[{"fulldoi":"https://doi.org/10.1002/ece3.1289","date_published":"2014-11-27T00:00:00Z","file_date_updated":"2020-07-14T12:45:25Z","has_accepted_license":"1","article_processing_charge":"No","year":"2014","quality_controlled":"1","publication_status":"published","intvolume":"         4","ddc":["570"],"tmp":{"image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"volume":4,"file":[{"file_id":"4946","file_name":"IST-2016-462-v1+1_Novak-2014-Ecology_and_Evolution.pdf","content_type":"application/pdf","date_updated":"2020-07-14T12:45:25Z","file_size":118813,"checksum":"9ab43db1b0fede7bfe560ed77e177b76","date_created":"2018-12-12T10:12:28Z","access_level":"open_access","creator":"system","relation":"main_file"}],"doi":"10.1002/ece3.1289","isi":1,"external_id":{"isi":["000346736200003"]},"department":[{"_id":"NiBa"}],"month":"11","publisher":"Wiley-Blackwell","day":"27","pubrep_id":"462","corr_author":"1","oa":1,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_updated":"2026-07-29T11:27:43Z","related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"1125"}]},"license":"https://creativecommons.org/licenses/by/4.0/","project":[{"_id":"25B07788-B435-11E9-9278-68D0E5697425","name":"Limits to selection in biology and in evolutionary computation","call_identifier":"FP7","grant_number":"250152"}],"page":"4589 - 4597","citation":{"chicago":"Novak, Sebastian. “Habitat Heterogeneities versus Spatial Type Frequency Variances as Driving Forces of Dispersal Evolution.” <i>Ecology and Evolution</i>. Wiley-Blackwell, 2014. <a href=\"https://doi.org/10.1002/ece3.1289\">https://doi.org/10.1002/ece3.1289</a>.","apa":"Novak, S. (2014). Habitat heterogeneities versus spatial type frequency variances as driving forces of dispersal evolution. <i>Ecology and Evolution</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1002/ece3.1289\">https://doi.org/10.1002/ece3.1289</a>","mla":"Novak, Sebastian. “Habitat Heterogeneities versus Spatial Type Frequency Variances as Driving Forces of Dispersal Evolution.” <i>Ecology and Evolution</i>, vol. 4, no. 24, Wiley-Blackwell, 2014, pp. 4589–97, doi:<a href=\"https://doi.org/10.1002/ece3.1289\">10.1002/ece3.1289</a>.","ama":"Novak S. Habitat heterogeneities versus spatial type frequency variances as driving forces of dispersal evolution. <i>Ecology and Evolution</i>. 2014;4(24):4589-4597. doi:<a href=\"https://doi.org/10.1002/ece3.1289\">10.1002/ece3.1289</a>","ieee":"S. Novak, “Habitat heterogeneities versus spatial type frequency variances as driving forces of dispersal evolution,” <i>Ecology and Evolution</i>, vol. 4, no. 24. Wiley-Blackwell, pp. 4589–4597, 2014.","short":"S. Novak, Ecology and Evolution 4 (2014) 4589–4597.","ista":"Novak S. 2014. Habitat heterogeneities versus spatial type frequency variances as driving forces of dispersal evolution. Ecology and Evolution. 4(24), 4589–4597."},"oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"Understanding the evolution of dispersal is essential for understanding and predicting the dynamics of natural populations. Two main factors are known to influence dispersal evolution: spatio-temporal variation in the environment and relatedness between individuals. However, the relation between these factors is still poorly understood, and they are usually treated separately. In this article, I present a theoretical framework that contains and connects effects of both environmental variation and relatedness, and reproduces and extends their known features. Spatial habitat variation selects for balanced dispersal strategies, whereby the population is kept at an ideal free distribution. Within this class of dispersal strategies, I explain how increased dispersal is promoted by perturbations to the dispersal type frequencies. An explicit formula shows the magnitude of the selective advantage of increased dispersal in terms of the spatial variability in the frequencies of the different dispersal strategies present. These variances are capable of capturing various sources of stochasticity and hence establish a common scale for their effects on the evolution of dispersal. The results furthermore indicate an alternative approach to identifying effects of relatedness on dispersal evolution."}],"_id":"2023","title":"Habitat heterogeneities versus spatial type frequency variances as driving forces of dispersal evolution","status":"public","author":[{"last_name":"Novak","first_name":"Sebastian","id":"461468AE-F248-11E8-B48F-1D18A9856A87","full_name":"Novak, Sebastian","orcid":"0000-0002-2519-824X"}],"date_created":"2018-12-11T11:55:16Z","language":[{"iso":"eng"}],"publist_id":"5049","ec_funded":1,"publication":"Ecology and Evolution","issue":"24","scopus_import":"1"},{"das_tickbox":"1","fulldoi":"https://doi.org/10.1002/2013wr015044","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1002/2013WR015044"}],"date_published":"2014-04-01T00:00:00Z","article_processing_charge":"No","publication_status":"published","year":"2014","quality_controlled":"1","intvolume":"        50","volume":50,"doi":"10.1002/2013wr015044","publisher":"American Geophysical Union","month":"04","day":"01","oa":1,"date_updated":"2026-08-06T08:11:01Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"3275-3294","citation":{"short":"S. Fatichi, V.Y. Ivanov, Water Resources Research 50 (2014) 3275–3294.","ieee":"S. Fatichi and V. Y. Ivanov, “Interannual variability of evapotranspiration and vegetation productivity,” <i>Water Resources Research</i>, vol. 50, no. 4. American Geophysical Union, pp. 3275–3294, 2014.","ista":"Fatichi S, Ivanov VY. 2014. Interannual variability of evapotranspiration and vegetation productivity. Water Resources Research. 50(4), 3275–3294.","ama":"Fatichi S, Ivanov VY. Interannual variability of evapotranspiration and vegetation productivity. <i>Water Resources Research</i>. 2014;50(4):3275-3294. doi:<a href=\"https://doi.org/10.1002/2013wr015044\">10.1002/2013wr015044</a>","mla":"Fatichi, Simone, and Valeriy Y. Ivanov. “Interannual Variability of Evapotranspiration and Vegetation Productivity.” <i>Water Resources Research</i>, vol. 50, no. 4, American Geophysical Union, 2014, pp. 3275–94, doi:<a href=\"https://doi.org/10.1002/2013wr015044\">10.1002/2013wr015044</a>.","apa":"Fatichi, S., &#38; Ivanov, V. Y. (2014). Interannual variability of evapotranspiration and vegetation productivity. <i>Water Resources Research</i>. American Geophysical Union. <a href=\"https://doi.org/10.1002/2013wr015044\">https://doi.org/10.1002/2013wr015044</a>","chicago":"Fatichi, Simone, and Valeriy Y. Ivanov. “Interannual Variability of Evapotranspiration and Vegetation Productivity.” <i>Water Resources Research</i>. American Geophysical Union, 2014. <a href=\"https://doi.org/10.1002/2013wr015044\">https://doi.org/10.1002/2013wr015044</a>."},"oa_version":"Published Version","type":"journal_article","article_type":"original","extern":"1","abstract":[{"lang":"eng","text":"Interannual variability of precipitation can influence components of the hydrological budget, affecting them directly and indirectly through adjustments in vegetation structure and function. We investigate the effects of fluctuations of annual precipitation on ecohydrological dynamics. Specifically, we use the advanced weather generator, AWE‐GEN, to simulate 200 years of hourly meteorological forcing obtained by imposing four types of precipitation annual process with identical long‐term mean. The generated time series force a mechanistic ecohydrological model, Tethys‐Chloris. Simulations with perturbed precipitation variability are performed for four locations characterized by different vegetation cover and climate. The results indicate that long‐term transpiration (T) and evapotranspiration (ET) fluxes as well as vegetation productivity expressed as Gross Primary Production (GPP) and Aboveground Net Primary Production (ANPP) are essentially unaffected by the imposed climate fluctuations. This finding supports the hypothesis of a relative insensitivity, except for water‐limited environments, of interannual evapotranspiration and vegetation productivity to annual climatic fluctuations, which are mostly reflected in the fluxes of deep leakage and runoff. The occurrence of short periods of favorable meteorological conditions randomly taking place within the year was found to be a better explanatory variable for interannual variability of ET and ANPP than average annual or growing season conditions. The results indicated that local, single‐site sensitivities are considerably smaller than those observed across climatic and vegetation spatial gradients and thus an important role of ecosystem reorganization in modifying ANPP and ET sensitivity in a changing climate is recognized."}],"title":"Interannual variability of evapotranspiration and vegetation productivity","_id":"22547","author":[{"first_name":"Simone","last_name":"Fatichi","id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6","full_name":"Fatichi, Simone"},{"last_name":"Ivanov","first_name":"Valeriy Y.","full_name":"Ivanov, Valeriy Y."}],"status":"public","date_created":"2026-07-27T12:30:24Z","language":[{"iso":"eng"}],"OA_place":"publisher","OA_type":"free access","publication_identifier":{"issn":["0043-1397"],"eissn":["1944-7973"]},"publication":"Water Resources Research","scopus_import":"1","issue":"4"},{"intvolume":"       201","publication_status":"published","year":"2014","quality_controlled":"1","pmid":1,"article_processing_charge":"No","date_published":"2014-03-01T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1111/nph.12614"}],"das_tickbox":"1","fulldoi":"https://doi.org/10.1111/nph.12614","oa":1,"day":"01","publisher":"Wiley","month":"03","external_id":{"pmid":["24261587"]},"doi":"10.1111/nph.12614","volume":201,"author":[{"full_name":"Fatichi, Simone","id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6","first_name":"Simone","last_name":"Fatichi"},{"full_name":"Leuzinger, Sebastian","first_name":"Sebastian","last_name":"Leuzinger"},{"full_name":"Körner, Christian","last_name":"Körner","first_name":"Christian"}],"status":"public","date_created":"2026-07-27T12:30:24Z","title":"Moving beyond photosynthesis: from carbon source to sink‐driven vegetation modeling","_id":"22541","extern":"1","type":"journal_article","oa_version":"Published Version","article_type":"letter_note","page":"1086-1095","citation":{"ista":"Fatichi S, Leuzinger S, Körner C. 2014. Moving beyond photosynthesis: from carbon source to sink‐driven vegetation modeling. New Phytologist. 201(4), 1086–1095.","short":"S. Fatichi, S. Leuzinger, C. Körner, New Phytologist 201 (2014) 1086–1095.","ieee":"S. Fatichi, S. Leuzinger, and C. Körner, “Moving beyond photosynthesis: from carbon source to sink‐driven vegetation modeling,” <i>New Phytologist</i>, vol. 201, no. 4. Wiley, pp. 1086–1095, 2014.","ama":"Fatichi S, Leuzinger S, Körner C. Moving beyond photosynthesis: from carbon source to sink‐driven vegetation modeling. <i>New Phytologist</i>. 2014;201(4):1086-1095. doi:<a href=\"https://doi.org/10.1111/nph.12614\">10.1111/nph.12614</a>","mla":"Fatichi, Simone, et al. “Moving beyond Photosynthesis: From Carbon Source to Sink‐driven Vegetation Modeling.” <i>New Phytologist</i>, vol. 201, no. 4, Wiley, 2014, pp. 1086–95, doi:<a href=\"https://doi.org/10.1111/nph.12614\">10.1111/nph.12614</a>.","apa":"Fatichi, S., Leuzinger, S., &#38; Körner, C. (2014). Moving beyond photosynthesis: from carbon source to sink‐driven vegetation modeling. <i>New Phytologist</i>. Wiley. <a href=\"https://doi.org/10.1111/nph.12614\">https://doi.org/10.1111/nph.12614</a>","chicago":"Fatichi, Simone, Sebastian Leuzinger, and Christian Körner. “Moving beyond Photosynthesis: From Carbon Source to Sink‐driven Vegetation Modeling.” <i>New Phytologist</i>. Wiley, 2014. <a href=\"https://doi.org/10.1111/nph.12614\">https://doi.org/10.1111/nph.12614</a>."},"date_updated":"2026-08-06T08:12:29Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","issue":"4","publication":"New Phytologist","publication_identifier":{"eissn":["1469-8137"],"issn":["0028-646X"]},"OA_type":"free access","OA_place":"publisher","language":[{"iso":"eng"}]},{"fulldoi":"https://doi.org/10.1016/j.envsci.2013.11.005","das_tickbox":"1","date_published":"2014-11-01T00:00:00Z","keyword":["Climate change impacts","Adaptation","Water governance","Water management","Rhone basin","Switzerland"],"article_processing_charge":"No","year":"2014","quality_controlled":"1","publication_status":"published","intvolume":"        43","volume":43,"doi":"10.1016/j.envsci.2013.11.005","month":"11","publisher":"Elsevier","day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-08-06T08:21:08Z","page":"56-67","citation":{"apa":"Clarvis, M. H., Fatichi, S., Allan, A., Fuhrer, J., Stoffel, M., Romerio, F., … Toreti, A. (2014). Governing and managing water resources under changing hydro-climatic contexts: The case of the upper Rhone basin. <i>Environmental Science &#38; Policy</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.envsci.2013.11.005\">https://doi.org/10.1016/j.envsci.2013.11.005</a>","chicago":"Clarvis, Margot Hill, Simone Fatichi, Andrew Allan, Jürg Fuhrer, Markus Stoffel, Franco Romerio, Ludovic Gaudard, et al. “Governing and Managing Water Resources under Changing Hydro-Climatic Contexts: The Case of the Upper Rhone Basin.” <i>Environmental Science &#38; Policy</i>. Elsevier, 2014. <a href=\"https://doi.org/10.1016/j.envsci.2013.11.005\">https://doi.org/10.1016/j.envsci.2013.11.005</a>.","short":"M.H. Clarvis, S. Fatichi, A. Allan, J. Fuhrer, M. Stoffel, F. Romerio, L. Gaudard, P. Burlando, M. Beniston, E. Xoplaki, A. Toreti, Environmental Science &#38; Policy 43 (2014) 56–67.","ieee":"M. H. Clarvis <i>et al.</i>, “Governing and managing water resources under changing hydro-climatic contexts: The case of the upper Rhone basin,” <i>Environmental Science &#38; Policy</i>, vol. 43. Elsevier, pp. 56–67, 2014.","ista":"Clarvis MH, Fatichi S, Allan A, Fuhrer J, Stoffel M, Romerio F, Gaudard L, Burlando P, Beniston M, Xoplaki E, Toreti A. 2014. Governing and managing water resources under changing hydro-climatic contexts: The case of the upper Rhone basin. Environmental Science &#38; Policy. 43, 56–67.","mla":"Clarvis, Margot Hill, et al. “Governing and Managing Water Resources under Changing Hydro-Climatic Contexts: The Case of the Upper Rhone Basin.” <i>Environmental Science &#38; Policy</i>, vol. 43, Elsevier, 2014, pp. 56–67, doi:<a href=\"https://doi.org/10.1016/j.envsci.2013.11.005\">10.1016/j.envsci.2013.11.005</a>.","ama":"Clarvis MH, Fatichi S, Allan A, et al. Governing and managing water resources under changing hydro-climatic contexts: The case of the upper Rhone basin. <i>Environmental Science &#38; Policy</i>. 2014;43:56-67. doi:<a href=\"https://doi.org/10.1016/j.envsci.2013.11.005\">10.1016/j.envsci.2013.11.005</a>"},"article_type":"original","type":"journal_article","oa_version":"None","extern":"1","abstract":[{"lang":"eng","text":"Climate change represents a major increase in uncertainty that water managers and policy makers will need to integrate into water resources policy and management. A certain level of uncertainty has always existed in water resources planning, but the speed and intensity of changes in baseline conditions that climate change embodies might require a shift in perspective. This article draws on both the social and physical science results of the EU-FP7 ACQWA project to better understand the challenges and opportunities for adaptation to climate change impacts on the hydrology of the upper Rhone basin in the Canton Valais, Switzerland. It first presents the results of hydro-climatic change projections downscaled to more temporally and spatially-relevant frames of reference for decision makers. Then, it analyses the current policy and legislative framework within which these changes will take place, according to the policy coherence across different water-relevant frameworks as well as the integration and mainstreaming of climate change. It compares the current policy and legislative frameworks for different aspects of water resources management to the projected impacts of climate change on the hydrology of the upper Rhone basin, in order to examine the appropriateness of the current approach for responding to a changing climatic context. Significant uncertainties pose numerous challenges in the governance context. The study draws on adaptive governance principles, to propose policy actions across different scales of governance to better manage baseline variability as well as more ‘unpredictable’ uncertainty from climate change impacts."}],"_id":"22545","title":"Governing and managing water resources under changing hydro-climatic contexts: The case of the upper Rhone basin","status":"public","date_created":"2026-07-27T12:30:24Z","author":[{"full_name":"Clarvis, Margot Hill","last_name":"Clarvis","first_name":"Margot Hill"},{"full_name":"Fatichi, Simone","id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6","last_name":"Fatichi","first_name":"Simone"},{"full_name":"Allan, Andrew","first_name":"Andrew","last_name":"Allan"},{"full_name":"Fuhrer, Jürg","first_name":"Jürg","last_name":"Fuhrer"},{"first_name":"Markus","last_name":"Stoffel","full_name":"Stoffel, Markus"},{"full_name":"Romerio, Franco","first_name":"Franco","last_name":"Romerio"},{"full_name":"Gaudard, Ludovic","last_name":"Gaudard","first_name":"Ludovic"},{"full_name":"Burlando, Paolo","last_name":"Burlando","first_name":"Paolo"},{"first_name":"Martin","last_name":"Beniston","full_name":"Beniston, Martin"},{"full_name":"Xoplaki, Elena","first_name":"Elena","last_name":"Xoplaki"},{"full_name":"Toreti, Andrea","first_name":"Andrea","last_name":"Toreti"}],"language":[{"iso":"eng"}],"OA_type":"closed access","publication_identifier":{"eissn":["1873-6416"],"issn":["1462-9011"]},"publication":"Environmental Science & Policy","scopus_import":"1"},{"intvolume":"        50","publication_status":"published","quality_controlled":"1","year":"2014","article_processing_charge":"No","date_published":"2014-01-01T00:00:00Z","main_file_link":[{"url":"https://doi.org/10.1002/2013WR014535","open_access":"1"}],"das_tickbox":"1","fulldoi":"https://doi.org/10.1002/2013wr014535","oa":1,"day":"01","publisher":"American Geophysical Union","month":"01","doi":"10.1002/2013wr014535","volume":50,"author":[{"id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6","first_name":"Simone","last_name":"Fatichi","full_name":"Fatichi, Simone"},{"full_name":"Zeeman, Matthias J.","first_name":"Matthias J.","last_name":"Zeeman"},{"full_name":"Fuhrer, Jürg","last_name":"Fuhrer","first_name":"Jürg"},{"last_name":"Burlando","first_name":"Paolo","full_name":"Burlando, Paolo"}],"status":"public","date_created":"2026-07-27T12:30:24Z","title":"Ecohydrological effects of management on subalpine grasslands: From local to catchment scale","_id":"22560","extern":"1","abstract":[{"text":"Grassland and pastures are important land uses in subalpine and alpine environments. They are typically subjected to management practices that can change the biophysical structure of the canopy through defoliation and can alter soil hydraulic properties. These modifications have the potential to impact hydrological and energy fluxes as well as the primary productivity of grasslands. We investigate how a series of management practices, such as grass cut, grazing, and the consequent soil compaction due to treading by animals are affecting water resources, flood generation, and grassland productivity in a subalpine region. Results are obtained using a mechanistic ecohydrological model, Tethys-Chloris. The model is first confirmed using energy, water, and carbon fluxes measured at three eddy covariance stations over grasslands in Switzerland and discharge measured in a small experimental catchment. A series of virtual experiments are then designed to elucidate the importance of various management scenarios at the plot and catchment scales. Results show that only severe management actions such as low grass cuts or heavy grazing are able to influence considerably the long-term hydrological behavior. Moderate management practices are typically unable to modify the system response in terms of energy and water fluxes. An important short-term effect is represented by animal-induced soil compaction that can reduce infiltration capacity leading to peak flow considerably higher than in undisturbed conditions. The productivity of vegetation in absence of nutrient limitation is considerably affected by the different management scenarios with tolerable disturbances that lead to higher aboveground net primary production.","lang":"eng"}],"oa_version":"Published Version","type":"journal_article","article_type":"original","citation":{"chicago":"Fatichi, Simone, Matthias J. Zeeman, Jürg Fuhrer, and Paolo Burlando. “Ecohydrological Effects of Management on Subalpine Grasslands: From Local to Catchment Scale.” <i>Water Resources Research</i>. American Geophysical Union, 2014. <a href=\"https://doi.org/10.1002/2013wr014535\">https://doi.org/10.1002/2013wr014535</a>.","apa":"Fatichi, S., Zeeman, M. J., Fuhrer, J., &#38; Burlando, P. (2014). Ecohydrological effects of management on subalpine grasslands: From local to catchment scale. <i>Water Resources Research</i>. American Geophysical Union. <a href=\"https://doi.org/10.1002/2013wr014535\">https://doi.org/10.1002/2013wr014535</a>","ama":"Fatichi S, Zeeman MJ, Fuhrer J, Burlando P. Ecohydrological effects of management on subalpine grasslands: From local to catchment scale. <i>Water Resources Research</i>. 2014;50(1):148-164. doi:<a href=\"https://doi.org/10.1002/2013wr014535\">10.1002/2013wr014535</a>","mla":"Fatichi, Simone, et al. “Ecohydrological Effects of Management on Subalpine Grasslands: From Local to Catchment Scale.” <i>Water Resources Research</i>, vol. 50, no. 1, American Geophysical Union, 2014, pp. 148–64, doi:<a href=\"https://doi.org/10.1002/2013wr014535\">10.1002/2013wr014535</a>.","ista":"Fatichi S, Zeeman MJ, Fuhrer J, Burlando P. 2014. Ecohydrological effects of management on subalpine grasslands: From local to catchment scale. Water Resources Research. 50(1), 148–164.","ieee":"S. Fatichi, M. J. Zeeman, J. Fuhrer, and P. Burlando, “Ecohydrological effects of management on subalpine grasslands: From local to catchment scale,” <i>Water Resources Research</i>, vol. 50, no. 1. American Geophysical Union, pp. 148–164, 2014.","short":"S. Fatichi, M.J. Zeeman, J. Fuhrer, P. Burlando, Water Resources Research 50 (2014) 148–164."},"page":"148-164","date_updated":"2026-08-06T09:48:24Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","scopus_import":"1","issue":"1","publication":"Water Resources Research","publication_identifier":{"issn":["0043-1397"],"eissn":["1944-7973"]},"OA_type":"free access","OA_place":"publisher","language":[{"iso":"eng"}]},{"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_updated":"2026-08-10T12:09:26Z","citation":{"chicago":"Paschalis, Athanasios, Simone Fatichi, Peter Molnar, Stefan Rimkus, and Paolo Burlando. “On the Effects of Small Scale Space–Time Variability of Rainfall on Basin Flood Response.” <i>Journal of Hydrology</i>. Elsevier, 2014. <a href=\"https://doi.org/10.1016/j.jhydrol.2014.04.014\">https://doi.org/10.1016/j.jhydrol.2014.04.014</a>.","apa":"Paschalis, A., Fatichi, S., Molnar, P., Rimkus, S., &#38; Burlando, P. (2014). On the effects of small scale space–time variability of rainfall on basin flood response. <i>Journal of Hydrology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jhydrol.2014.04.014\">https://doi.org/10.1016/j.jhydrol.2014.04.014</a>","ama":"Paschalis A, Fatichi S, Molnar P, Rimkus S, Burlando P. On the effects of small scale space–time variability of rainfall on basin flood response. <i>Journal of Hydrology</i>. 2014;514:313-327. doi:<a href=\"https://doi.org/10.1016/j.jhydrol.2014.04.014\">10.1016/j.jhydrol.2014.04.014</a>","mla":"Paschalis, Athanasios, et al. “On the Effects of Small Scale Space–Time Variability of Rainfall on Basin Flood Response.” <i>Journal of Hydrology</i>, vol. 514, Elsevier, 2014, pp. 313–27, doi:<a href=\"https://doi.org/10.1016/j.jhydrol.2014.04.014\">10.1016/j.jhydrol.2014.04.014</a>.","ieee":"A. Paschalis, S. Fatichi, P. Molnar, S. Rimkus, and P. Burlando, “On the effects of small scale space–time variability of rainfall on basin flood response,” <i>Journal of Hydrology</i>, vol. 514. Elsevier, pp. 313–327, 2014.","ista":"Paschalis A, Fatichi S, Molnar P, Rimkus S, Burlando P. 2014. On the effects of small scale space–time variability of rainfall on basin flood response. Journal of Hydrology. 514, 313–327.","short":"A. Paschalis, S. Fatichi, P. Molnar, S. Rimkus, P. Burlando, Journal of Hydrology 514 (2014) 313–327."},"page":"313-327","article_type":"original","oa_version":"None","type":"journal_article","abstract":[{"lang":"eng","text":"The spatio-temporal variability of rainfall, especially at fine temporal and spatial scales can significantly affect flood generation, leading to a large variability in the flood response and uncertainty in its prediction. In this study we quantify the impact of rainfall spatial and temporal structure on the catchment hydrological response based on a numerical experiment. Rainfall ensembles generated using a state-of-the-art space–time stochastic model are used as input into a distributed process-based hydrological model. The sensitivity of the hydrograph to several structural characteristics of storm rainfall for three soil moisture initial conditions is numerically assessed at the basin outlet of an Alpine catchment in central Switzerland. The results highlight that the flood response is strongly affected by the temporal correlation of rainfall and to a lesser extent by its spatial variability. Initial soil moisture conditions play a paramount role in mediating the response. We identify the underlying mechanistic explanations in terms of runoff generation and connectivity of saturated areas that determine the sensitivity of flood response to the spatio-temporal variability of rainfall. We show that the element that mostly influences both the flood peak and the time of peak occurrence is the clustering of saturated areas in the catchment which leads to local enhanced runoff."}],"extern":"1","_id":"22577","title":"On the effects of small scale space–time variability of rainfall on basin flood response","author":[{"last_name":"Paschalis","first_name":"Athanasios","full_name":"Paschalis, Athanasios"},{"full_name":"Fatichi, Simone","first_name":"Simone","last_name":"Fatichi","id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6"},{"last_name":"Molnar","first_name":"Peter","full_name":"Molnar, Peter"},{"first_name":"Stefan","last_name":"Rimkus","full_name":"Rimkus, Stefan"},{"first_name":"Paolo","last_name":"Burlando","full_name":"Burlando, Paolo"}],"date_created":"2026-07-27T12:30:25Z","status":"public","language":[{"iso":"eng"}],"OA_type":"closed access","publication_identifier":{"issn":["0022-1694"],"eissn":["1879-2707"]},"publication":"Journal of Hydrology","scopus_import":"1","fulldoi":"https://doi.org/10.1016/j.jhydrol.2014.04.014","das_tickbox":"1","date_published":"2014-06-06T00:00:00Z","keyword":["Flood response","Hydrological modeling","Stochastic rainfall modeling","STREAP"],"article_processing_charge":"No","quality_controlled":"1","year":"2014","publication_status":"published","intvolume":"       514","volume":514,"doi":"10.1016/j.jhydrol.2014.04.014","month":"06","publisher":"Elsevier","day":"06"},{"page":"152-166","citation":{"apa":"Paschalis, A., Molnar, P., Fatichi, S., &#38; Burlando, P. (2014). On temporal stochastic modeling of precipitation, nesting models across scales. <i>Advances in Water Resources</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.advwatres.2013.11.006\">https://doi.org/10.1016/j.advwatres.2013.11.006</a>","chicago":"Paschalis, Athanasios, Peter Molnar, Simone Fatichi, and Paolo Burlando. “On Temporal Stochastic Modeling of Precipitation, Nesting Models across Scales.” <i>Advances in Water Resources</i>. Elsevier, 2014. <a href=\"https://doi.org/10.1016/j.advwatres.2013.11.006\">https://doi.org/10.1016/j.advwatres.2013.11.006</a>.","ieee":"A. Paschalis, P. Molnar, S. Fatichi, and P. Burlando, “On temporal stochastic modeling of precipitation, nesting models across scales,” <i>Advances in Water Resources</i>, vol. 63. Elsevier, pp. 152–166, 2014.","ista":"Paschalis A, Molnar P, Fatichi S, Burlando P. 2014. On temporal stochastic modeling of precipitation, nesting models across scales. Advances in Water Resources. 63, 152–166.","short":"A. Paschalis, P. Molnar, S. Fatichi, P. Burlando, Advances in Water Resources 63 (2014) 152–166.","ama":"Paschalis A, Molnar P, Fatichi S, Burlando P. On temporal stochastic modeling of precipitation, nesting models across scales. <i>Advances in Water Resources</i>. 2014;63:152-166. doi:<a href=\"https://doi.org/10.1016/j.advwatres.2013.11.006\">10.1016/j.advwatres.2013.11.006</a>","mla":"Paschalis, Athanasios, et al. “On Temporal Stochastic Modeling of Precipitation, Nesting Models across Scales.” <i>Advances in Water Resources</i>, vol. 63, Elsevier, 2014, pp. 152–66, doi:<a href=\"https://doi.org/10.1016/j.advwatres.2013.11.006\">10.1016/j.advwatres.2013.11.006</a>."},"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_updated":"2026-08-10T11:55:17Z","_id":"22575","title":"On temporal stochastic modeling of precipitation, nesting models across scales","author":[{"full_name":"Paschalis, Athanasios","last_name":"Paschalis","first_name":"Athanasios"},{"full_name":"Molnar, Peter","first_name":"Peter","last_name":"Molnar"},{"id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6","first_name":"Simone","last_name":"Fatichi","full_name":"Fatichi, Simone"},{"full_name":"Burlando, Paolo","last_name":"Burlando","first_name":"Paolo"}],"date_created":"2026-07-27T12:30:25Z","status":"public","article_type":"original","oa_version":"None","type":"journal_article","abstract":[{"lang":"eng","text":"We analyze the performance of composite stochastic models of temporal precipitation which can satisfactorily reproduce precipitation properties across a wide range of temporal scales. The rationale is that a combination of stochastic precipitation models which are most appropriate for specific limited temporal scales leads to better overall performance across a wider range of scales than single models alone. We investigate different model combinations. For the coarse (daily) scale these are models based on Alternating renewal processes, Markov chains, and Poisson cluster models, which are then combined with a microcanonical Multiplicative Random Cascade model to disaggregate precipitation to finer (minute) scales. The composite models were tested on data at four sites in different climates. The results show that model combinations improve the performance in key statistics such as probability distributions of precipitation depth, autocorrelation structure, intermittency, reproduction of extremes, compared to single models. At the same time they remain reasonably parsimonious. No model combination was found to outperform the others at all sites and for all statistics, however we provide insight on the capabilities of specific model combinations. The results for the four different climates are similar, which suggests a degree of generality and wider applicability of the approach."}],"extern":"1","OA_type":"closed access","language":[{"iso":"eng"}],"publication":"Advances in Water Resources","scopus_import":"1","publication_identifier":{"issn":["0309-1708"]},"date_published":"2014-01-01T00:00:00Z","keyword":["Stochastic rainfall models","Poisson cluster model","Multiplicative Random Cascade","Markov chain","Alternating renewal process"],"article_processing_charge":"No","fulldoi":"https://doi.org/10.1016/j.advwatres.2013.11.006","das_tickbox":"1","year":"2014","quality_controlled":"1","publication_status":"published","intvolume":"        63","volume":63,"doi":"10.1016/j.advwatres.2013.11.006","day":"01","month":"01","publisher":"Elsevier"},{"abstract":[{"text":" In rapidly changing environments, selection history may impact the dynamics of adaptation. Mutations selected in one environment may result in pleiotropic fitness trade-offs in subsequent novel environments, slowing the rates of adaptation. Epistatic interactions between mutations selected in sequential stressful environments may slow or accelerate subsequent rates of adaptation, depending on the nature of that interaction. We explored the dynamics of adaptation during sequential exposure to herbicides with different modes of action in Chlamydomonas reinhardtii. Evolution of resistance to two of the herbicides was largely independent of selection history. For carbetamide, previous adaptation to other herbicide modes of action positively impacted the likelihood of adaptation to this herbicide. Furthermore, while adaptation to all individual herbicides was associated with pleiotropic fitness costs in stress-free environments, we observed that accumulation of resistance mechanisms was accompanied by a reduction in overall fitness costs. We suggest that antagonistic epistasis may be a driving mechanism that enables populations to more readily adapt in novel environments. These findings highlight the potential for sequences of xenobiotics to facilitate the rapid evolution of multiple-drug and -pesticide resistance, as well as the potential for epistatic interactions between adaptive mutations to facilitate evolutionary rescue in rapidly changing environments. ","lang":"eng"}],"type":"journal_article","oa_version":"Submitted Version","date_created":"2018-12-11T11:55:21Z","status":"public","author":[{"full_name":"Lagator, Mato","first_name":"Mato","last_name":"Lagator","id":"345D25EC-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Nick","last_name":"Colegrave","full_name":"Colegrave, Nick"},{"last_name":"Neve","first_name":"Paul","full_name":"Neve, Paul"}],"title":"Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses","_id":"2036","date_updated":"2026-08-12T06:26:10Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"apa":"Lagator, M., Colegrave, N., &#38; Neve, P. (2014). Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. Royal Society. <a href=\"https://doi.org/10.1098/rspb.2014.1679\">https://doi.org/10.1098/rspb.2014.1679</a>","chicago":"Lagator, Mato, Nick Colegrave, and Paul Neve. “Selection History and Epistatic Interactions Impact Dynamics of Adaptation to Novel Environmental Stresses.” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. Royal Society, 2014. <a href=\"https://doi.org/10.1098/rspb.2014.1679\">https://doi.org/10.1098/rspb.2014.1679</a>.","ista":"Lagator M, Colegrave N, Neve P. 2014. Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Proceedings of the Royal Society of London Series B Biological Sciences. 281(1794), 20141679.","short":"M. Lagator, N. Colegrave, P. Neve, Proceedings of the Royal Society of London Series B Biological Sciences 281 (2014).","ieee":"M. Lagator, N. Colegrave, and P. Neve, “Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses,” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>, vol. 281, no. 1794. Royal Society, 2014.","mla":"Lagator, Mato, et al. “Selection History and Epistatic Interactions Impact Dynamics of Adaptation to Novel Environmental Stresses.” <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>, vol. 281, no. 1794, 20141679, Royal Society, 2014, doi:<a href=\"https://doi.org/10.1098/rspb.2014.1679\">10.1098/rspb.2014.1679</a>.","ama":"Lagator M, Colegrave N, Neve P. Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. <i>Proceedings of the Royal Society of London Series B Biological Sciences</i>. 2014;281(1794). doi:<a href=\"https://doi.org/10.1098/rspb.2014.1679\">10.1098/rspb.2014.1679</a>"},"related_material":{"record":[{"status":"public","id":"9741","relation":"research_data"}]},"acknowledgement":"The project was supported by Leverhulme Trust.","scopus_import":"1","issue":"1794","publication":"Proceedings of the Royal Society of London Series B Biological Sciences","language":[{"iso":"eng"}],"publist_id":"5019","intvolume":"       281","publication_status":"published","year":"2014","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4211454/"}],"fulldoi":"https://doi.org/10.1098/rspb.2014.1679","article_processing_charge":"No","date_published":"2014-09-17T00:00:00Z","publisher":"Royal Society","department":[{"_id":"CaGu"}],"month":"09","external_id":{"isi":["000341922700009"]},"oa":1,"day":"17","doi":"10.1098/rspb.2014.1679","volume":281,"isi":1,"article_number":"20141679"},{"main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.85dn7"}],"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","fulldoi":"https://doi.org/10.5061/dryad.85dn7","date_updated":"2026-08-12T06:26:09Z","article_processing_charge":"No","citation":{"apa":"Lagator, M., Colegrave, N., &#38; Neve, P. (2014). Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Dryad. <a href=\"https://doi.org/10.5061/dryad.85dn7\">https://doi.org/10.5061/dryad.85dn7</a>","chicago":"Lagator, Mato, Nick Colegrave, and Paul Neve. “Data from: Selection History and Epistatic Interactions Impact Dynamics of Adaptation to Novel Environmental Stresses.” Dryad, 2014. <a href=\"https://doi.org/10.5061/dryad.85dn7\">https://doi.org/10.5061/dryad.85dn7</a>.","short":"M. Lagator, N. Colegrave, P. Neve, (2014).","ista":"Lagator M, Colegrave N, Neve P. 2014. Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses, Dryad, <a href=\"https://doi.org/10.5061/dryad.85dn7\">10.5061/dryad.85dn7</a>.","ieee":"M. Lagator, N. Colegrave, and P. Neve, “Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses.” Dryad, 2014.","mla":"Lagator, Mato, et al. <i>Data from: Selection History and Epistatic Interactions Impact Dynamics of Adaptation to Novel Environmental Stresses</i>. Dryad, 2014, doi:<a href=\"https://doi.org/10.5061/dryad.85dn7\">10.5061/dryad.85dn7</a>.","ama":"Lagator M, Colegrave N, Neve P. Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. 2014. doi:<a href=\"https://doi.org/10.5061/dryad.85dn7\">10.5061/dryad.85dn7</a>"},"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"2036"}]},"date_published":"2014-08-21T00:00:00Z","abstract":[{"lang":"eng","text":"In rapidly changing environments, selection history may impact the dynamics of adaptation. Mutations selected in one environment may result in pleiotropic fitness trade-offs in subsequent novel environments, slowing the rates of adaptation. Epistatic interactions between mutations selected in sequential stressful environments may slow or accelerate subsequent rates of adaptation, depending on the nature of that interaction. We explored the dynamics of adaptation during sequential exposure to herbicides with different modes of action in Chlamydomonas reinhardtii. Evolution of resistance to two of the herbicides was largely independent of selection history. For carbetamide, previous adaptation to other herbicide modes of action positively impacted the likelihood of adaptation to this herbicide. Furthermore, while adaptation to all individual herbicides was associated with pleiotropic fitness costs in stress-free environments, we observed that accumulation of resistance mechanisms was accompanied by a reduction in overall fitness costs. We suggest that antagonistic epistasis may be a driving mechanism that enables populations to more readily adapt in novel environments. These findings highlight the potential for sequences of xenobiotics to facilitate the rapid evolution of multiple-drug and -pesticide resistance, as well as the potential for epistatic interactions between adaptive mutations to facilitate evolutionary rescue in rapidly changing environments."}],"year":"2014","oa_version":"Published Version","type":"research_data_reference","status":"public","date_created":"2021-07-28T08:48:06Z","author":[{"full_name":"Lagator, Mato","id":"345D25EC-F248-11E8-B48F-1D18A9856A87","last_name":"Lagator","first_name":"Mato"},{"first_name":"Nick","last_name":"Colegrave","full_name":"Colegrave, Nick"},{"full_name":"Neve, Paul","first_name":"Paul","last_name":"Neve"}],"_id":"9741","title":"Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses","doi":"10.5061/dryad.85dn7","department":[{"_id":"CaGu"}],"month":"08","publisher":"Dryad","oa":1,"day":"21"},{"abstract":[{"lang":"eng","text":"Sharp wave/ripple (SWR, 150–250 Hz) hippocampal events have long been postulated to be involved in memory consolidation. However, more recent work has investigated SWRs that occur during active waking behaviour: findings that suggest that SWRs may also play a role in cell assembly strengthening or spatial working memory. Do such theories of SWR function apply to animal learning? This review discusses how general theories linking SWRs to memory-related function may explain circuit mechanisms related to rodent spatial learning and to the associated stabilization of new cognitive maps."}],"type":"journal_article","oa_version":"Published Version","date_created":"2018-12-11T11:56:34Z","author":[{"id":"3FA14672-F248-11E8-B48F-1D18A9856A87","first_name":"Jozsef L","last_name":"Csicsvari","orcid":"0000-0002-5193-4036","full_name":"Csicsvari, Jozsef L"},{"last_name":"Dupret","first_name":"David","full_name":"Dupret, David"}],"status":"public","_id":"2251","title":"Sharp wave/ripple network oscillations and learning-associated hippocampal maps","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-08-12T06:27:15Z","citation":{"chicago":"Csicsvari, Jozsef L, and David Dupret. “Sharp Wave/Ripple Network Oscillations and Learning-Associated Hippocampal Maps.” <i>Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences</i>. Royal Society, 2014. <a href=\"https://doi.org/10.1098/rstb.2012.0528\">https://doi.org/10.1098/rstb.2012.0528</a>.","apa":"Csicsvari, J. L., &#38; Dupret, D. (2014). Sharp wave/ripple network oscillations and learning-associated hippocampal maps. <i>Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences</i>. Royal Society. <a href=\"https://doi.org/10.1098/rstb.2012.0528\">https://doi.org/10.1098/rstb.2012.0528</a>","mla":"Csicsvari, Jozsef L., and David Dupret. “Sharp Wave/Ripple Network Oscillations and Learning-Associated Hippocampal Maps.” <i>Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences</i>, vol. 369, no. 1635, 20120528, Royal Society, 2014, doi:<a href=\"https://doi.org/10.1098/rstb.2012.0528\">10.1098/rstb.2012.0528</a>.","ama":"Csicsvari JL, Dupret D. Sharp wave/ripple network oscillations and learning-associated hippocampal maps. <i>Philosophical Transactions of the Royal Society of London Series B, Biological Sciences</i>. 2014;369(1635). doi:<a href=\"https://doi.org/10.1098/rstb.2012.0528\">10.1098/rstb.2012.0528</a>","short":"J.L. Csicsvari, D. Dupret, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 369 (2014).","ista":"Csicsvari JL, Dupret D. 2014. Sharp wave/ripple network oscillations and learning-associated hippocampal maps. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369(1635), 20120528.","ieee":"J. L. Csicsvari and D. Dupret, “Sharp wave/ripple network oscillations and learning-associated hippocampal maps,” <i>Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences</i>, vol. 369, no. 1635. Royal Society, 2014."},"license":"https://creativecommons.org/licenses/by/3.0/","publication_identifier":{"issn":["0962-8436"]},"issue":"1635","scopus_import":"1","publication":"Philosophical Transactions of the Royal Society of London. 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We focus, in particular, on the excitation spectrum of a Bose gas in the mean-field (Hartree) limit. A list of open problems will be discussed at the end.","lang":"eng"}],"_id":"1821","title":"Bose gases, Bose-Einstein condensation, and the Bogoliubov approximation","author":[{"first_name":"Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert"}],"status":"public","date_created":"2018-12-11T11:54:11Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-08-12T13:58:01Z","project":[{"_id":"26450934-B435-11E9-9278-68D0E5697425","name":"NSERC Postdoctoral fellowship"}],"citation":{"apa":"Seiringer, R. (2014). Bose gases, Bose-Einstein condensation, and the Bogoliubov approximation. <i>Journal of Mathematical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.4881536\">https://doi.org/10.1063/1.4881536</a>","chicago":"Seiringer, Robert. “Bose Gases, Bose-Einstein Condensation, and the Bogoliubov Approximation.” <i>Journal of Mathematical Physics</i>. AIP Publishing, 2014. <a href=\"https://doi.org/10.1063/1.4881536\">https://doi.org/10.1063/1.4881536</a>.","ieee":"R. Seiringer, “Bose gases, Bose-Einstein condensation, and the Bogoliubov approximation,” <i>Journal of Mathematical Physics</i>, vol. 55, no. 7. AIP Publishing, 2014.","ista":"Seiringer R. 2014. Bose gases, Bose-Einstein condensation, and the Bogoliubov approximation. Journal of Mathematical Physics. 55(7), 1.4881536.","short":"R. Seiringer, Journal of Mathematical Physics 55 (2014).","mla":"Seiringer, Robert. “Bose Gases, Bose-Einstein Condensation, and the Bogoliubov Approximation.” <i>Journal of Mathematical Physics</i>, vol. 55, no. 7, 1.4881536, AIP Publishing, 2014, doi:<a href=\"https://doi.org/10.1063/1.4881536\">10.1063/1.4881536</a>.","ama":"Seiringer R. Bose gases, Bose-Einstein condensation, and the Bogoliubov approximation. <i>Journal of Mathematical Physics</i>. 2014;55(7). doi:<a href=\"https://doi.org/10.1063/1.4881536\">10.1063/1.4881536</a>"}},{"language":[{"iso":"eng"}],"publist_id":"5284","issue":"7","scopus_import":"1","publication":"Journal of Mathematical Physics","citation":{"ista":"Jakšić V, Pillet C, Seiringer R. 2014. Introduction. Journal of Mathematical Physics. 55(7), 075101.","short":"V. Jakšić, C. Pillet, R. Seiringer, Journal of Mathematical Physics 55 (2014).","ieee":"V. Jakšić, C. Pillet, and R. Seiringer, “Introduction,” <i>Journal of Mathematical Physics</i>, vol. 55, no. 7. AIP Publishing, 2014.","ama":"Jakšić V, Pillet C, Seiringer R. Introduction. <i>Journal of Mathematical Physics</i>. 2014;55(7). doi:<a href=\"https://doi.org/10.1063/1.4884877\">10.1063/1.4884877</a>","mla":"Jakšić, Vojkan, et al. “Introduction.” <i>Journal of Mathematical Physics</i>, vol. 55, no. 7, 075101, AIP Publishing, 2014, doi:<a href=\"https://doi.org/10.1063/1.4884877\">10.1063/1.4884877</a>.","apa":"Jakšić, V., Pillet, C., &#38; Seiringer, R. (2014). Introduction. <i>Journal of Mathematical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.4884877\">https://doi.org/10.1063/1.4884877</a>","chicago":"Jakšić, Vojkan, Claude Pillet, and Robert Seiringer. “Introduction.” <i>Journal of Mathematical Physics</i>. AIP Publishing, 2014. <a href=\"https://doi.org/10.1063/1.4884877\">https://doi.org/10.1063/1.4884877</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-08-12T13:58:20Z","author":[{"full_name":"Jakšić, Vojkan","last_name":"Jakšić","first_name":"Vojkan"},{"full_name":"Pillet, Claude","last_name":"Pillet","first_name":"Claude"},{"last_name":"Seiringer","first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert"}],"date_created":"2018-12-11T11:54:12Z","status":"public","_id":"1822","title":"Introduction","type":"journal_article","oa_version":"None","article_number":"075101","isi":1,"doi":"10.1063/1.4884877","volume":55,"day":"01","month":"07","department":[{"_id":"RoSe"}],"publisher":"AIP Publishing","external_id":{"isi":["000341174600001"]},"article_processing_charge":"No","date_published":"2014-07-01T00:00:00Z","fulldoi":"https://doi.org/10.1063/1.4884877","intvolume":"        55","quality_controlled":"1","year":"2014","publication_status":"published"},{"OA_type":"closed access","language":[{"iso":"eng"}],"scopus_import":"1","publication":"Advances in Water Resources","publication_identifier":{"issn":["0309-1708"]},"citation":{"ista":"Caracciolo D, Noto LV, Istanbulluoglu E, Fatichi S, Zhou X. 2014. Climate change and Ecotone boundaries: Insights from a cellular automata ecohydrology model in a Mediterranean catchment with topography controlled vegetation patterns. Advances in Water Resources. 73, 159–175.","short":"D. Caracciolo, L.V. Noto, E. Istanbulluoglu, S. Fatichi, X. Zhou, Advances in Water Resources 73 (2014) 159–175.","ieee":"D. Caracciolo, L. V. Noto, E. Istanbulluoglu, S. Fatichi, and X. Zhou, “Climate change and Ecotone boundaries: Insights from a cellular automata ecohydrology model in a Mediterranean catchment with topography controlled vegetation patterns,” <i>Advances in Water Resources</i>, vol. 73. Elsevier, pp. 159–175, 2014.","ama":"Caracciolo D, Noto LV, Istanbulluoglu E, Fatichi S, Zhou X. Climate change and Ecotone boundaries: Insights from a cellular automata ecohydrology model in a Mediterranean catchment with topography controlled vegetation patterns. <i>Advances in Water Resources</i>. 2014;73:159-175. doi:<a href=\"https://doi.org/10.1016/j.advwatres.2014.08.001\">10.1016/j.advwatres.2014.08.001</a>","mla":"Caracciolo, Domenico, et al. “Climate Change and Ecotone Boundaries: Insights from a Cellular Automata Ecohydrology Model in a Mediterranean Catchment with Topography Controlled Vegetation Patterns.” <i>Advances in Water Resources</i>, vol. 73, Elsevier, 2014, pp. 159–75, doi:<a href=\"https://doi.org/10.1016/j.advwatres.2014.08.001\">10.1016/j.advwatres.2014.08.001</a>.","apa":"Caracciolo, D., Noto, L. V., Istanbulluoglu, E., Fatichi, S., &#38; Zhou, X. (2014). Climate change and Ecotone boundaries: Insights from a cellular automata ecohydrology model in a Mediterranean catchment with topography controlled vegetation patterns. <i>Advances in Water Resources</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.advwatres.2014.08.001\">https://doi.org/10.1016/j.advwatres.2014.08.001</a>","chicago":"Caracciolo, Domenico, Leonardo Valerio Noto, Erkan Istanbulluoglu, Simone Fatichi, and Xiaochi Zhou. “Climate Change and Ecotone Boundaries: Insights from a Cellular Automata Ecohydrology Model in a Mediterranean Catchment with Topography Controlled Vegetation Patterns.” <i>Advances in Water Resources</i>. Elsevier, 2014. <a href=\"https://doi.org/10.1016/j.advwatres.2014.08.001\">https://doi.org/10.1016/j.advwatres.2014.08.001</a>."},"page":"159-175","date_updated":"2026-08-12T14:11:56Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_created":"2026-07-27T12:30:23Z","status":"public","author":[{"first_name":"Domenico","last_name":"Caracciolo","full_name":"Caracciolo, Domenico"},{"full_name":"Noto, Leonardo Valerio","last_name":"Noto","first_name":"Leonardo Valerio"},{"full_name":"Istanbulluoglu, Erkan","first_name":"Erkan","last_name":"Istanbulluoglu"},{"full_name":"Fatichi, Simone","id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6","first_name":"Simone","last_name":"Fatichi"},{"last_name":"Zhou","first_name":"Xiaochi","full_name":"Zhou, Xiaochi"}],"title":"Climate change and Ecotone boundaries: Insights from a cellular automata ecohydrology model in a Mediterranean catchment with topography controlled vegetation patterns","_id":"22435","abstract":[{"text":"Regions of vegetation transitions (ecotones) are known to be highly sensitive to climate fluctuations. In this study, the Cellular-Automata Tree Grass Shrub Simulator (CATGraSS) has been modified, calibrated and used with downscaled future climate scenarios to examine the role of climate change on vegetation patterns in a steep mountainous catchment (1.3 km2) located in Sicily, Italy. In the catchment, north-facing slopes are mostly covered by trees and grass, and south-facing slopes by Indian Fig opuntia and grass, with grasses dominating as elevation grows. CATGraSS simulates solar radiation, evapotranspiration, and soil moisture in space and time. Each model cell can hold a single plant type or can be bare soil. Plant competition is modeled explicitly through mortality and the establishment of individual plants in open spaces. In this study, CATGraSS is modified to account for heterogeneity in soil thickness and tested in the study catchment using the historical climate of the region. Predicted vegetation patterns are compared with those obtained from satellite images. Results of model under current climate underscore the importance of solar irradiance and soil thickness, especially in the uplands where soil is shallow, in determining vegetation composition over complex terrain. A stochastic weather generator is used to generate future climate change scenarios for the catchment by downscaling GCM realizations in space and time. Future increase in atmospheric CO2 concentration was considered through modifying the vegetation water use efficiency and stomatal resistance for our study site. Model results suggest that vegetation pattern is highly sensitive to temperature and rainfall variations provided by climate scenarios (30% reduction of the annual precipitation and a 2.8 °C increase of the mean annual temperature). Future climate change is predicted to bring a considerable reorganization of the plant composition following topographic patterns, leading to a decrease of trees cover at the expenses of a grass expansion, which will cause loss of landscape vegetation diversity.","lang":"eng"}],"extern":"1","type":"journal_article","oa_version":"None","article_type":"original","doi":"10.1016/j.advwatres.2014.08.001","volume":73,"day":"01","publisher":"Elsevier","month":"11","article_processing_charge":"No","keyword":["CA model","Climate change","Ecohydrology","Topography"],"date_published":"2014-11-01T00:00:00Z","das_tickbox":"1","fulldoi":"https://doi.org/10.1016/j.advwatres.2014.08.001","intvolume":"        73","publication_status":"published","quality_controlled":"1","year":"2014"},{"keyword":["Climate change","Hydrological modeling","Stochastic downscaling","Uncertainty","Water resources","Alps"],"article_processing_charge":"No","date_published":"2014-09-15T00:00:00Z","fulldoi":"https://doi.org/10.1016/j.scitotenv.2013.12.014","das_tickbox":"1","intvolume":"       493","pmid":1,"year":"2014","quality_controlled":"1","publication_status":"published","doi":"10.1016/j.scitotenv.2013.12.014","volume":493,"day":"15","month":"09","publisher":"Elsevier","external_id":{"pmid":["24418218"]},"citation":{"ista":"Fatichi S, Rimkus S, Burlando P, Bordoy R. 2014. Does internal climate variability overwhelm climate change signals in streamflow? The upper Po and Rhone basin case studies. Science of The Total Environment. 493, 1171–1182.","short":"S. Fatichi, S. Rimkus, P. Burlando, R. Bordoy, Science of The Total Environment 493 (2014) 1171–1182.","ieee":"S. Fatichi, S. Rimkus, P. Burlando, and R. Bordoy, “Does internal climate variability overwhelm climate change signals in streamflow? The upper Po and Rhone basin case studies,” <i>Science of The Total Environment</i>, vol. 493. Elsevier, pp. 1171–1182, 2014.","ama":"Fatichi S, Rimkus S, Burlando P, Bordoy R. Does internal climate variability overwhelm climate change signals in streamflow? The upper Po and Rhone basin case studies. <i>Science of The Total Environment</i>. 2014;493:1171-1182. doi:<a href=\"https://doi.org/10.1016/j.scitotenv.2013.12.014\">10.1016/j.scitotenv.2013.12.014</a>","mla":"Fatichi, Simone, et al. “Does Internal Climate Variability Overwhelm Climate Change Signals in Streamflow? The Upper Po and Rhone Basin Case Studies.” <i>Science of The Total Environment</i>, vol. 493, Elsevier, 2014, pp. 1171–82, doi:<a href=\"https://doi.org/10.1016/j.scitotenv.2013.12.014\">10.1016/j.scitotenv.2013.12.014</a>.","apa":"Fatichi, S., Rimkus, S., Burlando, P., &#38; Bordoy, R. (2014). Does internal climate variability overwhelm climate change signals in streamflow? The upper Po and Rhone basin case studies. <i>Science of The Total Environment</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.scitotenv.2013.12.014\">https://doi.org/10.1016/j.scitotenv.2013.12.014</a>","chicago":"Fatichi, Simone, S. Rimkus, P. Burlando, and R. Bordoy. “Does Internal Climate Variability Overwhelm Climate Change Signals in Streamflow? The Upper Po and Rhone Basin Case Studies.” <i>Science of The Total Environment</i>. Elsevier, 2014. <a href=\"https://doi.org/10.1016/j.scitotenv.2013.12.014\">https://doi.org/10.1016/j.scitotenv.2013.12.014</a>."},"page":"1171-1182","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_updated":"2026-08-12T14:17:26Z","author":[{"full_name":"Fatichi, Simone","first_name":"Simone","last_name":"Fatichi","id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6"},{"full_name":"Rimkus, S.","first_name":"S.","last_name":"Rimkus"},{"full_name":"Burlando, P.","first_name":"P.","last_name":"Burlando"},{"full_name":"Bordoy, R.","first_name":"R.","last_name":"Bordoy"}],"date_created":"2026-07-27T12:30:23Z","status":"public","_id":"22459","title":"Does internal climate variability overwhelm climate change signals in streamflow? The upper Po and Rhone basin case studies","abstract":[{"lang":"eng","text":"Projections of climate change effects in streamflow are increasingly required to plan water management strategies. These projections are however largely uncertain due to the spread among climate model realizations, internal climate variability, and difficulties in transferring climate model results at the spatial and temporal scales required by catchment hydrology. A combination of a stochastic downscaling methodology and distributed hydrological modeling was used in the ACQWA project to provide projections of future streamflow (up to year 2050) for the upper Po and Rhone basins, respectively located in northern Italy and south-western Switzerland. Results suggest that internal (stochastic) climate variability is a fundamental source of uncertainty, typically comparable or larger than the projected climate change signal. Therefore, climate change effects in streamflow mean, frequency, and seasonality can be masked by natural climatic fluctuations in large parts of the analyzed regions. An exception to the overwhelming role of stochastic variability is represented by high elevation catchments fed by glaciers where streamflow is expected to be considerably reduced due to glacier retreat, with consequences appreciable in the main downstream rivers in August and September. Simulations also identify regions (west upper Rhone and Toce, Ticino river basins) where a strong precipitation increase in the February to April period projects streamflow beyond the range of natural climate variability during the melting season. This study emphasizes the importance of including internal climate variability in climate change analyses, especially when compared to the limited uncertainty that would be accounted for by few deterministic projections. The presented results could be useful in guiding more specific impact studies, although design or management decisions should be better based on reliability and vulnerability criteria as suggested by recent literature."}],"extern":"1","article_type":"original","oa_version":"None","type":"journal_article","OA_type":"closed access","language":[{"iso":"eng"}],"scopus_import":"1","publication":"Science of The Total Environment","publication_identifier":{"eissn":["1879-1026"],"issn":["0048-9697"]}},{"day":"01","oa":1,"month":"09","publisher":"American Geophysical Union","volume":52,"doi":"10.1002/2014rg000458","quality_controlled":"1","year":"2014","publication_status":"published","intvolume":"        52","date_published":"2014-09-01T00:00:00Z","article_processing_charge":"No","fulldoi":"https://doi.org/10.1002/2014rg000458","das_tickbox":"1","main_file_link":[{"url":"https://doi.org/10.1002/2014RG000458","open_access":"1"}],"publication":"Reviews of Geophysics","issue":"3","scopus_import":"1","publication_identifier":{"issn":["8755-1209"],"eissn":["1944-9208"]},"OA_type":"free access","OA_place":"publisher","language":[{"iso":"eng"}],"_id":"22460","title":"Toward a better integration of biological data from precipitation manipulation experiments into Earth system models","date_created":"2026-07-27T12:30:23Z","author":[{"full_name":"Smith, Nicholas G.","first_name":"Nicholas G.","last_name":"Smith"},{"first_name":"Vikki L.","last_name":"Rodgers","full_name":"Rodgers, Vikki L."},{"full_name":"Brzostek, Edward R.","last_name":"Brzostek","first_name":"Edward R."},{"full_name":"Kulmatiski, Andrew","last_name":"Kulmatiski","first_name":"Andrew"},{"last_name":"Avolio","first_name":"Meghan L.","full_name":"Avolio, Meghan L."},{"full_name":"Hoover, David L.","last_name":"Hoover","first_name":"David L."},{"full_name":"Koerner, Sally E.","last_name":"Koerner","first_name":"Sally E."},{"full_name":"Grant, Kerstin","first_name":"Kerstin","last_name":"Grant"},{"full_name":"Jentsch, Anke","last_name":"Jentsch","first_name":"Anke"},{"first_name":"Simone","last_name":"Fatichi","id":"cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6","full_name":"Fatichi, Simone"},{"full_name":"Niyogi, Dev","first_name":"Dev","last_name":"Niyogi"}],"status":"public","article_type":"original","type":"journal_article","oa_version":"Published Version","abstract":[{"lang":"eng","text":"The biological responses to precipitation within the terrestrial components of Earth system models, or land surface models (LSMs), are mechanistically simple and poorly constrained, leaving projections of terrestrial ecosystem functioning and feedbacks to climate change uncertain. A number of field experiments have been conducted or are underway to test how changing precipitation will affect terrestrial ecosystems. Results from these experiments have the potential to vastly improve modeled processes. However, the transformation of experimental results into model improvements still represents a grand challenge. Here we review the current state of precipitation manipulation experiments and the precipitation responses of biological processes in LSMs to explore how these experiments can help improve model realism. First, we discuss contemporary precipitation projections and then review the structure and function of current-generation LSMs. We then examine different experimental designs and discuss basic variables that, if measured, would increase a field experiment's usefulness in a modeling context. Next, we compare biological processes commonly measured in the field with their model analogs and find that, in many cases, the way these processes are measured in the field is not compatible with the way they are represented in LSMs, an effect that hinders model development. We then discuss the challenge of scaling from the plot to the globe. Finally, we provide a series of recommendations aimed to improve the connectivity between experiments and LSMs and conclude that studies designed from the perspective of researchers in both communities will provide the greatest benefit to the broader global change community."}],"extern":"1","page":"412-434","citation":{"apa":"Smith, N. G., Rodgers, V. L., Brzostek, E. R., Kulmatiski, A., Avolio, M. L., Hoover, D. L., … Niyogi, D. (2014). Toward a better integration of biological data from precipitation manipulation experiments into Earth system models. <i>Reviews of Geophysics</i>. American Geophysical Union. <a href=\"https://doi.org/10.1002/2014rg000458\">https://doi.org/10.1002/2014rg000458</a>","chicago":"Smith, Nicholas G., Vikki L. Rodgers, Edward R. Brzostek, Andrew Kulmatiski, Meghan L. Avolio, David L. Hoover, Sally E. Koerner, et al. “Toward a Better Integration of Biological Data from Precipitation Manipulation Experiments into Earth System Models.” <i>Reviews of Geophysics</i>. American Geophysical Union, 2014. <a href=\"https://doi.org/10.1002/2014rg000458\">https://doi.org/10.1002/2014rg000458</a>.","ista":"Smith NG, Rodgers VL, Brzostek ER, Kulmatiski A, Avolio ML, Hoover DL, Koerner SE, Grant K, Jentsch A, Fatichi S, Niyogi D. 2014. Toward a better integration of biological data from precipitation manipulation experiments into Earth system models. Reviews of Geophysics. 52(3), 412–434.","ieee":"N. G. Smith <i>et al.</i>, “Toward a better integration of biological data from precipitation manipulation experiments into Earth system models,” <i>Reviews of Geophysics</i>, vol. 52, no. 3. American Geophysical Union, pp. 412–434, 2014.","short":"N.G. Smith, V.L. Rodgers, E.R. Brzostek, A. Kulmatiski, M.L. Avolio, D.L. Hoover, S.E. Koerner, K. Grant, A. Jentsch, S. Fatichi, D. Niyogi, Reviews of Geophysics 52 (2014) 412–434.","ama":"Smith NG, Rodgers VL, Brzostek ER, et al. Toward a better integration of biological data from precipitation manipulation experiments into Earth system models. <i>Reviews of Geophysics</i>. 2014;52(3):412-434. doi:<a href=\"https://doi.org/10.1002/2014rg000458\">10.1002/2014rg000458</a>","mla":"Smith, Nicholas G., et al. “Toward a Better Integration of Biological Data from Precipitation Manipulation Experiments into Earth System Models.” <i>Reviews of Geophysics</i>, vol. 52, no. 3, American Geophysical Union, 2014, pp. 412–34, doi:<a href=\"https://doi.org/10.1002/2014rg000458\">10.1002/2014rg000458</a>."},"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","date_updated":"2026-08-12T14:21:11Z"},{"year":"2014","publication_status":"published","intvolume":"        89","date_published":"2014-03-04T00:00:00Z","article_processing_charge":"No","fulldoi":"https://doi.org/10.1103/PhysRevE.89.032701","arxiv":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1402.0430"}],"day":"04","oa":1,"external_id":{"arxiv":["1402.0430"],"isi":["000332274100002"]},"department":[{"_id":"NiBa"},{"_id":"GaTk"}],"month":"03","publisher":"American Physical Society","article_number":"032701","isi":1,"volume":89,"doi":"10.1103/PhysRevE.89.032701","_id":"1896","title":"Mathematical model of alternative mechanism of telomere length maintenance","status":"public","date_created":"2018-12-11T11:54:35Z","author":[{"last_name":"Kollár","first_name":"Richard","full_name":"Kollár, Richard"},{"first_name":"Katarína","last_name":"Bod'ová","id":"2BA24EA0-F248-11E8-B48F-1D18A9856A87","full_name":"Bod'ová, Katarína","orcid":"0000-0002-7214-0171"},{"full_name":"Nosek, Jozef","last_name":"Nosek","first_name":"Jozef"},{"last_name":"Tomáška","first_name":"Ľubomír","full_name":"Tomáška, Ľubomír"}],"type":"journal_article","oa_version":"Submitted Version","abstract":[{"text":"Biopolymer length regulation is a complex process that involves a large number of biological, chemical, and physical subprocesses acting simultaneously across multiple spatial and temporal scales. An illustrative example important for genomic stability is the length regulation of telomeres - nucleoprotein structures at the ends of linear chromosomes consisting of tandemly repeated DNA sequences and a specialized set of proteins. Maintenance of telomeres is often facilitated by the enzyme telomerase but, particularly in telomerase-free systems, the maintenance of chromosomal termini depends on alternative lengthening of telomeres (ALT) mechanisms mediated by recombination. Various linear and circular DNA structures were identified to participate in ALT, however, dynamics of the whole process is still poorly understood. We propose a chemical kinetics model of ALT with kinetic rates systematically derived from the biophysics of DNA diffusion and looping. The reaction system is reduced to a coagulation-fragmentation system by quasi-steady-state approximation. The detailed treatment of kinetic rates yields explicit formulas for expected size distributions of telomeres that demonstrate the key role played by the J factor, a quantitative measure of bending of polymers. The results are in agreement with experimental data and point out interesting phenomena: an appearance of very long telomeric circles if the total telomere density exceeds a critical value (excess mass) and a nonlinear response of the telomere size distributions to the amount of telomeric DNA in the system. The results can be of general importance for understanding dynamics of telomeres in telomerase-independent systems as this mode of telomere maintenance is similar to the situation in tumor cells lacking telomerase activity. Furthermore, due to its universality, the model may also serve as a prototype of an interaction between linear and circular DNA structures in various settings.","lang":"eng"}],"citation":{"short":"R. Kollár, K. Bodova, J. Nosek, Ľ. Tomáška, Physical Review E 89 (2014).","ieee":"R. Kollár, K. Bodova, J. Nosek, and Ľ. Tomáška, “Mathematical model of alternative mechanism of telomere length maintenance,” <i>Physical Review E</i>, vol. 89, no. 3. American Physical Society, 2014.","ista":"Kollár R, Bodova K, Nosek J, Tomáška Ľ. 2014. Mathematical model of alternative mechanism of telomere length maintenance. Physical Review E. 89(3), 032701.","ama":"Kollár R, Bodova K, Nosek J, Tomáška Ľ. Mathematical model of alternative mechanism of telomere length maintenance. <i>Physical Review E</i>. 2014;89(3). doi:<a href=\"https://doi.org/10.1103/PhysRevE.89.032701\">10.1103/PhysRevE.89.032701</a>","mla":"Kollár, Richard, et al. “Mathematical Model of Alternative Mechanism of Telomere Length Maintenance.” <i>Physical Review E</i>, vol. 89, no. 3, 032701, American Physical Society, 2014, doi:<a href=\"https://doi.org/10.1103/PhysRevE.89.032701\">10.1103/PhysRevE.89.032701</a>.","apa":"Kollár, R., Bodova, K., Nosek, J., &#38; Tomáška, Ľ. (2014). Mathematical model of alternative mechanism of telomere length maintenance. <i>Physical Review E</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevE.89.032701\">https://doi.org/10.1103/PhysRevE.89.032701</a>","chicago":"Kollár, Richard, Katarina Bodova, Jozef Nosek, and Ľubomír Tomáška. “Mathematical Model of Alternative Mechanism of Telomere Length Maintenance.” <i>Physical Review E</i>. American Physical Society, 2014. <a href=\"https://doi.org/10.1103/PhysRevE.89.032701\">https://doi.org/10.1103/PhysRevE.89.032701</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-08-12T14:27:46Z","publication":"Physical Review E","issue":"3","scopus_import":"1","acknowledgement":"The work was supported by the VEGA Grant No. 1/0459/13 (R.K. and K.B.).","language":[{"iso":"eng"}],"publist_id":"5198"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-08-12T14:26:10Z","project":[{"grant_number":"SFB-TR3-TP10B","_id":"25BDE9A4-B435-11E9-9278-68D0E5697425","name":"Glutamaterge synaptische Übertragung und Plastizität in hippocampalen Mikroschaltkreisen"}],"citation":{"chicago":"Shi, Liang, Björn Hof, and Andreas Tilgner. “Transient Growth of Ekman-Couette Flow.” <i>Physical Review E</i>. American Physical Society, 2014. <a href=\"https://doi.org/10.1103/PhysRevE.89.013001\">https://doi.org/10.1103/PhysRevE.89.013001</a>.","apa":"Shi, L., Hof, B., &#38; Tilgner, A. (2014). Transient growth of Ekman-Couette flow. <i>Physical Review E</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevE.89.013001\">https://doi.org/10.1103/PhysRevE.89.013001</a>","ama":"Shi L, Hof B, Tilgner A. Transient growth of Ekman-Couette flow. <i>Physical Review E</i>. 2014;89(1). doi:<a href=\"https://doi.org/10.1103/PhysRevE.89.013001\">10.1103/PhysRevE.89.013001</a>","mla":"Shi, Liang, et al. “Transient Growth of Ekman-Couette Flow.” <i>Physical Review E</i>, vol. 89, no. 1, 013001, American Physical Society, 2014, doi:<a href=\"https://doi.org/10.1103/PhysRevE.89.013001\">10.1103/PhysRevE.89.013001</a>.","short":"L. Shi, B. Hof, A. Tilgner, Physical Review E 89 (2014).","ista":"Shi L, Hof B, Tilgner A. 2014. Transient growth of Ekman-Couette flow. Physical Review E. 89(1), 013001.","ieee":"L. Shi, B. Hof, and A. Tilgner, “Transient growth of Ekman-Couette flow,” <i>Physical Review E</i>, vol. 89, no. 1. American Physical Society, 2014."},"oa_version":"Submitted Version","type":"journal_article","abstract":[{"lang":"eng","text":"Coriolis force effects on shear flows are important in geophysical and astrophysical contexts. We report a study on the linear stability and the transient energy growth of the plane Couette flow with system rotation perpendicular to the shear direction. External rotation causes linear instability. At small rotation rates, the onset of linear instability scales inversely with the rotation rate and the optimal transient growth in the linearly stable region is slightly enhanced ∼Re2. The corresponding optimal initial perturbations are characterized by roll structures inclined in the streamwise direction and are twisted under external rotation. At large rotation rates, the transient growth is significantly inhibited and hence linear stability analysis is a reliable indicator for instability."}],"_id":"2226","title":"Transient growth of Ekman-Couette flow","date_created":"2018-12-11T11:56:26Z","status":"public","author":[{"last_name":"Shi","first_name":"Liang","full_name":"Shi, Liang"},{"orcid":"0000-0003-2057-2754","full_name":"Hof, Björn","id":"3A374330-F248-11E8-B48F-1D18A9856A87","first_name":"Björn","last_name":"Hof"},{"first_name":"Andreas","last_name":"Tilgner","full_name":"Tilgner, Andreas"}],"publist_id":"4737","language":[{"iso":"eng"}],"publication_identifier":{"issn":["1539-3755"]},"publication":"Physical Review E","issue":"1","scopus_import":"1","fulldoi":"https://doi.org/10.1103/PhysRevE.89.013001","arxiv":1,"main_file_link":[{"url":"http://arxiv.org/abs/1312.5095","open_access":"1"}],"date_published":"2014-01-06T00:00:00Z","article_processing_charge":"No","year":"2014","quality_controlled":"1","publication_status":"published","intvolume":"        89","volume":89,"doi":"10.1103/PhysRevE.89.013001","article_number":"013001","isi":1,"external_id":{"isi":["000332155800013"],"arxiv":["1312.5095"]},"month":"01","department":[{"_id":"BjHo"}],"publisher":"American Physical Society","day":"06","oa":1,"corr_author":"1"},{"month":"06","department":[{"_id":"GaTk"}],"publisher":"American Physical Society","external_id":{"arxiv":["1403.3209"],"isi":["000337733900007"]},"oa":1,"corr_author":"1","day":"16","doi":"10.1103/PhysRevE.89.062809","volume":89,"article_number":"062809","isi":1,"intvolume":"        89","year":"2014","quality_controlled":"1","publication_status":"published","arxiv":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1403.3209"}],"fulldoi":"https://doi.org/10.1103/PhysRevE.89.062809","article_processing_charge":"No","date_published":"2014-06-16T00:00:00Z","ec_funded":1,"acknowledgement":"V.B.S. is partially supported by contract MEC (Grant No. AYA2010-22111-C03-02).\r\n","issue":"6","scopus_import":"1","publication":"Physical Review E","language":[{"iso":"eng"}],"publist_id":"4798","abstract":[{"lang":"eng","text":"We describe a simple adaptive network of coupled chaotic maps. The network reaches a stationary state (frozen topology) for all values of the coupling parameter, although the dynamics of the maps at the nodes of the network can be nontrivial. The structure of the network shows interesting hierarchical properties and in certain parameter regions the dynamics is polysynchronous: Nodes can be divided in differently synchronized classes but, contrary to cluster synchronization, nodes in the same class need not be connected to each other. These complicated synchrony patterns have been conjectured to play roles in systems biology and circuits. The adaptive system we study describes ways whereby this behavior can evolve from undifferentiated nodes."}],"oa_version":"Preprint","type":"journal_article","author":[{"full_name":"Botella Soler, Vicente","orcid":"0000-0002-8790-1914","last_name":"Botella Soler","first_name":"Vicente","id":"421234E8-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Paul","last_name":"Glendinning","full_name":"Glendinning, Paul"}],"date_created":"2018-12-11T11:56:11Z","status":"public","_id":"2183","title":"Hierarchy and polysynchrony in an adaptive network ","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2026-08-12T14:27:10Z","project":[{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"}],"citation":{"ama":"Botella Soler V, Glendinning P. Hierarchy and polysynchrony in an adaptive network . <i>Physical Review E</i>. 2014;89(6). doi:<a href=\"https://doi.org/10.1103/PhysRevE.89.062809\">10.1103/PhysRevE.89.062809</a>","mla":"Botella Soler, Vicente, and Paul Glendinning. “Hierarchy and Polysynchrony in an Adaptive Network .” <i>Physical Review E</i>, vol. 89, no. 6, 062809, American Physical Society, 2014, doi:<a href=\"https://doi.org/10.1103/PhysRevE.89.062809\">10.1103/PhysRevE.89.062809</a>.","ista":"Botella Soler V, Glendinning P. 2014. Hierarchy and polysynchrony in an adaptive network . Physical Review E. 89(6), 062809.","short":"V. Botella Soler, P. Glendinning, Physical Review E 89 (2014).","ieee":"V. Botella Soler and P. Glendinning, “Hierarchy and polysynchrony in an adaptive network ,” <i>Physical Review E</i>, vol. 89, no. 6. American Physical Society, 2014.","chicago":"Botella Soler, Vicente, and Paul Glendinning. “Hierarchy and Polysynchrony in an Adaptive Network .” <i>Physical Review E</i>. American Physical Society, 2014. <a href=\"https://doi.org/10.1103/PhysRevE.89.062809\">https://doi.org/10.1103/PhysRevE.89.062809</a>.","apa":"Botella Soler, V., &#38; Glendinning, P. (2014). Hierarchy and polysynchrony in an adaptive network . <i>Physical Review E</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevE.89.062809\">https://doi.org/10.1103/PhysRevE.89.062809</a>"}},{"day":"01","external_id":{"pmid":["24444429"]},"month":"03","publisher":"Wiley-Blackwell","volume":91,"doi":"10.1111/mmi.12507","year":"2014","pmid":1,"publication_status":"published","intvolume":"        91","date_published":"2014-03-01T00:00:00Z","article_processing_charge":"No","fulldoi":"https://doi.org/10.1111/mmi.12507","publication":"Molecular Microbiology","issue":"5","acknowledgement":"Funded by      Health Research Council of New Zealand     Royal Society of New Zealand     University of Otago     New Zealand Synchrotron Group","publication_identifier":{"eissn":["1365-2958"],"issn":["0950-382X"]},"OA_type":"free access","publist_id":"5103","language":[{"iso":"eng"}],"_id":"1980","title":"Structure of the bacterial type II NADH dehydrogenase: a monotopic membrane protein with an essential role in energy generation","status":"public","author":[{"first_name":"Adam","last_name":"Heikal","full_name":"Heikal, Adam"},{"last_name":"Nakatani","first_name":"Yoshio","full_name":"Nakatani, Yoshio"},{"full_name":"Dunn, Elyse","first_name":"Elyse","last_name":"Dunn"},{"first_name":"Marion","last_name":"Weimar","full_name":"Weimar, Marion"},{"first_name":"Catherine","last_name":"Day","full_name":"Day, Catherine"},{"full_name":"Baker, Edward","last_name":"Baker","first_name":"Edward"},{"last_name":"Lott","first_name":"Shaun","full_name":"Lott, Shaun"},{"id":"338D39FE-F248-11E8-B48F-1D18A9856A87","last_name":"Sazanov","first_name":"Leonid A","full_name":"Sazanov, Leonid A","orcid":"0000-0002-0977-7989"},{"full_name":"Cook, Gregory","first_name":"Gregory","last_name":"Cook"}],"date_created":"2018-12-11T11:55:01Z","article_type":"original","oa_version":"None","type":"journal_article","abstract":[{"text":"Non-proton pumping type II NADH dehydrogenase (NDH-2) plays a central role in the respiratory metabolism of bacteria, and in the mitochondria of fungi, plants and protists. The lack of NDH-2 in mammalian mitochondria and its essentiality in important bacterial pathogens suggests these enzymes may represent a potential new drug target to combat microbial pathogens. Here, we report the first crystal structure of a bacterial NDH-2 enzyme at 2.5Å resolution from Caldalkalibacillus thermarum. The NDH-2 structure reveals a homodimeric organization that has a unique dimer interface. NDH-2 is localized to the cytoplasmic membrane by two separated C-terminal membrane-anchoring regions that are essential for membrane localization and FAD binding, but not NDH-2 dimerization. Comparison of bacterial NDH-2 with the yeast NADH dehydrogenase (Ndi1) structure revealed non-overlapping binding sites for quinone and NADH in the bacterial enzyme. The bacterial NDH-2 structure establishes a framework for the structure-based design of small-molecule inhibitors.","lang":"eng"}],"extern":"1","citation":{"ista":"Heikal A, Nakatani Y, Dunn E, Weimar M, Day C, Baker E, Lott S, Sazanov LA, Cook G. 2014. Structure of the bacterial type II NADH dehydrogenase: a monotopic membrane protein with an essential role in energy generation. Molecular Microbiology. 91(5), 950–964.","short":"A. Heikal, Y. Nakatani, E. Dunn, M. Weimar, C. Day, E. Baker, S. Lott, L.A. Sazanov, G. Cook, Molecular Microbiology 91 (2014) 950–964.","ieee":"A. Heikal <i>et al.</i>, “Structure of the bacterial type II NADH dehydrogenase: a monotopic membrane protein with an essential role in energy generation,” <i>Molecular Microbiology</i>, vol. 91, no. 5. Wiley-Blackwell, pp. 950–964, 2014.","ama":"Heikal A, Nakatani Y, Dunn E, et al. Structure of the bacterial type II NADH dehydrogenase: a monotopic membrane protein with an essential role in energy generation. <i>Molecular Microbiology</i>. 2014;91(5):950-964. doi:<a href=\"https://doi.org/10.1111/mmi.12507\">10.1111/mmi.12507</a>","mla":"Heikal, Adam, et al. “Structure of the Bacterial Type II NADH Dehydrogenase: A Monotopic Membrane Protein with an Essential Role in Energy Generation.” <i>Molecular Microbiology</i>, vol. 91, no. 5, Wiley-Blackwell, 2014, pp. 950–64, doi:<a href=\"https://doi.org/10.1111/mmi.12507\">10.1111/mmi.12507</a>.","apa":"Heikal, A., Nakatani, Y., Dunn, E., Weimar, M., Day, C., Baker, E., … Cook, G. (2014). Structure of the bacterial type II NADH dehydrogenase: a monotopic membrane protein with an essential role in energy generation. <i>Molecular Microbiology</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/mmi.12507\">https://doi.org/10.1111/mmi.12507</a>","chicago":"Heikal, Adam, Yoshio Nakatani, Elyse Dunn, Marion Weimar, Catherine Day, Edward Baker, Shaun Lott, Leonid A Sazanov, and Gregory Cook. “Structure of the Bacterial Type II NADH Dehydrogenase: A Monotopic Membrane Protein with an Essential Role in Energy Generation.” <i>Molecular Microbiology</i>. Wiley-Blackwell, 2014. <a href=\"https://doi.org/10.1111/mmi.12507\">https://doi.org/10.1111/mmi.12507</a>."},"page":"950 - 964","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","date_updated":"2026-09-04T11:27:46Z"},{"publist_id":"5322","language":[{"iso":"eng"}],"OA_type":"closed access","publication_identifier":{"issn":["0896-6273"],"eissn":["1097-4199"]},"acknowledgement":"This work was supported by the National Institutes of Health R01NS41537. G.K. was supported by an EMBO Long Term Fellowship, S.L.B. by the A.P. Giannini Fellowship, and A.G.F. by the Brain Behavior Research Foundation","issue":"6","publication":"Neuron","date_updated":"2026-09-04T11:50:27Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","citation":{"ieee":"S. Baek <i>et al.</i>, “Off-target effect of doublecortin family shRNA on neuronal migration associated with endogenous MicroRNA dysregulation,” <i>Neuron</i>, vol. 82, no. 6. Elsevier, pp. 1255–1262, 2014.","short":"S. Baek, G. Kerjan, S. Bielas, J. Lee, A. Fenstermaker, G. Novarino, J. Gleeson, Neuron 82 (2014) 1255–1262.","ista":"Baek S, Kerjan G, Bielas S, Lee J, Fenstermaker A, Novarino G, Gleeson J. 2014. Off-target effect of doublecortin family shRNA on neuronal migration associated with endogenous MicroRNA dysregulation. Neuron. 82(6), 1255–1262.","mla":"Baek, Seungtae, et al. “Off-Target Effect of Doublecortin Family ShRNA on Neuronal Migration Associated with Endogenous MicroRNA Dysregulation.” <i>Neuron</i>, vol. 82, no. 6, Elsevier, 2014, pp. 1255–62, doi:<a href=\"https://doi.org/10.1016/j.neuron.2014.04.036\">10.1016/j.neuron.2014.04.036</a>.","ama":"Baek S, Kerjan G, Bielas S, et al. Off-target effect of doublecortin family shRNA on neuronal migration associated with endogenous MicroRNA dysregulation. <i>Neuron</i>. 2014;82(6):1255-1262. doi:<a href=\"https://doi.org/10.1016/j.neuron.2014.04.036\">10.1016/j.neuron.2014.04.036</a>","apa":"Baek, S., Kerjan, G., Bielas, S., Lee, J., Fenstermaker, A., Novarino, G., &#38; Gleeson, J. (2014). Off-target effect of doublecortin family shRNA on neuronal migration associated with endogenous MicroRNA dysregulation. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2014.04.036\">https://doi.org/10.1016/j.neuron.2014.04.036</a>","chicago":"Baek, Seungtae, Géraldine Kerjan, Stephanie Bielas, Jieun Lee, Ali Fenstermaker, Gaia Novarino, and Joseph Gleeson. “Off-Target Effect of Doublecortin Family ShRNA on Neuronal Migration Associated with Endogenous MicroRNA Dysregulation.” <i>Neuron</i>. Elsevier, 2014. <a href=\"https://doi.org/10.1016/j.neuron.2014.04.036\">https://doi.org/10.1016/j.neuron.2014.04.036</a>."},"page":"1255 - 1262","extern":"1","abstract":[{"lang":"eng","text":"Acute gene inactivation using short hairpin RNA (shRNA, knockdown) in developing brain is a powerful technique to study genetic function; however, discrepancies between knockdown and knockout murine phenotypes have left unanswered questions. For example, doublecortin (Dcx) knockdown but not knockout shows a neocortical neuronal migration phenotype. Here we report that in utero electroporation of shRNA, but not siRNA or miRNA, to Dcx demonstrates a migration phenotype in Dcx knockouts akin to the effect in wild-type mice, suggestingshRNA-mediated off-target toxicity. This effect wasnot limited to Dcx, as it was observed in Dclk1 knockouts, as well as with a fraction of scrambled shRNAs, suggesting a sequence-dependent but not sequence-specific effect. Profiling RNAs from electroporated cells showed a defect in endogenous let7 miRNA levels, and disruption of let7 or Dicer recapitulated the migration defect. The results suggest that shRNA-mediated knockdown can produce untoward migration effects by altering endogenous miRNA pathways."}],"type":"journal_article","oa_version":"None","article_type":"original","date_created":"2018-12-11T11:54:01Z","author":[{"full_name":"Baek, Seungtae","last_name":"Baek","first_name":"Seungtae"},{"full_name":"Kerjan, Géraldine","last_name":"Kerjan","first_name":"Géraldine"},{"full_name":"Bielas, Stephanie","first_name":"Stephanie","last_name":"Bielas"},{"last_name":"Lee","first_name":"Jieun","full_name":"Lee, Jieun"},{"last_name":"Fenstermaker","first_name":"Ali","full_name":"Fenstermaker, Ali"},{"first_name":"Gaia","last_name":"Novarino","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","full_name":"Novarino, Gaia","orcid":"0000-0002-7673-7178"},{"first_name":"Joseph","last_name":"Gleeson","full_name":"Gleeson, Joseph"}],"status":"public","title":"Off-target effect of doublecortin family shRNA on neuronal migration associated with endogenous MicroRNA dysregulation","_id":"1791","doi":"10.1016/j.neuron.2014.04.036","volume":82,"publisher":"Elsevier","month":"06","external_id":{"pmid":["24945770"]},"day":"18","fulldoi":"https://doi.org/10.1016/j.neuron.2014.04.036","article_processing_charge":"No","date_published":"2014-06-18T00:00:00Z","intvolume":"        82","publication_status":"published","pmid":1,"year":"2014"}]