<a href=\"https://doi.org/10.1038/nn.4023\">10.1038/nn.4023</a>.","short":"S. Siegert, J. Seo, E. Kwon, A. Rudenko, S. Cho, W. Wang, Z. Flood, A. Martorell, M. Ericsson, A. Mungenast, L. Tsai, Nature Neuroscience 18 (2015) 1008–1016.","ista":"Siegert S, Seo J, Kwon E, Rudenko A, Cho S, Wang W, Flood Z, Martorell A, Ericsson M, Mungenast A, Tsai L. 2015. The schizophrenia risk gene product miR-137 alters presynaptic plasticity. Nature Neuroscience. 18, 1008–1016.","apa":"Siegert, S., Seo, J., Kwon, E., Rudenko, A., Cho, S., Wang, W., … Tsai, L. (2015). The schizophrenia risk gene product miR-137 alters presynaptic plasticity. <i>Nature Neuroscience</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nn.4023\">https://doi.org/10.1038/nn.4023</a>","ama":"Siegert S, Seo J, Kwon E, et al. The schizophrenia risk gene product miR-137 alters presynaptic plasticity. <i>Nature Neuroscience</i>. 2015;18:1008-1016. doi:<a href=\"https://doi.org/10.1038/nn.4023\">10.1038/nn.4023</a>","chicago":"Siegert, Sandra, Jinsoo Seo, Ester Kwon, Andrii Rudenko, Sukhee Cho, Wenyuan Wang, Zachary Flood, et al. “The Schizophrenia Risk Gene Product MiR-137 Alters Presynaptic Plasticity.” <i>Nature Neuroscience</i>. Springer Nature, 2015. <a href=\"https://doi.org/10.1038/nn.4023\">https://doi.org/10.1038/nn.4023</a>."},"publication":"Nature Neuroscience","page":"1008 - 1016","volume":18,"_id":"1802","main_file_link":[{"url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC4506960/","open_access":"1"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","scopus_import":"1","date_updated":"2026-05-18T12:29:48Z","title":"The schizophrenia risk gene product miR-137 alters presynaptic plasticity","oa":1,"OA_type":"green","date_published":"2015-07-01T00:00:00Z","status":"public","publication_status":"published","type":"journal_article","month":"07","article_processing_charge":"No","year":"2015","publisher":"Springer Nature","abstract":[{"lang":"eng","text":"Noncoding variants in the human MIR137 gene locus increase schizophrenia risk with genome-wide significance. However, the functional consequence of these risk alleles is unknown. Here we examined induced human neurons harboring the minor alleles of four disease-associated single nucleotide polymorphisms in MIR137. We observed increased MIR137 levels compared to those in major allele–carrying cells. microRNA-137 gain of function caused downregulation of the presynaptic target genes complexin-1 (Cplx1), Nsf and synaptotagmin-1 (Syt1), leading to impaired vesicle release. In vivo, miR-137 gain of function resulted in changes in synaptic vesicle pool distribution, impaired induction of mossy fiber long-term potentiation and deficits in hippocampus-dependent learning and memory. By sequestering endogenous miR-137, we were able to ameliorate the synaptic phenotypes. Moreover, reinstatement of Syt1 expression partially restored synaptic plasticity, demonstrating the importance of Syt1 as a miR-137 target. Our data provide new insight into the mechanism by which miR-137 dysregulation can impair synaptic plasticity in the hippocampus."}],"related_material":{"link":[{"url":"https://doi.org/10.1038/nn0816-1115c","relation":"erratum"}]},"author":[{"id":"36ACD32E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8635-0877","first_name":"Sandra","full_name":"Siegert, Sandra","last_name":"Siegert"},{"first_name":"Jinsoo","last_name":"Seo","full_name":"Seo, Jinsoo"},{"first_name":"Ester","full_name":"Kwon, Ester","last_name":"Kwon"},{"last_name":"Rudenko","full_name":"Rudenko, Andrii","first_name":"Andrii"},{"full_name":"Cho, Sukhee","last_name":"Cho","first_name":"Sukhee"},{"first_name":"Wenyuan","last_name":"Wang","full_name":"Wang, Wenyuan"},{"full_name":"Flood, Zachary","last_name":"Flood","first_name":"Zachary"},{"last_name":"Martorell","full_name":"Martorell, Anthony","first_name":"Anthony"},{"first_name":"Maria","full_name":"Ericsson, Maria","last_name":"Ericsson"},{"first_name":"Alison","last_name":"Mungenast","full_name":"Mungenast, Alison"},{"first_name":"Lihuei","last_name":"Tsai","full_name":"Tsai, Lihuei"}],"article_type":"original","fulldoi":"https://doi.org/10.1038/nn.4023","OA_place":"repository","publist_id":"5308","extern":"1","day":"01","oa_version":"Accepted Version","publication_identifier":{"eissn":["1546-1726"],"issn":["1097-6256"]}},{"publist_id":"5307","day":"09","extern":1,"date_updated":"2021-01-12T06:53:18Z","title":"Basolateral amygdala bidirectionally modulates stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent pathway","author":[{"last_name":"Rei","full_name":"Rei, Damien","first_name":"Damien"},{"first_name":"Xenos","full_name":"Mason, Xenos","last_name":"Mason"},{"first_name":"Jinsoo","full_name":"Seo, Jinsoo","last_name":"Seo"},{"first_name":"Johannes","full_name":"Gräff, Johannes","last_name":"Gräff"},{"first_name":"Andrii","last_name":"Rudenko","full_name":"Rudenko, Andrii"},{"last_name":"Wang","full_name":"Wang, Jùn","first_name":"Jùn"},{"first_name":"Richard","last_name":"Rueda","full_name":"Rueda, Richard"},{"id":"36ACD32E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8635-0877","first_name":"Sandra","full_name":"Sandra Siegert","last_name":"Siegert"},{"last_name":"Cho","full_name":"Cho, Sukhee","first_name":"Sukhee"},{"first_name":"Rebecca","full_name":"Canter, Rebecca G","last_name":"Canter"},{"first_name":"Alison","full_name":"Mungenast, Alison E","last_name":"Mungenast"},{"last_name":"Deisseroth","full_name":"Deisseroth, Karl A","first_name":"Karl"},{"last_name":"Tsai","full_name":"Tsai, Lihuei","first_name":"Lihuei"}],"citation":{"short":"D. Rei, X. Mason, J. Seo, J. Gräff, A. Rudenko, J. Wang, R. Rueda, S. Siegert, S. Cho, R. Canter, A. Mungenast, K. Deisseroth, L. Tsai, PNAS 112 (2015) 7291–7296.","ista":"Rei D, Mason X, Seo J, Gräff J, Rudenko A, Wang J, Rueda R, Siegert S, Cho S, Canter R, Mungenast A, Deisseroth K, Tsai L. 2015. Basolateral amygdala bidirectionally modulates stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent pathway. PNAS. 112(23), 7291–7296.","ieee":"D. Rei <i>et al.</i>, “Basolateral amygdala bidirectionally modulates stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent pathway,” <i>PNAS</i>, vol. 112, no. 23. National Academy of Sciences, pp. 7291–7296, 2015.","mla":"Rei, Damien, et al. “Basolateral Amygdala Bidirectionally Modulates Stress Induced Hippocampal Learning and Memory Deficits through a P25/Cdk5-Dependent Pathway.” <i>PNAS</i>, vol. 112, no. 23, National Academy of Sciences, 2015, pp. 7291–96, doi:<a href=\"https://doi.org/10.1073/pnas.1415845112\">10.1073/pnas.1415845112</a>.","ama":"Rei D, Mason X, Seo J, et al. Basolateral amygdala bidirectionally modulates stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent pathway. <i>PNAS</i>. 2015;112(23):7291-7296. doi:<a href=\"https://doi.org/10.1073/pnas.1415845112\">10.1073/pnas.1415845112</a>","chicago":"Rei, Damien, Xenos Mason, Jinsoo Seo, Johannes Gräff, Andrii Rudenko, Jùn Wang, Richard Rueda, et al. “Basolateral Amygdala Bidirectionally Modulates Stress Induced Hippocampal Learning and Memory Deficits through a P25/Cdk5-Dependent Pathway.” <i>PNAS</i>. National Academy of Sciences, 2015. <a href=\"https://doi.org/10.1073/pnas.1415845112\">https://doi.org/10.1073/pnas.1415845112</a>.","apa":"Rei, D., Mason, X., Seo, J., Gräff, J., Rudenko, A., Wang, J., … Tsai, L. (2015). Basolateral amygdala bidirectionally modulates stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent pathway. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1415845112\">https://doi.org/10.1073/pnas.1415845112</a>"},"publication":"PNAS","fulldoi":"https://doi.org/10.1073/pnas.1415845112","page":"7291 - 7296","volume":112,"_id":"1803","month":"06","quality_controlled":0,"acknowledgement":"AG047661; NIH; Schweizerische Nationalfonds zur Förderung der Wissenschaftlichen Forschung\nNS051874; NIH; Schweizerische Nationalfonds zur Förderung der Wissenschaftlichen Forschung\nSNSF; Schweizerische Nationalfonds zur Förderung der Wissenschaftlichen Forschung","date_created":"2018-12-11T11:54:06Z","publisher":"National Academy of Sciences","issue":"23","year":"2015","abstract":[{"text":"Repeated stress has been suggested to underlie learning and memory deficits via the basolateral amygdala (BLA) and the hippocampus; however, the functional contribution of BLA inputs to the hippocampus and their molecular repercussions are not well understood. Here we show that repeated stress is accompanied by generation of the Cdk5 (cyclin-dependent kinase 5)-activator p25, up-regulation and phosphorylation of glucocorticoid receptors, increased HDAC2 expression, and reduced expression of memoryrelated genes in the hippocampus. A combination of optogenetic and pharmacosynthetic approaches shows that BLA activation is both necessary and sufficient for stress-associated molecular changes and memory impairments. Furthermore, we show that this effect relies on direct glutamatergic projections from the BLA to the dorsal hippocampus. Finally, we show that p25 generation is necessary for the stress-induced memory dysfunction. Taken together, our data provide a neural circuit model for stress-induced hippocampal memory deficits through BLA activity-dependent p25 generation.","lang":"eng"}],"status":"public","date_published":"2015-06-09T00:00:00Z","intvolume":"       112","publication_status":"published","type":"journal_article","doi":"10.1073/pnas.1415845112"},{"date_created":"2018-12-11T11:54:06Z","quality_controlled":"1","external_id":{"isi":["000356150200001"]},"article_number":"10781","ddc":["530"],"isi":1,"intvolume":"         5","language":[{"iso":"eng"}],"doi":"10.1038/srep10781","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa":1,"title":"Transition to turbulence in Taylor-Couette ferrofluidic flow","date_updated":"2025-09-29T10:58:13Z","scopus_import":"1","publication":"Scientific Reports","citation":{"ista":"Altmeyer S, Do Y, Lai Y. 2015. Transition to turbulence in Taylor-Couette ferrofluidic flow. Scientific Reports. 5, 10781.","short":"S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).","mla":"Altmeyer, Sebastian, et al. “Transition to Turbulence in Taylor-Couette Ferrofluidic Flow.” <i>Scientific Reports</i>, vol. 5, 10781, Nature Publishing Group, 2015, doi:<a href=\"https://doi.org/10.1038/srep10781\">10.1038/srep10781</a>.","ieee":"S. Altmeyer, Y. Do, and Y. Lai, “Transition to turbulence in Taylor-Couette ferrofluidic flow,” <i>Scientific Reports</i>, vol. 5. Nature Publishing Group, 2015.","chicago":"Altmeyer, Sebastian, Younghae Do, and Ying Lai. “Transition to Turbulence in Taylor-Couette Ferrofluidic Flow.” <i>Scientific Reports</i>. Nature Publishing Group, 2015. <a href=\"https://doi.org/10.1038/srep10781\">https://doi.org/10.1038/srep10781</a>.","ama":"Altmeyer S, Do Y, Lai Y. Transition to turbulence in Taylor-Couette ferrofluidic flow. <i>Scientific Reports</i>. 2015;5. doi:<a href=\"https://doi.org/10.1038/srep10781\">10.1038/srep10781</a>","apa":"Altmeyer, S., Do, Y., &#38; Lai, Y. (2015). Transition to turbulence in Taylor-Couette ferrofluidic flow. <i>Scientific Reports</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/srep10781\">https://doi.org/10.1038/srep10781</a>"},"file":[{"date_updated":"2020-07-14T12:45:16Z","relation":"main_file","file_name":"IST-2016-450-v1+1_srep10781.pdf","content_type":"application/pdf","file_id":"5280","file_size":2449723,"access_level":"open_access","date_created":"2018-12-12T10:17:26Z","creator":"system","checksum":"7716f582f8c9d82d8f2bf80bf896b440"}],"_id":"1804","volume":5,"month":"06","abstract":[{"lang":"eng","text":"It is known that in classical fluids turbulence typically occurs at high Reynolds numbers. But can turbulence occur at low Reynolds numbers? Here we investigate the transition to turbulence in the classic Taylor-Couette system in which the rotating fluids are manufactured ferrofluids with magnetized nanoparticles embedded in liquid carriers. We find that, in the presence of a magnetic field transverse to the symmetry axis of the system, turbulence can occur at Reynolds numbers that are at least one order of magnitude smaller than those in conventional fluids. This is established by extensive computational ferrohydrodynamics through a detailed investigation of transitions in the flow structure, and characterization of behaviors of physical quantities such as the energy, the wave number, and the angular momentum through the bifurcations. A finding is that, as the magnetic field is increased, onset of turbulence can be determined accurately and reliably. Our results imply that experimental investigation of turbulence may be feasible by using ferrofluids. Our study of transition to and evolution of turbulence in the Taylor-Couette ferrofluidic flow system provides insights into the challenging problem of turbulence control."}],"publisher":"Nature Publishing Group","year":"2015","article_processing_charge":"No","pubrep_id":"450","publication_status":"published","date_published":"2015-06-12T00:00:00Z","status":"public","file_date_updated":"2020-07-14T12:45:16Z","type":"journal_article","day":"12","has_accepted_license":"1","publist_id":"5306","oa_version":"Published Version","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"author":[{"full_name":"Altmeyer, Sebastian","last_name":"Altmeyer","first_name":"Sebastian","orcid":"0000-0001-5964-0203","id":"2EE67FDC-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Do, Younghae","last_name":"Do","first_name":"Younghae"},{"last_name":"Lai","full_name":"Lai, Ying","first_name":"Ying"}],"department":[{"_id":"BjHo"}],"fulldoi":"https://doi.org/10.1038/srep10781","corr_author":"1"},{"day":"03","publist_id":"5305","oa_version":"Published Version","article_type":"original","related_material":{"record":[{"status":"public","id":"2812","relation":"earlier_version"}]},"department":[{"_id":"HeEd"}],"author":[{"full_name":"Attali, Dominique","last_name":"Attali","first_name":"Dominique"},{"id":"2ADD483A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9683-0724","first_name":"Ulrich","last_name":"Bauer","full_name":"Bauer, Ulrich"},{"first_name":"Olivier","full_name":"Devillers, Olivier","last_name":"Devillers"},{"first_name":"Marc","full_name":"Glisse, Marc","last_name":"Glisse"},{"full_name":"Lieutier, André","last_name":"Lieutier","first_name":"André"}],"OA_place":"publisher","ec_funded":1,"corr_author":"1","fulldoi":"https://doi.org/10.1016/j.comgeo.2014.08.010","month":"06","project":[{"call_identifier":"FP7","name":"Topological Complex Systems","_id":"255D761E-B435-11E9-9278-68D0E5697425","grant_number":"318493"}],"abstract":[{"text":"We consider the problem of deciding whether the persistent homology group of a simplicial pair (K,L) can be realized as the homology H∗(X) of some complex X with L ⊂ X ⊂ K. We show that this problem is NP-complete even if K is embedded in double-struck R3. As a consequence, we show that it is NP-hard to simplify level and sublevel sets of scalar functions on double-struck S3 within a given tolerance constraint. This problem has relevance to the visualization of medical images by isosurfaces. We also show an implication to the theory of well groups of scalar functions: not every well group can be realized by some level set, and deciding whether a well group can be realized is NP-hard.","lang":"eng"}],"year":"2015","article_processing_charge":"No","publisher":"Elsevier","publication_status":"published","status":"public","date_published":"2015-06-03T00:00:00Z","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.comgeo.2014.08.010"}],"title":"Homological reconstruction and simplification in R3","OA_type":"free access","oa":1,"scopus_import":"1","date_updated":"2026-06-18T17:57:28Z","publication":"Computational Geometry: Theory and Applications","citation":{"short":"D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, Computational Geometry: Theory and Applications 48 (2015) 606–621.","ista":"Attali D, Bauer U, Devillers O, Glisse M, Lieutier A. 2015. Homological reconstruction and simplification in R3. Computational Geometry: Theory and Applications. 48(8), 606–621.","mla":"Attali, Dominique, et al. “Homological Reconstruction and Simplification in R3.” <i>Computational Geometry: Theory and Applications</i>, vol. 48, no. 8, Elsevier, 2015, pp. 606–21, doi:<a href=\"https://doi.org/10.1016/j.comgeo.2014.08.010\">10.1016/j.comgeo.2014.08.010</a>.","ieee":"D. Attali, U. Bauer, O. Devillers, M. Glisse, and A. Lieutier, “Homological reconstruction and simplification in R3,” <i>Computational Geometry: Theory and Applications</i>, vol. 48, no. 8. Elsevier, pp. 606–621, 2015.","ama":"Attali D, Bauer U, Devillers O, Glisse M, Lieutier A. Homological reconstruction and simplification in R3. <i>Computational Geometry: Theory and Applications</i>. 2015;48(8):606-621. doi:<a href=\"https://doi.org/10.1016/j.comgeo.2014.08.010\">10.1016/j.comgeo.2014.08.010</a>","chicago":"Attali, Dominique, Ulrich Bauer, Olivier Devillers, Marc Glisse, and André Lieutier. “Homological Reconstruction and Simplification in R3.” <i>Computational Geometry: Theory and Applications</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.comgeo.2014.08.010\">https://doi.org/10.1016/j.comgeo.2014.08.010</a>.","apa":"Attali, D., Bauer, U., Devillers, O., Glisse, M., &#38; Lieutier, A. (2015). Homological reconstruction and simplification in R3. <i>Computational Geometry: Theory and Applications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.comgeo.2014.08.010\">https://doi.org/10.1016/j.comgeo.2014.08.010</a>"},"volume":48,"_id":"1805","page":"606 - 621","date_created":"2018-12-11T11:54:06Z","quality_controlled":"1","external_id":{"isi":["000357353200006"]},"issue":"8","ddc":["500"],"intvolume":"        48","isi":1,"language":[{"iso":"eng"}],"doi":"10.1016/j.comgeo.2014.08.010"},{"scopus_import":"1","date_updated":"2025-09-23T10:45:09Z","oa":1,"title":"Sharp interface limit for two components Bose-Einstein condensates","main_file_link":[{"url":"http://arxiv.org/abs/1401.1727","open_access":"1"}],"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","page":"603 - 624","volume":21,"_id":"1807","arxiv":1,"citation":{"ista":"Goldman M, Royo-Letelier J. 2015. Sharp interface limit for two components Bose-Einstein condensates. ESAIM - Control, Optimisation and Calculus of Variations. 21(3), 603–624.","short":"M. Goldman, J. Royo-Letelier, ESAIM - Control, Optimisation and Calculus of Variations 21 (2015) 603–624.","ieee":"M. Goldman and J. Royo-Letelier, “Sharp interface limit for two components Bose-Einstein condensates,” <i>ESAIM - Control, Optimisation and Calculus of Variations</i>, vol. 21, no. 3. EDP Sciences, pp. 603–624, 2015.","mla":"Goldman, Michael, and Jimena Royo-Letelier. “Sharp Interface Limit for Two Components Bose-Einstein Condensates.” <i>ESAIM - Control, Optimisation and Calculus of Variations</i>, vol. 21, no. 3, EDP Sciences, 2015, pp. 603–24, doi:<a href=\"https://doi.org/10.1051/cocv/2014040\">10.1051/cocv/2014040</a>.","chicago":"Goldman, Michael, and Jimena Royo-Letelier. “Sharp Interface Limit for Two Components Bose-Einstein Condensates.” <i>ESAIM - Control, Optimisation and Calculus of Variations</i>. EDP Sciences, 2015. <a href=\"https://doi.org/10.1051/cocv/2014040\">https://doi.org/10.1051/cocv/2014040</a>.","ama":"Goldman M, Royo-Letelier J. Sharp interface limit for two components Bose-Einstein condensates. <i>ESAIM - Control, Optimisation and Calculus of Variations</i>. 2015;21(3):603-624. doi:<a href=\"https://doi.org/10.1051/cocv/2014040\">10.1051/cocv/2014040</a>","apa":"Goldman, M., &#38; Royo-Letelier, J. (2015). Sharp interface limit for two components Bose-Einstein condensates. <i>ESAIM - Control, Optimisation and Calculus of Variations</i>. EDP Sciences. <a href=\"https://doi.org/10.1051/cocv/2014040\">https://doi.org/10.1051/cocv/2014040</a>"},"publication":"ESAIM - Control, Optimisation and Calculus of Variations","issue":"3","external_id":{"isi":["000356012000001"],"arxiv":["1401.1727"]},"quality_controlled":"1","date_created":"2018-12-11T11:54:07Z","doi":"10.1051/cocv/2014040","language":[{"iso":"eng"}],"intvolume":"        21","isi":1,"oa_version":"Preprint","publist_id":"5303","day":"01","corr_author":"1","fulldoi":"https://doi.org/10.1051/cocv/2014040","department":[{"_id":"RoSe"}],"author":[{"first_name":"Michael","last_name":"Goldman","full_name":"Goldman, Michael"},{"last_name":"Royo-Letelier","full_name":"Royo-Letelier, Jimena","first_name":"Jimena","id":"4D3BED28-F248-11E8-B48F-1D18A9856A87"}],"year":"2015","article_processing_charge":"No","publisher":"EDP Sciences","abstract":[{"text":"We study a double Cahn-Hilliard type functional related to the Gross-Pitaevskii energy of two-components Bose-Einstein condensates. In the case of large but same order intercomponent and intracomponent coupling strengths, we prove Γ-convergence to a perimeter minimisation functional with an inhomogeneous surface tension. We study the asymptotic behavior of the surface tension as the ratio between the intercomponent and intracomponent coupling strengths becomes very small or very large and obtain good agreement with the physical literature. We obtain as a consequence, symmetry breaking of the minimisers for the harmonic potential.","lang":"eng"}],"month":"05","type":"journal_article","date_published":"2015-05-01T00:00:00Z","status":"public","publication_status":"published"},{"title":"Guest editors' introduction to special issue on computational methods in systems biology","date_updated":"2025-09-23T09:11:51Z","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":25,"_id":"1808","publication":"ACM Transactions on Modeling and Computer Simulation","citation":{"ieee":"A. Gupta and T. A. Henzinger, “Guest editors’ introduction to special issue on computational methods in systems biology,” <i>ACM Transactions on Modeling and Computer Simulation</i>, vol. 25, no. 2. ACM, 2015.","mla":"Gupta, Ashutosh, and Thomas A. Henzinger. “Guest Editors’ Introduction to Special Issue on Computational Methods in Systems Biology.” <i>ACM Transactions on Modeling and Computer Simulation</i>, vol. 25, no. 2, 7, ACM, 2015, doi:<a href=\"https://doi.org/10.1145/2745799\">10.1145/2745799</a>.","ista":"Gupta A, Henzinger TA. 2015. Guest editors’ introduction to special issue on computational methods in systems biology. ACM Transactions on Modeling and Computer Simulation. 25(2), 7.","short":"A. Gupta, T.A. Henzinger, ACM Transactions on Modeling and Computer Simulation 25 (2015).","apa":"Gupta, A., &#38; Henzinger, T. A. (2015). Guest editors’ introduction to special issue on computational methods in systems biology. <i>ACM Transactions on Modeling and Computer Simulation</i>. ACM. <a href=\"https://doi.org/10.1145/2745799\">https://doi.org/10.1145/2745799</a>","chicago":"Gupta, Ashutosh, and Thomas A Henzinger. “Guest Editors’ Introduction to Special Issue on Computational Methods in Systems Biology.” <i>ACM Transactions on Modeling and Computer Simulation</i>. ACM, 2015. <a href=\"https://doi.org/10.1145/2745799\">https://doi.org/10.1145/2745799</a>.","ama":"Gupta A, Henzinger TA. Guest editors’ introduction to special issue on computational methods in systems biology. <i>ACM Transactions on Modeling and Computer Simulation</i>. 2015;25(2). doi:<a href=\"https://doi.org/10.1145/2745799\">10.1145/2745799</a>"},"external_id":{"isi":["000354789200001"]},"issue":"2","article_number":"7","date_created":"2018-12-11T11:54:07Z","quality_controlled":"1","language":[{"iso":"eng"}],"doi":"10.1145/2745799","isi":1,"intvolume":"        25","oa_version":"None","day":"01","publist_id":"5302","fulldoi":"https://doi.org/10.1145/2745799","author":[{"id":"335E5684-F248-11E8-B48F-1D18A9856A87","first_name":"Ashutosh","last_name":"Gupta","full_name":"Gupta, Ashutosh"},{"last_name":"Henzinger","full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A","orcid":"0000−0002−2985−7724"}],"department":[{"_id":"ToHe"}],"publisher":"ACM","year":"2015","article_processing_charge":"No","month":"05","type":"journal_article","publication_status":"published","status":"public","date_published":"2015-05-01T00:00:00Z"},{"intvolume":"        10","isi":1,"ddc":["570","576"],"doi":"10.1371/journal.pone.0126907","language":[{"iso":"eng"}],"quality_controlled":"1","date_created":"2018-12-11T11:54:07Z","issue":"5","external_id":{"isi":["000354917300064"]},"citation":{"mla":"Trubenova, Barbora, et al. “Indirect Genetic Effects and the Dynamics of Social Interactions.” <i>PLoS One</i>, vol. 10, no. 5, Public Library of Science, 2015, doi:<a href=\"https://doi.org/10.1371/journal.pone.0126907\">10.1371/journal.pone.0126907</a>.","ieee":"B. Trubenova, S. Novak, and R. Hager, “Indirect genetic effects and the dynamics of social interactions,” <i>PLoS One</i>, vol. 10, no. 5. Public Library of Science, 2015.","ista":"Trubenova B, Novak S, Hager R. 2015. Indirect genetic effects and the dynamics of social interactions. PLoS One. 10(5).","short":"B. Trubenova, S. Novak, R. Hager, PLoS One 10 (2015).","apa":"Trubenova, B., Novak, S., &#38; Hager, R. (2015). Indirect genetic effects and the dynamics of social interactions. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0126907\">https://doi.org/10.1371/journal.pone.0126907</a>","chicago":"Trubenova, Barbora, Sebastian Novak, and Reinmar Hager. “Indirect Genetic Effects and the Dynamics of Social Interactions.” <i>PLoS One</i>. Public Library of Science, 2015. <a href=\"https://doi.org/10.1371/journal.pone.0126907\">https://doi.org/10.1371/journal.pone.0126907</a>.","ama":"Trubenova B, Novak S, Hager R. Indirect genetic effects and the dynamics of social interactions. <i>PLoS One</i>. 2015;10(5). doi:<a href=\"https://doi.org/10.1371/journal.pone.0126907\">10.1371/journal.pone.0126907</a>"},"file":[{"checksum":"d3a4a58ef4bd3b3e2f32b7fd7af4a743","creator":"system","content_type":"application/pdf","file_name":"IST-2016-453-v1+1_journal.pone.0126907.pdf","relation":"main_file","file_size":2748982,"file_id":"4730","date_updated":"2020-07-14T12:45:17Z","access_level":"open_access","date_created":"2018-12-12T10:09:07Z"}],"publication":"PLoS One","_id":"1809","volume":10,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","date_updated":"2025-09-23T09:21:54Z","title":"Indirect genetic effects and the dynamics of social interactions","oa":1,"date_published":"2015-05-18T00:00:00Z","status":"public","publication_status":"published","pubrep_id":"453","type":"journal_article","file_date_updated":"2020-07-14T12:45:17Z","month":"05","article_processing_charge":"No","year":"2015","publisher":"Public Library of Science","abstract":[{"lang":"eng","text":"Background: Indirect genetic effects (IGEs) occur when genes expressed in one individual alter the expression of traits in social partners. Previous studies focused on the evolutionary consequences and evolutionary dynamics of IGEs, using equilibrium solutions to predict phenotypes in subsequent generations. However, whether or not such steady states may be reached may depend on the dynamics of interactions themselves. Results: In our study, we focus on the dynamics of social interactions and indirect genetic effects and investigate how they modify phenotypes over time. Unlike previous IGE studies, we do not analyse evolutionary dynamics; rather we consider within-individual phenotypic changes, also referred to as phenotypic plasticity. We analyse iterative interactions, when individuals interact in a series of discontinuous events, and investigate the stability of steady state solutions and the dependence on model parameters, such as population size, strength, and the nature of interactions. We show that for interactions where a feedback loop occurs, the possible parameter space of interaction strength is fairly limited, affecting the evolutionary consequences of IGEs. We discuss the implications of our results for current IGE model predictions and their limitations."}],"related_material":{"record":[{"relation":"research_data","id":"9715","status":"public"},{"id":"9772","relation":"research_data","status":"public"}]},"author":[{"full_name":"Trubenova, Barbora","last_name":"Trubenova","first_name":"Barbora","orcid":"0000-0002-6873-2967","id":"42302D54-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Novak","full_name":"Novak, Sebastian","first_name":"Sebastian","orcid":"0000-0002-2519-824X","id":"461468AE-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Reinmar","full_name":"Hager, Reinmar","last_name":"Hager"}],"department":[{"_id":"NiBa"}],"corr_author":"1","fulldoi":"https://doi.org/10.1371/journal.pone.0126907","publist_id":"5299","has_accepted_license":"1","day":"18","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version"},{"intvolume":"        27","isi":1,"ddc":["570"],"doi":"10.1016/j.mib.2015.05.008","language":[{"iso":"eng"}],"quality_controlled":"1","date_created":"2018-12-11T11:54:08Z","external_id":{"isi":["000365065400003"]},"file":[{"checksum":"1683bb0f42ef892a5b3b71a050d65d25","creator":"system","file_id":"5277","file_size":1047255,"content_type":"application/pdf","relation":"main_file","file_name":"IST-2016-493-v1+1_1-s2.0-S1369527415000594-main.pdf","date_updated":"2020-07-14T12:45:17Z","date_created":"2018-12-12T10:17:23Z","access_level":"open_access"}],"citation":{"ama":"Bollenbach MT. Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution. <i>Current Opinion in Microbiology</i>. 2015;27:1-9. doi:<a href=\"https://doi.org/10.1016/j.mib.2015.05.008\">10.1016/j.mib.2015.05.008</a>","chicago":"Bollenbach, Mark Tobias. “Antimicrobial Interactions: Mechanisms and Implications for Drug Discovery and Resistance Evolution.” <i>Current Opinion in Microbiology</i>. Elsevier, 2015. <a href=\"https://doi.org/10.1016/j.mib.2015.05.008\">https://doi.org/10.1016/j.mib.2015.05.008</a>.","apa":"Bollenbach, M. T. (2015). Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution. <i>Current Opinion in Microbiology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.mib.2015.05.008\">https://doi.org/10.1016/j.mib.2015.05.008</a>","short":"M.T. Bollenbach, Current Opinion in Microbiology 27 (2015) 1–9.","ista":"Bollenbach MT. 2015. Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution. Current Opinion in Microbiology. 27, 1–9.","ieee":"M. T. Bollenbach, “Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution,” <i>Current Opinion in Microbiology</i>, vol. 27. Elsevier, pp. 1–9, 2015.","mla":"Bollenbach, Mark Tobias. “Antimicrobial Interactions: Mechanisms and Implications for Drug Discovery and Resistance Evolution.” <i>Current Opinion in Microbiology</i>, vol. 27, Elsevier, 2015, pp. 1–9, doi:<a href=\"https://doi.org/10.1016/j.mib.2015.05.008\">10.1016/j.mib.2015.05.008</a>."},"publication":"Current Opinion in Microbiology","page":"1 - 9","volume":27,"_id":"1810","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","date_updated":"2025-09-23T07:55:38Z","oa":1,"title":"Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution","date_published":"2015-06-01T00:00:00Z","status":"public","pubrep_id":"493","publication_status":"published","type":"journal_article","file_date_updated":"2020-07-14T12:45:17Z","month":"06","article_processing_charge":"No","year":"2015","publisher":"Elsevier","project":[{"_id":"25E9AF9E-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Revealing the mechanisms underlying drug interactions","grant_number":"P27201-B22"},{"grant_number":"303507","_id":"25E83C2C-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Optimality principles in responses to antibiotics"},{"name":"Revealing the fundamental limits of cell growth","_id":"25EB3A80-B435-11E9-9278-68D0E5697425","grant_number":"RGP0042/2013"}],"abstract":[{"lang":"eng","text":"Combining antibiotics is a promising strategy for increasing treatment efficacy and for controlling resistance evolution. When drugs are combined, their effects on cells may be amplified or weakened, that is the drugs may show synergistic or antagonistic interactions. Recent work revealed the underlying mechanisms of such drug interactions by elucidating the drugs'; joint effects on cell physiology. Moreover, new treatment strategies that use drug combinations to exploit evolutionary tradeoffs were shown to affect the rate of resistance evolution in predictable ways. High throughput studies have further identified drug candidates based on their interactions with established antibiotics and general principles that enable the prediction of drug interactions were suggested. Overall, the conceptual and technical foundation for the rational design of potent drug combinations is rapidly developing."}],"author":[{"first_name":"Mark Tobias","orcid":"0000-0003-4398-476X","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","full_name":"Bollenbach, Mark Tobias","last_name":"Bollenbach"}],"department":[{"_id":"ToBo"}],"corr_author":"1","fulldoi":"https://doi.org/10.1016/j.mib.2015.05.008","ec_funded":1,"publist_id":"5298","day":"01","has_accepted_license":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version"},{"type":"journal_article","file_date_updated":"2020-07-14T12:45:17Z","date_published":"2015-04-01T00:00:00Z","status":"public","pubrep_id":"446","publication_status":"published","article_processing_charge":"No","year":"2015","publisher":"IOP Publishing","abstract":[{"text":"We investigate the occurrence of rotons in a quadrupolar Bose–Einstein condensate confined to two dimensions. Depending on the particle density, the ratio of the contact and quadrupole–quadrupole interactions, and the alignment of the quadrupole moments with respect to the confinement plane, the dispersion relation features two or four point-like roton minima or one ring-shaped minimum. We map out the entire parameter space of the roton behavior and identify the instability regions. We propose to observe the exotic rotons by monitoring the characteristic density wave dynamics resulting from a short local perturbation, and discuss the possibilities to detect the predicted effects in state-of-the-art experiments with ultracold homonuclear molecules.\r\n","lang":"eng"}],"month":"04","fulldoi":"https://doi.org/10.1088/1367-2630/17/4/045005","department":[{"_id":"MiLe"}],"author":[{"first_name":"Martin","full_name":"Lahrz, Martin","last_name":"Lahrz"},{"orcid":"0000-0002-6990-7802","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko","full_name":"Lemeshko, Mikhail"},{"last_name":"Mathey","full_name":"Mathey, Ludwig","first_name":"Ludwig"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","publist_id":"5294","day":"01","has_accepted_license":"1","doi":"10.1088/1367-2630/17/4/045005","language":[{"iso":"eng"}],"intvolume":"        17","isi":1,"ddc":["530"],"article_number":"045005","issue":"4","external_id":{"isi":["000354022400001"]},"quality_controlled":"1","date_created":"2018-12-11T11:54:09Z","volume":17,"_id":"1812","file":[{"access_level":"open_access","date_created":"2018-12-12T10:15:59Z","date_updated":"2020-07-14T12:45:17Z","relation":"main_file","file_name":"IST-2016-446-v1+1_document.pdf","content_type":"application/pdf","file_id":"5184","file_size":1900925,"creator":"system","checksum":"551f751a75b39b89a1db2f7f498f9a49"}],"citation":{"ista":"Lahrz M, Lemeshko M, Mathey L. 2015. Exotic roton excitations in quadrupolar Bose–Einstein condensates . New Journal of Physics. 17(4), 045005.","short":"M. Lahrz, M. Lemeshko, L. Mathey, New Journal of Physics 17 (2015).","mla":"Lahrz, Martin, et al. “Exotic Roton Excitations in Quadrupolar Bose–Einstein Condensates .” <i>New Journal of Physics</i>, vol. 17, no. 4, 045005, IOP Publishing, 2015, doi:<a href=\"https://doi.org/10.1088/1367-2630/17/4/045005\">10.1088/1367-2630/17/4/045005</a>.","ieee":"M. Lahrz, M. Lemeshko, and L. Mathey, “Exotic roton excitations in quadrupolar Bose–Einstein condensates ,” <i>New Journal of Physics</i>, vol. 17, no. 4. IOP Publishing, 2015.","chicago":"Lahrz, Martin, Mikhail Lemeshko, and Ludwig Mathey. “Exotic Roton Excitations in Quadrupolar Bose–Einstein Condensates .” <i>New Journal of Physics</i>. IOP Publishing, 2015. <a href=\"https://doi.org/10.1088/1367-2630/17/4/045005\">https://doi.org/10.1088/1367-2630/17/4/045005</a>.","ama":"Lahrz M, Lemeshko M, Mathey L. Exotic roton excitations in quadrupolar Bose–Einstein condensates . <i>New Journal of Physics</i>. 2015;17(4). doi:<a href=\"https://doi.org/10.1088/1367-2630/17/4/045005\">10.1088/1367-2630/17/4/045005</a>","apa":"Lahrz, M., Lemeshko, M., &#38; Mathey, L. (2015). Exotic roton excitations in quadrupolar Bose–Einstein condensates . <i>New Journal of Physics</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1367-2630/17/4/045005\">https://doi.org/10.1088/1367-2630/17/4/045005</a>"},"publication":"New Journal of Physics","scopus_import":"1","date_updated":"2025-09-23T08:45:19Z","oa":1,"title":"Exotic roton excitations in quadrupolar Bose–Einstein condensates ","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"volume":114,"_id":"1813","publication":"Physical Review Letters","arxiv":1,"citation":{"ama":"Schmidt R, Lemeshko M. Rotation of quantum impurities in the presence of a many-body environment. <i>Physical Review Letters</i>. 2015;114(20). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.114.203001\">10.1103/PhysRevLett.114.203001</a>","chicago":"Schmidt, Richard, and Mikhail Lemeshko. “Rotation of Quantum Impurities in the Presence of a Many-Body Environment.” <i>Physical Review Letters</i>. American Physical Society, 2015. <a href=\"https://doi.org/10.1103/PhysRevLett.114.203001\">https://doi.org/10.1103/PhysRevLett.114.203001</a>.","apa":"Schmidt, R., &#38; Lemeshko, M. (2015). Rotation of quantum impurities in the presence of a many-body environment. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.114.203001\">https://doi.org/10.1103/PhysRevLett.114.203001</a>","short":"R. Schmidt, M. Lemeshko, Physical Review Letters 114 (2015).","ista":"Schmidt R, Lemeshko M. 2015. Rotation of quantum impurities in the presence of a many-body environment. Physical Review Letters. 114(20), 203001.","ieee":"R. Schmidt and M. Lemeshko, “Rotation of quantum impurities in the presence of a many-body environment,” <i>Physical Review Letters</i>, vol. 114, no. 20. American Physical Society, 2015.","mla":"Schmidt, Richard, and Mikhail Lemeshko. “Rotation of Quantum Impurities in the Presence of a Many-Body Environment.” <i>Physical Review Letters</i>, vol. 114, no. 20, 203001, American Physical Society, 2015, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.114.203001\">10.1103/PhysRevLett.114.203001</a>."},"title":"Rotation of quantum impurities in the presence of a many-body environment","oa":1,"date_updated":"2025-09-23T10:40:28Z","scopus_import":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1502.03447"}],"language":[{"iso":"eng"}],"doi":"10.1103/PhysRevLett.114.203001","isi":1,"intvolume":"       114","external_id":{"isi":["000354969900003"],"arxiv":["1502.03447"]},"issue":"20","article_number":"203001","date_created":"2018-12-11T11:54:09Z","quality_controlled":"1","fulldoi":"https://doi.org/10.1103/PhysRevLett.114.203001","corr_author":"1","department":[{"_id":"MiLe"}],"author":[{"full_name":"Schmidt, Richard","last_name":"Schmidt","first_name":"Richard"},{"orcid":"0000-0002-6990-7802","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Lemeshko, Mikhail","last_name":"Lemeshko"}],"oa_version":"Preprint","day":"18","publist_id":"5293","type":"journal_article","publication_status":"published","status":"public","date_published":"2015-05-18T00:00:00Z","abstract":[{"text":"We develop a microscopic theory describing a quantum impurity whose rotational degree of freedom is coupled to a many-particle bath. We approach the problem by introducing the concept of an “angulon”—a quantum rotor dressed by a quantum field—and reveal its quasiparticle properties using a combination of variational and diagrammatic techniques. Our theory predicts renormalization of the impurity rotational structure, such as that observed in experiments with molecules in superfluid helium droplets, in terms of a rotational Lamb shift induced by the many-particle environment. Furthermore, we discover a rich many-body-induced fine structure, emerging in rotational spectra due to a redistribution of angular momentum within the quantum many-body system.","lang":"eng"}],"publisher":"American Physical Society","article_processing_charge":"No","year":"2015","month":"05"},{"intvolume":"        34","isi":1,"ddc":["000"],"doi":"10.1145/2714572","language":[{"iso":"eng"}],"quality_controlled":"1","date_created":"2018-12-11T11:54:09Z","issue":"3","article_number":"27","external_id":{"isi":["000354800700004"]},"file":[{"creator":"system","checksum":"67c9f4fa370def68cdf31299e48bc91f","date_updated":"2020-07-14T12:45:17Z","file_id":"4933","file_size":23712153,"relation":"main_file","content_type":"application/pdf","file_name":"IST-2016-575-v1+1_wavefront_preprint.pdf","date_created":"2018-12-12T10:12:15Z","access_level":"open_access"}],"citation":{"apa":"Jeschke, S., &#38; Wojtan, C. (2015). Water wave animation via wavefront parameter interpolation. <i>ACM Transactions on Graphics</i>. ACM. <a href=\"https://doi.org/10.1145/2714572\">https://doi.org/10.1145/2714572</a>","chicago":"Jeschke, Stefan, and Chris Wojtan. “Water Wave Animation via Wavefront Parameter Interpolation.” <i>ACM Transactions on Graphics</i>. ACM, 2015. <a href=\"https://doi.org/10.1145/2714572\">https://doi.org/10.1145/2714572</a>.","ama":"Jeschke S, Wojtan C. Water wave animation via wavefront parameter interpolation. <i>ACM Transactions on Graphics</i>. 2015;34(3). doi:<a href=\"https://doi.org/10.1145/2714572\">10.1145/2714572</a>","ieee":"S. Jeschke and C. Wojtan, “Water wave animation via wavefront parameter interpolation,” <i>ACM Transactions on Graphics</i>, vol. 34, no. 3. ACM, 2015.","mla":"Jeschke, Stefan, and Chris Wojtan. “Water Wave Animation via Wavefront Parameter Interpolation.” <i>ACM Transactions on Graphics</i>, vol. 34, no. 3, 27, ACM, 2015, doi:<a href=\"https://doi.org/10.1145/2714572\">10.1145/2714572</a>.","ista":"Jeschke S, Wojtan C. 2015. Water wave animation via wavefront parameter interpolation. ACM Transactions on Graphics. 34(3), 27.","short":"S. Jeschke, C. Wojtan, ACM Transactions on Graphics 34 (2015)."},"publication":"ACM Transactions on Graphics","volume":34,"_id":"1814","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","scopus_import":"1","date_updated":"2025-09-29T11:05:55Z","title":"Water wave animation via wavefront parameter interpolation","oa":1,"date_published":"2015-04-01T00:00:00Z","status":"public","pubrep_id":"575","publication_status":"published","type":"journal_article","file_date_updated":"2020-07-14T12:45:17Z","month":"04","article_processing_charge":"No","year":"2015","publisher":"ACM","project":[{"grant_number":"P 24352-N23","_id":"25357BD2-B435-11E9-9278-68D0E5697425","name":"Deep Pictures: Creating Visual and Haptic Vector Images","call_identifier":"FWF"},{"_id":"2533E772-B435-11E9-9278-68D0E5697425","name":"Big Splash: Efficient Simulation of Natural Phenomena at Extremely Large Scales","call_identifier":"H2020","grant_number":"638176"}],"abstract":[{"text":"We present an efficient wavefront tracking algorithm for animating bodies of water that interact with their environment. Our contributions include: a novel wavefront tracking technique that enables dispersion, refraction, reflection, and diffraction in the same simulation; a unique multivalued function interpolation method that enables our simulations to elegantly sidestep the Nyquist limit; a dispersion approximation for efficiently amplifying the number of simulated waves by several orders of magnitude; and additional extensions that allow for time-dependent effects and interactive artistic editing of the resulting animation. Our contributions combine to give us multitudes more wave details than similar algorithms, while maintaining high frame rates and allowing close camera zooms.","lang":"eng"}],"author":[{"full_name":"Jeschke, Stefan","last_name":"Jeschke","first_name":"Stefan","id":"44D6411A-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0001-6646-5546","first_name":"Christopher J","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","full_name":"Wojtan, Christopher J","last_name":"Wojtan"}],"department":[{"_id":"ChWo"}],"corr_author":"1","fulldoi":"https://doi.org/10.1145/2714572","ec_funded":1,"publist_id":"5292","day":"01","has_accepted_license":"1","oa_version":"Submitted Version"},{"isi":1,"intvolume":"       521","language":[{"iso":"eng"}],"doi":"10.1038/nature14215","date_created":"2018-12-11T11:54:10Z","quality_controlled":"1","external_id":{"isi":["000354377800058"],"pmid":["25778702"]},"pmid":1,"issue":"7551","publication":"Nature","citation":{"ama":"Porazinski S, Wang H, Asaoka Y, et al. YAP is essential for tissue tension to ensure vertebrate 3D body shape. <i>Nature</i>. 2015;521(7551):217-221. doi:<a href=\"https://doi.org/10.1038/nature14215\">10.1038/nature14215</a>","chicago":"Porazinski, Sean, Huijia Wang, Yoichi Asaoka, Martin Behrndt, Tatsuo Miyamoto, Hitoshi Morita, Shoji Hata, et al. “YAP Is Essential for Tissue Tension to Ensure Vertebrate 3D Body Shape.” <i>Nature</i>. Nature Publishing Group, 2015. <a href=\"https://doi.org/10.1038/nature14215\">https://doi.org/10.1038/nature14215</a>.","apa":"Porazinski, S., Wang, H., Asaoka, Y., Behrndt, M., Miyamoto, T., Morita, H., … Furutani Seiki, M. (2015). YAP is essential for tissue tension to ensure vertebrate 3D body shape. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature14215\">https://doi.org/10.1038/nature14215</a>","short":"S. Porazinski, H. Wang, Y. Asaoka, M. Behrndt, T. Miyamoto, H. Morita, S. Hata, T. Sasaki, G. Krens, Y. Osada, S. Asaka, A. Momoi, S. Linton, J. Miesfeld, B. Link, T. Senga, A. Castillo Morales, A. Urrutia, N. Shimizu, H. Nagase, S. Matsuura, S. Bagby, H. Kondoh, H. Nishina, C.-P.J. Heisenberg, M. Furutani Seiki, Nature 521 (2015) 217–221.","ista":"Porazinski S, Wang H, Asaoka Y, Behrndt M, Miyamoto T, Morita H, Hata S, Sasaki T, Krens G, Osada Y, Asaka S, Momoi A, Linton S, Miesfeld J, Link B, Senga T, Castillo Morales A, Urrutia A, Shimizu N, Nagase H, Matsuura S, Bagby S, Kondoh H, Nishina H, Heisenberg C-PJ, Furutani Seiki M. 2015. YAP is essential for tissue tension to ensure vertebrate 3D body shape. Nature. 521(7551), 217–221.","mla":"Porazinski, Sean, et al. “YAP Is Essential for Tissue Tension to Ensure Vertebrate 3D Body Shape.” <i>Nature</i>, vol. 521, no. 7551, Nature Publishing Group, 2015, pp. 217–21, doi:<a href=\"https://doi.org/10.1038/nature14215\">10.1038/nature14215</a>.","ieee":"S. Porazinski <i>et al.</i>, “YAP is essential for tissue tension to ensure vertebrate 3D body shape,” <i>Nature</i>, vol. 521, no. 7551. Nature Publishing Group, pp. 217–221, 2015."},"_id":"1817","volume":521,"page":"217 - 221","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4720436/","open_access":"1"}],"title":"YAP is essential for tissue tension to ensure vertebrate 3D body shape","oa":1,"date_updated":"2025-09-29T11:07:11Z","scopus_import":"1","publication_status":"published","date_published":"2015-03-16T00:00:00Z","status":"public","type":"journal_article","month":"03","abstract":[{"text":"Vertebrates have a unique 3D body shape in which correct tissue and organ shape and alignment are essential for function. For example, vision requires the lens to be centred in the eye cup which must in turn be correctly positioned in the head. Tissue morphogenesis depends on force generation, force transmission through the tissue, and response of tissues and extracellular matrix to force. Although a century ago D'Arcy Thompson postulated that terrestrial animal body shapes are conditioned by gravity, there has been no animal model directly demonstrating how the aforementioned mechano-morphogenetic processes are coordinated to generate a body shape that withstands gravity. Here we report a unique medaka fish (Oryzias latipes) mutant, hirame (hir), which is sensitive to deformation by gravity. hir embryos display a markedly flattened body caused by mutation of YAP, a nuclear executor of Hippo signalling that regulates organ size. We show that actomyosin-mediated tissue tension is reduced in hir embryos, leading to tissue flattening and tissue misalignment, both of which contribute to body flattening. By analysing YAP function in 3D spheroids of human cells, we identify the Rho GTPase activating protein ARHGAP18 as an effector of YAP in controlling tissue tension. Together, these findings reveal a previously unrecognised function of YAP in regulating tissue shape and alignment required for proper 3D body shape. Understanding this morphogenetic function of YAP could facilitate the use of embryonic stem cells to generate complex organs requiring correct alignment of multiple tissues. ","lang":"eng"}],"publisher":"Nature Publishing Group","article_processing_charge":"No","year":"2015","department":[{"_id":"CaHe"}],"author":[{"full_name":"Porazinski, Sean","last_name":"Porazinski","first_name":"Sean"},{"first_name":"Huijia","last_name":"Wang","full_name":"Wang, Huijia"},{"last_name":"Asaoka","full_name":"Asaoka, Yoichi","first_name":"Yoichi"},{"first_name":"Martin","id":"3ECECA3A-F248-11E8-B48F-1D18A9856A87","last_name":"Behrndt","full_name":"Behrndt, Martin"},{"full_name":"Miyamoto, Tatsuo","last_name":"Miyamoto","first_name":"Tatsuo"},{"last_name":"Morita","full_name":"Morita, Hitoshi","first_name":"Hitoshi","id":"4C6E54C6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Shoji","last_name":"Hata","full_name":"Hata, Shoji"},{"first_name":"Takashi","last_name":"Sasaki","full_name":"Sasaki, Takashi"},{"full_name":"Krens, Gabriel","last_name":"Krens","id":"2B819732-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4761-5996","first_name":"Gabriel"},{"first_name":"Yumi","full_name":"Osada, Yumi","last_name":"Osada"},{"last_name":"Asaka","full_name":"Asaka, Satoshi","first_name":"Satoshi"},{"first_name":"Akihiro","full_name":"Momoi, Akihiro","last_name":"Momoi"},{"last_name":"Linton","full_name":"Linton, Sarah","first_name":"Sarah"},{"first_name":"Joel","last_name":"Miesfeld","full_name":"Miesfeld, Joel"},{"first_name":"Brian","last_name":"Link","full_name":"Link, Brian"},{"last_name":"Senga","full_name":"Senga, Takeshi","first_name":"Takeshi"},{"full_name":"Castillo Morales, Atahualpa","last_name":"Castillo Morales","first_name":"Atahualpa"},{"first_name":"Araxi","last_name":"Urrutia","full_name":"Urrutia, Araxi"},{"last_name":"Shimizu","full_name":"Shimizu, Nobuyoshi","first_name":"Nobuyoshi"},{"first_name":"Hideaki","full_name":"Nagase, Hideaki","last_name":"Nagase"},{"full_name":"Matsuura, Shinya","last_name":"Matsuura","first_name":"Shinya"},{"last_name":"Bagby","full_name":"Bagby, Stefan","first_name":"Stefan"},{"full_name":"Kondoh, Hisato","last_name":"Kondoh","first_name":"Hisato"},{"full_name":"Nishina, Hiroshi","last_name":"Nishina","first_name":"Hiroshi"},{"full_name":"Heisenberg, Carl-Philipp J","last_name":"Heisenberg","first_name":"Carl-Philipp J","orcid":"0000-0002-0912-4566","id":"39427864-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Furutani Seiki","full_name":"Furutani Seiki, Makoto","first_name":"Makoto"}],"fulldoi":"https://doi.org/10.1038/nature14215","corr_author":"1","day":"16","publist_id":"5289","oa_version":"Submitted Version"}]