[{"author":[{"last_name":"Dirksen","full_name":"Dirksen, Sjoerd","first_name":"Sjoerd"},{"last_name":"Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","first_name":"Jan","orcid":"0000-0002-0845-1338","full_name":"Jan Maas"},{"first_name":"Jan","full_name":"van Neerven, Jan M","last_name":"Van Neerven"}],"_id":"2117","date_published":"2013-11-18T00:00:00Z","extern":1,"doi":"10.1214/EJP.v18-2945 ","quality_controlled":0,"publication_status":"published","acknowledgement":"The first and third named authors were supported by VICI subsidy 639.033.604 of the Netherlands Organisation for Scientific Research (NWO). The first and second named authors were supported by the German Research Foundation in the Collaborative Research C","date_created":"2018-12-11T11:55:49Z","abstract":[{"text":"We prove new upper and lower bounds for Banach space-valued stochastic integrals with respect to a compensated Poisson random measure. Our estimates apply to Banach spaces with non-trivial martingale (co)type and extend various results in the literature. We also develop a Malliavin framework to interpret Poisson stochastic integrals as vector-valued Skorohod integrals, and prove a Clark-Ocone representation formula.","lang":"eng"}],"volume":18,"date_updated":"2021-01-12T06:55:24Z","intvolume":"        18","publisher":"Institute of Mathematical Statistics","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1307.7901 "}],"year":"2013","citation":{"short":"S. Dirksen, J. Maas, J. Van Neerven, Electronic Journal of Probability 18 (2013).","ieee":"S. Dirksen, J. Maas, and J. Van Neerven, “Poisson stochastic integration in Banach spaces,” <i>Electronic Journal of Probability</i>, vol. 18. Institute of Mathematical Statistics, 2013.","ista":"Dirksen S, Maas J, Van Neerven J. 2013. Poisson stochastic integration in Banach spaces. Electronic Journal of Probability. 18.","ama":"Dirksen S, Maas J, Van Neerven J. Poisson stochastic integration in Banach spaces. <i>Electronic Journal of Probability</i>. 2013;18. doi:<a href=\"https://doi.org/10.1214/EJP.v18-2945 \">10.1214/EJP.v18-2945 </a>","chicago":"Dirksen, Sjoerd, Jan Maas, and Jan Van Neerven. “Poisson Stochastic Integration in Banach Spaces.” <i>Electronic Journal of Probability</i>. Institute of Mathematical Statistics, 2013. <a href=\"https://doi.org/10.1214/EJP.v18-2945 \">https://doi.org/10.1214/EJP.v18-2945 </a>.","apa":"Dirksen, S., Maas, J., &#38; Van Neerven, J. (2013). Poisson stochastic integration in Banach spaces. <i>Electronic Journal of Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/EJP.v18-2945 \">https://doi.org/10.1214/EJP.v18-2945 </a>","mla":"Dirksen, Sjoerd, et al. “Poisson Stochastic Integration in Banach Spaces.” <i>Electronic Journal of Probability</i>, vol. 18, Institute of Mathematical Statistics, 2013, doi:<a href=\"https://doi.org/10.1214/EJP.v18-2945 \">10.1214/EJP.v18-2945 </a>."},"oa":1,"type":"journal_article","day":"18","month":"11","status":"public","publication":"Electronic Journal of Probability","title":"Poisson stochastic integration in Banach spaces","publist_id":"4917"},{"acknowledgement":"JM acknowledges support by Rubicon subsidy 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO).","publication_status":"published","abstract":[{"text":"This paper continues the investigation of `Wasserstein-like' transportation distances for probability measures on discrete sets. We prove that the discrete transportation metrics on the d-dimensional discrete torus with mesh size 1/N converge, when N→∞, to the standard 2-Wasserstein distance W_2 on the continuous torus in the sense of Gromov-Hausdorff. This is the first convergence result for the recently developed discrete transportation metrics. The result shows the compatibility between these metrics and the well-established 2-Wasserstein metric. \n\n\n","lang":"eng"}],"date_created":"2018-12-11T11:55:53Z","date_published":"2013-01-01T00:00:00Z","_id":"2129","author":[{"first_name":"Nicola","full_name":"Gigli, Nicola","last_name":"Gigli"},{"last_name":"Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","first_name":"Jan","orcid":"0000-0002-0845-1338","full_name":"Jan Maas"}],"page":"879 - 899","quality_controlled":0,"doi":"10.1137/120886315 ","extern":1,"month":"01","day":"01","publist_id":"4904","publication":"SIAM Journal on Mathematical Analysis","title":"Gromov-Hausdorff convergence of discrete transportation metrics","status":"public","main_file_link":[{"url":"http://arxiv.org/abs/1207.6501","open_access":"1"}],"publisher":"Society for Industrial and Applied Mathematics ","intvolume":"        45","volume":45,"date_updated":"2021-01-12T06:55:29Z","type":"journal_article","citation":{"ieee":"N. Gigli and J. Maas, “Gromov-Hausdorff convergence of discrete transportation metrics,” <i>SIAM Journal on Mathematical Analysis</i>, vol. 45, no. 2. Society for Industrial and Applied Mathematics , pp. 879–899, 2013.","short":"N. Gigli, J. Maas, SIAM Journal on Mathematical Analysis 45 (2013) 879–899.","apa":"Gigli, N., &#38; Maas, J. (2013). Gromov-Hausdorff convergence of discrete transportation metrics. <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial and Applied Mathematics . <a href=\"https://doi.org/10.1137/120886315 \">https://doi.org/10.1137/120886315 </a>","mla":"Gigli, Nicola, and Jan Maas. “Gromov-Hausdorff Convergence of Discrete Transportation Metrics.” <i>SIAM Journal on Mathematical Analysis</i>, vol. 45, no. 2, Society for Industrial and Applied Mathematics , 2013, pp. 879–99, doi:<a href=\"https://doi.org/10.1137/120886315 \">10.1137/120886315 </a>.","ama":"Gigli N, Maas J. Gromov-Hausdorff convergence of discrete transportation metrics. <i>SIAM Journal on Mathematical Analysis</i>. 2013;45(2):879-899. doi:<a href=\"https://doi.org/10.1137/120886315 \">10.1137/120886315 </a>","ista":"Gigli N, Maas J. 2013. Gromov-Hausdorff convergence of discrete transportation metrics. SIAM Journal on Mathematical Analysis. 45(2), 879–899.","chicago":"Gigli, Nicola, and Jan Maas. “Gromov-Hausdorff Convergence of Discrete Transportation Metrics.” <i>SIAM Journal on Mathematical Analysis</i>. Society for Industrial and Applied Mathematics , 2013. <a href=\"https://doi.org/10.1137/120886315 \">https://doi.org/10.1137/120886315 </a>."},"oa":1,"issue":"2","year":"2013"},{"extern":1,"doi":"10.3389/fphy.2013.00017","quality_controlled":0,"author":[{"full_name":"Mikhail Lemeshko","orcid":"0000-0002-6990-7802","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko"}],"_id":"2139","date_published":"2013-10-07T00:00:00Z","date_created":"2018-12-11T11:55:56Z","abstract":[{"text":"Recently it has been shown that pairs of atoms can form metastable bonds due to non-conservative forces induced by dissipation [Lemeshko&amp;Weimer, Nature Comm. 4, 2230 (2013)]. Here we study the dynamics of interaction-induced coherent population trapping - the process responsible for the formation of dissipatively bound molecules. We derive the effective dissipative potentials induced between ultracold atoms by laser light, and study the time evolution of the scattering states. We demonstrate that binding occurs on short timescales of ~10 microseconds, even if the initial kinetic energy of the atoms significantly exceeds the depth of the dissipative potential. Dissipatively-bound molecules with preordained bond lengths and vibrational wavefunctions can be created and detected in current experiments with ultracold atoms.","lang":"eng"}],"acknowledgement":"The work was supported by the NSF through a grant for the Institute for Theoretical Atomic, Molecular, and Optical Physics at Harvard University and Smithsonian Astrophysical Observatory","publication_status":"published","year":"2013","issue":"17","oa":1,"citation":{"short":"M. Lemeshko, Frontiers Physics 1 (2013).","ieee":"M. Lemeshko, “Manipulating scattering of ultracold atoms with light-induced dissipation,” <i>Frontiers Physics</i>, vol. 1, no. 17. Frontiers Media, 2013.","ama":"Lemeshko M. Manipulating scattering of ultracold atoms with light-induced dissipation. <i>Frontiers Physics</i>. 2013;1(17). doi:<a href=\"https://doi.org/10.3389/fphy.2013.00017\">10.3389/fphy.2013.00017</a>","ista":"Lemeshko M. 2013. Manipulating scattering of ultracold atoms with light-induced dissipation. Frontiers Physics. 1(17).","chicago":"Lemeshko, Mikhail. “Manipulating Scattering of Ultracold Atoms with Light-Induced Dissipation.” <i>Frontiers Physics</i>. Frontiers Media, 2013. <a href=\"https://doi.org/10.3389/fphy.2013.00017\">https://doi.org/10.3389/fphy.2013.00017</a>.","apa":"Lemeshko, M. (2013). Manipulating scattering of ultracold atoms with light-induced dissipation. <i>Frontiers Physics</i>. Frontiers Media. <a href=\"https://doi.org/10.3389/fphy.2013.00017\">https://doi.org/10.3389/fphy.2013.00017</a>","mla":"Lemeshko, Mikhail. “Manipulating Scattering of Ultracold Atoms with Light-Induced Dissipation.” <i>Frontiers Physics</i>, vol. 1, no. 17, Frontiers Media, 2013, doi:<a href=\"https://doi.org/10.3389/fphy.2013.00017\">10.3389/fphy.2013.00017</a>."},"type":"journal_article","date_updated":"2021-01-12T06:55:32Z","volume":1,"intvolume":"         1","publisher":"Frontiers Media","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1307.8129"}],"status":"public","publication":"Frontiers Physics","title":"Manipulating scattering of ultracold atoms with light-induced dissipation","publist_id":"4885","day":"07","month":"10"},{"day":"01","month":"01","oa_version":"None","status":"public","publication":"Proceedings of the 40th annual ACM SIGPLAN-SIGACT symposium on Principles of programming language","title":"Quantitative abstraction refinement","publist_id":"4800","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2024-10-09T20:55:21Z","project":[{"_id":"25EE3708-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"267989","name":"Quantitative Reactive Modeling"},{"grant_number":"S11402-N23","name":"Moderne Concurrency Paradigms","call_identifier":"FWF","_id":"25F5A88A-B435-11E9-9278-68D0E5697425"}],"publisher":"ACM","year":"2013","citation":{"short":"P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 115–128.","ieee":"P. Cerny, T. A. Henzinger, and A. Radhakrishna, “Quantitative abstraction refinement,” in <i>Proceedings of the 40th annual ACM SIGPLAN-SIGACT symposium on Principles of programming language</i>, Rome, Italy, 2013, pp. 115–128.","chicago":"Cerny, Pavol, Thomas A Henzinger, and Arjun Radhakrishna. “Quantitative Abstraction Refinement.” In <i>Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language</i>, 115–28. ACM, 2013. <a href=\"https://doi.org/10.1145/2429069.2429085\">https://doi.org/10.1145/2429069.2429085</a>.","ista":"Cerny P, Henzinger TA, Radhakrishna A. 2013. Quantitative abstraction refinement. Proceedings of the 40th annual ACM SIGPLAN-SIGACT symposium on Principles of programming language. POPL: Principles of Programming Languages, 115–128.","ama":"Cerny P, Henzinger TA, Radhakrishna A. Quantitative abstraction refinement. In: <i>Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language</i>. ACM; 2013:115-128. doi:<a href=\"https://doi.org/10.1145/2429069.2429085\">10.1145/2429069.2429085</a>","mla":"Cerny, Pavol, et al. “Quantitative Abstraction Refinement.” <i>Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language</i>, ACM, 2013, pp. 115–28, doi:<a href=\"https://doi.org/10.1145/2429069.2429085\">10.1145/2429069.2429085</a>.","apa":"Cerny, P., Henzinger, T. A., &#38; Radhakrishna, A. (2013). Quantitative abstraction refinement. In <i>Proceedings of the 40th annual ACM SIGPLAN-SIGACT symposium on Principles of programming language</i> (pp. 115–128). Rome, Italy: ACM. <a href=\"https://doi.org/10.1145/2429069.2429085\">https://doi.org/10.1145/2429069.2429085</a>"},"ec_funded":1,"type":"conference","conference":{"name":"POPL: Principles of Programming Languages","end_date":"2013-01-25","start_date":"2013-07-23","location":"Rome, Italy"},"publication_status":"published","date_created":"2018-12-11T11:56:11Z","abstract":[{"text":"We propose a general framework for abstraction with respect to quantitative properties, such as worst-case execution time, or power consumption. Our framework provides a systematic way for counter-example guided abstraction refinement for quantitative properties. The salient aspect of the framework is that it allows anytime verification, that is, verification algorithms that can be stopped at any time (for example, due to exhaustion of memory), and report approximations that improve monotonically when the algorithms are given more time. We instantiate the framework with a number of quantitative abstractions and refinement schemes, which differ in terms of how much quantitative information they keep from the original system. We introduce both state-based and trace-based quantitative abstractions, and we describe conditions that define classes of quantitative properties for which the abstractions provide over-approximations. We give algorithms for evaluating the quantitative properties on the abstract systems. We present algorithms for counter-example based refinements for quantitative properties for both state-based and segment-based abstractions. We perform a case study on worst-case execution time of executables to evaluate the anytime verification aspect and the quantitative abstractions we proposed.","lang":"eng"}],"author":[{"last_name":"Cerny","first_name":"Pavol","full_name":"Cerny, Pavol","id":"4DCBEFFE-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Henzinger, Thomas A","orcid":"0000−0002−2985−7724","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger"},{"id":"3B51CAC4-F248-11E8-B48F-1D18A9856A87","first_name":"Arjun","full_name":"Radhakrishna, Arjun","last_name":"Radhakrishna"}],"page":"115 - 128","corr_author":"1","_id":"2182","date_published":"2013-01-01T00:00:00Z","department":[{"_id":"ToHe"}],"scopus_import":1,"quality_controlled":"1","language":[{"iso":"eng"}],"doi":"10.1145/2429069.2429085"},{"language":[{"iso":"eng"}],"extern":"1","publication_identifier":{"eissn":["1437-2096"],"issn":["0936-5214"]},"date_published":"2013-10-22T00:00:00Z","page":"2370-2374","abstract":[{"text":"We report a method for preparing electrode–molecule–electrode junctions that incorporate nonsymmetrical azobenzene dithiols. Our approach is based on sequential deprotection of thiol moieties originally carrying two different protecting groups. The azobenzene derivatives retained their switching properties within monolayers and permitted the photocontrol of electrical conductance.","lang":"eng"}],"keyword":["Organic Chemistry"],"citation":{"mla":"Ely, Tal, et al. “Photocontrol of Electrical Conductance with a Nonsymmetrical Azobenzene Dithiol.” <i>Synlett</i>, vol. 24, no. 18, Georg Thieme Verlag, 2013, pp. 2370–74, doi:<a href=\"https://doi.org/10.1055/s-0033-1340087\">10.1055/s-0033-1340087</a>.","apa":"Ely, T., Das, S., Li, W., Kundu, P., Tirosh, E., Cahen, D., … Klajn, R. (2013). Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol. <i>Synlett</i>. Georg Thieme Verlag. <a href=\"https://doi.org/10.1055/s-0033-1340087\">https://doi.org/10.1055/s-0033-1340087</a>","chicago":"Ely, Tal, Sanjib Das, Wenjie Li, Pintu Kundu, Einat Tirosh, David Cahen, Ayelet Vilan, and Rafal Klajn. “Photocontrol of Electrical Conductance with a Nonsymmetrical Azobenzene Dithiol.” <i>Synlett</i>. Georg Thieme Verlag, 2013. <a href=\"https://doi.org/10.1055/s-0033-1340087\">https://doi.org/10.1055/s-0033-1340087</a>.","ama":"Ely T, Das S, Li W, et al. Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol. <i>Synlett</i>. 2013;24(18):2370-2374. doi:<a href=\"https://doi.org/10.1055/s-0033-1340087\">10.1055/s-0033-1340087</a>","ista":"Ely T, Das S, Li W, Kundu P, Tirosh E, Cahen D, Vilan A, Klajn R. 2013. Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol. Synlett. 24(18), 2370–2374.","short":"T. Ely, S. Das, W. Li, P. Kundu, E. Tirosh, D. Cahen, A. Vilan, R. Klajn, Synlett 24 (2013) 2370–2374.","ieee":"T. Ely <i>et al.</i>, “Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol,” <i>Synlett</i>, vol. 24, no. 18. Georg Thieme Verlag, pp. 2370–2374, 2013."},"year":"2013","article_processing_charge":"No","publisher":"Georg Thieme Verlag","intvolume":"        24","title":"Photocontrol of electrical conductance with a nonsymmetrical azobenzene dithiol","day":"22","quality_controlled":"1","doi":"10.1055/s-0033-1340087","scopus_import":"1","article_type":"original","_id":"13405","author":[{"last_name":"Ely","first_name":"Tal","full_name":"Ely, Tal"},{"last_name":"Das","first_name":"Sanjib","full_name":"Das, Sanjib"},{"full_name":"Li, Wenjie","first_name":"Wenjie","last_name":"Li"},{"last_name":"Kundu","full_name":"Kundu, Pintu","first_name":"Pintu"},{"full_name":"Tirosh, Einat","first_name":"Einat","last_name":"Tirosh"},{"full_name":"Cahen, David","first_name":"David","last_name":"Cahen"},{"first_name":"Ayelet","full_name":"Vilan, Ayelet","last_name":"Vilan"},{"last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","full_name":"Klajn, Rafal"}],"date_created":"2023-08-01T09:47:17Z","publication_status":"published","type":"journal_article","issue":"18","volume":24,"date_updated":"2024-10-14T12:21:03Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Synlett","oa_version":"None","status":"public","month":"10"},{"oa_version":"None","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Advanced Materials","month":"01","issue":"3","type":"journal_article","volume":25,"date_updated":"2024-10-14T12:21:16Z","date_created":"2023-08-01T09:47:30Z","pmid":1,"publication_status":"published","scopus_import":"1","doi":"10.1002/adma.201201734","quality_controlled":"1","author":[{"full_name":"Das, Sanjib","first_name":"Sanjib","last_name":"Das"},{"last_name":"Ranjan","full_name":"Ranjan, Priyadarshi","first_name":"Priyadarshi"},{"last_name":"Maiti","full_name":"Maiti, Pradipta Sankar","first_name":"Pradipta Sankar"},{"last_name":"Singh","first_name":"Gurvinder","full_name":"Singh, Gurvinder"},{"first_name":"Gregory","full_name":"Leitus, Gregory","last_name":"Leitus"},{"last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","full_name":"Klajn, Rafal"}],"article_type":"original","_id":"13406","title":"Dual-responsive nanoparticles and their self-assembly","day":"18","external_id":{"pmid":["22933327"]},"year":"2013","citation":{"ieee":"S. Das, P. Ranjan, P. S. Maiti, G. Singh, G. Leitus, and R. Klajn, “Dual-responsive nanoparticles and their self-assembly,” <i>Advanced Materials</i>, vol. 25, no. 3. Wiley, pp. 422–426, 2013.","short":"S. Das, P. Ranjan, P.S. Maiti, G. Singh, G. Leitus, R. Klajn, Advanced Materials 25 (2013) 422–426.","apa":"Das, S., Ranjan, P., Maiti, P. S., Singh, G., Leitus, G., &#38; Klajn, R. (2013). Dual-responsive nanoparticles and their self-assembly. <i>Advanced Materials</i>. Wiley. <a href=\"https://doi.org/10.1002/adma.201201734\">https://doi.org/10.1002/adma.201201734</a>","mla":"Das, Sanjib, et al. “Dual-Responsive Nanoparticles and Their Self-Assembly.” <i>Advanced Materials</i>, vol. 25, no. 3, Wiley, 2013, pp. 422–26, doi:<a href=\"https://doi.org/10.1002/adma.201201734\">10.1002/adma.201201734</a>.","ista":"Das S, Ranjan P, Maiti PS, Singh G, Leitus G, Klajn R. 2013. Dual-responsive nanoparticles and their self-assembly. Advanced Materials. 25(3), 422–426.","ama":"Das S, Ranjan P, Maiti PS, Singh G, Leitus G, Klajn R. Dual-responsive nanoparticles and their self-assembly. <i>Advanced Materials</i>. 2013;25(3):422-426. doi:<a href=\"https://doi.org/10.1002/adma.201201734\">10.1002/adma.201201734</a>","chicago":"Das, Sanjib, Priyadarshi Ranjan, Pradipta Sankar Maiti, Gurvinder Singh, Gregory Leitus, and Rafal Klajn. “Dual-Responsive Nanoparticles and Their Self-Assembly.” <i>Advanced Materials</i>. Wiley, 2013. <a href=\"https://doi.org/10.1002/adma.201201734\">https://doi.org/10.1002/adma.201201734</a>."},"intvolume":"        25","article_processing_charge":"No","publisher":"Wiley","abstract":[{"text":"Dual-responsive nanoparticles are designed by functionalizing magnetic cores with light-responsive ligands. These materials respond to both light and magnetic fields and can be assembled into various higher-order structures, depending on the relative contributions of these two stimuli.","lang":"eng"}],"keyword":["Mechanical Engineering","Mechanics of Materials","General Materials Science"],"publication_identifier":{"issn":["0935-9648"]},"language":[{"iso":"eng"}],"extern":"1","page":"422-426","date_published":"2013-01-18T00:00:00Z"},{"month":"09","pubrep_id":"624","status":"public","oa_version":"Published Version","publist_id":"5837","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"22nd EACSL Annual Conference on Computer Science Logic","date_updated":"2024-10-09T20:55:23Z","volume":23,"type":"conference","has_accepted_license":"1","ec_funded":1,"oa":1,"conference":{"location":"Torino, Italy","start_date":"203-09-02","end_date":"2013-09-05","name":"CSL: Computer Science Logic"},"publication_status":"published","alternative_title":["LIPIcs"],"date_created":"2018-12-11T11:51:39Z","author":[{"last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","first_name":"Krishnendu"},{"last_name":"Fijalkow","first_name":"Nathanaël","full_name":"Fijalkow, Nathanaël"}],"ddc":["000"],"corr_author":"1","_id":"1374","scopus_import":1,"department":[{"_id":"KrCh"}],"quality_controlled":"1","doi":"10.4230/LIPIcs.CSL.2013.181","day":"01","series_title":"Leibniz International Proceedings in Informatics","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"file":[{"date_created":"2018-12-12T10:13:38Z","access_level":"open_access","checksum":"b7091a3866db573c0db5ec486952255e","date_updated":"2020-07-14T12:44:47Z","file_size":547296,"file_id":"5023","creator":"system","relation":"main_file","file_name":"IST-2016-624-v1+1_ChKr_Infinite-state_games_2013_17.pdf","content_type":"application/pdf"}],"title":"Infinite-state games with finitary conditions","intvolume":"        23","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","file_date_updated":"2020-07-14T12:44:47Z","project":[{"name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23","call_identifier":"FWF","_id":"2584A770-B435-11E9-9278-68D0E5697425"},{"_id":"25863FF4-B435-11E9-9278-68D0E5697425","name":"Game Theory","grant_number":"S11407","call_identifier":"FWF"},{"_id":"2581B60A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"279307","name":"Quantitative Graph Games: Theory and Applications"},{"_id":"2587B514-B435-11E9-9278-68D0E5697425","name":"Microsoft Research Faculty Fellowship"}],"year":"2013","citation":{"apa":"Chatterjee, K., &#38; Fijalkow, N. (2013). Infinite-state games with finitary conditions. In <i>22nd EACSL Annual Conference on Computer Science Logic</i> (Vol. 23, pp. 181–196). Torino, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.CSL.2013.181\">https://doi.org/10.4230/LIPIcs.CSL.2013.181</a>","mla":"Chatterjee, Krishnendu, and Nathanaël Fijalkow. “Infinite-State Games with Finitary Conditions.” <i>22nd EACSL Annual Conference on Computer Science Logic</i>, vol. 23, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–96, doi:<a href=\"https://doi.org/10.4230/LIPIcs.CSL.2013.181\">10.4230/LIPIcs.CSL.2013.181</a>.","ista":"Chatterjee K, Fijalkow N. 2013. Infinite-state games with finitary conditions. 22nd EACSL Annual Conference on Computer Science Logic. CSL: Computer Science LogicLeibniz International Proceedings in Informatics, LIPIcs, vol. 23, 181–196.","ama":"Chatterjee K, Fijalkow N. Infinite-state games with finitary conditions. In: <i>22nd EACSL Annual Conference on Computer Science Logic</i>. Vol 23. Leibniz International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2013:181-196. doi:<a href=\"https://doi.org/10.4230/LIPIcs.CSL.2013.181\">10.4230/LIPIcs.CSL.2013.181</a>","chicago":"Chatterjee, Krishnendu, and Nathanaël Fijalkow. “Infinite-State Games with Finitary Conditions.” In <i>22nd EACSL Annual Conference on Computer Science Logic</i>, 23:181–96. Leibniz International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013. <a href=\"https://doi.org/10.4230/LIPIcs.CSL.2013.181\">https://doi.org/10.4230/LIPIcs.CSL.2013.181</a>.","short":"K. Chatterjee, N. Fijalkow, in:, 22nd EACSL Annual Conference on Computer Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–196.","ieee":"K. Chatterjee and N. Fijalkow, “Infinite-state games with finitary conditions,” in <i>22nd EACSL Annual Conference on Computer Science Logic</i>, Torino, Italy, 2013, vol. 23, pp. 181–196."},"abstract":[{"lang":"eng","text":"We study two-player zero-sum games over infinite-state graphs equipped with ωB and finitary conditions. Our first contribution is about the strategy complexity, i.e the memory required for winning strategies: we prove that over general infinite-state graphs, memoryless strategies are sufficient for finitary Büchi, and finite-memory suffices for finitary parity games. We then study pushdown games with boundedness conditions, with two contributions. First we prove a collapse result for pushdown games with ωB-conditions, implying the decidability of solving these games. Second we consider pushdown games with finitary parity along with stack boundedness conditions, and show that solving these games is EXPTIME-complete."}],"page":"181 - 196","date_published":"2013-09-01T00:00:00Z","language":[{"iso":"eng"}]},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publist_id":"5835","publication":"13th International Conference on Formal Methods in Computer-Aided Design","oa_version":"Preprint","status":"public","month":"12","type":"conference","ec_funded":1,"oa":1,"date_updated":"2025-06-26T08:33:43Z","date_created":"2018-12-11T11:51:40Z","publication_status":"published","conference":{"end_date":"2013-10-23","name":"FMCAD: Formal Methods in Computer-Aided Design","location":"Portland, OR, United States","start_date":"2013-10-20"},"quality_controlled":"1","doi":"10.1109/FMCAD.2013.6679386","scopus_import":"1","OA_place":"repository","department":[{"_id":"KrCh"},{"_id":"ToHe"}],"corr_author":"1","_id":"1376","author":[{"full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A","orcid":"0000−0002−2985−7724","first_name":"Thomas A","last_name":"Henzinger"},{"last_name":"Otop","full_name":"Otop, Jan","first_name":"Jan","id":"2FC5DA74-F248-11E8-B48F-1D18A9856A87"},{"id":"49704004-F248-11E8-B48F-1D18A9856A87","first_name":"Andreas","orcid":"0000-0002-8943-0722","full_name":"Pavlogiannis, Andreas","last_name":"Pavlogiannis"}],"related_material":{"record":[{"relation":"earlier_version","status":"public","id":"5406"}]},"title":"Distributed synthesis for LTL fragments","OA_type":"green","day":"11","citation":{"mla":"Chatterjee, Krishnendu, et al. “Distributed Synthesis for LTL Fragments.” <i>13th International Conference on Formal Methods in Computer-Aided Design</i>, IEEE, 2013, pp. 18–25, doi:<a href=\"https://doi.org/10.1109/FMCAD.2013.6679386\">10.1109/FMCAD.2013.6679386</a>.","apa":"Chatterjee, K., Henzinger, T. A., Otop, J., &#38; Pavlogiannis, A. (2013). Distributed synthesis for LTL fragments. In <i>13th International Conference on Formal Methods in Computer-Aided Design</i> (pp. 18–25). Portland, OR, United States: IEEE. <a href=\"https://doi.org/10.1109/FMCAD.2013.6679386\">https://doi.org/10.1109/FMCAD.2013.6679386</a>","chicago":"Chatterjee, Krishnendu, Thomas A Henzinger, Jan Otop, and Andreas Pavlogiannis. “Distributed Synthesis for LTL Fragments.” In <i>13th International Conference on Formal Methods in Computer-Aided Design</i>, 18–25. IEEE, 2013. <a href=\"https://doi.org/10.1109/FMCAD.2013.6679386\">https://doi.org/10.1109/FMCAD.2013.6679386</a>.","ama":"Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. Distributed synthesis for LTL fragments. In: <i>13th International Conference on Formal Methods in Computer-Aided Design</i>. IEEE; 2013:18-25. doi:<a href=\"https://doi.org/10.1109/FMCAD.2013.6679386\">10.1109/FMCAD.2013.6679386</a>","ista":"Chatterjee K, Henzinger TA, Otop J, Pavlogiannis A. 2013. Distributed synthesis for LTL fragments. 13th International Conference on Formal Methods in Computer-Aided Design. FMCAD: Formal Methods in Computer-Aided Design, 18–25.","short":"K. Chatterjee, T.A. Henzinger, J. Otop, A. Pavlogiannis, in:, 13th International Conference on Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 18–25.","ieee":"K. Chatterjee, T. A. Henzinger, J. Otop, and A. Pavlogiannis, “Distributed synthesis for LTL fragments,” in <i>13th International Conference on Formal Methods in Computer-Aided Design</i>, Portland, OR, United States, 2013, pp. 18–25."},"year":"2013","main_file_link":[{"open_access":"1","url":"https://doi.org/10.15479/AT:IST-2013-130-v1-1"}],"article_processing_charge":"No","project":[{"name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23","call_identifier":"FWF","_id":"2584A770-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","name":"Rigorous Systems Engineering","grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425"},{"grant_number":"279307","name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FP7","grant_number":"267989","name":"Quantitative Reactive Modeling","_id":"25EE3708-B435-11E9-9278-68D0E5697425"},{"_id":"2587B514-B435-11E9-9278-68D0E5697425","name":"Microsoft Research Faculty Fellowship"}],"publisher":"IEEE","abstract":[{"text":"We consider the distributed synthesis problem for temporal logic specifications. Traditionally, the problem has been studied for LTL, and the previous results show that the problem is decidable iff there is no information fork in the architecture. We consider the problem for fragments of LTL and our main results are as follows: (1) We show that the problem is undecidable for architectures with information forks even for the fragment of LTL with temporal operators restricted to next and eventually. (2) For specifications restricted to globally along with non-nested next operators, we establish decidability (in EXPSPACE) for star architectures where the processes receive disjoint inputs, whereas we establish undecidability for architectures containing an information fork-meet structure. (3) Finally, we consider LTL without the next operator, and establish decidability (NEXPTIME-complete) for all architectures for a fragment that consists of a set of safety assumptions, and a set of guarantees where each guarantee is a safety, reachability, or liveness condition.","lang":"eng"}],"language":[{"iso":"eng"}],"date_published":"2013-12-11T00:00:00Z","page":"18 - 25"},{"acknowledgement":"This work was supported in part by the Austrian Science Fund NFN RiSE (Rigorous Systems Engineering) and by the ERC Advanced Grant QUAREM (Quantitative Reactve Modeling).\r\nChapter 2, 3, and 4 are joint work with Thomas A. Henzinger and Thomas Wies. Chapter 2 was published in FoSSaCS 2010 as “Forward Analysis of Depth-Bounded Processes” [112]. Chapter 3 was published in VMCAI 2012 as “Ideal Abstractions for Well-Structured Transition Systems” [114]. Chap- ter 5.1 is joint work with Kshitij Bansal, Eric Koskinen, and Thomas Wies. It was published in TACAS 2013 as “Structural Counter Abstraction” [13]. The author’s contribution in this part is mostly related to the implementation. The theory required to understand the method and its implementation is quickly recalled to make the thesis self-contained, but should not be considered as a contribution. For the details of the methods, we refer the reader to the orig- inal publication [13] and the corresponding technical report [14]. Chapter 5.2 is ongoing work with Shahram Esmaeilsabzali, Rupak Majumdar, and Thomas Wies. I also would like to thank the people who supported over the past 4 years. My advisor Thomas A. Henzinger who gave me a lot of freedom to work on projects I was interested in. My collaborators, especially Thomas Wies with whom I worked since the beginning. The members of my thesis committee, Viktor Kun- cak and Rupak Majumdar, who also agreed to advise me. Simon Aeschbacher, Pavol Cerny, Cezara Dragoi, Arjun Radhakrishna, my family, friends and col- leagues who created an enjoyable environment. ","publication_status":"published","alternative_title":["ISTA Thesis"],"date_created":"2018-12-11T11:51:50Z","ddc":["000"],"corr_author":"1","_id":"1405","supervisor":[{"full_name":"Henzinger, Thomas A","orcid":"0000−0002−2985−7724","first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger"}],"author":[{"last_name":"Zufferey","full_name":"Zufferey, Damien","orcid":"0000-0002-3197-8736","first_name":"Damien","id":"4397AC76-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"record":[{"id":"4361","relation":"part_of_dissertation","status":"public"},{"relation":"part_of_dissertation","status":"public","id":"3251"},{"relation":"part_of_dissertation","status":"public","id":"2847"}]},"doi":"10.15479/at:ista:1405","department":[{"_id":"ToHe"},{"_id":"GradSch"}],"OA_place":"publisher","degree_awarded":"PhD","month":"09","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","publist_id":"5802","status":"public","oa_version":"Published Version","date_updated":"2026-04-09T14:35:24Z","ec_funded":1,"type":"dissertation","has_accepted_license":"1","oa":1,"abstract":[{"lang":"eng","text":"Motivated by the analysis of highly dynamic message-passing systems, i.e. unbounded thread creation, mobility, etc. we present a framework for the analysis of depth-bounded systems. Depth-bounded systems are one of the most expressive known fragment of the π-calculus for which interesting verification problems are still decidable. Even though they are infinite state systems depth-bounded systems are well-structured, thus can be analyzed algorithmically. We give an interpretation of depth-bounded systems as graph-rewriting systems. This gives more flexibility and ease of use to apply depth-bounded systems to other type of systems like shared memory concurrency.\r\n\r\nFirst, we develop an adequate domain of limits for depth-bounded systems, a prerequisite for the effective representation of downward-closed sets. Downward-closed sets are needed by forward saturation-based algorithms to represent potentially infinite sets of states. Then, we present an abstract interpretation framework to compute the covering set of well-structured transition systems. Because, in general, the covering set is not computable, our abstraction over-approximates the actual covering set. Our abstraction captures the essence of acceleration based-algorithms while giving up enough precision to ensure convergence. We have implemented the analysis in the PICASSO tool and show that it is accurate in practice. Finally, we build some further analyses like termination using the covering set as starting point."}],"date_published":"2013-09-05T00:00:00Z","page":"134","language":[{"iso":"eng"}],"publication_identifier":{"issn":["2663-337X"]},"day":"05","file":[{"file_size":1514906,"date_updated":"2021-02-22T11:28:36Z","checksum":"ed2d7b52933d134e8dc69d569baa284e","file_id":"9176","creator":"dernst","relation":"main_file","content_type":"application/pdf","file_name":"2013_Zufferey_thesis_final.pdf","success":1,"date_created":"2021-02-22T11:28:36Z","access_level":"open_access"},{"date_created":"2021-11-16T14:42:52Z","access_level":"closed","creator":"cchlebak","checksum":"cecc4c4b14225bee973d32e3dba91a55","file_size":1378313,"date_updated":"2021-11-17T13:47:58Z","file_id":"10298","content_type":"application/pdf","file_name":"2013_Zufferey_thesis_final_pdfa.pdf","relation":"main_file"}],"title":"Analysis of dynamic message passing programs","article_processing_charge":"No","main_file_link":[{"url":"http://dzufferey.github.io/files/2013_thesis.pdf"}],"file_date_updated":"2021-11-17T13:47:58Z","project":[{"_id":"25832EC2-B435-11E9-9278-68D0E5697425","name":"Rigorous Systems Engineering","grant_number":"S 11407_N23","call_identifier":"FWF"},{"_id":"25EE3708-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"267989","name":"Quantitative Reactive Modeling"}],"publisher":"Institute of Science and Technology Austria","citation":{"short":"D. Zufferey, Analysis of Dynamic Message Passing Programs, Institute of Science and Technology Austria, 2013.","ieee":"D. Zufferey, “Analysis of dynamic message passing programs,” Institute of Science and Technology Austria, 2013.","apa":"Zufferey, D. (2013). <i>Analysis of dynamic message passing programs</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/at:ista:1405\">https://doi.org/10.15479/at:ista:1405</a>","mla":"Zufferey, Damien. <i>Analysis of Dynamic Message Passing Programs</i>. Institute of Science and Technology Austria, 2013, doi:<a href=\"https://doi.org/10.15479/at:ista:1405\">10.15479/at:ista:1405</a>.","ista":"Zufferey D. 2013. Analysis of dynamic message passing programs. Institute of Science and Technology Austria.","ama":"Zufferey D. Analysis of dynamic message passing programs. 2013. doi:<a href=\"https://doi.org/10.15479/at:ista:1405\">10.15479/at:ista:1405</a>","chicago":"Zufferey, Damien. “Analysis of Dynamic Message Passing Programs.” Institute of Science and Technology Austria, 2013. <a href=\"https://doi.org/10.15479/at:ista:1405\">https://doi.org/10.15479/at:ista:1405</a>."},"year":"2013"},{"extern":1,"quality_controlled":0,"doi":"10.4007/annals.2013.177.3.8","page":"1147 - 1168","author":[{"id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","full_name":"Tamas Hausel","first_name":"Tamas","last_name":"Hausel"},{"last_name":"Letellier","first_name":"Emmanuel","full_name":"Letellier, Emmanuel"},{"last_name":"Rodríguez Villegas","first_name":"Fernando","full_name":"Rodríguez Villegas, Fernando"}],"_id":"1442","date_published":"2013-01-01T00:00:00Z","date_created":"2018-12-11T11:52:02Z","abstract":[{"text":"We give a cohomological interpretation of both the Kac polynomial and the refined Donaldson-Thomas-invariants of quivers. This interpretation yields a proof of a conjecture of Kac from 1982 and gives a new perspective on recent work of Kontsevich-Soibelman. Thisis achieved by computing, via an arithmetic Fourier transform, the dimensions of the isotypical components of the cohomology of associated Nakajima quiver varieties under the action of a Weyl group. The generating function of the corresponding Poincare polynomials is an extension of Hua's formula for Kac polynomials of quivers involving Hall-Littlewood symmetric functions. The resulting formulae contain a wide range of information on the geometry of the quiver varieties.","lang":"eng"}],"acknowledgement":"The first author thanks the Royal Society for funding his research 2005-2012 in the form of a Royal Society University Research Fellowship as well as the Mathematical Institute and Wadham College in Oxford for a very productive environment. The second author is supported by Agence Nationale de la Recherche grant\nANR-09-JCJC-0102-01. The third author is supported by the NSF grant DMS-1101484 and a Research Scholarship from the Clay Mathematical Institute.","publication_status":"published","year":"2013","issue":"3","citation":{"ieee":"T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Positivity for Kac polynomials and DT-invariants of quivers,” <i>Annals of Mathematics</i>, vol. 177, no. 3. Princeton University Press, pp. 1147–1168, 2013.","short":"T. Hausel, E. Letellier, F. Rodríguez Villegas, Annals of Mathematics 177 (2013) 1147–1168.","apa":"Hausel, T., Letellier, E., &#38; Rodríguez Villegas, F. (2013). Positivity for Kac polynomials and DT-invariants of quivers. <i>Annals of Mathematics</i>. Princeton University Press. <a href=\"https://doi.org/10.4007/annals.2013.177.3.8\">https://doi.org/10.4007/annals.2013.177.3.8</a>","mla":"Hausel, Tamás, et al. “Positivity for Kac Polynomials and DT-Invariants of Quivers.” <i>Annals of Mathematics</i>, vol. 177, no. 3, Princeton University Press, 2013, pp. 1147–68, doi:<a href=\"https://doi.org/10.4007/annals.2013.177.3.8\">10.4007/annals.2013.177.3.8</a>.","ista":"Hausel T, Letellier E, Rodríguez Villegas F. 2013. Positivity for Kac polynomials and DT-invariants of quivers. Annals of Mathematics. 177(3), 1147–1168.","ama":"Hausel T, Letellier E, Rodríguez Villegas F. Positivity for Kac polynomials and DT-invariants of quivers. <i>Annals of Mathematics</i>. 2013;177(3):1147-1168. doi:<a href=\"https://doi.org/10.4007/annals.2013.177.3.8\">10.4007/annals.2013.177.3.8</a>","chicago":"Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Positivity for Kac Polynomials and DT-Invariants of Quivers.” <i>Annals of Mathematics</i>. Princeton University Press, 2013. <a href=\"https://doi.org/10.4007/annals.2013.177.3.8\">https://doi.org/10.4007/annals.2013.177.3.8</a>."},"oa":1,"type":"journal_article","date_updated":"2021-01-12T06:50:47Z","volume":177,"intvolume":"       177","publisher":"Princeton University Press","main_file_link":[{"url":"http://arxiv.org/abs/1204.2375","open_access":"1"}],"status":"public","publication":"Annals of Mathematics","title":"Positivity for Kac polynomials and DT-invariants of quivers","publist_id":"5754","month":"01","day":"01"},{"quality_controlled":0,"extern":1,"author":[{"first_name":"Tamas","full_name":"Tamas Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","last_name":"Hausel"}],"page":"29 - 70","date_published":"2013-03-15T00:00:00Z","_id":"1443","abstract":[{"lang":"eng","text":"Here we survey several results and conjectures on the cohomology of the total space of the Hitchin system: the moduli space of semi-stable rank n and degree d Higgs bundles on a complex algebraic curve C. The picture emerging is a dynamic mixture of ideas originating in theoretical physics such as gauge theory and mirror symmetry, Weil conjectures in arithmetic algebraic geometry, representation theory of finite groups of Lie type and Langlands duality in number theory."}],"date_created":"2018-12-11T11:52:03Z","publication_status":"published","alternative_title":["Advanced Lectures in Mathematics"],"year":"2013","type":"book_chapter","oa":1,"citation":{"short":"T. Hausel, in:, Handbook of Moduli: Volume II, International Press, 2013, pp. 29–70.","ieee":"T. Hausel, “Global topology of the Hitchin system,” in <i>Handbook of Moduli: Volume II</i>, vol. 25, International Press, 2013, pp. 29–70.","apa":"Hausel, T. (2013). Global topology of the Hitchin system. In <i>Handbook of Moduli: Volume II</i> (Vol. 25, pp. 29–70). International Press.","mla":"Hausel, Tamás. “Global Topology of the Hitchin System.” <i>Handbook of Moduli: Volume II</i>, vol. 25, International Press, 2013, pp. 29–70.","ista":"Hausel T. 2013.Global topology of the Hitchin system. In: Handbook of Moduli: Volume II. Advanced Lectures in Mathematics, vol. 25, 29–70.","ama":"Hausel T. Global topology of the Hitchin system. In: <i>Handbook of Moduli: Volume II</i>. Vol 25. International Press; 2013:29-70.","chicago":"Hausel, Tamás. “Global Topology of the Hitchin System.” In <i>Handbook of Moduli: Volume II</i>, 25:29–70. International Press, 2013."},"intvolume":"        25","volume":25,"date_updated":"2021-01-12T06:50:47Z","main_file_link":[{"url":"http://arxiv.org/abs/1102.1717","open_access":"1"}],"publisher":"International Press","status":"public","publist_id":"5753","publication":"Handbook of Moduli: Volume II","title":"Global topology of the Hitchin system","day":"15","month":"03"},{"author":[{"id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","first_name":"Tamas","full_name":"Tamas Hausel","last_name":"Hausel"},{"full_name":"Letellier, Emmanuel","first_name":"Emmanuel","last_name":"Letellier"},{"first_name":"Fernando","full_name":"Rodríguez Villegas, Fernando","last_name":"Rodríguez Villegas"}],"page":"85 - 128","date_published":"2013-02-15T00:00:00Z","_id":"1469","quality_controlled":0,"doi":"10.1016/j.aim.2012.10.009","extern":1,"acknowledgement":"During the preparation of this paper TH was supported by a Royal Society University Research Fellowship at the University of Oxford. EL was supported by ANR-09-JCJC-0102-01. FRV was supported by NSF grant DMS-0200605, an FRA from the University of Texas at Austin, EPSRC grant EP/G027110/1, Visiting Fellowships at All Souls and Wadham Colleges in Oxford and a Research Scholarship from the Clay Mathematical Institute.","publication_status":"published","abstract":[{"text":"We study connections between the topology of generic character varieties of fundamental groups of punctured Riemann surfaces, Macdonald polynomials, quiver representations, Hilbert schemes on Cx × Cx, modular forms and multiplicities in tensor products of irreducible characters of finite general linear groups.","lang":"eng"}],"date_created":"2018-12-11T11:52:12Z","intvolume":"       234","volume":234,"date_updated":"2021-01-12T06:50:57Z","publisher":"Academic Press","year":"2013","type":"journal_article","citation":{"short":"T. Hausel, E. Letellier, F. Rodríguez Villegas, Advances in Mathematics 234 (2013) 85–128.","ieee":"T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Arithmetic harmonic analysis on character and quiver varieties II,” <i>Advances in Mathematics</i>, vol. 234. Academic Press, pp. 85–128, 2013.","ama":"Hausel T, Letellier E, Rodríguez Villegas F. Arithmetic harmonic analysis on character and quiver varieties II. <i>Advances in Mathematics</i>. 2013;234:85-128. doi:<a href=\"https://doi.org/10.1016/j.aim.2012.10.009\">10.1016/j.aim.2012.10.009</a>","ista":"Hausel T, Letellier E, Rodríguez Villegas F. 2013. Arithmetic harmonic analysis on character and quiver varieties II. Advances in Mathematics. 234, 85–128.","chicago":"Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Arithmetic Harmonic Analysis on Character and Quiver Varieties II.” <i>Advances in Mathematics</i>. Academic Press, 2013. <a href=\"https://doi.org/10.1016/j.aim.2012.10.009\">https://doi.org/10.1016/j.aim.2012.10.009</a>.","apa":"Hausel, T., Letellier, E., &#38; Rodríguez Villegas, F. (2013). Arithmetic harmonic analysis on character and quiver varieties II. <i>Advances in Mathematics</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.aim.2012.10.009\">https://doi.org/10.1016/j.aim.2012.10.009</a>","mla":"Hausel, Tamás, et al. “Arithmetic Harmonic Analysis on Character and Quiver Varieties II.” <i>Advances in Mathematics</i>, vol. 234, Academic Press, 2013, pp. 85–128, doi:<a href=\"https://doi.org/10.1016/j.aim.2012.10.009\">10.1016/j.aim.2012.10.009</a>."},"month":"02","day":"15","status":"public","publist_id":"5724","title":"Arithmetic harmonic analysis on character and quiver varieties II","publication":"Advances in Mathematics"},{"page":"23 - 38","author":[{"last_name":"De Cataldo","first_name":"Mark","full_name":"De Cataldo, Mark A"},{"first_name":"Tamas","full_name":"Tamas Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","last_name":"Hausel"},{"last_name":"Migliorini","full_name":"Migliorini, Luca","first_name":"Luca"}],"_id":"1470","date_published":"2013-01-01T00:00:00Z","extern":1,"quality_controlled":0,"doi":"10.5427/jsing.2013.7c","acknowledgement":"Mark Andrea A. de Cataldo was partially supported by N.S.A. and N.S.F. Tamás Hausel was supported by a Royal Society University Research Fellowship. Luca Migliorini was partially supported by PRIN 2007 project \"Spazi di moduli e teoria di Lie\"","publication_status":"published","date_created":"2018-12-11T11:52:12Z","abstract":[{"lang":"eng","text":"We show that a natural isomorphism between the rational cohomology groups of the two zero-dimensional Hilbert schemes of n-points of two surfaces, the affine plane minus the axes and the cotangent bundle of an elliptic curve, exchanges the weight filtration on the first set of cohomology groups with the perverse Leray filtration associated with a natural fibration on the second set of cohomology groups. We discuss some associated hard Lefschetz phenomena."}],"volume":7,"date_updated":"2021-01-12T06:50:58Z","intvolume":"         7","publisher":"Worldwide Center of Mathematics","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1012.2583"}],"year":"2013","oa":1,"citation":{"short":"M. De Cataldo, T. Hausel, L. Migliorini, Journal of Singularities 7 (2013) 23–38.","ieee":"M. De Cataldo, T. Hausel, and L. Migliorini, “Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces,” <i>Journal of Singularities</i>, vol. 7. Worldwide Center of Mathematics, pp. 23–38, 2013.","apa":"De Cataldo, M., Hausel, T., &#38; Migliorini, L. (2013). Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces. <i>Journal of Singularities</i>. Worldwide Center of Mathematics. <a href=\"https://doi.org/10.5427/jsing.2013.7c\">https://doi.org/10.5427/jsing.2013.7c</a>","mla":"De Cataldo, Mark, et al. “Exchange between Perverse and Weight Filtration for the Hilbert Schemes of Points of Two Surfaces.” <i>Journal of Singularities</i>, vol. 7, Worldwide Center of Mathematics, 2013, pp. 23–38, doi:<a href=\"https://doi.org/10.5427/jsing.2013.7c\">10.5427/jsing.2013.7c</a>.","ista":"De Cataldo M, Hausel T, Migliorini L. 2013. Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces. Journal of Singularities. 7, 23–38.","ama":"De Cataldo M, Hausel T, Migliorini L. Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces. <i>Journal of Singularities</i>. 2013;7:23-38. doi:<a href=\"https://doi.org/10.5427/jsing.2013.7c\">10.5427/jsing.2013.7c</a>","chicago":"De Cataldo, Mark, Tamás Hausel, and Luca Migliorini. “Exchange between Perverse and Weight Filtration for the Hilbert Schemes of Points of Two Surfaces.” <i>Journal of Singularities</i>. Worldwide Center of Mathematics, 2013. <a href=\"https://doi.org/10.5427/jsing.2013.7c\">https://doi.org/10.5427/jsing.2013.7c</a>."},"type":"journal_article","day":"01","month":"01","status":"public","title":"Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces","publication":"Journal of Singularities","publist_id":"5725"},{"date_created":"2024-03-21T07:58:57Z","publication_status":"published","quality_controlled":"1","doi":"10.1039/c3mb70245f","scopus_import":"1","_id":"15162","article_type":"original","author":[{"first_name":"Marcos H.","full_name":"Woehrmann, Marcos H.","last_name":"Woehrmann"},{"full_name":"Bray, Walter M.","first_name":"Walter M.","last_name":"Bray"},{"full_name":"Durbin, James K.","first_name":"James K.","last_name":"Durbin"},{"last_name":"Nisam","full_name":"Nisam, Sean C.","first_name":"Sean C."},{"last_name":"Michael","full_name":"Michael, Alicia Kathleen","first_name":"Alicia Kathleen","id":"6437c950-2a03-11ee-914d-d6476dd7b75c"},{"last_name":"Glassey","full_name":"Glassey, Emerson","first_name":"Emerson"},{"last_name":"Stuart","first_name":"Joshua M.","full_name":"Stuart, Joshua M."},{"last_name":"Lokey","full_name":"Lokey, R. Scott","first_name":"R. Scott"}],"publication":"Molecular BioSystems","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"None","status":"public","month":"08","type":"journal_article","issue":"11","volume":9,"date_updated":"2024-03-25T11:45:46Z","abstract":[{"lang":"eng","text":"Cytological profiling (CP) is an unbiased image-based screening technique that uses automated microscopy and image analysis to profile compounds based on numerous quantifiable phenotypic features. We used CP to evaluate a library of nearly 500 compounds with documented mechanisms of action (MOAs) spanning a wide range of biological pathways. We developed informatics techniques for generating dosage-independent phenotypic “fingerprints” for each compound, and for quantifying the likelihood that a compound's CP fingerprint corresponds to its annotated MOA. We identified groups of features that distinguish classes with closely related phenotypes, such as microtubule poisons vs. HSP90 inhibitors, and DNA synthesis vs. proteasome inhibitors. We tested several cases in which cytological profiles indicated novel mechanisms, including a tyrphostin kinase inhibitor involved in mitochondrial uncoupling, novel microtubule poisons, and a nominal PPAR-gamma ligand that acts as a proteasome inhibitor, using independent biochemical assays to confirm the MOAs predicted by the CP signatures. We also applied maximal-information statistics to identify correlations between cytological features and kinase inhibitory activities by combining the CP fingerprints of 24 kinase inhibitors with published data on their specificities against a diverse panel of kinases. The resulting analysis suggests a strategy for probing the biological functions of specific kinases by compiling cytological data from inhibitors of varying specificities."}],"keyword":["Molecular Biology","Biotechnology"],"extern":"1","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1742-2051"],"issn":["1742-206X"]},"date_published":"2013-08-20T00:00:00Z","title":"Large-scale cytological profiling for functional analysis of bioactive compounds","article_number":"2604","day":"20","citation":{"mla":"Woehrmann, Marcos H., et al. “Large-Scale Cytological Profiling for Functional Analysis of Bioactive Compounds.” <i>Molecular BioSystems</i>, vol. 9, no. 11, 2604, Royal Society of Chemistry, 2013, doi:<a href=\"https://doi.org/10.1039/c3mb70245f\">10.1039/c3mb70245f</a>.","apa":"Woehrmann, M. H., Bray, W. M., Durbin, J. K., Nisam, S. C., Michael, A. K., Glassey, E., … Lokey, R. S. (2013). Large-scale cytological profiling for functional analysis of bioactive compounds. <i>Molecular BioSystems</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c3mb70245f\">https://doi.org/10.1039/c3mb70245f</a>","chicago":"Woehrmann, Marcos H., Walter M. Bray, James K. Durbin, Sean C. Nisam, Alicia K. Michael, Emerson Glassey, Joshua M. Stuart, and R. Scott Lokey. “Large-Scale Cytological Profiling for Functional Analysis of Bioactive Compounds.” <i>Molecular BioSystems</i>. Royal Society of Chemistry, 2013. <a href=\"https://doi.org/10.1039/c3mb70245f\">https://doi.org/10.1039/c3mb70245f</a>.","ama":"Woehrmann MH, Bray WM, Durbin JK, et al. Large-scale cytological profiling for functional analysis of bioactive compounds. <i>Molecular BioSystems</i>. 2013;9(11). doi:<a href=\"https://doi.org/10.1039/c3mb70245f\">10.1039/c3mb70245f</a>","ista":"Woehrmann MH, Bray WM, Durbin JK, Nisam SC, Michael AK, Glassey E, Stuart JM, Lokey RS. 2013. Large-scale cytological profiling for functional analysis of bioactive compounds. Molecular BioSystems. 9(11), 2604.","short":"M.H. Woehrmann, W.M. Bray, J.K. Durbin, S.C. Nisam, A.K. Michael, E. Glassey, J.M. Stuart, R.S. Lokey, Molecular BioSystems 9 (2013).","ieee":"M. H. Woehrmann <i>et al.</i>, “Large-scale cytological profiling for functional analysis of bioactive compounds,” <i>Molecular BioSystems</i>, vol. 9, no. 11. Royal Society of Chemistry, 2013."},"year":"2013","publisher":"Royal Society of Chemistry","article_processing_charge":"No","intvolume":"         9"},{"quality_controlled":0,"doi":"10.1042/BST20130193","extern":1,"date_published":"2013-10-01T00:00:00Z","_id":"1977","author":[{"orcid":"0000-0002-0977-7989","first_name":"Leonid A","full_name":"Leonid Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","last_name":"Sazanov"},{"last_name":"Baradaran","full_name":"Baradaran, Rozbeh ","first_name":"Rozbeh"},{"first_name":"Rouslan","full_name":"Efremov, Rouslan G","last_name":"Efremov"},{"last_name":"Berrisford","full_name":"Berrisford, John M","first_name":"John"},{"last_name":"Minhas","full_name":"Minhas, Gurdeep S","first_name":"Gurdeep"}],"page":"1265 - 1271","abstract":[{"text":"Complex I (NADH:ubiquinone oxidoreductase) is central to cellular energy production, being the first and largest enzyme of the respiratory chain in mitochondria. It couples electron transfer from NADH to ubiquinone with proton translocation across the inner mitochondrial membrane and is involved in a wide range of human neurodegenerative disorders. Mammalian complex I is composed of 44 different subunits, whereas the 'minimal' bacterial version contains 14 highly conserved 'core' subunits. The L-shaped assembly consists of hydrophilic and membrane domains. We have determined all known atomic structures of complex I, starting from the hydrophilic domain of Thermus thermophilus enzyme (eight subunits, nine Fe-S clusters), followed by the membrane domains of the Escherichia coli (six subunits, 55 transmembrane helices) and T. thermophilus (seven subunits, 64 transmembrane helices) enzymes, and finally culminating in a recent crystal structure of the entire intact complex I from T. thermophilus (536 kDa, 16 subunits, nine Fe-S clusters, 64 transmembrane helices). The structure suggests an unusual and unique coupling mechanism via longrange conformational changes. Determination of the structure of the entire complex was possible only through this step-by-step approach, building on from smaller subcomplexes towards the entire assembly. Large membrane proteins are notoriously difficult to crystallize, and so various non-standard and sometimes counterintuitive approaches were employed in order to achieve crystal diffraction to high resolution and solve the structures. These steps, as well as the implications from the final structure, are discussed in the present review.","lang":"eng"}],"date_created":"2018-12-11T11:55:00Z","acknowledgement":"This work was funded by the Medical Research Council.","publication_status":"published","type":"journal_article","citation":{"ieee":"L. A. Sazanov, R. Baradaran, R. Efremov, J. Berrisford, and G. Minhas, “A long road towards the structure of respiratory complex I, a giant molecular proton pump,” <i>Biochemical Society Transactions</i>, vol. 41, no. 5. Portland Press, pp. 1265–1271, 2013.","short":"L.A. Sazanov, R. Baradaran, R. Efremov, J. Berrisford, G. Minhas, Biochemical Society Transactions 41 (2013) 1265–1271.","mla":"Sazanov, Leonid A., et al. “A Long Road towards the Structure of Respiratory Complex I, a Giant Molecular Proton Pump.” <i>Biochemical Society Transactions</i>, vol. 41, no. 5, Portland Press, 2013, pp. 1265–71, doi:<a href=\"https://doi.org/10.1042/BST20130193\">10.1042/BST20130193</a>.","apa":"Sazanov, L. A., Baradaran, R., Efremov, R., Berrisford, J., &#38; Minhas, G. (2013). A long road towards the structure of respiratory complex I, a giant molecular proton pump. <i>Biochemical Society Transactions</i>. Portland Press. <a href=\"https://doi.org/10.1042/BST20130193\">https://doi.org/10.1042/BST20130193</a>","chicago":"Sazanov, Leonid A, Rozbeh Baradaran, Rouslan Efremov, John Berrisford, and Gurdeep Minhas. “A Long Road towards the Structure of Respiratory Complex I, a Giant Molecular Proton Pump.” <i>Biochemical Society Transactions</i>. Portland Press, 2013. <a href=\"https://doi.org/10.1042/BST20130193\">https://doi.org/10.1042/BST20130193</a>.","ista":"Sazanov LA, Baradaran R, Efremov R, Berrisford J, Minhas G. 2013. A long road towards the structure of respiratory complex I, a giant molecular proton pump. Biochemical Society Transactions. 41(5), 1265–1271.","ama":"Sazanov LA, Baradaran R, Efremov R, Berrisford J, Minhas G. A long road towards the structure of respiratory complex I, a giant molecular proton pump. <i>Biochemical Society Transactions</i>. 2013;41(5):1265-1271. doi:<a href=\"https://doi.org/10.1042/BST20130193\">10.1042/BST20130193</a>"},"issue":"5","year":"2013","publisher":"Portland Press","intvolume":"        41","volume":41,"date_updated":"2021-01-12T06:54:28Z","publist_id":"5106","publication":"Biochemical Society Transactions","title":"A long road towards the structure of respiratory complex I, a giant molecular proton pump","status":"public","day":"01","month":"10"},{"article_processing_charge":"No","publisher":"Frontiers Research Foundation","file_date_updated":"2020-07-14T12:46:35Z","intvolume":"         7","citation":{"apa":"Dickerson, D., &#38; Bilkey, D. (2013). Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions. <i>Frontiers in Behavioral Neuroscience</i>. Frontiers Research Foundation. <a href=\"https://doi.org/10.3389/fnbeh.2013.00217\">https://doi.org/10.3389/fnbeh.2013.00217</a>","mla":"Dickerson, Desiree, and David Bilkey. “Aberrant Neural Synchrony in the Maternal Immune Activation Model: Using Translatable Measures to Explore Targeted Interventions.” <i>Frontiers in Behavioral Neuroscience</i>, vol. 7, no. DEC, Frontiers Research Foundation, 2013, doi:<a href=\"https://doi.org/10.3389/fnbeh.2013.00217\">10.3389/fnbeh.2013.00217</a>.","ista":"Dickerson D, Bilkey D. 2013. Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions. Frontiers in Behavioral Neuroscience. 7(DEC).","ama":"Dickerson D, Bilkey D. Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions. <i>Frontiers in Behavioral Neuroscience</i>. 2013;7(DEC). doi:<a href=\"https://doi.org/10.3389/fnbeh.2013.00217\">10.3389/fnbeh.2013.00217</a>","chicago":"Dickerson, Desiree, and David Bilkey. “Aberrant Neural Synchrony in the Maternal Immune Activation Model: Using Translatable Measures to Explore Targeted Interventions.” <i>Frontiers in Behavioral Neuroscience</i>. Frontiers Research Foundation, 2013. <a href=\"https://doi.org/10.3389/fnbeh.2013.00217\">https://doi.org/10.3389/fnbeh.2013.00217</a>.","short":"D. Dickerson, D. Bilkey, Frontiers in Behavioral Neuroscience 7 (2013).","ieee":"D. Dickerson and D. Bilkey, “Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions,” <i>Frontiers in Behavioral Neuroscience</i>, vol. 7, no. DEC. Frontiers Research Foundation, 2013."},"year":"2013","external_id":{"isi":["000329175600001"]},"day":"27","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"file":[{"access_level":"open_access","date_created":"2018-12-12T10:15:10Z","file_name":"IST-2018-953-v1+1_2013_Dickerson_Aberrant_neural.pdf","content_type":"application/pdf","relation":"main_file","creator":"system","file_id":"5128","file_size":530134,"date_updated":"2020-07-14T12:46:35Z","checksum":"cd7183121e56251176100ccac165c95c"}],"title":"Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions","date_published":"2013-12-27T00:00:00Z","language":[{"iso":"eng"}],"abstract":[{"text":"Maternal exposure to infection occurring mid-gestation produces a three-fold increase in the risk of schizophrenia in the offspring. The critical initiating factor appears to be the maternal immune activation (MIA) that follows infection. This process can be induced in rodents by exposure of pregnant dams to the viral mimic Poly I:C, which triggers an immune response that results in structural, functional, behavioral, and electrophysiological phenotypes in the adult offspring that model those seen in schizophrenia. We used this model to explore the role of synchronization in brain neural networks, a process thought to be dysfunctional in schizophrenia and previously associated with positive, negative, and cognitive symptoms of schizophrenia. Exposure of pregnant dams to Poly I:C on GD15 produced an impairment in long-range neural synchrony in adult offspring between two regions implicated in schizophrenia pathology; the hippocampus and the medial prefrontal cortex (mPFC). This reduction in synchrony was ameliorated by acute doses of the antipsychotic clozapine. MIA animals have previously been shown to have impaired pre-pulse inhibition (PPI), a gold-standard measure of schizophrenia-like deficits in animal models. Our data showed that deficits in synchrony were positively correlated with the impairments in PPI. Subsequent analysis of LFP activity during the PPI response also showed that reduced coupling between the mPFC and the hippocampus following processing of the pre-pulse was associated with reduced PPI. The ability of the MIA intervention to model neurodevelopmental aspects of schizophrenia pathology provides a useful platform from which to investigate the ontogeny of aberrant synchronous processes. Further, the way in which the model expresses translatable deficits such as aberrant synchrony and reduced PPI will allow researchers to explore novel intervention strategies targeted to these changes. ","lang":"eng"}],"isi":1,"volume":7,"date_updated":"2025-09-30T07:30:04Z","type":"journal_article","has_accepted_license":"1","oa":1,"issue":"DEC","month":"12","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publist_id":"7346","publication":"Frontiers in Behavioral Neuroscience","oa_version":"Published Version","pubrep_id":"953","status":"public","ddc":["571"],"_id":"476","author":[{"id":"444EB89E-F248-11E8-B48F-1D18A9856A87","first_name":"Desiree","full_name":"Dickerson, Desiree","last_name":"Dickerson"},{"last_name":"Bilkey","first_name":"David","full_name":"Bilkey, David"}],"doi":"10.3389/fnbeh.2013.00217","quality_controlled":"1","department":[{"_id":"JoCs"}],"publication_status":"published","date_created":"2018-12-11T11:46:41Z"},{"doi":"10.1126/science.1229858","quality_controlled":"1","scopus_import":"1","department":[{"_id":"CaGu"},{"_id":"GaTk"}],"_id":"499","author":[{"first_name":"Yurichi","full_name":"Wakamoto, Yurichi","last_name":"Wakamoto"},{"last_name":"Dhar","first_name":"Neraaj","full_name":"Dhar, Neraaj"},{"last_name":"Chait","id":"3464AE84-F248-11E8-B48F-1D18A9856A87","full_name":"Chait, Remy P","first_name":"Remy P","orcid":"0000-0003-0876-3187"},{"first_name":"Katrin","full_name":"Schneider, Katrin","last_name":"Schneider"},{"last_name":"Signorino Gelo","first_name":"François","full_name":"Signorino Gelo, François"},{"first_name":"Stanislas","full_name":"Leibler, Stanislas","last_name":"Leibler"},{"last_name":"Mckinney","full_name":"Mckinney, John","first_name":"John"}],"date_created":"2018-12-11T11:46:48Z","publication_status":"published","type":"journal_article","issue":"6115","volume":339,"date_updated":"2025-09-30T07:29:30Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publist_id":"7321","publication":"Science","status":"public","oa_version":"None","month":"01","language":[{"iso":"eng"}],"date_published":"2013-01-04T00:00:00Z","page":"91 - 95","abstract":[{"text":"Exposure of an isogenic bacterial population to a cidal antibiotic typically fails to eliminate a small fraction of refractory cells. Historically, fractional killing has been attributed to infrequently dividing or nondividing &quot;persisters.&quot; Using microfluidic cultures and time-lapse microscopy, we found that Mycobacterium smegmatis persists by dividing in the presence of the drug isoniazid (INH). Although persistence in these studies was characterized by stable numbers of cells, this apparent stability was actually a dynamic state of balanced division and death. Single cells expressed catalase-peroxidase (KatG), which activates INH, in stochastic pulses that were negatively correlated with cell survival. These behaviors may reflect epigenetic effects, because KatG pulsing and death were correlated between sibling cells. Selection of lineages characterized by infrequent KatG pulsing could allow nonresponsive adaptation during prolonged drug exposure.","lang":"eng"}],"isi":1,"citation":{"ieee":"Y. Wakamoto <i>et al.</i>, “Dynamic persistence of antibiotic-stressed mycobacteria,” <i>Science</i>, vol. 339, no. 6115. American Association for the Advancement of Science, pp. 91–95, 2013.","short":"Y. Wakamoto, N. Dhar, R.P. Chait, K. Schneider, F. Signorino Gelo, S. Leibler, J. Mckinney, Science 339 (2013) 91–95.","ista":"Wakamoto Y, Dhar N, Chait RP, Schneider K, Signorino Gelo F, Leibler S, Mckinney J. 2013. Dynamic persistence of antibiotic-stressed mycobacteria. Science. 339(6115), 91–95.","ama":"Wakamoto Y, Dhar N, Chait RP, et al. Dynamic persistence of antibiotic-stressed mycobacteria. <i>Science</i>. 2013;339(6115):91-95. doi:<a href=\"https://doi.org/10.1126/science.1229858\">10.1126/science.1229858</a>","chicago":"Wakamoto, Yurichi, Neraaj Dhar, Remy P Chait, Katrin Schneider, François Signorino Gelo, Stanislas Leibler, and John Mckinney. “Dynamic Persistence of Antibiotic-Stressed Mycobacteria.” <i>Science</i>. American Association for the Advancement of Science, 2013. <a href=\"https://doi.org/10.1126/science.1229858\">https://doi.org/10.1126/science.1229858</a>.","apa":"Wakamoto, Y., Dhar, N., Chait, R. P., Schneider, K., Signorino Gelo, F., Leibler, S., &#38; Mckinney, J. (2013). Dynamic persistence of antibiotic-stressed mycobacteria. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1229858\">https://doi.org/10.1126/science.1229858</a>","mla":"Wakamoto, Yurichi, et al. “Dynamic Persistence of Antibiotic-Stressed Mycobacteria.” <i>Science</i>, vol. 339, no. 6115, American Association for the Advancement of Science, 2013, pp. 91–95, doi:<a href=\"https://doi.org/10.1126/science.1229858\">10.1126/science.1229858</a>."},"year":"2013","article_processing_charge":"No","publisher":"American Association for the Advancement of Science","intvolume":"       339","title":"Dynamic persistence of antibiotic-stressed mycobacteria","external_id":{"isi":["000312985800059"]},"day":"04"},{"citation":{"ieee":"M. Ward, S. Lycett, D. Avila, J. P. Bollback, and A. Leigh Brown, “Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza,” <i>BMC Evolutionary Biology</i>, vol. 13, no. 1. BioMed Central, 2013.","short":"M. Ward, S. Lycett, D. Avila, J.P. Bollback, A. Leigh Brown, BMC Evolutionary Biology 13 (2013).","ista":"Ward M, Lycett S, Avila D, Bollback JP, Leigh Brown A. 2013. Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza. BMC Evolutionary Biology. 13(1), 222.","ama":"Ward M, Lycett S, Avila D, Bollback JP, Leigh Brown A. Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza. <i>BMC Evolutionary Biology</i>. 2013;13(1). doi:<a href=\"https://doi.org/10.1186/1471-2148-13-222\">10.1186/1471-2148-13-222</a>","chicago":"Ward, Melissa, Samantha Lycett, Dorita Avila, Jonathan P Bollback, and Andrew Leigh Brown. “Evolutionary Interactions between Haemagglutinin and Neuraminidase in Avian Influenza.” <i>BMC Evolutionary Biology</i>. BioMed Central, 2013. <a href=\"https://doi.org/10.1186/1471-2148-13-222\">https://doi.org/10.1186/1471-2148-13-222</a>.","apa":"Ward, M., Lycett, S., Avila, D., Bollback, J. P., &#38; Leigh Brown, A. (2013). Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza. <i>BMC Evolutionary Biology</i>. BioMed Central. <a href=\"https://doi.org/10.1186/1471-2148-13-222\">https://doi.org/10.1186/1471-2148-13-222</a>","mla":"Ward, Melissa, et al. “Evolutionary Interactions between Haemagglutinin and Neuraminidase in Avian Influenza.” <i>BMC Evolutionary Biology</i>, vol. 13, no. 1, 222, BioMed Central, 2013, doi:<a href=\"https://doi.org/10.1186/1471-2148-13-222\">10.1186/1471-2148-13-222</a>."},"year":"2013","article_processing_charge":"No","publisher":"BioMed Central","file_date_updated":"2020-07-14T12:46:36Z","intvolume":"        13","title":"Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza","file":[{"relation":"main_file","content_type":"application/pdf","file_name":"IST-2018-941-v1+1_2013_Bollback_Evolutionary_interactionspdf.pdf","file_id":"4722","date_updated":"2020-07-14T12:46:36Z","file_size":1150052,"checksum":"52cf48a7c1794676ae8b0029573a84a9","creator":"system","access_level":"open_access","date_created":"2018-12-12T10:08:59Z"}],"external_id":{"isi":["000326620200001"]},"article_number":"222","day":"09","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"language":[{"iso":"eng"}],"date_published":"2013-10-09T00:00:00Z","abstract":[{"text":"Background: Reassortment between the RNA segments encoding haemagglutinin (HA) and neuraminidase (NA), the major antigenic influenza proteins, produces viruses with novel HA and NA subtype combinations and has preceded the emergence of pandemic strains. It has been suggested that productive viral infection requires a balance in the level of functional activity of HA and NA, arising from their closely interacting roles in the viral life cycle, and that this functional balance could be mediated by genetic changes in the HA and NA. Here, we investigate how the selective pressure varies for H7 avian influenza HA on different NA subtype backgrounds. Results: By extending Bayesian stochastic mutational mapping methods to calculate the ratio of the rate of non-synonymous change to the rate of synonymous change (d N/d S), we found the average d N/d S across the avian influenza H7 HA1 region to be significantly greater on an N2 NA subtype background than on an N1, N3 or N7 background. Observed differences in evolutionary rates of H7 HA on different NA subtype backgrounds could not be attributed to underlying differences between avian host species or virus pathogenicity. Examination of d N/d S values for each subtype on a site-by-site basis indicated that the elevated d N/d S on the N2 NA background was a result of increased selection, rather than a relaxation of selective constraint. Conclusions: Our results are consistent with the hypothesis that reassortment exposes influenza HA to significant changes in selective pressure through genetic interactions with NA. Such epistatic effects might be explicitly accounted for in future models of influenza evolution.","lang":"eng"}],"isi":1,"has_accepted_license":"1","type":"journal_article","oa":1,"issue":"1","volume":13,"date_updated":"2025-09-30T07:28:51Z","publist_id":"7320","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication":"BMC Evolutionary Biology","oa_version":"Published Version","pubrep_id":"941","status":"public","month":"10","doi":"10.1186/1471-2148-13-222","quality_controlled":"1","scopus_import":"1","department":[{"_id":"JoBo"}],"ddc":["576"],"_id":"500","author":[{"last_name":"Ward","first_name":"Melissa","full_name":"Ward, Melissa"},{"first_name":"Samantha","full_name":"Lycett, Samantha","last_name":"Lycett"},{"full_name":"Avila, Dorita","first_name":"Dorita","last_name":"Avila"},{"last_name":"Bollback","first_name":"Jonathan P","orcid":"0000-0002-4624-4612","full_name":"Bollback, Jonathan P","id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Andrew","full_name":"Leigh Brown, Andrew","last_name":"Leigh Brown"}],"date_created":"2018-12-11T11:46:49Z","acknowledgement":"This work was supported by the Biotechnology and Biological Sciences Research Council, the Government of the Republic of Panama, the Interdisciplinary Centre for Human and Avian Influenza Research (www.ichair-flu.org) funded by the Scottish Funding Council, and the Institute for Science and Technology Austria.\r\nCC BY 2.0\r\n","publication_status":"published"},{"language":[{"iso":"eng"}],"page":"1331 - 1345","date_published":"2013-12-01T00:00:00Z","isi":1,"abstract":[{"lang":"eng","text":"All known species of extant tapirs are allopatric: 1 in southeastern Asia and 3 in Central and South America. The fossil record for tapirs, however, is much wider in geographical range, including Europe, Asia, and North and South America, going back to the late Oligocene, making the present distribution a relict of the original one. We here describe a new species of living Tapirus from the Amazon rain forest, the 1st since T. bairdii Gill, 1865, and the 1st new Perissodactyla in more than 100 years, from both morphological and molecular characters. It is shorter in stature than T. terrestris (Linnaeus, 1758) and has distinctive skull morphology, and it is basal to the clade formed by T. terrestris and T. pinchaque (Roulin, 1829). This highlights the unrecognized biodiversity in western Amazonia, where the biota faces increasing threats. Local peoples have long recognized our new species, suggesting a key role for traditional knowledge in understanding the biodiversity of the region."}],"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","year":"2013","citation":{"ieee":"M. Cozzuol <i>et al.</i>, “A new species of tapir from the Amazon,” <i>Journal of Mammalogy</i>, vol. 94, no. 6. Oxford University Press, pp. 1331–1345, 2013.","short":"M. Cozzuol, C. Clozato, E. Holanda, F. Rodrigues, S. Nienow, B. De Thoisy, R.A. Fernandes Redondo, F. Santos, Journal of Mammalogy 94 (2013) 1331–1345.","apa":"Cozzuol, M., Clozato, C., Holanda, E., Rodrigues, F., Nienow, S., De Thoisy, B., … Santos, F. (2013). A new species of tapir from the Amazon. <i>Journal of Mammalogy</i>. Oxford University Press. <a href=\"https://doi.org/10.1644/12-MAMM-A-169.1\">https://doi.org/10.1644/12-MAMM-A-169.1</a>","mla":"Cozzuol, Mario, et al. “A New Species of Tapir from the Amazon.” <i>Journal of Mammalogy</i>, vol. 94, no. 6, Oxford University Press, 2013, pp. 1331–45, doi:<a href=\"https://doi.org/10.1644/12-MAMM-A-169.1\">10.1644/12-MAMM-A-169.1</a>.","ama":"Cozzuol M, Clozato C, Holanda E, et al. A new species of tapir from the Amazon. <i>Journal of Mammalogy</i>. 2013;94(6):1331-1345. doi:<a href=\"https://doi.org/10.1644/12-MAMM-A-169.1\">10.1644/12-MAMM-A-169.1</a>","ista":"Cozzuol M, Clozato C, Holanda E, Rodrigues F, Nienow S, De Thoisy B, Fernandes Redondo RA, Santos F. 2013. A new species of tapir from the Amazon. Journal of Mammalogy. 94(6), 1331–1345.","chicago":"Cozzuol, Mario, Camila Clozato, Elizete Holanda, Flávio Rodrigues, Samuel Nienow, Benoit De Thoisy, Rodrigo A Fernandes Redondo, and Fabrício Santos. “A New Species of Tapir from the Amazon.” <i>Journal of Mammalogy</i>. Oxford University Press, 2013. <a href=\"https://doi.org/10.1644/12-MAMM-A-169.1\">https://doi.org/10.1644/12-MAMM-A-169.1</a>."},"intvolume":"        94","file_date_updated":"2020-07-14T12:46:36Z","publisher":"Oxford University Press","article_processing_charge":"No","file":[{"relation":"main_file","content_type":"application/pdf","file_name":"IST-2018-940-v1+1_2013_Redondo_A_new.pdf","file_id":"4980","checksum":"8007815078dccac21ecd1cf73a269dc6","date_updated":"2020-07-14T12:46:36Z","file_size":1040765,"creator":"system","access_level":"open_access","date_created":"2018-12-12T10:12:59Z"}],"title":"A new species of tapir from the Amazon","tmp":{"image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"day":"01","external_id":{"isi":["000329010200015"]},"department":[{"_id":"JoBo"}],"scopus_import":"1","quality_controlled":"1","doi":"10.1644/12-MAMM-A-169.1","author":[{"first_name":"Mario","full_name":"Cozzuol, Mario","last_name":"Cozzuol"},{"last_name":"Clozato","full_name":"Clozato, Camila","first_name":"Camila"},{"full_name":"Holanda, Elizete","first_name":"Elizete","last_name":"Holanda"},{"last_name":"Rodrigues","first_name":"Flávio","full_name":"Rodrigues, Flávio"},{"full_name":"Nienow, Samuel","first_name":"Samuel","last_name":"Nienow"},{"last_name":"De Thoisy","first_name":"Benoit","full_name":"De Thoisy, Benoit"},{"last_name":"Fernandes Redondo","full_name":"Fernandes Redondo, Rodrigo A","orcid":"0000-0002-5837-2793","first_name":"Rodrigo A","id":"409D5C96-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Santos","full_name":"Santos, Fabrício","first_name":"Fabrício"}],"_id":"501","ddc":["570"],"date_created":"2018-12-11T11:46:49Z","publication_status":"published","issue":"6","oa":1,"has_accepted_license":"1","type":"journal_article","date_updated":"2025-09-30T07:28:20Z","volume":94,"oa_version":"Published Version","status":"public","pubrep_id":"940","publication":"Journal of Mammalogy","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publist_id":"7319","month":"12"},{"publication_status":"published","abstract":[{"text":"Blind signatures allow users to obtain signatures on messages hidden from the signer; moreover, the signer cannot link the resulting message/signature pair to the signing session. This paper presents blind signature schemes, in which the number of interactions between the user and the signer is minimal and whose blind signatures are short. Our schemes are defined over bilinear groups and are proved secure in the common-reference-string model without random oracles and under standard assumptions: CDH and the decision-linear assumption. (We also give variants over asymmetric groups based on similar assumptions.) The blind signatures are Waters signatures, which consist of 2 group elements. Moreover, we instantiate partially blind signatures, where the message consists of a part hidden from the signer and a commonly known public part, and schemes achieving perfect blindness. We propose new variants of blind signatures, such as signer-friendly partially blind signatures, where the public part can be chosen by the signer without prior agreement, 3-party blind signatures, as well as blind signatures on multiple aggregated messages provided by independent sources. We also extend Waters signatures to non-binary alphabets by proving a new result on the underlying hash function. ","lang":"eng"}],"date_created":"2018-12-11T11:46:50Z","author":[{"first_name":"Olivier","full_name":"Blazy, Olivier","last_name":"Blazy"},{"id":"46B4C3EE-F248-11E8-B48F-1D18A9856A87","first_name":"Georg","full_name":"Fuchsbauer, Georg","last_name":"Fuchsbauer"},{"first_name":"David","full_name":"Pointcheval, David","last_name":"Pointcheval"},{"full_name":"Vergnaud, Damien","first_name":"Damien","last_name":"Vergnaud"}],"page":"627 - 661","date_published":"2013-11-22T00:00:00Z","_id":"502","scopus_import":1,"department":[{"_id":"KrPi"}],"quality_controlled":"1","language":[{"iso":"eng"}],"doi":"10.3233/JCS-130477","day":"22","month":"11","oa_version":"None","status":"public","publist_id":"7318","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Journal of Computer Security","title":"Short blind signatures","intvolume":"        21","volume":21,"date_updated":"2021-01-12T08:01:09Z","publisher":"IOS Press","issue":"5","year":"2013","type":"journal_article","citation":{"mla":"Blazy, Olivier, et al. “Short Blind Signatures.” <i>Journal of Computer Security</i>, vol. 21, no. 5, IOS Press, 2013, pp. 627–61, doi:<a href=\"https://doi.org/10.3233/JCS-130477\">10.3233/JCS-130477</a>.","apa":"Blazy, O., Fuchsbauer, G., Pointcheval, D., &#38; Vergnaud, D. (2013). Short blind signatures. <i>Journal of Computer Security</i>. IOS Press. <a href=\"https://doi.org/10.3233/JCS-130477\">https://doi.org/10.3233/JCS-130477</a>","chicago":"Blazy, Olivier, Georg Fuchsbauer, David Pointcheval, and Damien Vergnaud. “Short Blind Signatures.” <i>Journal of Computer Security</i>. IOS Press, 2013. <a href=\"https://doi.org/10.3233/JCS-130477\">https://doi.org/10.3233/JCS-130477</a>.","ama":"Blazy O, Fuchsbauer G, Pointcheval D, Vergnaud D. Short blind signatures. <i>Journal of Computer Security</i>. 2013;21(5):627-661. doi:<a href=\"https://doi.org/10.3233/JCS-130477\">10.3233/JCS-130477</a>","ista":"Blazy O, Fuchsbauer G, Pointcheval D, Vergnaud D. 2013. Short blind signatures. Journal of Computer Security. 21(5), 627–661.","ieee":"O. Blazy, G. Fuchsbauer, D. Pointcheval, and D. Vergnaud, “Short blind signatures,” <i>Journal of Computer Security</i>, vol. 21, no. 5. IOS Press, pp. 627–661, 2013.","short":"O. Blazy, G. Fuchsbauer, D. Pointcheval, D. Vergnaud, Journal of Computer Security 21 (2013) 627–661."}}]