[{"article_processing_charge":"Yes (via OA deal)","day":"13","file_date_updated":"2025-08-04T09:10:55Z","project":[{"name":"The design and evaluation of modern fully dynamic data structures","_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","call_identifier":"H2020","grant_number":"101019564"},{"grant_number":"I05982","_id":"bda196b2-d553-11ed-ba76-8e8ee6c21103","name":"Static and Dynamic Hierarchical Graph Decompositions"},{"grant_number":"P33775","_id":"bd9e3a2e-d553-11ed-ba76-8aa684ce17fe","name":"Fast Algorithms for a Reactive Network Layer"}],"file":[{"creator":"dernst","date_updated":"2025-08-04T09:10:55Z","file_size":2200347,"content_type":"application/pdf","date_created":"2025-08-04T09:10:55Z","success":1,"file_id":"20115","file_name":"2025_PODC_ElHayek.pdf","checksum":"52976d226f3f691aa519d71c1c718fa5","access_level":"open_access","relation":"main_file"}],"oa":1,"oa_version":"Published Version","OA_type":"hybrid","ddc":["000"],"doi":"10.1145/3732772.3733505","publication_status":"published","status":"public","date_updated":"2025-10-16T13:08:45Z","ec_funded":1,"month":"06","publication":"Proceedings of the ACM Symposium on Principles of Distributed Computing","has_accepted_license":"1","external_id":{"isi":["001525534800066"],"arxiv":["2505.02765"]},"citation":{"short":"A. El-Hayek, R. Elsässer, S. Schmid, in:, Proceedings of the ACM Symposium on Principles of Distributed Computing, Association for Computing Machinery, 2025.","mla":"El-Hayek, Antoine, et al. “An Almost Tight Lower Bound for Plurality Consensus with Undecided State Dynamics in the Population Protocol Model.” <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Association for Computing Machinery, 2025, doi:<a href=\"https://doi.org/10.1145/3732772.3733505\">10.1145/3732772.3733505</a>.","ista":"El-Hayek A, Elsässer R, Schmid S. 2025. An almost tight lower bound for plurality consensus with undecided state dynamics in the population protocol model. Proceedings of the ACM Symposium on Principles of Distributed Computing. PODC: Symposium on Principles of Distributed Computing.","chicago":"El-Hayek, Antoine, Robert Elsässer, and Stefan Schmid. “An Almost Tight Lower Bound for Plurality Consensus with Undecided State Dynamics in the Population Protocol Model.” In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1145/3732772.3733505\">https://doi.org/10.1145/3732772.3733505</a>.","apa":"El-Hayek, A., Elsässer, R., &#38; Schmid, S. (2025). An almost tight lower bound for plurality consensus with undecided state dynamics in the population protocol model. In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>. Huatulco, Mexico: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3732772.3733505\">https://doi.org/10.1145/3732772.3733505</a>","ama":"El-Hayek A, Elsässer R, Schmid S. An almost tight lower bound for plurality consensus with undecided state dynamics in the population protocol model. In: <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>. Association for Computing Machinery; 2025. doi:<a href=\"https://doi.org/10.1145/3732772.3733505\">10.1145/3732772.3733505</a>","ieee":"A. El-Hayek, R. Elsässer, and S. Schmid, “An almost tight lower bound for plurality consensus with undecided state dynamics in the population protocol model,” in <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Huatulco, Mexico, 2025."},"year":"2025","quality_controlled":"1","abstract":[{"text":"We revisit the majority problem in the population protocol communication model, as first studied by Angluin et al. (Distributed Computing 2008). We consider a more general version of this problem known as plurality consensus, which has already been studied intensively in the literature. In this problem, each node in a system of n nodes, has initially one of k different opinions, and they need to agree on the (relative) majority opinion. In particular, we consider the important and intensively studied model of Undecided State Dynamics.\r\nOur main contribution is an almost tight lower bound on the stabilization time: we prove that there exists an initial configuration, even with bias \\Delta = \\omega(\\sqrt{n\\log n}), where stabilization requires \\Omega(kn\\log \\frac {\\sqrt n} {k \\log n}) interactions, or equivalently, \\Omega(k\\log \\frac {\\sqrt n} {k \\log n}) parallel time for any k = o\\left(\\frac {\\sqrt n}{\\log n}\\right). This bound is tight for any k \\le n^{\\frac 1 2 - \\epsilon}, where \\epsilon >0 can be any small constant, as Amir et al.~(PODC'23) gave a O(k\\log n) parallel time upper bound for k = O\\left(\\frac {\\sqrt n} {\\log ^2 n}\\right).","lang":"eng"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"department":[{"_id":"MoHe"}],"author":[{"id":"888a098e-fcac-11ee-aff7-d347be57b725","orcid":"0000-0003-4268-7368","first_name":"Antoine","last_name":"El-Hayek","full_name":"El-Hayek, Antoine"},{"full_name":"Elsässer, Robert","last_name":"Elsässer","first_name":"Robert"},{"full_name":"Schmid, Stefan","first_name":"Stefan","last_name":"Schmid"}],"title":"An almost tight lower bound for plurality consensus with undecided state dynamics in the population protocol model","publication_identifier":{"isbn":[" 9798400718854"]},"arxiv":1,"corr_author":"1","type":"conference","date_published":"2025-06-13T00:00:00Z","_id":"20051","OA_place":"publisher","date_created":"2025-07-21T08:16:15Z","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (MoDynStruct, No. 101019564) and the Austrian Science Fund (FWF) grant DOI 10.55776/I5862,grant DOI 10.55776/I5982, and grant DOI 10.55776/P33775 with\r\nadditional funding from the netidee SCIENCE Stiftung, 2020–2024\r\nand the German Research Foundation (DFG), grant 470029389\r\n(FlexNets).","language":[{"iso":"eng"}],"conference":{"end_date":"2025-06-20","start_date":"2025-06-16","name":"PODC: Symposium on Principles of Distributed Computing","location":"Huatulco, Mexico"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Association for Computing Machinery","isi":1},{"external_id":{"isi":["001525534800069"]},"year":"2025","citation":{"ista":"Breitkopf T-L, Dallot J, El-Hayek A, Schmid S. 2025. Brief announcement: Minimizing energy solves relative majority with a cubic number of states in population protocols. Proceedings of the ACM Symposium on Principles of Distributed Computing. PODC: Symposium on Principles of Distributed Computing, 549–552.","mla":"Breitkopf, Tom-Lukas, et al. “Brief Announcement: Minimizing Energy Solves Relative Majority with a Cubic Number of States in Population Protocols.” <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Association for Computing Machinery, 2025, pp. 549–52, doi:<a href=\"https://doi.org/10.1145/3732772.3733512\">10.1145/3732772.3733512</a>.","short":"T.-L. Breitkopf, J. Dallot, A. El-Hayek, S. Schmid, in:, Proceedings of the ACM Symposium on Principles of Distributed Computing, Association for Computing Machinery, 2025, pp. 549–552.","chicago":"Breitkopf, Tom-Lukas, Julien Dallot, Antoine El-Hayek, and Stefan Schmid. “Brief Announcement: Minimizing Energy Solves Relative Majority with a Cubic Number of States in Population Protocols.” In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, 549–52. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1145/3732772.3733512\">https://doi.org/10.1145/3732772.3733512</a>.","ama":"Breitkopf T-L, Dallot J, El-Hayek A, Schmid S. Brief announcement: Minimizing energy solves relative majority with a cubic number of states in population protocols. In: <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>. Association for Computing Machinery; 2025:549-552. doi:<a href=\"https://doi.org/10.1145/3732772.3733512\">10.1145/3732772.3733512</a>","apa":"Breitkopf, T.-L., Dallot, J., El-Hayek, A., &#38; Schmid, S. (2025). Brief announcement: Minimizing energy solves relative majority with a cubic number of states in population protocols. In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i> (pp. 549–552). Huatulco, Mexico: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3732772.3733512\">https://doi.org/10.1145/3732772.3733512</a>","ieee":"T.-L. Breitkopf, J. Dallot, A. El-Hayek, and S. Schmid, “Brief announcement: Minimizing energy solves relative majority with a cubic number of states in population protocols,” in <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Huatulco, Mexico, 2025, pp. 549–552."},"has_accepted_license":"1","publication":"Proceedings of the ACM Symposium on Principles of Distributed Computing","month":"06","ec_funded":1,"date_updated":"2026-02-16T11:46:37Z","ddc":["000"],"doi":"10.1145/3732772.3733512","status":"public","publication_status":"published","oa":1,"oa_version":"Published Version","OA_type":"hybrid","article_processing_charge":"No","day":"13","project":[{"grant_number":"101019564","_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","call_identifier":"H2020","name":"The design and evaluation of modern fully dynamic data structures"},{"_id":"bda196b2-d553-11ed-ba76-8e8ee6c21103","name":"Static and Dynamic Hierarchical Graph Decompositions","grant_number":"I05982"},{"_id":"bd9e3a2e-d553-11ed-ba76-8aa684ce17fe","name":"Fast Algorithms for a Reactive Network Layer","grant_number":"P33775"}],"file_date_updated":"2025-08-05T07:32:01Z","file":[{"date_updated":"2025-08-05T07:32:01Z","file_size":549706,"creator":"dernst","content_type":"application/pdf","success":1,"file_name":"2025_PODC_Breitkopf.pdf","file_id":"20123","date_created":"2025-08-05T07:32:01Z","relation":"main_file","checksum":"e99679ffb28877b7cea4d54860302790","access_level":"open_access"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Association for Computing Machinery","isi":1,"conference":{"end_date":"2025-06-20","name":"PODC: Symposium on Principles of Distributed Computing","location":"Huatulco, Mexico","start_date":"2025-06-16"},"OA_place":"publisher","date_created":"2025-07-21T08:17:04Z","acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (MoDynStruct, No. 101019564) and the Austrian Science Fund (FWF) grant DOI 10.55776/I5982, and grant DOI 10.55776/P33775 with additional funding from the netidee SCIENCE Stiftung, 2020–2024 and the German Research Foundation (DFG), grant 470029389 (FlexNets). ","language":[{"iso":"eng"}],"date_published":"2025-06-13T00:00:00Z","page":"549-552","_id":"20052","publication_identifier":{"isbn":["9798400718854"]},"corr_author":"1","type":"conference","title":"Brief announcement: Minimizing energy solves relative majority with a cubic number of states in population protocols","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"department":[{"_id":"MoHe"}],"author":[{"full_name":"Breitkopf, Tom-Lukas","first_name":"Tom-Lukas","last_name":"Breitkopf"},{"first_name":"Julien","last_name":"Dallot","full_name":"Dallot, Julien"},{"last_name":"El-Hayek","id":"888a098e-fcac-11ee-aff7-d347be57b725","first_name":"Antoine","orcid":"0000-0003-4268-7368","full_name":"El-Hayek, Antoine"},{"full_name":"Schmid, Stefan","last_name":"Schmid","first_name":"Stefan"}],"quality_controlled":"1","abstract":[{"text":"This paper revisits a fundamental distributed computing problem in the population protocol model. Provided n agents each starting with an input color in [k], the relative majority problem asks to find the predominant color. In the population protocol model, at each time step, a scheduler selects two agents that first learn each other's states and then update their states based on what they learned.\r\nWe present the Circles protocol that solves the relative majority problem with k3 states. It is always-correct under weakly fair scheduling. Not only does it improve upon the best known upper bound of O(k7), but it also shows a strikingly simpler design inspired by energy minimization in chemical settings.","lang":"eng"}]},{"ec_funded":1,"publication":"Proceedings of the ACM Symposium on Principles of Distributed Computing","month":"06","has_accepted_license":"1","external_id":{"isi":["001525534800030"]},"year":"2025","citation":{"ieee":"K. Chatterjee, S. Gilbert, S. Schmid, J. Svoboda, and M. X. Yeo, “When is liquid democracy possible?: On the manipulation of variance,” in <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Huatulco, Mexico, 2025, pp. 241–251.","ama":"Chatterjee K, Gilbert S, Schmid S, Svoboda J, Yeo MX. When is liquid democracy possible?: On the manipulation of variance. In: <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>. Association for Computing Machinery; 2025:241-251. doi:<a href=\"https://doi.org/10.1145/3732772.3733544\">10.1145/3732772.3733544</a>","apa":"Chatterjee, K., Gilbert, S., Schmid, S., Svoboda, J., &#38; Yeo, M. X. (2025). When is liquid democracy possible?: On the manipulation of variance. In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i> (pp. 241–251). Huatulco, Mexico: Association for Computing Machinery. <a href=\"https://doi.org/10.1145/3732772.3733544\">https://doi.org/10.1145/3732772.3733544</a>","short":"K. Chatterjee, S. Gilbert, S. Schmid, J. Svoboda, M.X. Yeo, in:, Proceedings of the ACM Symposium on Principles of Distributed Computing, Association for Computing Machinery, 2025, pp. 241–251.","mla":"Chatterjee, Krishnendu, et al. “When Is Liquid Democracy Possible?: On the Manipulation of Variance.” <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, Association for Computing Machinery, 2025, pp. 241–51, doi:<a href=\"https://doi.org/10.1145/3732772.3733544\">10.1145/3732772.3733544</a>.","ista":"Chatterjee K, Gilbert S, Schmid S, Svoboda J, Yeo MX. 2025. When is liquid democracy possible?: On the manipulation of variance. Proceedings of the ACM Symposium on Principles of Distributed Computing. PODC: Symposium on Principles of Distributed Computing, 241–251.","chicago":"Chatterjee, Krishnendu, Seth Gilbert, Stefan Schmid, Jakub Svoboda, and Michelle X Yeo. “When Is Liquid Democracy Possible?: On the Manipulation of Variance.” In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>, 241–51. Association for Computing Machinery, 2025. <a href=\"https://doi.org/10.1145/3732772.3733544\">https://doi.org/10.1145/3732772.3733544</a>."},"article_processing_charge":"No","day":"13","project":[{"call_identifier":"H2020","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications","grant_number":"863818"}],"file":[{"content_type":"application/pdf","date_updated":"2025-08-05T07:15:31Z","file_size":783297,"creator":"dernst","relation":"main_file","checksum":"cd628fe54d96e9fc6cc789bb8145422b","access_level":"open_access","success":1,"file_id":"20122","file_name":"2025_PODC_Chatterjee.pdf","date_created":"2025-08-05T07:15:31Z"}],"file_date_updated":"2025-08-05T07:15:31Z","oa":1,"oa_version":"Published Version","OA_type":"hybrid","ddc":["000"],"doi":"10.1145/3732772.3733544","publication_status":"published","status":"public","date_updated":"2026-02-16T11:46:51Z","date_published":"2025-06-13T00:00:00Z","page":"241-251","_id":"20053","date_created":"2025-07-21T08:18:26Z","OA_place":"publisher","acknowledgement":"This work was partially supported by MOE-T2EP20122-0014 (DataDriven Distributed Algorithms), German Research Foundation (DFG) project ReNO (SPP 2378) from 2023-2027, ERC CoG 863818 (ForMSMArt) and Austrian Science Fund (FWF) 10.55776/COE12.","language":[{"iso":"eng"}],"conference":{"name":"PODC: Symposium on Principles of Distributed Computing","location":"Huatulco, Mexico","start_date":"2025-06-16","end_date":"2025-06-20"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Association for Computing Machinery","isi":1,"quality_controlled":"1","abstract":[{"lang":"eng","text":"Liquid democracy is a transitive vote delegation mechanism over voting graphs. It enables each voter to delegate their vote(s) to another better-informed voter, with the goal of collectively making a better decision. The question of whether liquid democracy outperforms direct voting has been previously studied in the context of local delegation mechanisms (where voters can only delegate to someone in their neighbourhood) and binary decision problems. It has previously been shown that it is impossible for local delegation mechanisms to outperform direct voting in general graphs. This raises the question: for which classes of graphs do local delegation mechanisms yield good results?\r\nIn this work, we analyse (1) properties of specific graphs and (2) properties of local delegation mechanisms on these graphs, determining where local delegation actually outperforms direct voting. We show that a critical graph property enabling liquid democracy is that the voting outcome of local delegation mechanisms preserves a sufficient amount of variance, thereby avoiding situations where delegation falls behind direct voting1. These insights allow us to prove our main results, namely that there exist local delegation mechanisms that perform no worse and in fact quantitatively better than direct voting in natural graph topologies like complete, random d-regular, and bounded degree graphs, lending a more nuanced perspective to previous impossibility results."}],"department":[{"_id":"KrCh"},{"_id":"KrPi"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"author":[{"full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee"},{"full_name":"Gilbert, Seth","first_name":"Seth","last_name":"Gilbert"},{"full_name":"Schmid, Stefan","last_name":"Schmid","first_name":"Stefan"},{"full_name":"Svoboda, Jakub","last_name":"Svoboda","orcid":"0000-0002-1419-3267","id":"130759D2-D7DD-11E9-87D2-DE0DE6697425","first_name":"Jakub"},{"orcid":"0009-0001-3676-4809","first_name":"Michelle X","id":"2D82B818-F248-11E8-B48F-1D18A9856A87","last_name":"Yeo","full_name":"Yeo, Michelle X"}],"title":"When is liquid democracy possible?: On the manipulation of variance","main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2025/745"}],"publication_identifier":{"isbn":["9798400718854"]},"type":"conference","corr_author":"1"},{"conference":{"location":"Sevilla, Spain","name":"MATSUS: Materials for Sustainable Development Conference","start_date":"2025-03-03","end_date":"2025-03-07"},"citation":{"ieee":"S. Horta, “Solid state diffusion in metal-semiconductors core-shell nanoparticle,” in <i>Proceedings of the MATSUS Spring 2025 Conference</i>, Sevilla, Spain, 2025.","chicago":"Horta, Sharona. “Solid State Diffusion in Metal-Semiconductors Core-Shell Nanoparticle.” In <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Fundació de la comunitat valenciana SCITO, 2025. <a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.220\">https://doi.org/10.29363/nanoge.matsusspring.2025.220</a>.","short":"S. Horta, in:, Proceedings of the MATSUS Spring 2025 Conference, Fundació de la comunitat valenciana SCITO, 2025.","mla":"Horta, Sharona. “Solid State Diffusion in Metal-Semiconductors Core-Shell Nanoparticle.” <i>Proceedings of the MATSUS Spring 2025 Conference</i>, 220, Fundació de la comunitat valenciana SCITO, 2025, doi:<a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.220\">10.29363/nanoge.matsusspring.2025.220</a>.","ista":"Horta S. 2025. Solid state diffusion in metal-semiconductors core-shell nanoparticle. Proceedings of the MATSUS Spring 2025 Conference. MATSUS: Materials for Sustainable Development Conference, 220.","ama":"Horta S. Solid state diffusion in metal-semiconductors core-shell nanoparticle. In: <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Fundació de la comunitat valenciana SCITO; 2025. doi:<a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.220\">10.29363/nanoge.matsusspring.2025.220</a>","apa":"Horta, S. (2025). Solid state diffusion in metal-semiconductors core-shell nanoparticle. In <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Sevilla, Spain: Fundació de la comunitat valenciana SCITO. <a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.220\">https://doi.org/10.29363/nanoge.matsusspring.2025.220</a>"},"year":"2025","publisher":"Fundació de la comunitat valenciana SCITO","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"20054","article_number":"220","date_published":"2025-03-03T00:00:00Z","language":[{"iso":"eng"}],"month":"03","publication":"Proceedings of the MATSUS Spring 2025 Conference","date_created":"2025-07-21T08:22:29Z","status":"public","publication_status":"published","doi":"10.29363/nanoge.matsusspring.2025.220","title":"Solid state diffusion in metal-semiconductors core-shell nanoparticle","date_updated":"2025-09-23T09:04:03Z","corr_author":"1","type":"conference_abstract","quality_controlled":"1","article_processing_charge":"No","day":"03","author":[{"full_name":"Horta, Sharona","first_name":"Sharona","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","last_name":"Horta"}],"oa_version":"None","department":[{"_id":"MaIb"}]},{"date_published":"2025-03-15T00:00:00Z","article_number":"173","_id":"20055","date_created":"2025-07-21T08:33:20Z","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"NMR"},{"_id":"LifeSc"}],"acknowledgement":"ISTA and the Werner Siemens Foundation financially supported this work. The Scientific Service Units (SSU) of ISTA supported this research through resources provided by the Electron Microscopy Facility (EMF), NMR Facility and the Lab Support Facility (LSF).","publication":"Proceedings of the MATSUS Spring 2025 Conference","language":[{"iso":"eng"}],"month":"03","conference":{"end_date":"2025-03-07","name":"MATSUS: Materials for Sustainable Development Conference","location":"Sevilla, Spain","start_date":"2025-03-03"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Fundació de la comunitat valenciana SCITO","year":"2025","citation":{"ieee":"S. Lee, D. Balazs, S. Horta, A. Rayaroth Puthiyaveettil, and M. Ibáñez, “Reaction precursor-mediated formation of stable supercrystals in colloidal nanocrystal synthesis: PbTe case,” in <i>Proceedings of the MATSUS Spring 2025 Conference</i>, Sevilla, Spain, 2025.","apa":"Lee, S., Balazs, D., Horta, S., Rayaroth Puthiyaveettil, A., &#38; Ibáñez, M. (2025). Reaction precursor-mediated formation of stable supercrystals in colloidal nanocrystal synthesis: PbTe case. In <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Sevilla, Spain: Fundació de la comunitat valenciana SCITO. <a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.173\">https://doi.org/10.29363/nanoge.matsusspring.2025.173</a>","ama":"Lee S, Balazs D, Horta S, Rayaroth Puthiyaveettil A, Ibáñez M. Reaction precursor-mediated formation of stable supercrystals in colloidal nanocrystal synthesis: PbTe case. In: <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Fundació de la comunitat valenciana SCITO; 2025. doi:<a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.173\">10.29363/nanoge.matsusspring.2025.173</a>","chicago":"Lee, Seungho, Daniel Balazs, Sharona Horta, Aiswarya Rayaroth Puthiyaveettil, and Maria Ibáñez. “Reaction Precursor-Mediated Formation of Stable Supercrystals in Colloidal Nanocrystal Synthesis: PbTe Case.” In <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Fundació de la comunitat valenciana SCITO, 2025. <a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.173\">https://doi.org/10.29363/nanoge.matsusspring.2025.173</a>.","mla":"Lee, Seungho, et al. “Reaction Precursor-Mediated Formation of Stable Supercrystals in Colloidal Nanocrystal Synthesis: PbTe Case.” <i>Proceedings of the MATSUS Spring 2025 Conference</i>, 173, Fundació de la comunitat valenciana SCITO, 2025, doi:<a href=\"https://doi.org/10.29363/nanoge.matsusspring.2025.173\">10.29363/nanoge.matsusspring.2025.173</a>.","short":"S. Lee, D. Balazs, S. Horta, A. Rayaroth Puthiyaveettil, M. Ibáñez, in:, Proceedings of the MATSUS Spring 2025 Conference, Fundació de la comunitat valenciana SCITO, 2025.","ista":"Lee S, Balazs D, Horta S, Rayaroth Puthiyaveettil A, Ibáñez M. 2025. Reaction precursor-mediated formation of stable supercrystals in colloidal nanocrystal synthesis: PbTe case. Proceedings of the MATSUS Spring 2025 Conference. MATSUS: Materials for Sustainable Development Conference, 173."},"quality_controlled":"1","abstract":[{"text":"Supercrystals represent three-dimensional orderings of colloidal nanocrystals (NCs), showcasing collective properties in photonics, phononics, and electronics applications.1,2 Recent studies have shown that such assemblies are directly produced during nanocrystal reactions.3–6 However, a fundamental understanding of in situ formed supercrystals that withstand typical NC purification processes remains underexplored, which is important for further use. Herein, we report the reaction precursor-mediated formation of stable PbTe supercrystals. Rationalizing the formation of these assemblies through small-angle x-ray scattering (SAXS) measurements, we unveil their formation mechanism. Our findings reveal that the supercrystal formation occurs in the presence of an excess of lead oleates in the crude solution. It should be noted that the formed supercrystals can be stabilized under specific conditions determined by the lead oleate cluster concentration, content of trioctylphosphine telluride (TOP-Te), NC size and the need of an annealing step at mild conditions. Furthermore, this approach allows for the continuous growth of a secondary phase within the supercrystal; for example in the case of PbTe supercrystals, a PbS shell can be grown on each PbTe NC constituent, resulting in core-shell PbTe-PbS supercrystals. Our work elucidates that reaction precursors play an important role in in situ SC formation and stabilization, implying the possibility of applying this knowledge to other NC reactions.","lang":"eng"}],"article_processing_charge":"No","day":"15","project":[{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}],"department":[{"_id":"MaIb"},{"_id":"LifeSc"}],"oa_version":"None","author":[{"last_name":"Lee","id":"BB243B88-D767-11E9-B658-BC13E6697425","orcid":"0000-0002-6962-8598","first_name":"Seungho","full_name":"Lee, Seungho"},{"full_name":"Balazs, Daniel","orcid":"0000-0001-7597-043X","first_name":"Daniel","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E","last_name":"Balazs"},{"id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","first_name":"Sharona","last_name":"Horta","full_name":"Horta, Sharona"},{"first_name":"Aiswarya","id":"8aceb01b-8972-11ed-ae7b-d5fe53775add","last_name":"Rayaroth Puthiyaveettil","full_name":"Rayaroth Puthiyaveettil, Aiswarya"},{"full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Ibáñez"}],"OA_type":"closed access","title":"Reaction precursor-mediated formation of stable supercrystals in colloidal nanocrystal synthesis: PbTe case","doi":"10.29363/nanoge.matsusspring.2025.173","status":"public","publication_status":"published","date_updated":"2026-02-19T09:25:57Z","type":"conference","corr_author":"1"},{"month":"04","publication":"The American Naturalist","external_id":{"pmid":["40179429"],"arxiv":["2205.02645"],"isi":["001433250500001"]},"year":"2025","citation":{"ieee":"A. Nabeel <i>et al.</i>, “Discovering stochastic dynamical equations from ecological time series data,” <i>The American Naturalist</i>, vol. 205, no. 4. University of Chicago Press, pp. E100–E117, 2025.","ama":"Nabeel A, Karichannavar A, Palathingal S, et al. Discovering stochastic dynamical equations from ecological time series data. <i>The American Naturalist</i>. 2025;205(4):E100-E117. doi:<a href=\"https://doi.org/10.1086/734083\">10.1086/734083</a>","apa":"Nabeel, A., Karichannavar, A., Palathingal, S., Jhawar, J., Brückner, D., Raj M, D., &#38; Guttal, V. (2025). Discovering stochastic dynamical equations from ecological time series data. <i>The American Naturalist</i>. University of Chicago Press. <a href=\"https://doi.org/10.1086/734083\">https://doi.org/10.1086/734083</a>","chicago":"Nabeel, Arshed, Ashwin Karichannavar, Shuaib Palathingal, Jitesh Jhawar, David Brückner, Danny Raj M, and Vishwesha Guttal. “Discovering Stochastic Dynamical Equations from Ecological Time Series Data.” <i>The American Naturalist</i>. University of Chicago Press, 2025. <a href=\"https://doi.org/10.1086/734083\">https://doi.org/10.1086/734083</a>.","mla":"Nabeel, Arshed, et al. “Discovering Stochastic Dynamical Equations from Ecological Time Series Data.” <i>The American Naturalist</i>, vol. 205, no. 4, University of Chicago Press, 2025, pp. E100–17, doi:<a href=\"https://doi.org/10.1086/734083\">10.1086/734083</a>.","short":"A. Nabeel, A. Karichannavar, S. Palathingal, J. Jhawar, D. Brückner, D. Raj M, V. Guttal, The American Naturalist 205 (2025) E100–E117.","ista":"Nabeel A, Karichannavar A, Palathingal S, Jhawar J, Brückner D, Raj M D, Guttal V. 2025. Discovering stochastic dynamical equations from ecological time series data. The American Naturalist. 205(4), E100–E117."},"project":[{"_id":"34e2a5b5-11ca-11ed-8bc3-b2265616ef0b","name":"A mechano-chemical theory for stem cell fate decisions in organoid development","grant_number":"ALTF 343-2022"}],"day":"01","article_processing_charge":"No","volume":205,"oa_version":"Preprint","OA_type":"green","oa":1,"doi":"10.1086/734083","publication_status":"published","status":"public","date_updated":"2025-09-30T14:14:43Z","page":"E100-E117","intvolume":"       205","_id":"20056","date_published":"2025-04-01T00:00:00Z","pmid":1,"acknowledgement":"V.G. acknowledges support from the Science and Engi-neering Research Board, Department of Biotechnology,and the Indo-French Centre for the Promotion of Ad-vanced Research (64T4-1). D.R.M. acknowledges supportfrom a Department of Science and Technology (DST) In-novation in Science Pursuit for Inspired Research (IN-SPIRE) Faculty Award. J.J. acknowledges support froma Humboldt postdoctoral fellowship and the Heidelber-ger Akademie der Wissenschaften, Heidelberg, Germany.D.B.B. acknowledges support from the NOMIS Founda-tion and an European Molecular Biology Organization(EMBO) postdoctoral fellowship (ALTF 343-2022). A.N.and S.P. acknowledge support from Ministry of Educa-tion (MoE) PhD fellowships. We thank Ashrit Mangal-wedhekar, Vivek Jadhav, Shikhara Bhat, Cassandre Aimon,and Harishankar Muppirala for comments on the manu-script and code. We thank Kollegala Sharma for his inputon the Kannada translation of the title and abstract.Data-Driven Model Discovery E115","language":[{"iso":"eng"}],"issue":"4","OA_place":"repository","date_created":"2025-07-21T08:37:27Z","publisher":"University of Chicago Press","article_type":"original","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","quality_controlled":"1","abstract":[{"text":"Theoretical studies have shown that stochasticity can affect the dynamics of ecosystems in counterintuitive ways. However, without knowing the equations governing the dynamics of populations or ecosystems, it is difficult to ascertain the role of stochasticity in real datasets. Therefore, the inverse problem of inferring the governing stochastic equations from datasets is important. Here, we present an equation discovery methodology that takes time series data of state variables as input and outputs a stochastic differential equation. We achieve this by combining traditional approaches from stochastic calculus with the equation discovery techniques. We demonstrate the generality of the method via several applications. First, we deliberately choose various stochastic models with fundamentally different governing equations, yet they produce nearly identical steady-state distributions. We show that we can recover the correct underlying equations, and thus infer the structure of their stability, accurately from the analysis of time series data alone. We demonstrate our method on two real-world datasets—fish schooling and single-cell migration—that have vastly different spatiotemporal scales and dynamics. We illustrate various limitations and potential pitfalls of the method and how to overcome them via diagnostic measures. Finally, we provide our open-source code via a package named PyDaDDy (Python Library for Data-Driven Dynamics).","lang":"eng"}],"author":[{"full_name":"Nabeel, Arshed","last_name":"Nabeel","first_name":"Arshed"},{"first_name":"Ashwin","last_name":"Karichannavar","full_name":"Karichannavar, Ashwin"},{"first_name":"Shuaib","last_name":"Palathingal","full_name":"Palathingal, Shuaib"},{"first_name":"Jitesh","last_name":"Jhawar","full_name":"Jhawar, Jitesh"},{"full_name":"Brückner, David","last_name":"Brückner","first_name":"David","id":"e1e86031-6537-11eb-953a-f7ab92be508d","orcid":"0000-0001-7205-2975"},{"full_name":"Raj M, Danny","first_name":"Danny","last_name":"Raj M"},{"first_name":"Vishwesha","last_name":"Guttal","full_name":"Guttal, Vishwesha"}],"department":[{"_id":"EdHa"}],"title":"Discovering stochastic dynamical equations from ecological time series data","related_material":{"record":[{"status":"public","relation":"software","id":"20121"}]},"publication_identifier":{"issn":["0003-0147"],"eissn":["1537-5323"]},"arxiv":1,"type":"journal_article","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2205.02645","open_access":"1"}]},{"publication_identifier":{"issn":["2663-337X"],"isbn":["978-3-99078-060-2"]},"corr_author":"1","type":"dissertation","title":" Human microglia impact neuronal development in retinal organoids","related_material":{"record":[{"id":"11478","status":"public","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","status":"public","id":"19593"}]},"author":[{"first_name":"Verena","id":"32B7C918-F248-11E8-B48F-1D18A9856A87","last_name":"Hübschmann","full_name":"Hübschmann, Verena"}],"department":[{"_id":"GradSch"},{"_id":"SaSi"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"abstract":[{"text":"Prenatal immune challenges pose significant risks to human embryonic brain and eye development. However, we still lack knowledge about the safe usage of anti-inflammatory drugs during pregnancy. Human induced pluripotent stem cell (hIPSC)-derived brain organoid models provide a unique opportunity to investigate neuronal development and have started to explore functional consequences upon viral infection. However, brain organoids usually lack microglia, the brain-resident immune cells. They are present in the early human embryonic brain and actively participate in neuronal circuit development. At the same time, microglia are known for their immune-sensing properties and will influence viral-mediated effects. In my thesis, I was interested to study the multifunctional role of human microglia during retinal development. \r\nIn chapter 1, I characterize the innate occurrence of IBA1+-microglia-like cells within the retinal organoid differentiation (Bartalska et al., 2022). Therefore, we differentiate hIPSC using an unguided retinal organoid differentiation protocol and observe the presence of IBA1+-microglia-like cells alongside retinal cups between week 3 and 4 in 2.5D culture. However, instead of infiltrating the neuroectodermal sides, they enrich within non-pigmented, 3D-cystic compartments that develop in low numbers parallel to 3D-retinal organoids. To enrich for IBA1+-microglia precursors (preMG), we guided the differentiation with a low-dosed BMP4 application, which prevents retinal cup development and enhances microglia and 3D-cysts formation. We characterize the differentiated preMG for their microglia-like identity and validated their functionality. In parallel, mass spectrometry identifies the 3D-cysts to express mesenchymal and epithelial markers. We confirm that comparable 3D-cysts are also the preferential environment for IBA1+-microglia-like cells within the unguided retinal organoid differentiation. \r\nIn chapter 2, I investigate how microglia influence retinal development and whether they contribute to viral-mediated consequences (Schmied et al., 2025). Here, we assemble preMG, which we have characterized in chapter 1, into 3D-retinal organoids. Once the outer plexiform layer forms, microglia-like cells (iMG) populate them and interact with retinal cell types. However, at this developmental stage, the ganglion cell number decreases in 3D-retinal organoids. Thus, we adapted the model into 2D which promotes their survival. Integrated iMG engulf ganglion cells and control their cell number. In parallel, we apply the immunostimulant POLY(I:C) to mimic a fetal viral infection. Although POLY(I:C) stimulation affects iMG phenotype, it does not influence their interaction with ganglion cells. Furthermore, iMG presence significantly contributes to the supernatant’s inflammatory secretome and increases retinal cell proliferation. Simultaneous exposure to the non-steroidal anti-inflammatory drug (NSAID) ibuprofen dampens POLY(I:C)-mediated consequences of the iMG phenotype and ameliorates cell proliferation. Remarkably, while POLY(I:C) disrupts neuronal calcium dynamics independent of iMG presence, ibuprofen rescues this effect only in the presence of iMG. Mechanistically, ibuprofen blocks the enzymes cyclooxygenase 1 and 2 (COX1/ PTGS1 and COX2/ PTGS2) simultaneously, from which iMG predominantly express COX1. Selective inhibition of COX1 does not restore the calcium peak amplitude upon POLY(I:C) stimulation, indicating ibuprofen’s effect depends on the presence and interplay of both, COX1 and COX2. \r\nIn summary, we characterized the 3D-retinal organoid model for the occurrence of IBA1+-microglia like cells. As the innately developing IBA1+-cells enrich in mesenchymal over retinal structures, we optimized a protocol to differentiate IBA1+-microglia precursors. By combining these two models we generate microglia-assembled retinal organoids. Our results underscore the importance of microglia during neurodevelopment, in the context of prenatal immune challenges and provide insight into the mechanisms by which ibuprofen exerts its protective effects during embryonic development.","lang":"eng"}],"publisher":"Institute of Science and Technology Austria","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","language":[{"iso":"eng"}],"OA_place":"publisher","date_created":"2025-07-24T12:37:22Z","page":"151","_id":"20074","alternative_title":["ISTA Thesis"],"date_published":"2025-07-24T00:00:00Z","date_updated":"2026-05-06T12:49:36Z","doi":"10.15479/AT-ISTA-20074","status":"public","publication_status":"published","ddc":["570"],"oa_version":"Published Version","oa":1,"file_date_updated":"2025-07-30T09:29:09Z","file":[{"relation":"source_file","access_level":"closed","checksum":"d09f9984002353ad7442358394919bf3","file_id":"20086","file_name":"PhD_Thesis_Schmied.zip","date_created":"2025-07-30T08:47:53Z","content_type":"application/x-zip-compressed","date_updated":"2025-07-30T08:47:53Z","file_size":43566093,"creator":"vhuebsch"},{"file_size":13120922,"date_updated":"2025-07-30T09:29:09Z","creator":"vhuebsch","content_type":"application/pdf","file_id":"20087","file_name":"PhD_Thesis_Schmied.pdf","date_created":"2025-07-30T08:47:46Z","relation":"main_file","access_level":"open_access","checksum":"4833690d7283c587f518ba98eeb2c946"}],"project":[{"_id":"9B99D380-BA93-11EA-9121-9846C619BF3A","name":"How human microglia shape developing neurons during health and inflammation","grant_number":"SC19-017"}],"day":"24","article_processing_charge":"No","citation":{"ieee":"V. Schmied, “ Human microglia impact neuronal development in retinal organoids,” Institute of Science and Technology Austria, 2025.","apa":"Schmied, V. (2025). <i> Human microglia impact neuronal development in retinal organoids</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-20074\">https://doi.org/10.15479/AT-ISTA-20074</a>","ama":"Schmied V.  Human microglia impact neuronal development in retinal organoids. 2025. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-20074\">10.15479/AT-ISTA-20074</a>","chicago":"Schmied, Verena. “ Human Microglia Impact Neuronal Development in Retinal Organoids.” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/AT-ISTA-20074\">https://doi.org/10.15479/AT-ISTA-20074</a>.","short":"V. Schmied,  Human Microglia Impact Neuronal Development in Retinal Organoids, Institute of Science and Technology Austria, 2025.","ista":"Schmied V. 2025.  Human microglia impact neuronal development in retinal organoids. Institute of Science and Technology Austria.","mla":"Schmied, Verena. <i> Human Microglia Impact Neuronal Development in Retinal Organoids</i>. Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-20074\">10.15479/AT-ISTA-20074</a>."},"year":"2025","supervisor":[{"full_name":"Siegert, Sandra","last_name":"Siegert","orcid":"0000-0001-8635-0877","first_name":"Sandra","id":"36ACD32E-F248-11E8-B48F-1D18A9856A87"}],"has_accepted_license":"1","degree_awarded":"PhD","month":"07"},{"month":"07","publication":"Biology","external_id":{"isi":["001557922100001"]},"citation":{"ieee":"U. Rosani, N. Altan, P. Venier, E. Bortoletto, N. Volpi, and C. Bernecky, “Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels,” <i>Biology</i>, vol. 14, no. 8. MDPI, 2025.","ama":"Rosani U, Altan N, Venier P, Bortoletto E, Volpi N, Bernecky C. Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels. <i>Biology</i>. 2025;14(8). doi:<a href=\"https://doi.org/10.3390/biology14080930\">10.3390/biology14080930</a>","apa":"Rosani, U., Altan, N., Venier, P., Bortoletto, E., Volpi, N., &#38; Bernecky, C. (2025). Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels. <i>Biology</i>. MDPI. <a href=\"https://doi.org/10.3390/biology14080930\">https://doi.org/10.3390/biology14080930</a>","mla":"Rosani, Umberto, et al. “Ancestral Origin and Functional Expression of a Hyaluronic Acid Pathway Complement in Mussels.” <i>Biology</i>, vol. 14, no. 8, 930, MDPI, 2025, doi:<a href=\"https://doi.org/10.3390/biology14080930\">10.3390/biology14080930</a>.","ista":"Rosani U, Altan N, Venier P, Bortoletto E, Volpi N, Bernecky C. 2025. Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels. Biology. 14(8), 930.","short":"U. Rosani, N. Altan, P. Venier, E. Bortoletto, N. Volpi, C. Bernecky, Biology 14 (2025).","chicago":"Rosani, Umberto, Nehir Altan, Paola Venier, Enrico Bortoletto, Nicola Volpi, and Carrie Bernecky. “Ancestral Origin and Functional Expression of a Hyaluronic Acid Pathway Complement in Mussels.” <i>Biology</i>. MDPI, 2025. <a href=\"https://doi.org/10.3390/biology14080930\">https://doi.org/10.3390/biology14080930</a>."},"year":"2025","has_accepted_license":"1","oa":1,"oa_version":"Published Version","OA_type":"gold","day":"24","article_processing_charge":"Yes","volume":14,"file":[{"content_type":"application/pdf","creator":"dernst","file_size":1885781,"date_updated":"2025-07-31T09:11:09Z","checksum":"f5e059e66803fa54249c1db029aef0f6","access_level":"open_access","relation":"main_file","date_created":"2025-07-31T09:11:09Z","file_id":"20097","file_name":"2025_Biology_Rosani.pdf","success":1}],"file_date_updated":"2025-07-31T09:11:09Z","DOAJ_listed":"1","date_updated":"2025-09-30T14:10:07Z","ddc":["570"],"doi":"10.3390/biology14080930","PlanS_conform":"1","publication_status":"published","status":"public","OA_place":"publisher","date_created":"2025-07-25T08:28:26Z","issue":"8","acknowledgement":"This research was funded by the Italian Ministry of University and Research (MIUR), grant ID: P2022JEEMT (Developing a tool for the study of haplotype diversity in Mytilus galloprovincialis (HAMIGA)).","language":[{"iso":"eng"}],"date_published":"2025-07-24T00:00:00Z","article_number":"930","intvolume":"        14","_id":"20077","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","article_type":"original","publisher":"MDPI","isi":1,"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"department":[{"_id":"CaBe"}],"author":[{"last_name":"Rosani","first_name":"Umberto","full_name":"Rosani, Umberto"},{"last_name":"Altan","first_name":"Nehir","full_name":"Altan, Nehir"},{"last_name":"Venier","first_name":"Paola","full_name":"Venier, Paola"},{"first_name":"Enrico","last_name":"Bortoletto","full_name":"Bortoletto, Enrico"},{"last_name":"Volpi","first_name":"Nicola","full_name":"Volpi, Nicola"},{"orcid":"0000-0003-0893-7036","id":"2CB9DFE2-F248-11E8-B48F-1D18A9856A87","first_name":"Carrie A","last_name":"Bernecky","full_name":"Bernecky, Carrie A"}],"abstract":[{"text":"Hyaluronic acid (HA) is a key extracellular matrix component of vertebrates, where it mediates cell adhesion, immune regulation, and tissue remodeling through its interaction with specific receptors. Although HA has been detected in a few invertebrate species, the lack of fundamental components of the molecular HA pathway poses relevant objections about its functional role in these species. Mining genomic and transcriptomic data, we considered the conservation of the gene locus encoding for the extracellular link protein (XLINK) in marine mussels as well as its expression patterns. Structural and phylogenetic analyses were undertaken to evaluate possible similarities with vertebrate orthologs and to infer the origin of this gene in invertebrates. Biochemical analysis was used to quantify HA in tissues of Mytilus galloprovincialis. As a result, we confirm that the mussel can produce HA (up to 1.02 ng/mg in mantle) and that its genome encodes two XLINK gene loci. These loci are conserved in Mytilidae species and show a complex evolutionary path. Mussel XLINK genes appeared to be expressed during developmental stages in three mussel species, ranking in the top 100 expressed genes in M. trossulus at 17 h post-fertilization. In conclusion, the presence of HA and an active gene with the potential to bind HA suggests that mussels have the potential to synthesize and use HA and are among the few invertebrates encoding this gene.","lang":"eng"}],"quality_controlled":"1","publication_identifier":{"issn":["2079-7737"]},"type":"journal_article","title":"Ancestral origin and functional expression of a hyaluronic acid pathway complement in mussels"},{"volume":279,"article_processing_charge":"Yes (via OA deal)","day":"23","oa":1,"OA_type":"hybrid","oa_version":"Published Version","ddc":["500"],"status":"public","publication_status":"epub_ahead","PlanS_conform":"1","doi":"10.1016/j.jnt.2025.06.001","date_updated":"2026-06-18T18:19:48Z","month":"07","publication":"Journal of Number Theory","year":"2025","citation":{"ieee":"S. Barańczuk, B. Naskręcki, and M. Verzobio, “Divisibility sequences related to abelian varieties isogenous to a power of an elliptic curve,” <i>Journal of Number Theory</i>, vol. 279. Elsevier, pp. 170–183, 2025.","short":"S. Barańczuk, B. Naskręcki, M. Verzobio, Journal of Number Theory 279 (2025) 170–183.","ista":"Barańczuk S, Naskręcki B, Verzobio M. 2025. Divisibility sequences related to abelian varieties isogenous to a power of an elliptic curve. Journal of Number Theory. 279, 170–183.","mla":"Barańczuk, Stefan, et al. “Divisibility Sequences Related to Abelian Varieties Isogenous to a Power of an Elliptic Curve.” <i>Journal of Number Theory</i>, vol. 279, Elsevier, 2025, pp. 170–83, doi:<a href=\"https://doi.org/10.1016/j.jnt.2025.06.001\">10.1016/j.jnt.2025.06.001</a>.","chicago":"Barańczuk, Stefan, Bartosz Naskręcki, and Matteo Verzobio. “Divisibility Sequences Related to Abelian Varieties Isogenous to a Power of an Elliptic Curve.” <i>Journal of Number Theory</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.jnt.2025.06.001\">https://doi.org/10.1016/j.jnt.2025.06.001</a>.","apa":"Barańczuk, S., Naskręcki, B., &#38; Verzobio, M. (2025). Divisibility sequences related to abelian varieties isogenous to a power of an elliptic curve. <i>Journal of Number Theory</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jnt.2025.06.001\">https://doi.org/10.1016/j.jnt.2025.06.001</a>","ama":"Barańczuk S, Naskręcki B, Verzobio M. Divisibility sequences related to abelian varieties isogenous to a power of an elliptic curve. <i>Journal of Number Theory</i>. 2025;279:170-183. doi:<a href=\"https://doi.org/10.1016/j.jnt.2025.06.001\">10.1016/j.jnt.2025.06.001</a>"},"external_id":{"arxiv":["2309.09699"],"isi":["001541172400002"]},"abstract":[{"lang":"eng","text":"Let A be an abelian variety defined over a number field K, E/K be an elliptic curve, and ϕ : A → Em be an isogeny defined over K. Let P ∈ A(K) be such that ϕ(P)=(Q1,..., Qm) with RankZ(⟨Q1,...,Qm⟩)=1. We will study a divisibility sequence related to the point P and show its relation with elliptic divisibility sequences."}],"quality_controlled":"1","department":[{"_id":"TiBr"}],"author":[{"last_name":"Barańczuk","first_name":"Stefan","full_name":"Barańczuk, Stefan"},{"last_name":"Naskręcki","first_name":"Bartosz","full_name":"Naskręcki, Bartosz"},{"last_name":"Verzobio","id":"7aa8f170-131e-11ed-88e1-a9efd01027cb","first_name":"Matteo","orcid":"0000-0002-0854-0306","full_name":"Verzobio, Matteo"}],"title":"Divisibility sequences related to abelian varieties isogenous to a power of an elliptic curve","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.jnt.2025.06.001"}],"type":"journal_article","corr_author":"1","arxiv":1,"publication_identifier":{"issn":["0022-314X"]},"date_published":"2025-07-23T00:00:00Z","intvolume":"       279","_id":"20078","page":"170-183","date_created":"2025-07-27T22:01:25Z","OA_place":"publisher","scopus_import":"1","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"article_type":"original","publisher":"Elsevier"},{"acknowledgement":"The authors wish to thank all the participants and health professionals involved in this study. In addition, the authors wish to thank technical assistants Barbara Widmar, Matthias Witzmann-Stern and Isabella Haslinger for their work assisting with this study; and Simon Hippenmeyer for access to bioinformatic infrastructure and resources.\r\nOpen access funding was provided by the Medical University of Vienna.","language":[{"iso":"eng"}],"scopus_import":"1","issue":"3","date_created":"2025-07-27T22:01:25Z","article_number":"104942","intvolume":"        51","_id":"20079","date_published":"2025-07-17T00:00:00Z","pmid":1,"publisher":"Elsevier","article_type":"original","isi":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","author":[{"first_name":"Iveta","last_name":"Yotova","full_name":"Yotova, Iveta"},{"full_name":"Proestling, Katharina","last_name":"Proestling","first_name":"Katharina"},{"orcid":"0000-0002-7462-0048","id":"48EA0138-F248-11E8-B48F-1D18A9856A87","first_name":"Florian","last_name":"Pauler","full_name":"Pauler, Florian"},{"full_name":"Rainer, Lisa","first_name":"Lisa","last_name":"Rainer"},{"last_name":"Kaup","first_name":"Leonie","full_name":"Kaup, Leonie"},{"last_name":"Heine","first_name":"Jana","full_name":"Heine, Jana"},{"full_name":"Sandrieser, Lejla","first_name":"Lejla","last_name":"Sandrieser"},{"full_name":"Wenzl, René","first_name":"René","last_name":"Wenzl"},{"first_name":"Quanah J.","last_name":"Hudson","full_name":"Hudson, Quanah J."}],"department":[{"_id":"SiHi"}],"quality_controlled":"1","abstract":[{"text":"Research question: Is LINC01638 involved in regulation of epithelial-to-mesenchymal transition (EMT) in endometriosis?\r\nDesign: A prospective patient cohort study was combined with functional experiments in the 12Z endometriosis epithelial cell line to investigate the role of LINC01638 in endometriosis. Eutopic endometrial samples were collected by curettage, and ectopic endometrial lesion samples were collected by laparoscopic surgery from 24 control patients and 41 patients with endometriosis. The phenotype of 12Z cells was assessed following LINC01638 knockdown using siRNA, performing proliferation, adhesion, migration and invasion assays, as well as assessing apoptosis and cell cycle changes with flow cytometry assays. In order to assess the relationship between LINC01638 and histone deacetylase class 1 enzyme (HDAC1), LINC01638 knockdown was combined with HDAC inhibition with the specific HDAC inhibitor romidepsin.\r\nResults: LINC01638 was up-regulated in the epithelial layer of endometriotic lesions, and LINC01638 knockdown in 12Z cells led to reduced proliferation, adhesion, migration and invasion. The reduction in proliferation was associated with increased p21 and p27 expression, and G1 phase arrest. Further analysis of LINC01638 control and knockdown cells revealed that a number of transcription factors associated with EMT are down-regulated in knockdown cells, along with the cytoskeleton regulatory gene RHOB, while HDAC1 was up-regulated. Chromatin immunoprecipitation analysis and HDAC1 inhibitory treatment combined with LINC01638 knockdown indicated that LINC01638 regulates RHOB expression via HDAC1-mediated promoter deacetylation. RHOB is up-regulated in the epithelial layer of endometriotic lesions compared with eutopic endometrium, supporting a role in the disease.\r\nConclusions: LINC01638 is an epigenetic regulator of the pathogenesis of endometriosis, promoting proliferation and EMT of endometriotic lesions.","lang":"eng"}],"publication_identifier":{"issn":["1472-6483"],"eissn":["1472-6491"]},"type":"journal_article","title":"LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression","publication":"Reproductive Biomedicine Online","month":"07","external_id":{"isi":["001549819000002"],"pmid":["40680553"]},"year":"2025","citation":{"apa":"Yotova, I., Proestling, K., Pauler, F., Rainer, L., Kaup, L., Heine, J., … Hudson, Q. J. (2025). LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression. <i>Reproductive Biomedicine Online</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.rbmo.2025.104942\">https://doi.org/10.1016/j.rbmo.2025.104942</a>","ama":"Yotova I, Proestling K, Pauler F, et al. LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression. <i>Reproductive Biomedicine Online</i>. 2025;51(3). doi:<a href=\"https://doi.org/10.1016/j.rbmo.2025.104942\">10.1016/j.rbmo.2025.104942</a>","short":"I. Yotova, K. Proestling, F. Pauler, L. Rainer, L. Kaup, J. Heine, L. Sandrieser, R. Wenzl, Q.J. Hudson, Reproductive Biomedicine Online 51 (2025).","ista":"Yotova I, Proestling K, Pauler F, Rainer L, Kaup L, Heine J, Sandrieser L, Wenzl R, Hudson QJ. 2025. LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression. Reproductive Biomedicine Online. 51(3), 104942.","mla":"Yotova, Iveta, et al. “LINC01638 Promotes Epithelial-to-Mesenchymal Transition in Endometriosis Epithelial Cells by up-Regulating RHOB via HDAC1 Suppression.” <i>Reproductive Biomedicine Online</i>, vol. 51, no. 3, 104942, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.rbmo.2025.104942\">10.1016/j.rbmo.2025.104942</a>.","chicago":"Yotova, Iveta, Katharina Proestling, Florian Pauler, Lisa Rainer, Leonie Kaup, Jana Heine, Lejla Sandrieser, René Wenzl, and Quanah J. Hudson. “LINC01638 Promotes Epithelial-to-Mesenchymal Transition in Endometriosis Epithelial Cells by up-Regulating RHOB via HDAC1 Suppression.” <i>Reproductive Biomedicine Online</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.rbmo.2025.104942\">https://doi.org/10.1016/j.rbmo.2025.104942</a>.","ieee":"I. Yotova <i>et al.</i>, “LINC01638 promotes epithelial-to-mesenchymal transition in endometriosis epithelial cells by up-regulating RHOB via HDAC1 suppression,” <i>Reproductive Biomedicine Online</i>, vol. 51, no. 3. Elsevier, 2025."},"oa_version":"None","OA_type":"closed access","day":"17","article_processing_charge":"No","volume":51,"date_updated":"2025-09-30T14:10:46Z","doi":"10.1016/j.rbmo.2025.104942","publication_status":"published","status":"public"},{"PlanS_conform":"1","publication_status":"published","status":"public","doi":"10.3389/fpls.2025.1612366","ddc":["580"],"date_updated":"2026-05-20T07:53:03Z","DOAJ_listed":"1","project":[{"grant_number":"207362","name":"Hormonal cross-talk in plant organogenesis","_id":"253FCA6A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"file":[{"date_created":"2025-07-31T07:28:54Z","success":1,"file_name":"2025_FrontiersPlantSc_Gallemi.pdf","file_id":"20093","checksum":"9e6b8b53ba56d4a24a9bd91cf6d2dc58","access_level":"open_access","relation":"main_file","creator":"dernst","date_updated":"2025-07-31T07:28:54Z","file_size":3665187,"content_type":"application/pdf"}],"file_date_updated":"2025-07-31T07:28:54Z","volume":16,"article_processing_charge":"Yes","day":"04","OA_type":"gold","oa_version":"Published Version","oa":1,"has_accepted_license":"1","year":"2025","citation":{"ieee":"M. Gallemi <i>et al.</i>, “Dual role of pectin methyl esterase activity in the regulation of plant cell wall biophysical properties,” <i>Frontiers in Plant Science</i>, vol. 16. Frontiers Media, 2025.","ama":"Gallemi M, Montesinos López JC, Zarevski N, et al. Dual role of pectin methyl esterase activity in the regulation of plant cell wall biophysical properties. <i>Frontiers in Plant Science</i>. 2025;16. doi:<a href=\"https://doi.org/10.3389/fpls.2025.1612366\">10.3389/fpls.2025.1612366</a>","apa":"Gallemi, M., Montesinos López, J. C., Zarevski, N., Pribyl, J., Skládal, P., Hannezo, E. B., &#38; Benková, E. (2025). Dual role of pectin methyl esterase activity in the regulation of plant cell wall biophysical properties. <i>Frontiers in Plant Science</i>. Frontiers Media. <a href=\"https://doi.org/10.3389/fpls.2025.1612366\">https://doi.org/10.3389/fpls.2025.1612366</a>","ista":"Gallemi M, Montesinos López JC, Zarevski N, Pribyl J, Skládal P, Hannezo EB, Benková E. 2025. Dual role of pectin methyl esterase activity in the regulation of plant cell wall biophysical properties. Frontiers in Plant Science. 16, 1612366.","short":"M. Gallemi, J.C. Montesinos López, N. Zarevski, J. Pribyl, P. Skládal, E.B. Hannezo, E. Benková, Frontiers in Plant Science 16 (2025).","mla":"Gallemi, Marçal, et al. “Dual Role of Pectin Methyl Esterase Activity in the Regulation of Plant Cell Wall Biophysical Properties.” <i>Frontiers in Plant Science</i>, vol. 16, 1612366, Frontiers Media, 2025, doi:<a href=\"https://doi.org/10.3389/fpls.2025.1612366\">10.3389/fpls.2025.1612366</a>.","chicago":"Gallemi, Marçal, Juan C Montesinos López, Nikola Zarevski, Jan Pribyl, Petr Skládal, Edouard B Hannezo, and Eva Benková. “Dual Role of Pectin Methyl Esterase Activity in the Regulation of Plant Cell Wall Biophysical Properties.” <i>Frontiers in Plant Science</i>. Frontiers Media, 2025. <a href=\"https://doi.org/10.3389/fpls.2025.1612366\">https://doi.org/10.3389/fpls.2025.1612366</a>."},"external_id":{"pmid":["40688689"],"isi":["001530690900001"]},"ec_funded":1,"publication":"Frontiers in Plant Science","month":"07","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"},{"_id":"E-Lib"}],"title":"Dual role of pectin methyl esterase activity in the regulation of plant cell wall biophysical properties","corr_author":"1","type":"journal_article","publication_identifier":{"eissn":["1664-462X"]},"abstract":[{"lang":"eng","text":"Introduction: Acid-growth theory has been postulated in the 70s to explain the rapid elongation of plant cells in response to the hormone auxin. More recently, it has been demonstrated that activation of the proton ATPs pump (H+-ATPs) promoting acidification of the apoplast is the principal mechanism by which auxin and other hormones such as brassinosteroids (BR) induce cell elongation. Despite these advances, the impact of this acidification on the mechanical properties of the cell wall remained largely unexplored.\r\n\r\nMethods: Here, we use elongation assays of Arabidopsis thaliana hypocotyls and Atomic Force Microscopy (AFM) to correlate hormone-induced tissue elongation and local changes in cell wall mechanical properties. Furthermore, employing transgenic lines over-expressing Pectin Methyl Esterase (PME), along with calcium chelators, we investigate the effect of pectin modification in hormone-driven cell elongation.\r\n\r\nResults: We demonstrate that acidification of apoplast is necessary and sufficient to induce cell elongation through promoting cell wall softening. Moreover, we show that enhanced PME activity can induce both cell wall softening or stiffening in extracellular calcium dependent-manner and that tight control of PME activity is required for proper hypocotyl elongation.\r\n\r\nDiscussion: Our results confirm a dual role of PME in plant cell elongation. However, further investigation is needed to assess the status of pectin following short- or long-term PME treatments in order to determine if pectin methyl-esterification might promote its degradation as well as the role of PME inhibitors upon PME induction."}],"quality_controlled":"1","author":[{"orcid":"0000-0003-4675-6893","first_name":"Marçal","id":"460C6802-F248-11E8-B48F-1D18A9856A87","last_name":"Gallemi","full_name":"Gallemi, Marçal"},{"full_name":"Montesinos López, Juan C","id":"310A8E3E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9179-6099","first_name":"Juan C","last_name":"Montesinos López"},{"full_name":"Zarevski, Nikola","last_name":"Zarevski","first_name":"Nikola","id":"18e95355-e05a-11ea-a9c0-8fba1b89e83a"},{"full_name":"Pribyl, Jan","first_name":"Jan","last_name":"Pribyl"},{"first_name":"Petr","last_name":"Skládal","full_name":"Skládal, Petr"},{"last_name":"Hannezo","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","first_name":"Edouard B","orcid":"0000-0001-6005-1561","full_name":"Hannezo, Edouard B"},{"last_name":"Benková","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","orcid":"0000-0002-8510-9739","full_name":"Benková, Eva"}],"department":[{"_id":"EdHa"},{"_id":"EvBe"},{"_id":"CaGu"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"isi":1,"publisher":"Frontiers Media","article_type":"original","APC_amount":"3642,79 EUR","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"20080","intvolume":"        16","article_number":"1612366","pmid":1,"date_published":"2025-07-04T00:00:00Z","language":[{"iso":"eng"}],"acknowledgement":"The author(s) declare that financial support was received for the research and/or publication of this article. This work was supported by grants from the European Research Council (Starting Independent Research Grant ERC-2007-Stg- 207362-HCPO to EB) and MG was recipient of an IST Interdisciplinary project (IC1022IPC03).\r\nWe acknowledge Jaume F. Martı́nez Garcı́a for phyAphyB mutant seeds. We acknowledge CF Nanobiotechnology of CIISB, Instruct-CZ Centre, supported by MEYS CR (LM2018127). We gratefully acknowledge support by the Scientific Service Units at ISTA, including the Imaging and Optics and Lab Support facilities and Library. We thank Stefan Riegler for the efforts to establish immunodetection method.","OA_place":"publisher","date_created":"2025-07-27T22:01:26Z","scopus_import":"1"},{"status":"public","publication_status":"epub_ahead","doi":"10.1109/TIT.2025.3587340","date_updated":"2026-02-16T11:49:40Z","day":"11","article_processing_charge":"No","oa":1,"OA_type":"green","oa_version":"Preprint","citation":{"ieee":"A. R. Esposito, M. Gastpar, and I. Issa, “Sibson α-mutual information and its variational representations,” <i>IEEE Transactions on Information Theory</i>. IEEE, 2025.","chicago":"Esposito, Amedeo Roberto, Michael Gastpar, and Ibrahim Issa. “Sibson α-Mutual Information and Its Variational Representations.” <i>IEEE Transactions on Information Theory</i>. IEEE, 2025. <a href=\"https://doi.org/10.1109/TIT.2025.3587340\">https://doi.org/10.1109/TIT.2025.3587340</a>.","mla":"Esposito, Amedeo Roberto, et al. “Sibson α-Mutual Information and Its Variational Representations.” <i>IEEE Transactions on Information Theory</i>, IEEE, 2025, doi:<a href=\"https://doi.org/10.1109/TIT.2025.3587340\">10.1109/TIT.2025.3587340</a>.","short":"A.R. Esposito, M. Gastpar, I. Issa, IEEE Transactions on Information Theory (2025).","ista":"Esposito AR, Gastpar M, Issa I. 2025. Sibson α-mutual information and its variational representations. IEEE Transactions on Information Theory.","ama":"Esposito AR, Gastpar M, Issa I. Sibson α-mutual information and its variational representations. <i>IEEE Transactions on Information Theory</i>. 2025. doi:<a href=\"https://doi.org/10.1109/TIT.2025.3587340\">10.1109/TIT.2025.3587340</a>","apa":"Esposito, A. R., Gastpar, M., &#38; Issa, I. (2025). Sibson α-mutual information and its variational representations. <i>IEEE Transactions on Information Theory</i>. IEEE. <a href=\"https://doi.org/10.1109/TIT.2025.3587340\">https://doi.org/10.1109/TIT.2025.3587340</a>"},"year":"2025","external_id":{"arxiv":["2405.08352"]},"publication":"IEEE Transactions on Information Theory","month":"07","title":"Sibson α-mutual information and its variational representations","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2405.08352"}],"type":"journal_article","publication_identifier":{"issn":["0018-9448"],"eissn":["1557-9654"]},"arxiv":1,"abstract":[{"text":"Information measures can be constructed from Rényi divergences much like mutual information from Kullback-Leibler divergence. One such information measure is known as Sibson α-mutual information and has received renewed attention recently in several contexts: concentration of measure under dependence, statistical learning, hypothesis testing, and estimation theory. In this paper, we survey and extend the state of the art. In particular, we introduce variational representations for Sibson α-mutual information and employ them in each described context to derive novel results. Namely, we produce generalized Transportation-Cost inequalities and Fano-type inequalities. We also present an overview of known applications, spanning from learning theory and Bayesian risk to universal prediction.","lang":"eng"}],"quality_controlled":"1","department":[{"_id":"MaMo"}],"author":[{"first_name":"Amedeo Roberto","id":"9583e921-e1ad-11ec-9862-cef099626dc9","last_name":"Esposito","full_name":"Esposito, Amedeo Roberto"},{"full_name":"Gastpar, Michael","last_name":"Gastpar","first_name":"Michael"},{"full_name":"Issa, Ibrahim","last_name":"Issa","first_name":"Ibrahim"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","publisher":"IEEE","date_published":"2025-07-11T00:00:00Z","_id":"20081","date_created":"2025-07-27T22:01:26Z","OA_place":"repository","scopus_import":"1","language":[{"iso":"eng"}]},{"date_updated":"2026-04-28T13:26:50Z","ddc":["570"],"publication_status":"published","PlanS_conform":"1","status":"public","doi":"10.1038/s41590-025-02211-w","oa":1,"OA_type":"hybrid","oa_version":"Published Version","volume":26,"article_processing_charge":"Yes (via OA deal)","day":"01","file_date_updated":"2025-07-31T08:00:33Z","project":[{"_id":"bd91e723-d553-11ed-ba76-fe7eeb2185fd","name":"Pushing from within: Control of cell shape, integrity and motility by cytoskeletal pushing forces","grant_number":"101071793"},{"grant_number":"944-2020","_id":"c092d618-5a5b-11eb-8a69-f92e1e843fc8","name":"Bioelectric patrolling: the role of the local membrane potential in immune cell migration"}],"file":[{"creator":"dernst","date_updated":"2025-07-31T08:00:33Z","file_size":13514646,"content_type":"application/pdf","date_created":"2025-07-31T08:00:33Z","success":1,"file_name":"2025_NatureImmunology_ReisRodrigues.pdf","file_id":"20096","access_level":"open_access","checksum":"0c725123dca7797c682609bff2c4c5ac","relation":"main_file"}],"citation":{"ama":"Dos Reis Rodrigues P, Avellaneda Sarrió M, Canigova N, et al. Migrating immune cells globally coordinate protrusive forces. <i>Nature Immunology</i>. 2025;26:1258–1266. doi:<a href=\"https://doi.org/10.1038/s41590-025-02211-w\">10.1038/s41590-025-02211-w</a>","apa":"Dos Reis Rodrigues, P., Avellaneda Sarrió, M., Canigova, N., Gärtner, F. R., Vaahtomeri, K., Riedl, M., … Sixt, M. K. (2025). Migrating immune cells globally coordinate protrusive forces. <i>Nature Immunology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41590-025-02211-w\">https://doi.org/10.1038/s41590-025-02211-w</a>","chicago":"Dos Reis Rodrigues, Patricia, Mario Avellaneda Sarrió, Nikola Canigova, Florian R Gärtner, Kari Vaahtomeri, Michael Riedl, Ingrid de Vries, et al. “Migrating Immune Cells Globally Coordinate Protrusive Forces.” <i>Nature Immunology</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41590-025-02211-w\">https://doi.org/10.1038/s41590-025-02211-w</a>.","ista":"Dos Reis Rodrigues P, Avellaneda Sarrió M, Canigova N, Gärtner FR, Vaahtomeri K, Riedl M, de Vries I, Merrin J, Hauschild R, Fukui Y, Juanes Garcia A, Sixt MK. 2025. Migrating immune cells globally coordinate protrusive forces. Nature Immunology. 26, 1258–1266.","mla":"Dos Reis Rodrigues, Patricia, et al. “Migrating Immune Cells Globally Coordinate Protrusive Forces.” <i>Nature Immunology</i>, vol. 26, Springer Nature, 2025, pp. 1258–1266, doi:<a href=\"https://doi.org/10.1038/s41590-025-02211-w\">10.1038/s41590-025-02211-w</a>.","short":"P. Dos Reis Rodrigues, M. Avellaneda Sarrió, N. Canigova, F.R. Gärtner, K. Vaahtomeri, M. Riedl, I. de Vries, J. Merrin, R. Hauschild, Y. Fukui, A. Juanes Garcia, M.K. Sixt, Nature Immunology 26 (2025) 1258–1266.","ieee":"P. Dos Reis Rodrigues <i>et al.</i>, “Migrating immune cells globally coordinate protrusive forces,” <i>Nature Immunology</i>, vol. 26. Springer Nature, pp. 1258–1266, 2025."},"year":"2025","external_id":{"isi":["001529134300001"],"pmid":["40664976"]},"has_accepted_license":"1","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"month":"08","publication":"Nature Immunology","corr_author":"1","type":"journal_article","publication_identifier":{"issn":["1529-2908"],"eissn":["1529-2916"]},"related_material":{"record":[{"id":"20149","status":"public","relation":"dissertation_contains"}],"link":[{"relation":"press_release","description":"News on ISTA website","url":"https://ista.ac.at/en/news/bench-pressing-cells/"}]},"title":"Migrating immune cells globally coordinate protrusive forces","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"department":[{"_id":"MiSi"},{"_id":"NanoFab"},{"_id":"Bio"}],"author":[{"last_name":"Dos Reis Rodrigues","orcid":"0000-0003-1681-508X","first_name":"Patricia","id":"26E95904-5160-11E9-9C0B-C5B0DC97E90F","full_name":"Dos Reis Rodrigues, Patricia"},{"full_name":"Avellaneda Sarrió, Mario","last_name":"Avellaneda Sarrió","id":"DC4BA84C-56E6-11EA-AD5D-348C3DDC885E","orcid":"0000-0001-6406-524X","first_name":"Mario"},{"full_name":"Canigova, Nikola","first_name":"Nikola","orcid":"0000-0002-8518-5926","id":"3795523E-F248-11E8-B48F-1D18A9856A87","last_name":"Canigova"},{"last_name":"Gärtner","id":"397A88EE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6120-3723","first_name":"Florian R","full_name":"Gärtner, Florian R"},{"id":"368EE576-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7829-3518","first_name":"Kari","last_name":"Vaahtomeri","full_name":"Vaahtomeri, Kari"},{"full_name":"Riedl, Michael","last_name":"Riedl","id":"3BE60946-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4844-6311","first_name":"Michael"},{"full_name":"De Vries, Ingrid","id":"4C7D837E-F248-11E8-B48F-1D18A9856A87","first_name":"Ingrid","last_name":"De Vries"},{"orcid":"0000-0001-5145-4609","first_name":"Jack","id":"4515C308-F248-11E8-B48F-1D18A9856A87","last_name":"Merrin","full_name":"Merrin, Jack"},{"id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9843-3522","first_name":"Robert","last_name":"Hauschild","full_name":"Hauschild, Robert"},{"full_name":"Fukui, Yoshinori","first_name":"Yoshinori","last_name":"Fukui"},{"full_name":"Juanes Garcia, Alba","last_name":"Juanes Garcia","id":"40F05888-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1009-9652","first_name":"Alba"},{"last_name":"Sixt","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","first_name":"Michael K","orcid":"0000-0002-6620-9179","full_name":"Sixt, Michael K"}],"quality_controlled":"1","abstract":[{"text":"Efficient immune responses rely on the capacity of leukocytes to traverse diverse and complex tissues. To meet such changing environmental conditions, leukocytes usually adopt an ameboid configuration, using their forward-positioned nucleus as a probe to identify and follow the path of least resistance among pre-existing pores. We show that, in dense environments where even the largest pores preclude free passage, leukocytes position their nucleus behind the centrosome and organelles. The local compression imposed on the cell body by its surroundings triggers assembly of a central F-actin pool, located between cell front and nucleus. Central actin pushes outward to transiently dilate a path for organelles and nucleus. Pools of central and front actin are tightly coupled and experimental depletion of the central pool enhances actin accumulation and protrusion formation at the cell front. Although this shifted balance speeds up cells in permissive environments, migration in restrictive environments is impaired, as the unleashed leading edge dissociates from the trapped cell body. Our findings establish an actin regulatory loop that balances path dilation with advancement of the leading edge to maintain cellular coherence.","lang":"eng"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","isi":1,"publisher":"Springer Nature","article_type":"letter_note","date_created":"2025-07-27T22:01:26Z","OA_place":"publisher","scopus_import":"1","language":[{"iso":"eng"}],"acknowledgement":"This research was supported by the Scientific Service Units of ISTA through resources provided by the Imaging and Optics, Preclinical and Lab Support Facilities. In particular, we thank M. A. Symth and F. G. G. Leite, from the Virus Service Team, who helped generating the lentiviral particles used in this study. We thank all the members of the Sixt group for valuable discussions and feedback, in particular, I. Mayer, for helping with T cell isolation and Z. (P.) Li for providing the Actin–GFP DC line. We are also thankful to J. Mandl and C. Shen for their feedback during the writing of this manuscript. This work was supported by a European Research Council grant ERC-SyG 101071793 to M.S. M.J.A. was supported by an HFSP Postdoctoral Fellowship LTF 177 2021 and A.J.G. by a Lise Meitner Fellowship of the FWF (Austrian Science Fund). Y.F. was supported by the AMED-CREST (JP19gm1310005), the Medical Research Center Initiative for High Depth Omics and CURE:JPMXP1323015486 for MIB, Kyushu University. Open access funding provided by Institute of Science and Technology (IST Austria).","date_published":"2025-08-01T00:00:00Z","pmid":1,"intvolume":"        26","_id":"20082","page":"1258–1266"},{"corr_author":"1","type":"journal_article","publication_identifier":{"eissn":["2752-5295"]},"related_material":{"record":[{"id":"20107","relation":"research_data","status":"public"}]},"title":"Sustainable development key to limiting climate change-driven wildfire damages","tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"department":[{"_id":"CaMu"}],"author":[{"last_name":"Hwong","id":"1217aa61-4dd1-11ec-9ac3-f2ba3f17ee22","first_name":"Yi-Ling","orcid":"0000-0001-9281-3479","full_name":"Hwong, Yi-Ling"},{"last_name":"Byers","first_name":"Edward","full_name":"Byers, Edward"},{"full_name":"Werning, Michaela","last_name":"Werning","first_name":"Michaela"},{"full_name":"Quilcaille, Yann","last_name":"Quilcaille","first_name":"Yann"}],"abstract":[{"text":"Climate change is causing wildfires to become more frequent and intense. While predicting burned areas using bioclimatic and anthropogenic factors is an active research area, few studies have examined what drives the economic damages of wildfires. Our study aims to fill this gap by analyzing key factors influencing global economic wildfire damages and projecting future damages under three shared socioeconomic pathways (SSPs). We apply regression analyses to identify significant predictors of economic wildfire damages at country levels and use the fitted model to project future damages under SSP126, SSP245, and SSP370. Results show that the human vulnerability index (HVI), reflecting socioeconomic conditions, is the strongest predictor of historical wildfire damages, followed by water vapor pressure deficit during the fire season and population density around forested areas. We found high population density to be associated with lower damages. These findings contrast with studies of burned areas, where climate factors are more dominant. Our model projects that by 2070, average global economic wildfire damages will be three times higher under SSP370 than SSP126. Our model also shows that following SSP126 not only reduces wildfire damages but also lessens the inequalities in damage distribution across countries. This pathway’s dual focus on equitable socioeconomic progress and climate action potentially enhances a country’s resilience that helps mitigate wildfire damages. Our analyses also indicate that strong socioeconomic development can offset wildfire damages associated with climate hazards, although this is less certain under SSP370. SSP126’s integrated approach improves both socioeconomic conditions and limits global warming, providing substantial benefits to less developed countries while still reducing damages in developed nations, despite their already low HVI scores. Our work complements existing research on burned areas and underscores the importance of sustainable development and international collaboration in reducing the economic damages of wildfires.","lang":"eng"}],"quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","publisher":"IOP Publishing","issue":"3","OA_place":"publisher","date_created":"2025-07-31T14:03:16Z","scopus_import":"1","language":[{"iso":"eng"}],"acknowledgement":"We thank Marina Andrijevic, Giacomo Falchetta, Samuel Lüthi, Caroline Muller, Carl Schleussner, and Adriano Vinca for providing useful ideas and feedback for this work. YLH is supported by funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska‐Curie Grant No. 101034413. EB, MW, and YQ are supported by the European Union’s Horizon Europe research and innovation programme under Grant Agreement No. 101081369 (SPARCCLE). We also thank the two anonymous reviewers for providing helpful feedback that greatly improved this manuscript.","date_published":"2025-07-15T00:00:00Z","_id":"20098","intvolume":"         4","article_number":"035005","DOAJ_listed":"1","date_updated":"2025-08-04T07:46:33Z","ddc":["550"],"status":"public","publication_status":"published","PlanS_conform":"1","doi":"10.1088/2752-5295/adec11","oa":1,"OA_type":"gold","oa_version":"Published Version","volume":4,"article_processing_charge":"Yes","day":"15","file":[{"date_updated":"2025-08-04T07:38:14Z","file_size":2807041,"creator":"dernst","content_type":"application/pdf","success":1,"file_id":"20108","file_name":"2025_EnvironResearchClimate_Hwong.pdf","date_created":"2025-08-04T07:38:14Z","relation":"main_file","access_level":"open_access","checksum":"ca679496767021e792b0378c48fdee8c"}],"project":[{"name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413"}],"file_date_updated":"2025-08-04T07:38:14Z","year":"2025","citation":{"ieee":"Y.-L. Hwong, E. Byers, M. Werning, and Y. Quilcaille, “Sustainable development key to limiting climate change-driven wildfire damages,” <i>Environmental Research: Climate</i>, vol. 4, no. 3. IOP Publishing, 2025.","apa":"Hwong, Y.-L., Byers, E., Werning, M., &#38; Quilcaille, Y. (2025). Sustainable development key to limiting climate change-driven wildfire damages. <i>Environmental Research: Climate</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/2752-5295/adec11\">https://doi.org/10.1088/2752-5295/adec11</a>","ama":"Hwong Y-L, Byers E, Werning M, Quilcaille Y. Sustainable development key to limiting climate change-driven wildfire damages. <i>Environmental Research: Climate</i>. 2025;4(3). doi:<a href=\"https://doi.org/10.1088/2752-5295/adec11\">10.1088/2752-5295/adec11</a>","mla":"Hwong, Yi-Ling, et al. “Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages.” <i>Environmental Research: Climate</i>, vol. 4, no. 3, 035005, IOP Publishing, 2025, doi:<a href=\"https://doi.org/10.1088/2752-5295/adec11\">10.1088/2752-5295/adec11</a>.","short":"Y.-L. Hwong, E. Byers, M. Werning, Y. Quilcaille, Environmental Research: Climate 4 (2025).","ista":"Hwong Y-L, Byers E, Werning M, Quilcaille Y. 2025. Sustainable development key to limiting climate change-driven wildfire damages. Environmental Research: Climate. 4(3), 035005.","chicago":"Hwong, Yi-Ling, Edward Byers, Michaela Werning, and Yann Quilcaille. “Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages.” <i>Environmental Research: Climate</i>. IOP Publishing, 2025. <a href=\"https://doi.org/10.1088/2752-5295/adec11\">https://doi.org/10.1088/2752-5295/adec11</a>."},"has_accepted_license":"1","publication":"Environmental Research: Climate","month":"07","ec_funded":1},{"file_date_updated":"2025-08-04T06:53:07Z","project":[{"call_identifier":"H2020","_id":"25B7EB9E-B435-11E9-9278-68D0E5697425","name":"Biophysics and circuit function of a giant cortical glutamatergic synapse","grant_number":"692692"},{"grant_number":"101026635","call_identifier":"H2020","_id":"fc2be41b-9c52-11eb-aca3-faa90aa144e9","name":"Synaptic computations of the hippocampal CA3 circuitry"},{"name":"Mechanisms of GABA release in hippocampal circuits","_id":"bd88be38-d553-11ed-ba76-81d5a70a6ef5","grant_number":"P36232"},{"grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships"}],"file":[{"checksum":"556ff9760661ecd23949d75031043b1f","access_level":"open_access","relation":"main_file","date_created":"2025-08-04T06:53:07Z","file_id":"20106","file_name":"2025_CellReports_Watson.pdf","success":1,"content_type":"application/pdf","creator":"dernst","file_size":27695214,"date_updated":"2025-08-04T06:53:07Z"}],"volume":44,"article_processing_charge":"Yes","day":"01","OA_type":"gold","oa_version":"Published Version","oa":1,"publication_status":"published","status":"public","PlanS_conform":"1","doi":"10.1016/j.celrep.2025.116080","ddc":["570"],"date_updated":"2025-09-30T14:12:02Z","DOAJ_listed":"1","ec_funded":1,"publication":"Cell Reports","month":"08","acknowledged_ssus":[{"_id":"Bio"},{"_id":"PreCl"},{"_id":"LifeSc"},{"_id":"M-Shop"}],"has_accepted_license":"1","citation":{"ieee":"J. Watson, V. M. Vargas Barroso, and P. M. Jonas, “Cell-specific wiring routes information flow through hippocampal CA3,” <i>Cell Reports</i>, vol. 44, no. 8. Elsevier, 2025.","apa":"Watson, J., Vargas Barroso, V. M., &#38; Jonas, P. M. (2025). Cell-specific wiring routes information flow through hippocampal CA3. <i>Cell Reports</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.celrep.2025.116080\">https://doi.org/10.1016/j.celrep.2025.116080</a>","ama":"Watson J, Vargas Barroso VM, Jonas PM. Cell-specific wiring routes information flow through hippocampal CA3. <i>Cell Reports</i>. 2025;44(8). doi:<a href=\"https://doi.org/10.1016/j.celrep.2025.116080\">10.1016/j.celrep.2025.116080</a>","short":"J. Watson, V.M. Vargas Barroso, P.M. Jonas, Cell Reports 44 (2025).","mla":"Watson, Jake, et al. “Cell-Specific Wiring Routes Information Flow through Hippocampal CA3.” <i>Cell Reports</i>, vol. 44, no. 8, 116080, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.celrep.2025.116080\">10.1016/j.celrep.2025.116080</a>.","ista":"Watson J, Vargas Barroso VM, Jonas PM. 2025. Cell-specific wiring routes information flow through hippocampal CA3. Cell Reports. 44(8), 116080.","chicago":"Watson, Jake, Victor M Vargas Barroso, and Peter M Jonas. “Cell-Specific Wiring Routes Information Flow through Hippocampal CA3.” <i>Cell Reports</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.celrep.2025.116080\">https://doi.org/10.1016/j.celrep.2025.116080</a>."},"year":"2025","external_id":{"isi":["001544472300002"]},"abstract":[{"lang":"eng","text":"The hippocampus, critical for learning and memory, is dogmatically described as a trisynaptic circuit where dentate gyrus granule cells (GCs), CA3 pyramidal neurons (PNs), and CA1 PNs are serially connected. However, CA3 also forms an autoassociative network, and its PNs have diverse morphologies, intrinsic properties, and GC input levels. How PN subtypes compose this recurrent network is unknown. To determine the synaptic arrangement of identified CA3 PNs, we combine multicellular patch-clamp recording and post hoc morphological analysis in mouse hippocampal slices. PNs can be divided into distinct “superficial” and “deep” subclasses, the latter including previously reported “athorny” cells. Subclasses have distinct input-output transformations and asymmetric connectivity, which is more abundant from superficial to deep PNs, splitting CA3 locally into two parallel recurrent networks. Coincident spontaneous inhibition occurs frequently within but not between subclasses, implying subclass-specific inhibitory innervation. Our results suggest two separately controlled sublayers for parallel information processing in hippocampal CA3."}],"quality_controlled":"1","author":[{"last_name":"Watson","orcid":"0000-0002-8698-3823","first_name":"Jake","id":"63836096-4690-11EA-BD4E-32803DDC885E","full_name":"Watson, Jake"},{"last_name":"Vargas Barroso","id":"2F55A9DE-F248-11E8-B48F-1D18A9856A87","first_name":"Victor M","full_name":"Vargas Barroso, Victor M"},{"orcid":"0000-0001-5001-4804","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","first_name":"Peter M","last_name":"Jonas","full_name":"Jonas, Peter M"}],"department":[{"_id":"PeJo"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"title":"Cell-specific wiring routes information flow through hippocampal CA3","type":"journal_article","corr_author":"1","publication_identifier":{"eissn":["2211-1247"],"issn":["2639-1856"]},"_id":"20099","intvolume":"        44","article_number":"116080","date_published":"2025-08-01T00:00:00Z","language":[{"iso":"eng"}],"acknowledgement":"We thank Andrea Navas-Olive and Rebecca J. Morse-Mora for critically reading an earlier version of the manuscript. We also thank Florian Marr and Christina Altmutter for excellent technical assistance, Alois Schlögl for programming and data-handling assistance, Todor Asenov for technical support, and Eleftheria Kralli-Beller for manuscript editing. This research was supported by the Scientific Services Units (SSUs) of ISTA. We are particularly grateful for assistance from the Imaging and Optics Facility, Preclinical Facility, Lab Support Facility, and Miba Machine Shop. The project received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement no. 692692 to P.J., Marie Skłodowska-Curie Actions Individual Fellowship no. 101026635 to J.F.W., and an ISTplus Fellowship through Marie Skłodowska-Curie grant agreement no. 754411 to V.V.-B.), the Austrian Science Fund (P 36232-B, PAT 4178023, and Cluster of Excellence 10.55776/COE16 to P.J.), and a CONACyT fellowship (289638 to V.V.-B.) and was supported by a non-stipendiary EMBO fellowship (ALTF 756–2020 to J.F.W.).","OA_place":"publisher","issue":"8","date_created":"2025-08-03T22:01:30Z","scopus_import":"1","isi":1,"article_type":"original","publisher":"Elsevier","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345"},{"title":"Improving prediction accuracy in chimeric proteins with windowed multiple sequence alignment","related_material":{"record":[{"id":"20103","status":"public","relation":"software"}],"link":[{"url":"https://github.com/sankethvedula/AFChimera","relation":"software"}]},"publication_identifier":{"eissn":["2001-0370"]},"type":"journal_article","abstract":[{"text":"A key step in protein structure prediction involves the detection of co-evolving pairs of residues, a signal for spatial proximity. This information is gleaned from multiple sequence alignment and underscores Alphafold’s structure prediction for almost every known protein. A simple means to create proteins beyond those found in nature, is by unnaturally fusing together two known proteins or protein parts. Here we demonstrate that structured peptides are predicted with significantly reduced accuracy when added to the terminal ends of scaffold proteins. Appending the multiple sequence alignment for the individual peptide tags to that of the scaffold protein often restores prediction accuracy. This work suggests that this windowed multiple sequence alignment approach can be a useful tool for predicting the structure of fused, chimeric proteins.","lang":"eng"}],"quality_controlled":"1","author":[{"full_name":"Vedula, Sanketh","first_name":"Sanketh","id":"94f2fe44-70fa-11f0-b76b-92922c09452b","last_name":"Vedula"},{"full_name":"Bronstein, Alexander","first_name":"Alexander","orcid":"0000-0001-9699-8730","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","last_name":"Bronstein"},{"full_name":"Marx, Ailie","last_name":"Marx","first_name":"Ailie"}],"department":[{"_id":"AlBr"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_type":"original","publisher":"Elsevier","isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"3292-3298","_id":"20100","intvolume":"        27","date_published":"2025-06-27T00:00:00Z","acknowledgement":"AM acknowledges the financial support of the Helmsley Fellowships Program for Sustainability and Health. AMB is supported by the Schmidt Chair in Artificial Intelligence.","language":[{"iso":"eng"}],"scopus_import":"1","OA_place":"publisher","date_created":"2025-08-03T22:01:31Z","doi":"10.1016/j.csbj.2025.07.039","publication_status":"published","PlanS_conform":"1","status":"public","ddc":["000","570"],"date_updated":"2025-11-27T14:09:59Z","DOAJ_listed":"1","file_date_updated":"2025-08-04T06:25:23Z","file":[{"checksum":"78d01f30fc1dc11dd2bd1d7bb7ac8a62","access_level":"open_access","relation":"main_file","date_created":"2025-08-04T06:25:23Z","success":1,"file_name":"2025_CompStrucBiotechJour_Vedula.pdf","file_id":"20104","content_type":"application/pdf","creator":"dernst","date_updated":"2025-08-04T06:25:23Z","file_size":6609770}],"day":"27","article_processing_charge":"Yes","volume":27,"oa_version":"Published Version","OA_type":"gold","oa":1,"has_accepted_license":"1","external_id":{"isi":["001583543100001"]},"year":"2025","citation":{"ieee":"S. Vedula, A. M. Bronstein, and A. Marx, “Improving prediction accuracy in chimeric proteins with windowed multiple sequence alignment,” <i>Computational and Structural Biotechnology Journal</i>, vol. 27. Elsevier, pp. 3292–3298, 2025.","chicago":"Vedula, Sanketh, Alex M. Bronstein, and Ailie Marx. “Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment.” <i>Computational and Structural Biotechnology Journal</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.csbj.2025.07.039\">https://doi.org/10.1016/j.csbj.2025.07.039</a>.","ista":"Vedula S, Bronstein AM, Marx A. 2025. Improving prediction accuracy in chimeric proteins with windowed multiple sequence alignment. Computational and Structural Biotechnology Journal. 27, 3292–3298.","short":"S. Vedula, A.M. Bronstein, A. Marx, Computational and Structural Biotechnology Journal 27 (2025) 3292–3298.","mla":"Vedula, Sanketh, et al. “Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment.” <i>Computational and Structural Biotechnology Journal</i>, vol. 27, Elsevier, 2025, pp. 3292–98, doi:<a href=\"https://doi.org/10.1016/j.csbj.2025.07.039\">10.1016/j.csbj.2025.07.039</a>.","apa":"Vedula, S., Bronstein, A. M., &#38; Marx, A. (2025). Improving prediction accuracy in chimeric proteins with windowed multiple sequence alignment. <i>Computational and Structural Biotechnology Journal</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.csbj.2025.07.039\">https://doi.org/10.1016/j.csbj.2025.07.039</a>","ama":"Vedula S, Bronstein AM, Marx A. Improving prediction accuracy in chimeric proteins with windowed multiple sequence alignment. <i>Computational and Structural Biotechnology Journal</i>. 2025;27:3292-3298. doi:<a href=\"https://doi.org/10.1016/j.csbj.2025.07.039\">10.1016/j.csbj.2025.07.039</a>"},"month":"06","publication":"Computational and Structural Biotechnology Journal"},{"related_material":{"record":[{"id":"20883","relation":"research_data","status":"public"}]},"title":"The neural basis of species-specific defensive behaviour in Peromyscus mice","publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"type":"journal_article","abstract":[{"lang":"eng","text":"Evading imminent threat from predators is critical for animal survival. Effective defensive strategies can vary, even between closely related species. However, the neural basis of such species-specific behaviours remains poorly understood1,2,3,4. Here we find that two sister species of deer mice (genus Peromyscus)5 show different responses to the same looming stimulus: Peromyscus maniculatus, which occupies densely vegetated habitats, predominantly escapes, whereas the open field specialist, Peromyscus polionotus, briefly freezes. This difference arises from species-specific escape thresholds, is largely context-independent, and can be triggered by both visual and auditory threat stimuli. Using immunohistochemistry and electrophysiological recordings, we find that although visual threat activates the superior colliculus in both species, the role of the dorsal periaqueductal grey (dPAG) in driving behaviour differs. Whereas dPAG activity scales with running speed in P. maniculatus, neural activity in the dPAG of P. polionotus correlates poorly with movement, including during visually triggered escape. Moreover, optogenetic activation of dPAG neurons elicits acceleration in P. maniculatus but not in P. polionotus, and their chemogenetic inhibition during a looming stimulus delays escape onset in P. maniculatus to match that of P. polionotus. Together, we trace species-specific escape thresholds to a central circuit node, downstream of peripheral sensory neurons, localizing an ecologically relevant behavioural difference to a specific region of the mammalian brain."}],"quality_controlled":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"department":[{"_id":"GradSch"}],"author":[{"first_name":"Felix","last_name":"Baier","full_name":"Baier, Felix"},{"full_name":"Reinhard, Katja","first_name":"Katja","last_name":"Reinhard"},{"last_name":"Nuttin","first_name":"Bram","full_name":"Nuttin, Bram"},{"first_name":"Arnau","last_name":"Sans-Dublanc","full_name":"Sans-Dublanc, Arnau"},{"full_name":"Liu, Chen","last_name":"Liu","first_name":"Chen"},{"full_name":"Tong, Victoria","first_name":"Victoria","last_name":"Tong"},{"last_name":"Murmann","first_name":"Julie Stefanie","id":"1d390868-f128-11eb-9611-a0ca5f7833b5","full_name":"Murmann, Julie Stefanie"},{"full_name":"Wierda, Keimpe","last_name":"Wierda","first_name":"Keimpe"},{"full_name":"Farrow, Karl","last_name":"Farrow","first_name":"Karl"},{"full_name":"Hoekstra, Hopi E.","last_name":"Hoekstra","first_name":"Hopi E."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","publisher":"Springer Nature","pmid":1,"date_published":"2025-07-23T00:00:00Z","page":"439-447","_id":"20101","intvolume":"       645","scopus_import":"1","date_created":"2025-08-03T22:01:31Z","OA_place":"publisher","acknowledgement":"The authors thank M. Yilmaz, M. Meister, M. Joesch and T. Branco for advice on the behavioural experiments; C. Dulac, V. Bitsikas, E. Diel and J. Chen for advice on the immunohistochemistry and RNAscope experiments; J. Greenwood and E. Soucy for technical and engineering help; A. Chrzanowska for help and advice on optogenetic experiments; A. Calzoni for help aligning histological sections to a brain atlas; S. Worthington for statistical advice; P. Gonçalves for advice with the electrophysiology analysis; I. Vlaemick for help with whole cell experiments; R. Hellmiss for figure design; B. Sabatini, V. Stempel, K. Tyssowski and N. Sanguinetti for feedback on the manuscript; and Y. M. Lee and A. Tomcho for photos of P. maniculatus and P. leucopus habitats (Fig. 1). F.B. was supported by an HHMI International Student Research Fellowship, a Grant-in-Aid of the American Society of Mammalogy, a Herchel Smith Graduate Fellowship, a Robert A. Chapman Memorial Scholarship, and a Joan Brockman Williamson Fellowship. This project received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement 665501 and by the FWO (12S7917N and 12S7920N) to K.R. and from European Research Council (ERC) (grant agreement 101075848) to K.R. V.T. was supported by a Harvard PRISE fellowship and a Harvard Museum of Comparative Zoology grant for undergraduate research. K.F. is supported by the FWO (G094616N and G091719N) and the NIH (1R01EY032101). This work was supported by the Howard Hughes Medical Institute, of which H.E.H. was an Investigator.","language":[{"iso":"eng"}],"ddc":["570"],"doi":"10.1038/s41586-025-09241-2","status":"public","publication_status":"published","date_updated":"2026-01-05T11:38:40Z","article_processing_charge":"Yes (in subscription journal)","day":"23","volume":645,"file_date_updated":"2025-12-30T07:39:45Z","file":[{"content_type":"application/pdf","creator":"dernst","file_size":53301589,"date_updated":"2025-12-30T07:39:45Z","access_level":"open_access","checksum":"7ea846a7a49b3b2a248f6a27ab13d591","relation":"main_file","date_created":"2025-12-30T07:39:45Z","file_name":"2025_Nature_Baier.pdf","file_id":"20884","success":1}],"oa":1,"oa_version":"Published Version","OA_type":"hybrid","has_accepted_license":"1","external_id":{"pmid":["40702175"]},"citation":{"ieee":"F. Baier <i>et al.</i>, “The neural basis of species-specific defensive behaviour in Peromyscus mice,” <i>Nature</i>, vol. 645. Springer Nature, pp. 439–447, 2025.","chicago":"Baier, Felix, Katja Reinhard, Bram Nuttin, Arnau Sans-Dublanc, Chen Liu, Victoria Tong, Julie Stefanie Murmann, Keimpe Wierda, Karl Farrow, and Hopi E. Hoekstra. “The Neural Basis of Species-Specific Defensive Behaviour in Peromyscus Mice.” <i>Nature</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41586-025-09241-2\">https://doi.org/10.1038/s41586-025-09241-2</a>.","short":"F. Baier, K. Reinhard, B. Nuttin, A. Sans-Dublanc, C. Liu, V. Tong, J.S. Murmann, K. Wierda, K. Farrow, H.E. Hoekstra, Nature 645 (2025) 439–447.","mla":"Baier, Felix, et al. “The Neural Basis of Species-Specific Defensive Behaviour in Peromyscus Mice.” <i>Nature</i>, vol. 645, Springer Nature, 2025, pp. 439–47, doi:<a href=\"https://doi.org/10.1038/s41586-025-09241-2\">10.1038/s41586-025-09241-2</a>.","ista":"Baier F, Reinhard K, Nuttin B, Sans-Dublanc A, Liu C, Tong V, Murmann JS, Wierda K, Farrow K, Hoekstra HE. 2025. The neural basis of species-specific defensive behaviour in Peromyscus mice. Nature. 645, 439–447.","apa":"Baier, F., Reinhard, K., Nuttin, B., Sans-Dublanc, A., Liu, C., Tong, V., … Hoekstra, H. E. (2025). The neural basis of species-specific defensive behaviour in Peromyscus mice. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-025-09241-2\">https://doi.org/10.1038/s41586-025-09241-2</a>","ama":"Baier F, Reinhard K, Nuttin B, et al. The neural basis of species-specific defensive behaviour in Peromyscus mice. <i>Nature</i>. 2025;645:439-447. doi:<a href=\"https://doi.org/10.1038/s41586-025-09241-2\">10.1038/s41586-025-09241-2</a>"},"year":"2025","publication":"Nature","month":"07"},{"has_accepted_license":"1","external_id":{"isi":["001538172800001"]},"citation":{"ieee":"F. Raffini <i>et al.</i>, “Phenotypic divergence and genomic architecture between parallel ecotypes at two different points on the speciation continuum in a marine snail,” <i>Molecular Ecology</i>, vol. 34, no. 21. Wiley, 2025.","short":"F. Raffini, A. De Jode, K. Johannesson, R. Faria, Z.B. Zagrodzka, A.M. Westram, J. Galindo, E. Rolán-Alvarez, R.K. Butlin, Molecular Ecology 34 (2025).","mla":"Raffini, Francesca, et al. “Phenotypic Divergence and Genomic Architecture between Parallel Ecotypes at Two Different Points on the Speciation Continuum in a Marine Snail.” <i>Molecular Ecology</i>, vol. 34, no. 21, e70025, Wiley, 2025, doi:<a href=\"https://doi.org/10.1111/mec.70025\">10.1111/mec.70025</a>.","ista":"Raffini F, De Jode A, Johannesson K, Faria R, Zagrodzka ZB, Westram AM, Galindo J, Rolán-Alvarez E, Butlin RK. 2025. Phenotypic divergence and genomic architecture between parallel ecotypes at two different points on the speciation continuum in a marine snail. Molecular Ecology. 34(21), e70025.","chicago":"Raffini, Francesca, Aurélien De Jode, Kerstin Johannesson, Rui Faria, Zuzanna B. Zagrodzka, Anja M Westram, Juan Galindo, Emilio Rolán-Alvarez, and Roger K. Butlin. “Phenotypic Divergence and Genomic Architecture between Parallel Ecotypes at Two Different Points on the Speciation Continuum in a Marine Snail.” <i>Molecular Ecology</i>. Wiley, 2025. <a href=\"https://doi.org/10.1111/mec.70025\">https://doi.org/10.1111/mec.70025</a>.","apa":"Raffini, F., De Jode, A., Johannesson, K., Faria, R., Zagrodzka, Z. B., Westram, A. M., … Butlin, R. K. (2025). Phenotypic divergence and genomic architecture between parallel ecotypes at two different points on the speciation continuum in a marine snail. <i>Molecular Ecology</i>. Wiley. <a href=\"https://doi.org/10.1111/mec.70025\">https://doi.org/10.1111/mec.70025</a>","ama":"Raffini F, De Jode A, Johannesson K, et al. Phenotypic divergence and genomic architecture between parallel ecotypes at two different points on the speciation continuum in a marine snail. <i>Molecular Ecology</i>. 2025;34(21). doi:<a href=\"https://doi.org/10.1111/mec.70025\">10.1111/mec.70025</a>"},"year":"2025","publication":"Molecular Ecology","month":"11","ddc":["570"],"doi":"10.1111/mec.70025","status":"public","publication_status":"published","PlanS_conform":"1","date_updated":"2025-12-30T09:25:45Z","day":"01","article_processing_charge":"Yes (in subscription journal)","volume":34,"file_date_updated":"2025-12-30T09:25:17Z","file":[{"date_created":"2025-12-30T09:25:17Z","file_name":"2025_MolecEcology_Raffini.pdf","file_id":"20906","success":1,"checksum":"ec01edda64cfbc6cbc8adf300f719644","access_level":"open_access","relation":"main_file","creator":"dernst","file_size":2767745,"date_updated":"2025-12-30T09:25:17Z","content_type":"application/pdf"}],"oa":1,"oa_version":"Published Version","OA_type":"hybrid","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","publisher":"Wiley","isi":1,"date_published":"2025-11-01T00:00:00Z","article_number":"e70025","intvolume":"        34","_id":"20102","scopus_import":"1","OA_place":"publisher","date_created":"2025-08-03T22:01:31Z","issue":"21","acknowledgement":"This study was supported by European Research Council grant 693030-BARRIERS to RKB; the Swedish Research Council (grant number 2021-04191) to KJ; the Portuguese Foundation for Science and Technology (FCT: 2020.00275.CEECIND and PTDC/BIA-EVL/1614/2021) to RF; grant PID2022-137935NB-I00 by MICIU/AEI/ 10.13039/501100011033/and ERDF/EU (ED431C 2020-05) to JG, grant PID2021-124930NB-I00 funded by MICIU/AEI/ 10.13039/501100011033/and ERDF/EU to ERA, Xunta de Galicia (ED431C 2024/22), Centro singular de Investigación de Galicia accreditation 2024-2027 (ED431G 2023/07), ‘ERDF A way of making Europe’ and Norwegian Research Council RCN, project 315287 to AMW.","language":[{"iso":"eng"}],"title":"Phenotypic divergence and genomic architecture between parallel ecotypes at two different points on the speciation continuum in a marine snail","publication_identifier":{"eissn":["1365-294X"],"issn":["0962-1083"]},"type":"journal_article","quality_controlled":"1","abstract":[{"lang":"eng","text":"Speciation is rarely observable directly. A way forward is to compare pairs of ecotypes that evolved in parallel in similar contexts but have reached different degrees of reproductive isolation. Such comparisons are possible in the marine snail Littorina saxatilis by contrasting barriers to gene flow between parallel ecotypes in Spain and Sweden. In both countries, divergent ecotypes have evolved to withstand either crab predation or wave action. Here, we explore transects spanning contact zones between the Crab and the Wave ecotypes using low-coverage whole-genome sequencing, morphological and behavioural traits. Despite parallel phenotypic divergence, distinct patterns of differentiation between the ecotypes emerged: a continuous cline in Sweden indicating a weak barrier to gene flow, but two highly genetically and phenotypically divergent, and partly spatially overlapping clusters in Spain suggesting a much stronger barrier to gene flow. The absence of Spanish early-generation hybrids supported strong isolation, but a low level of gene flow is evident from molecular data. In both countries, highly differentiated loci were located in both shared and country-specific chromosomal inversions but were also present in collinear regions. Despite being considered the same species and showing similar levels of phenotypic divergence, the Spanish ecotypes are much closer to full reproductive isolation than the Swedish ones. Barriers to gene flow of very different strengths between ecotypes within the same species might be explained by dissimilarities in the spatial arrangement of habitats, the selection gradients or the ages of the systems."}],"department":[{"_id":"NiBa"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"author":[{"full_name":"Raffini, Francesca","first_name":"Francesca","last_name":"Raffini"},{"full_name":"De Jode, Aurélien","first_name":"Aurélien","last_name":"De Jode"},{"full_name":"Johannesson, Kerstin","first_name":"Kerstin","last_name":"Johannesson"},{"full_name":"Faria, Rui","last_name":"Faria","first_name":"Rui"},{"last_name":"Zagrodzka","first_name":"Zuzanna B.","full_name":"Zagrodzka, Zuzanna B."},{"id":"3C147470-F248-11E8-B48F-1D18A9856A87","first_name":"Anja M","orcid":"0000-0003-1050-4969","last_name":"Westram","full_name":"Westram, Anja M"},{"first_name":"Juan","last_name":"Galindo","full_name":"Galindo, Juan"},{"full_name":"Rolán-Alvarez, Emilio","last_name":"Rolán-Alvarez","first_name":"Emilio"},{"full_name":"Butlin, Roger K.","last_name":"Butlin","first_name":"Roger K."}]},{"date_updated":"2025-11-27T14:09:58Z","type":"research_data_reference","main_file_link":[{"open_access":"1","url":"https://doi.org/10.7910/DVN/DYEBVM"}],"doi":"10.7910/DVN/DYEBVM","title":"Replication Data for: \"Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment\"","status":"public","ddc":["000"],"related_material":{"record":[{"id":"20100","relation":"used_for_analysis_in","status":"public"}]},"oa_version":"Published Version","author":[{"full_name":"Vedula, Sanketh","id":"94f2fe44-70fa-11f0-b76b-92922c09452b","first_name":"Sanketh","last_name":"Vedula"},{"full_name":"Bronstein, Alexander","first_name":"Alexander","orcid":"0000-0001-9699-8730","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","last_name":"Bronstein"},{"first_name":"Ailie","last_name":"Marx","full_name":"Marx, Ailie"}],"oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"department":[{"_id":"AlBr"}],"day":"27","abstract":[{"text":"Official implementation, windowed MSAs, and the predictions as reported in the manuscript titled \"Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment\". (2025-06-27)","lang":"eng"}],"article_processing_charge":"No","publisher":"Harvard Dataverse","citation":{"ama":"Vedula S, Bronstein AM, Marx A. Replication Data for: “Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment.” 2025. doi:<a href=\"https://doi.org/10.7910/DVN/DYEBVM\">10.7910/DVN/DYEBVM</a>","apa":"Vedula, S., Bronstein, A. M., &#38; Marx, A. (2025). Replication Data for: “Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment.” Harvard Dataverse. <a href=\"https://doi.org/10.7910/DVN/DYEBVM\">https://doi.org/10.7910/DVN/DYEBVM</a>","chicago":"Vedula, Sanketh, Alex M. Bronstein, and Ailie Marx. “Replication Data for: ‘Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment.’” Harvard Dataverse, 2025. <a href=\"https://doi.org/10.7910/DVN/DYEBVM\">https://doi.org/10.7910/DVN/DYEBVM</a>.","ista":"Vedula S, Bronstein AM, Marx A. 2025. Replication Data for: ‘Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment’, Harvard Dataverse, <a href=\"https://doi.org/10.7910/DVN/DYEBVM\">10.7910/DVN/DYEBVM</a>.","short":"S. Vedula, A.M. Bronstein, A. Marx, (2025).","mla":"Vedula, Sanketh, et al. <i>Replication Data for: “Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment.”</i> Harvard Dataverse, 2025, doi:<a href=\"https://doi.org/10.7910/DVN/DYEBVM\">10.7910/DVN/DYEBVM</a>.","ieee":"S. Vedula, A. M. Bronstein, and A. Marx, “Replication Data for: ‘Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment.’” Harvard Dataverse, 2025."},"year":"2025","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","month":"06","OA_place":"repository","date_created":"2025-08-04T06:18:55Z","_id":"20103","date_published":"2025-06-27T00:00:00Z"},{"date_published":"2025-05-21T00:00:00Z","ec_funded":1,"_id":"20107","OA_place":"repository","date_created":"2025-08-04T07:34:39Z","month":"05","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"apa":"Hwong, Y.-L., Byers, E., Werning, M., &#38; Quilcaille, Y. (2025). Data - Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages. Zenodo. <a href=\"https://doi.org/10.5281/ZENODO.13988679\">https://doi.org/10.5281/ZENODO.13988679</a>","ama":"Hwong Y-L, Byers E, Werning M, Quilcaille Y. Data - Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages. 2025. doi:<a href=\"https://doi.org/10.5281/ZENODO.13988679\">10.5281/ZENODO.13988679</a>","chicago":"Hwong, Yi-Ling, Edward Byers, Michaela Werning, and Yann Quilcaille. “Data - Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages.” Zenodo, 2025. <a href=\"https://doi.org/10.5281/ZENODO.13988679\">https://doi.org/10.5281/ZENODO.13988679</a>.","ista":"Hwong Y-L, Byers E, Werning M, Quilcaille Y. 2025. Data - Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages, Zenodo, <a href=\"https://doi.org/10.5281/ZENODO.13988679\">10.5281/ZENODO.13988679</a>.","mla":"Hwong, Yi-Ling, et al. <i>Data - Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages</i>. Zenodo, 2025, doi:<a href=\"https://doi.org/10.5281/ZENODO.13988679\">10.5281/ZENODO.13988679</a>.","short":"Y.-L. Hwong, E. Byers, M. Werning, Y. Quilcaille, (2025).","ieee":"Y.-L. Hwong, E. Byers, M. Werning, and Y. Quilcaille, “Data - Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages.” Zenodo, 2025."},"year":"2025","publisher":"Zenodo","abstract":[{"text":"This repository contains the data and scripts required to reproduce the results of the manuscript \"Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages\" submitted to the Environmental Research Climate Journal (ERCL). ","lang":"eng"}],"day":"21","article_processing_charge":"No","project":[{"grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"tmp":{"short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"department":[{"_id":"CaMu"}],"oa":1,"OA_type":"green","author":[{"full_name":"Hwong, Yi-Ling","last_name":"Hwong","first_name":"Yi-Ling","id":"1217aa61-4dd1-11ec-9ac3-f2ba3f17ee22","orcid":"0000-0001-9281-3479"},{"last_name":"Byers","first_name":"Edward","full_name":"Byers, Edward"},{"full_name":"Werning, Michaela","first_name":"Michaela","last_name":"Werning"},{"full_name":"Quilcaille, Yann","first_name":"Yann","last_name":"Quilcaille"}],"oa_version":"Published Version","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"20098"}]},"ddc":["550"],"status":"public","title":"Data - Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages","doi":"10.5281/ZENODO.13988679","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.15409324"}],"corr_author":"1","date_updated":"2025-08-04T07:46:33Z","type":"research_data_reference"}]