[{"acknowledgement":"Steven N. Evans was supported in part by NSF Grants DMS-04-05778 and DMS-09-07630. Bernd Sturmfels was supported in part by NSF Grants DMS-04-56960 and DMS-07-57236. Caroline Uhler was supported by an International Fulbright Science and Technology Fellowship.","quality_controlled":0,"abstract":[{"lang":"eng","text":"We use methods from combinatorics and algebraic statistics to study analogues of birth-and-death processes that have as their state space a finite subset of the m-dimensional lattice and for which the m matrices that record the transition probabilities in each of the lattice directions commute pairwise. One reason such processes are of interest is that the transition matrix is straightforward to diagonalize, and hence it is easy to compute n step transition probabilities. The set of commuting birth-and-death processes decomposes as a union of toric varieties, with the main component being the closure of all processes whose nearest neighbor transition probabilities are positive. We exhibit an explicit monomial parametrization for this main component, and we explore the boundary components using primary decomposition."}],"month":"01","type":"journal_article","oa":1,"volume":20,"title":"Commuting birth and death processes","main_file_link":[{"url":"http://arxiv.org/abs/0812.2724","open_access":"1"}],"date_created":"2018-12-11T12:02:35Z","doi":"10.1214/09-AAP615","day":"01","publication_status":"published","status":"public","intvolume":"        20","publication":"The Annals of Applied Probability","page":"238 - 266","citation":{"ista":"Evans S, Sturmfels B, Uhler C. 2010. Commuting birth and death processes. The Annals of Applied Probability. 20, 238–266.","chicago":"Evans, Steven, Bernd Sturmfels, and Caroline Uhler. “Commuting Birth and Death Processes.” <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics, 2010. <a href=\"https://doi.org/10.1214/09-AAP615\">https://doi.org/10.1214/09-AAP615</a>.","short":"S. Evans, B. Sturmfels, C. Uhler, The Annals of Applied Probability 20 (2010) 238–266.","apa":"Evans, S., Sturmfels, B., &#38; Uhler, C. (2010). Commuting birth and death processes. <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/09-AAP615\">https://doi.org/10.1214/09-AAP615</a>","ieee":"S. Evans, B. Sturmfels, and C. Uhler, “Commuting birth and death processes,” <i>The Annals of Applied Probability</i>, vol. 20. Institute of Mathematical Statistics, pp. 238–266, 2010.","ama":"Evans S, Sturmfels B, Uhler C. Commuting birth and death processes. <i>The Annals of Applied Probability</i>. 2010;20:238-266. doi:<a href=\"https://doi.org/10.1214/09-AAP615\">10.1214/09-AAP615</a>","mla":"Evans, Steven, et al. “Commuting Birth and Death Processes.” <i>The Annals of Applied Probability</i>, vol. 20, Institute of Mathematical Statistics, 2010, pp. 238–66, doi:<a href=\"https://doi.org/10.1214/09-AAP615\">10.1214/09-AAP615</a>."},"publist_id":"3334","publisher":"Institute of Mathematical Statistics","date_updated":"2021-01-12T07:42:32Z","date_published":"2010-01-01T00:00:00Z","extern":1,"_id":"3306","year":"2010","author":[{"full_name":"Evans, Steven N","last_name":"Evans","first_name":"Steven"},{"first_name":"Bernd","last_name":"Sturmfels","full_name":"Sturmfels, Bernd"},{"id":"49ADD78E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7008-0216","full_name":"Caroline Uhler","last_name":"Uhler","first_name":"Caroline"}]},{"publisher":"Springer","intvolume":"        62","publication":"Annals of the Institute of Statistical Mathematics","status":"public","publication_status":"published","citation":{"mla":"Sturmfels, Bernd, and Caroline Uhler. “Multivariate Gaussians, Semidefinite Matrix Completion, and Convex Algebraic Geometry.” <i>Annals of the Institute of Statistical Mathematics</i>, vol. 62, no. 4, Springer, 2010, pp. 603–38, doi:<a href=\"https://doi.org/10.1007/s10463-010-0295-4\">10.1007/s10463-010-0295-4</a>.","ieee":"B. Sturmfels and C. Uhler, “Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry,” <i>Annals of the Institute of Statistical Mathematics</i>, vol. 62, no. 4. Springer, pp. 603–638, 2010.","ama":"Sturmfels B, Uhler C. Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry. <i>Annals of the Institute of Statistical Mathematics</i>. 2010;62(4):603-638. doi:<a href=\"https://doi.org/10.1007/s10463-010-0295-4\">10.1007/s10463-010-0295-4</a>","apa":"Sturmfels, B., &#38; Uhler, C. (2010). Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry. <i>Annals of the Institute of Statistical Mathematics</i>. Springer. <a href=\"https://doi.org/10.1007/s10463-010-0295-4\">https://doi.org/10.1007/s10463-010-0295-4</a>","ista":"Sturmfels B, Uhler C. 2010. Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry. Annals of the Institute of Statistical Mathematics. 62(4), 603–638.","chicago":"Sturmfels, Bernd, and Caroline Uhler. “Multivariate Gaussians, Semidefinite Matrix Completion, and Convex Algebraic Geometry.” <i>Annals of the Institute of Statistical Mathematics</i>. Springer, 2010. <a href=\"https://doi.org/10.1007/s10463-010-0295-4\">https://doi.org/10.1007/s10463-010-0295-4</a>.","short":"B. Sturmfels, C. Uhler, Annals of the Institute of Statistical Mathematics 62 (2010) 603–638."},"page":"603 - 638","publist_id":"3332","_id":"3308","author":[{"full_name":"Sturmfels, Bernd","last_name":"Sturmfels","first_name":"Bernd"},{"last_name":"Uhler","first_name":"Caroline","full_name":"Caroline Uhler","id":"49ADD78E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7008-0216"}],"year":"2010","date_updated":"2021-01-12T07:42:33Z","extern":1,"date_published":"2010-08-01T00:00:00Z","type":"journal_article","month":"08","abstract":[{"text":"We study multivariate normal models that are described by linear constraints on the inverse of the covariance matrix. Maximum likelihood estimation for such models leads to the problem of maximizing the determinant function over a spectrahedron, and to the problem of characterizing the image of the positive definite cone under an arbitrary linear projection. These problems at the interface of statistics and optimization are here examined from the perspective of convex algebraic geometry.","lang":"eng"}],"quality_controlled":0,"oa":1,"acknowledgement":"B. Sturmfels is supported in part by NSF grants DMS-0456960 and DMS-0757236. C. Uhler is supported by an International Fulbright Science and Technology Fellowship.","day":"01","title":"Multivariate Gaussians, semidefinite matrix completion, and convex algebraic geometry","volume":62,"doi":"10.1007/s10463-010-0295-4","date_created":"2018-12-11T12:02:35Z","issue":"4","main_file_link":[{"url":"http://arxiv.org/abs/0906.3529","open_access":"1"}]},{"main_file_link":[{"url":"http://infoscience.epfl.ch/record/117513/files/PLDI_paper.pdf","open_access":"0"}],"issue":"3","doi":"10.1007/s00446-009-0092-6","date_created":"2018-12-11T12:03:08Z","volume":22,"title":"Model checking transactional memories","day":"01","pubrep_id":"74","acknowledgement":"This research was supported by the Swiss National Science Foundation. This paper is an extended and revised version of our previous work on model checking transactional memories.","abstract":[{"text":"Model checking transactional memories (TMs) is difficult because of the unbounded number, length, and delay of concurrent transactions, as well as the unbounded size of the memory. We show that, under certain conditions satisfied by most TMs we know of, the model checking problem can be reduced to a finite-state problem, and we illustrate the use of the method by proving the correctness of several TMs, including two-phase locking, DSTM, and TL2. The safety properties we consider include strict serializability and opacity; the liveness properties include obstruction freedom, livelock freedom, and wait freedom. Our main contribution lies in the structure of the proofs, which are largely automated and not restricted to the TMs mentioned above. In a first step we show that every TM that enjoys certain structural properties either violates a requirement on some program with two threads and two shared variables, or satisfies the requirement on all programs. In the second step, we use a model checker to prove the requirement for the TM applied to a most general program with two threads and two variables. In the safety case, the model checker checks language inclusion between two finite-state transition systems, a nondeterministic transition system representing the given TM applied to a most general program, and a deterministic transition system representing a most liberal safe TM applied to the same program. The given TM transition system is nondeterministic because a TM can be used with different contention managers, which resolve conflicts differently. In the liveness case, the model checker analyzes fairness conditions on the given TM transition system.","lang":"eng"}],"quality_controlled":0,"type":"journal_article","month":"03","date_published":"2010-03-01T00:00:00Z","extern":1,"date_updated":"2021-01-12T07:43:14Z","year":"2010","author":[{"last_name":"Guerraoui","first_name":"Rachid","full_name":"Guerraoui, Rachid"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000−0002−2985−7724","full_name":"Thomas Henzinger","last_name":"Henzinger","first_name":"Thomas A"},{"first_name":"Vasu","last_name":"Singh","full_name":"Vasu Singh","id":"4DAE2708-F248-11E8-B48F-1D18A9856A87"}],"_id":"3402","page":"129 - 145","publist_id":"3000","citation":{"chicago":"Guerraoui, Rachid, Thomas A Henzinger, and Vasu Singh. “Model Checking Transactional Memories.” <i>Distributed Computing</i>. Springer, 2010. <a href=\"https://doi.org/10.1007/s00446-009-0092-6\">https://doi.org/10.1007/s00446-009-0092-6</a>.","ista":"Guerraoui R, Henzinger TA, Singh V. 2010. Model checking transactional memories. Distributed Computing. 22(3), 129–145.","short":"R. Guerraoui, T.A. Henzinger, V. Singh, Distributed Computing 22 (2010) 129–145.","ama":"Guerraoui R, Henzinger TA, Singh V. Model checking transactional memories. <i>Distributed Computing</i>. 2010;22(3):129-145. doi:<a href=\"https://doi.org/10.1007/s00446-009-0092-6\">10.1007/s00446-009-0092-6</a>","ieee":"R. Guerraoui, T. A. Henzinger, and V. Singh, “Model checking transactional memories,” <i>Distributed Computing</i>, vol. 22, no. 3. Springer, pp. 129–145, 2010.","apa":"Guerraoui, R., Henzinger, T. A., &#38; Singh, V. (2010). Model checking transactional memories. <i>Distributed Computing</i>. Springer. <a href=\"https://doi.org/10.1007/s00446-009-0092-6\">https://doi.org/10.1007/s00446-009-0092-6</a>","mla":"Guerraoui, Rachid, et al. “Model Checking Transactional Memories.” <i>Distributed Computing</i>, vol. 22, no. 3, Springer, 2010, pp. 129–45, doi:<a href=\"https://doi.org/10.1007/s00446-009-0092-6\">10.1007/s00446-009-0092-6</a>."},"publication_status":"published","status":"public","publication":"Distributed Computing","intvolume":"        22","publisher":"Springer"},{"year":"2010","author":[{"first_name":"Barty","last_name":"Pleydell Bouverie","full_name":"Pleydell-Bouverie, Barty"},{"first_name":"Jozsef L","last_name":"Csicsvari","full_name":"Jozsef Csicsvari","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5193-4036"}],"_id":"3403","date_published":"2010-12-22T00:00:00Z","extern":1,"date_updated":"2019-05-10T12:19:51Z","publisher":"Elsevier","publist_id":"2999","citation":{"ista":"Pleydell Bouverie B, Csicsvari JL. 2010. Rate remapping: When the code goes beyond space (preview). Neuron. 68(6), 1015–1016.","chicago":"Pleydell Bouverie, Barty, and Jozsef L Csicsvari. “Rate Remapping: When the Code Goes beyond Space (Preview).” <i>Neuron</i>. Elsevier, 2010. <a href=\"https://doi.org/10.1016/j.neuron.2010.12.011\">https://doi.org/10.1016/j.neuron.2010.12.011</a>.","short":"B. Pleydell Bouverie, J.L. Csicsvari, Neuron 68 (2010) 1015–1016.","apa":"Pleydell Bouverie, B., &#38; Csicsvari, J. L. (2010). Rate remapping: When the code goes beyond space (preview). <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2010.12.011\">https://doi.org/10.1016/j.neuron.2010.12.011</a>","mla":"Pleydell Bouverie, Barty, and Jozsef L. Csicsvari. “Rate Remapping: When the Code Goes beyond Space (Preview).” <i>Neuron</i>, vol. 68, no. 6, Elsevier, 2010, pp. 1015–16, doi:<a href=\"https://doi.org/10.1016/j.neuron.2010.12.011\">10.1016/j.neuron.2010.12.011</a>.","ama":"Pleydell Bouverie B, Csicsvari JL. Rate remapping: When the code goes beyond space (preview). <i>Neuron</i>. 2010;68(6):1015-1016. doi:<a href=\"https://doi.org/10.1016/j.neuron.2010.12.011\">10.1016/j.neuron.2010.12.011</a>","ieee":"B. Pleydell Bouverie and J. L. Csicsvari, “Rate remapping: When the code goes beyond space (preview),” <i>Neuron</i>, vol. 68, no. 6. Elsevier, pp. 1015–1016, 2010."},"page":"1015 - 1016","publication_status":"published","publication":"Neuron","intvolume":"        68","status":"public","day":"22","issue":"6","doi":"10.1016/j.neuron.2010.12.011","date_created":"2018-12-11T12:03:08Z","volume":68,"title":"Rate remapping: When the code goes beyond space (preview)","quality_controlled":0,"abstract":[{"lang":"eng","text":"Rate remapping is a conjunctive code that potentially enables hippocampal place cells to jointly represent spatial and nonspatial information. In this issue of Neuron, Rennó-Costa et al. introduce a theoretical model wherein the convergence of the medial and lateral entorhinal excitatory inputs, combined with local inhibition, explains hippocampal rate remapping. © 2010 Elsevier Inc."}],"month":"12","type":"review"},{"page":"7759 - 7772","citation":{"mla":"Stawski, Philipp, et al. “Pharmacology of Ionotropic Glutamate Receptors: A Structural Perspective.” <i>Bioorganic and Medicinal Chemistry</i>, vol. 18, no. 22, Elsevier, 2010, pp. 7759–72, doi:<a href=\"https://doi.org/10.1016/j.bmc.2010.09.012\">10.1016/j.bmc.2010.09.012</a>.","ieee":"P. Stawski, H. L. Janovjak, and D. Trauner, “Pharmacology of ionotropic glutamate receptors: a structural perspective,” <i>Bioorganic and Medicinal Chemistry</i>, vol. 18, no. 22. Elsevier, pp. 7759–7772, 2010.","apa":"Stawski, P., Janovjak, H. L., &#38; Trauner, D. (2010). Pharmacology of ionotropic glutamate receptors: a structural perspective. <i>Bioorganic and Medicinal Chemistry</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.bmc.2010.09.012\">https://doi.org/10.1016/j.bmc.2010.09.012</a>","ama":"Stawski P, Janovjak HL, Trauner D. Pharmacology of ionotropic glutamate receptors: a structural perspective. <i>Bioorganic and Medicinal Chemistry</i>. 2010;18(22):7759-7772. doi:<a href=\"https://doi.org/10.1016/j.bmc.2010.09.012\">10.1016/j.bmc.2010.09.012</a>","chicago":"Stawski, Philipp, Harald L Janovjak, and Dirk Trauner. “Pharmacology of Ionotropic Glutamate Receptors: A Structural Perspective.” <i>Bioorganic and Medicinal Chemistry</i>. Elsevier, 2010. <a href=\"https://doi.org/10.1016/j.bmc.2010.09.012\">https://doi.org/10.1016/j.bmc.2010.09.012</a>.","short":"P. Stawski, H.L. Janovjak, D. Trauner, Bioorganic and Medicinal Chemistry 18 (2010) 7759–7772.","ista":"Stawski P, Janovjak HL, Trauner D. 2010. Pharmacology of ionotropic glutamate receptors: a structural perspective. Bioorganic and Medicinal Chemistry. 18(22), 7759–7772."},"publist_id":"2996","status":"public","intvolume":"        18","publication":"Bioorganic and Medicinal Chemistry","publication_status":"published","publisher":"Elsevier","extern":1,"date_published":"2010-11-15T00:00:00Z","date_updated":"2019-04-26T07:22:27Z","author":[{"full_name":"Stawski, Philipp","last_name":"Stawski","first_name":"Philipp"},{"id":"33BA6C30-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8023-9315","full_name":"Harald Janovjak","first_name":"Harald L","last_name":"Janovjak"},{"full_name":"Trauner, Dirk","first_name":"Dirk","last_name":"Trauner"}],"year":"2010","_id":"3406","type":"review","month":"11","abstract":[{"text":"The impact of structural biology on the design of ligands (agonists, antagonists and modulators) for ionotropic glutamate receptors is reviewed.","lang":"eng"}],"quality_controlled":0,"issue":"22","date_created":"2018-12-11T12:03:10Z","doi":"10.1016/j.bmc.2010.09.012","title":"Pharmacology of ionotropic glutamate receptors: a structural perspective","volume":18,"day":"15"},{"publisher":"Nature Publishing Group","status":"public","intvolume":"        13","publication":"Nature Neuroscience","publication_status":"published","publist_id":"2995","page":"1027 - 1032","citation":{"chicago":"Janovjak, Harald L, Stephanie Szobota, Claire Wyart, Dirk Trauner, and Ehud Isacoff. “A Light-Gated, Potassium-Selective Glutamate Receptor for the Optical Inhibition of Neuronal Firing.” <i>Nature Neuroscience</i>. Nature Publishing Group, 2010. <a href=\"https://doi.org/10.1038/nn.2589\">https://doi.org/10.1038/nn.2589</a>.","short":"H.L. Janovjak, S. Szobota, C. Wyart, D. Trauner, E. Isacoff, Nature Neuroscience 13 (2010) 1027–1032.","ista":"Janovjak HL, Szobota S, Wyart C, Trauner D, Isacoff E. 2010. A light-gated, potassium-selective glutamate receptor for the optical inhibition of neuronal firing. Nature Neuroscience. 13, 1027–1032.","ieee":"H. L. Janovjak, S. Szobota, C. Wyart, D. Trauner, and E. Isacoff, “A light-gated, potassium-selective glutamate receptor for the optical inhibition of neuronal firing,” <i>Nature Neuroscience</i>, vol. 13. Nature Publishing Group, pp. 1027–1032, 2010.","mla":"Janovjak, Harald L., et al. “A Light-Gated, Potassium-Selective Glutamate Receptor for the Optical Inhibition of Neuronal Firing.” <i>Nature Neuroscience</i>, vol. 13, Nature Publishing Group, 2010, pp. 1027–32, doi:<a href=\"https://doi.org/10.1038/nn.2589\">10.1038/nn.2589</a>.","ama":"Janovjak HL, Szobota S, Wyart C, Trauner D, Isacoff E. A light-gated, potassium-selective glutamate receptor for the optical inhibition of neuronal firing. <i>Nature Neuroscience</i>. 2010;13:1027-1032. doi:<a href=\"https://doi.org/10.1038/nn.2589\">10.1038/nn.2589</a>","apa":"Janovjak, H. L., Szobota, S., Wyart, C., Trauner, D., &#38; Isacoff, E. (2010). A light-gated, potassium-selective glutamate receptor for the optical inhibition of neuronal firing. <i>Nature Neuroscience</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nn.2589\">https://doi.org/10.1038/nn.2589</a>"},"_id":"3407","author":[{"full_name":"Harald Janovjak","first_name":"Harald L","last_name":"Janovjak","orcid":"0000-0002-8023-9315","id":"33BA6C30-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Stephanie","last_name":"Szobota","full_name":"Szobota, Stephanie"},{"first_name":"Claire","last_name":"Wyart","full_name":"Wyart, Claire"},{"first_name":"Dirk","last_name":"Trauner","full_name":"Trauner, Dirk"},{"first_name":"Ehud","last_name":"Isacoff","full_name":"Isacoff, Ehud Y"}],"year":"2010","date_updated":"2021-01-12T07:43:16Z","extern":1,"date_published":"2010-06-27T00:00:00Z","type":"journal_article","month":"06","quality_controlled":0,"abstract":[{"lang":"eng","text":"Genetically targeted light-activated ion channels and pumps make it possible to determine the role of specific neurons in neuronal circuits, information processing and behavior. We developed a K+-selective ionotropic glutamate receptor that reversibly inhibits neuronal activity in response to light in dissociated neurons and brain slice and also reversibly suppresses behavior in zebrafish. The receptor is a chimera of the pore region of a K+-selective bacterial glutamate receptor and the ligand-binding domain of a light-gated mammalian kainate receptor. This hyperpolarizing light-gated channel, HyLighter, is turned on by a brief light pulse at one wavelength and turned off by a pulse at a second wavelength. The control is obtained at moderate intensity. After optical activation, the photocurrent and optical silencing of activity persists in the dark for extended periods. The low light requirement and bi-stability of HyLighter represent advantages for the dissection of neural circuitry."}],"day":"27","title":"A light-gated, potassium-selective glutamate receptor for the optical inhibition of neuronal firing","volume":13,"date_created":"2018-12-11T12:03:10Z","doi":"10.1038/nn.2589"},{"volume":82,"issue":"12","day":"15","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","quality_controlled":"1","oa":1,"date_updated":"2024-10-14T12:21:48Z","extern":"1","author":[{"full_name":"Klajn, Rafal","last_name":"Klajn","first_name":"Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"}],"year":"2010","publication":"Pure and Applied Chemistry","status":"public","page":"2247-2279","citation":{"ista":"Klajn R. 2010. Immobilized azobenzenes for the construction of photoresponsive materials. Pure and Applied Chemistry. 82(12), 2247–2279.","short":"R. Klajn, Pure and Applied Chemistry 82 (2010) 2247–2279.","chicago":"Klajn, Rafal. “Immobilized Azobenzenes for the Construction of Photoresponsive Materials.” <i>Pure and Applied Chemistry</i>. De Gruyter, 2010. <a href=\"https://doi.org/10.1351/pac-con-10-09-04\">https://doi.org/10.1351/pac-con-10-09-04</a>.","mla":"Klajn, Rafal. “Immobilized Azobenzenes for the Construction of Photoresponsive Materials.” <i>Pure and Applied Chemistry</i>, vol. 82, no. 12, De Gruyter, 2010, pp. 2247–79, doi:<a href=\"https://doi.org/10.1351/pac-con-10-09-04\">10.1351/pac-con-10-09-04</a>.","ieee":"R. Klajn, “Immobilized azobenzenes for the construction of photoresponsive materials,” <i>Pure and Applied Chemistry</i>, vol. 82, no. 12. De Gruyter, pp. 2247–2279, 2010.","apa":"Klajn, R. (2010). Immobilized azobenzenes for the construction of photoresponsive materials. <i>Pure and Applied Chemistry</i>. De Gruyter. <a href=\"https://doi.org/10.1351/pac-con-10-09-04\">https://doi.org/10.1351/pac-con-10-09-04</a>","ama":"Klajn R. Immobilized azobenzenes for the construction of photoresponsive materials. <i>Pure and Applied Chemistry</i>. 2010;82(12):2247-2279. doi:<a href=\"https://doi.org/10.1351/pac-con-10-09-04\">10.1351/pac-con-10-09-04</a>"},"publisher":"De Gruyter","scopus_import":"1","title":"Immobilized azobenzenes for the construction of photoresponsive materials","date_created":"2023-08-01T09:48:11Z","oa_version":"Published Version","doi":"10.1351/pac-con-10-09-04","article_processing_charge":"No","main_file_link":[{"url":"https://doi.org/10.1351/pac-con-10-09-04","open_access":"1"}],"publication_identifier":{"issn":["0033-4545"],"eissn":["1365-3075"]},"month":"10","type":"journal_article","abstract":[{"text":"The immobilization of molecular switches onto inorganic supports has recently become a hot topic as it can give rise to novel hybrid materials in which the properties of the two components are mutually enhanced. Even more attractive is the concept of “transferring” the switchable characteristics of single layers of organic molecules onto the underlying inorganic components, rendering them responsive to external stimuli as well. Of the various molecular switches studied, azobenzene (AB) has arguably attracted most attention due to its simple molecular structure, and because its “trigger” (light) is a noninvasive one, it can be delivered instantaneously, and into a precise location. In order to fully realize its potential, however, it is necessary to immobilize AB onto solid supports. It is the goal of this manuscript to comprehensively yet concisely review such hybrid systems which comprise AB forming well-defined self-assembled monolayers (SAMs) on planar and curved (colloidal and nanoporous) inorganic surfaces. I discuss methods to immobilize AB derivatives onto surfaces, strategies to ensure efficient AB isomerization, ways to monitor the switching process, properties of these switchable hybrid materials, and, last but not least, their emerging applications.","lang":"eng"}],"date_published":"2010-10-15T00:00:00Z","_id":"13409","keyword":["General Chemical Engineering","General Chemistry"],"intvolume":"        82","publication_status":"published","language":[{"iso":"eng"}]},{"author":[{"first_name":"Ali","last_name":"Coskun","full_name":"Coskun, Ali"},{"last_name":"Wesson","first_name":"Paul J.","full_name":"Wesson, Paul J."},{"first_name":"Rafal","last_name":"Klajn","full_name":"Klajn, Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"},{"last_name":"Trabolsi","first_name":"Ali","full_name":"Trabolsi, Ali"},{"full_name":"Fang, Lei","last_name":"Fang","first_name":"Lei"},{"first_name":"Mark A.","last_name":"Olson","full_name":"Olson, Mark A."},{"full_name":"Dey, Sanjeev K.","last_name":"Dey","first_name":"Sanjeev K."},{"full_name":"Grzybowski, Bartosz A.","first_name":"Bartosz A.","last_name":"Grzybowski"},{"full_name":"Stoddart, J. Fraser","first_name":"J. Fraser","last_name":"Stoddart"}],"year":"2010","extern":"1","date_updated":"2023-08-08T08:00:31Z","publisher":"American Chemical Society","scopus_import":"1","page":"4310-4320","citation":{"ista":"Coskun A, Wesson PJ, Klajn R, Trabolsi A, Fang L, Olson MA, Dey SK, Grzybowski BA, Stoddart JF. 2010. Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory. Journal of the American Chemical Society. 132(12), 4310–4320.","chicago":"Coskun, Ali, Paul J. Wesson, Rafal Klajn, Ali Trabolsi, Lei Fang, Mark A. Olson, Sanjeev K. Dey, Bartosz A. Grzybowski, and J. Fraser Stoddart. “Molecular-Mechanical Switching at the Nanoparticle−solvent Interface: Practice and Theory.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2010. <a href=\"https://doi.org/10.1021/ja9102327\">https://doi.org/10.1021/ja9102327</a>.","short":"A. Coskun, P.J. Wesson, R. Klajn, A. Trabolsi, L. Fang, M.A. Olson, S.K. Dey, B.A. Grzybowski, J.F. Stoddart, Journal of the American Chemical Society 132 (2010) 4310–4320.","ieee":"A. Coskun <i>et al.</i>, “Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory,” <i>Journal of the American Chemical Society</i>, vol. 132, no. 12. American Chemical Society, pp. 4310–4320, 2010.","ama":"Coskun A, Wesson PJ, Klajn R, et al. Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory. <i>Journal of the American Chemical Society</i>. 2010;132(12):4310-4320. doi:<a href=\"https://doi.org/10.1021/ja9102327\">10.1021/ja9102327</a>","apa":"Coskun, A., Wesson, P. J., Klajn, R., Trabolsi, A., Fang, L., Olson, M. A., … Stoddart, J. F. (2010). Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja9102327\">https://doi.org/10.1021/ja9102327</a>","mla":"Coskun, Ali, et al. “Molecular-Mechanical Switching at the Nanoparticle−solvent Interface: Practice and Theory.” <i>Journal of the American Chemical Society</i>, vol. 132, no. 12, American Chemical Society, 2010, pp. 4310–20, doi:<a href=\"https://doi.org/10.1021/ja9102327\">10.1021/ja9102327</a>."},"publication":"Journal of the American Chemical Society","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"31","issue":"12","volume":132,"article_type":"original","quality_controlled":"1","keyword":["Colloid and Surface Chemistry","Biochemistry","General Chemistry","Catalysis"],"_id":"13410","date_published":"2010-03-31T00:00:00Z","language":[{"iso":"eng"}],"pmid":1,"intvolume":"       132","publication_status":"published","oa_version":"None","doi":"10.1021/ja9102327","date_created":"2023-08-01T09:48:27Z","article_processing_charge":"No","title":"Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory","external_id":{"pmid":["20218598"]},"type":"journal_article","month":"03","abstract":[{"text":"A range (Au, Pt, Pd) of metal nanoparticles (MNPs) has been prepared and functionalized with (a) redox-active stalks containing tetrathiafulvalene (TTF) units, (b) [2]pseudorotaxanes formed between these stalks and cyclobis(paraquat-p-phenylene) (CBPQT4+) rings, and (c) bistable [2]rotaxane molecules where the dumbbell component contains a 1,5-dioxynaphthalene (DNP) unit, as well as a TTF unit, encircled by a CBPQT4+ ring. It transpires that the molecules present in (a) and (c) and the supermolecules described in (b) retain their switching characteristics, previously observed in solution, when they are immobilized onto MNPs. Moreover, their oxidation potentials depend on the fraction, χ, of the molecules or supermolecules on the surface of the nanoparticles. A variation in χ affects the oxidation potentials of the TTF units to the extent that switching can be subjected to fine tuning as a result. Specifically, increasing χ results in positive shifts (i) in the oxidation potentials of the TTF unit in (a)−(c) and (ii) the reduction potentials of the CBPQT4+ rings in (c). These shifts can be attributed to an increase in the electrostatic potential surrounding the MNPs. Both the magnitude and the direction of these shifts are reproduced by a model, based on the Poisson−Boltzmann equation coupled with charge-regulating boundary conditions. Furthermore, the kinetics of relaxation from the metastable state coconformation (MSCC) to the ground-state coconformation (GSCC) of the bistable [2]rotaxane molecules also depends on χ, as well as on the nanoparticle diameter. Increasing either of these parameters accelerates the rate of relaxation from the MSCC to the GSCC. This rate is a function of (i) the activation energy for the relaxation process associated with the bistable [2]rotaxane molecules in solution and (ii) the electrostatic potential surrounding the MNPs. The electrostatic potential depends on (i) the diameter of the MNPs, (ii) the amount of the bistable [2]rotaxane molecules on the surface of the MNPs, and (iii) the equilibrium distribution of the CBPQT4+ rings between the DNP and TTF recognition sites in the GSCC. This electrostatic potential has also been quantified using the Poisson−Boltzmann equation, leading to faithful estimates of the rate constants.","lang":"eng"}],"publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]}},{"date_updated":"2023-08-08T08:15:25Z","extern":"1","year":"2010","author":[{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","last_name":"Klajn","first_name":"Rafal","full_name":"Klajn, Rafal"},{"first_name":"Kevin P.","last_name":"Browne","full_name":"Browne, Kevin P."},{"full_name":"Soh, Siowling","first_name":"Siowling","last_name":"Soh"},{"last_name":"Grzybowski","first_name":"Bartosz A.","full_name":"Grzybowski, Bartosz A."}],"status":"public","publication":"Small","page":"1385-1387","citation":{"mla":"Klajn, Rafal, et al. “Nanoparticles That ‘Remember’ Temperature.” <i>Small</i>, vol. 6, no. 13, Wiley, 2010, pp. 1385–87, doi:<a href=\"https://doi.org/10.1002/smll.200902272\">10.1002/smll.200902272</a>.","apa":"Klajn, R., Browne, K. P., Soh, S., &#38; Grzybowski, B. A. (2010). Nanoparticles that “remember” temperature. <i>Small</i>. Wiley. <a href=\"https://doi.org/10.1002/smll.200902272\">https://doi.org/10.1002/smll.200902272</a>","ama":"Klajn R, Browne KP, Soh S, Grzybowski BA. Nanoparticles that “remember” temperature. <i>Small</i>. 2010;6(13):1385-1387. doi:<a href=\"https://doi.org/10.1002/smll.200902272\">10.1002/smll.200902272</a>","ieee":"R. Klajn, K. P. Browne, S. Soh, and B. A. Grzybowski, “Nanoparticles that ‘remember’ temperature,” <i>Small</i>, vol. 6, no. 13. Wiley, pp. 1385–1387, 2010.","chicago":"Klajn, Rafal, Kevin P. Browne, Siowling Soh, and Bartosz A. Grzybowski. “Nanoparticles That ‘Remember’ Temperature.” <i>Small</i>. Wiley, 2010. <a href=\"https://doi.org/10.1002/smll.200902272\">https://doi.org/10.1002/smll.200902272</a>.","short":"R. Klajn, K.P. Browne, S. Soh, B.A. Grzybowski, Small 6 (2010) 1385–1387.","ista":"Klajn R, Browne KP, Soh S, Grzybowski BA. 2010. Nanoparticles that “remember” temperature. Small. 6(13), 1385–1387."},"scopus_import":"1","publisher":"Wiley","volume":6,"issue":"13","day":"05","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","article_type":"original","date_published":"2010-07-05T00:00:00Z","_id":"13411","keyword":["Biomaterials","Biotechnology","General Materials Science","General Chemistry"],"publication_status":"published","intvolume":"         6","pmid":1,"language":[{"iso":"eng"}],"title":"Nanoparticles that “remember” temperature","article_processing_charge":"No","doi":"10.1002/smll.200902272","date_created":"2023-08-01T09:48:38Z","oa_version":"None","publication_identifier":{"eissn":["1613-6829"],"issn":["1613-6810"]},"abstract":[{"text":"Photoresponsive gold nanoparticles dispersed in a solid/frozen matrix provide a basis for sensors that “remember” whether the sample has ever exceeded the melting temperature of the matrix. The operation of these sensors rests on the ability to photoinduce metastable electric dipoles on NP surfaces – upon melting, these dipoles drive NP aggregation, precipitation, and crosslinking. These events are manifested by a pronounced color change.","lang":"eng"}],"month":"07","type":"journal_article","external_id":{"pmid":["20521264"]}},{"publication_status":"published","intvolume":"        39","pmid":1,"language":[{"iso":"eng"}],"date_published":"2010-04-21T00:00:00Z","_id":"13412","keyword":["General Chemistry"],"publication_identifier":{"issn":["0306-0012"],"eissn":["1460-4744"]},"abstract":[{"text":"Nanoparticles (NPs) and molecular/supramolecular switches have attracted considerable interest during the past decade on account of their unique properties and prominent roles in the fields of organic chemistry and materials science. Materials derived from the combination of these two components are now emerging in the literature. This critical review evaluates materials which comprise NPs functionalised with well-defined self-assembled monolayers of molecular and supramolecular switches. We draw attention to the fact that immobilisation of switches on NPs does not, in general, hamper their switching ability, although it can impart new properties on the supporting particles. This premise leads us to the discussion of systems in which switching on the surfaces of NPs can be used to modulate reversibly a range of NP properties—optical, fluorescent, electrical, magnetic—as well as the controlled release of small molecules. Finally, we discuss examples in which molecular switches direct reversible self-assembly of NPs (308 references).","lang":"eng"}],"month":"04","type":"journal_article","external_id":{"pmid":["20407689"]},"title":"Nanoparticles functionalised with reversible molecular and supramolecular switches","article_processing_charge":"No","doi":"10.1039/b920377j","oa_version":"None","date_created":"2023-08-01T09:49:07Z","publication":"Chemical Society Reviews","status":"public","citation":{"mla":"Klajn, Rafal, et al. “Nanoparticles Functionalised with Reversible Molecular and Supramolecular Switches.” <i>Chemical Society Reviews</i>, vol. 39, no. 6, Royal Society of Chemistry, 2010, pp. 2203–37, doi:<a href=\"https://doi.org/10.1039/b920377j\">10.1039/b920377j</a>.","ama":"Klajn R, Stoddart JF, Grzybowski BA. Nanoparticles functionalised with reversible molecular and supramolecular switches. <i>Chemical Society Reviews</i>. 2010;39(6):2203-2237. doi:<a href=\"https://doi.org/10.1039/b920377j\">10.1039/b920377j</a>","apa":"Klajn, R., Stoddart, J. F., &#38; Grzybowski, B. A. (2010). Nanoparticles functionalised with reversible molecular and supramolecular switches. <i>Chemical Society Reviews</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/b920377j\">https://doi.org/10.1039/b920377j</a>","ieee":"R. Klajn, J. F. Stoddart, and B. A. Grzybowski, “Nanoparticles functionalised with reversible molecular and supramolecular switches,” <i>Chemical Society Reviews</i>, vol. 39, no. 6. Royal Society of Chemistry, pp. 2203–2237, 2010.","chicago":"Klajn, Rafal, J. Fraser Stoddart, and Bartosz A. Grzybowski. “Nanoparticles Functionalised with Reversible Molecular and Supramolecular Switches.” <i>Chemical Society Reviews</i>. Royal Society of Chemistry, 2010. <a href=\"https://doi.org/10.1039/b920377j\">https://doi.org/10.1039/b920377j</a>.","short":"R. Klajn, J.F. Stoddart, B.A. Grzybowski, Chemical Society Reviews 39 (2010) 2203–2237.","ista":"Klajn R, Stoddart JF, Grzybowski BA. 2010. Nanoparticles functionalised with reversible molecular and supramolecular switches. Chemical Society Reviews. 39(6), 2203–2237."},"page":"2203-2237","scopus_import":"1","publisher":"Royal Society of Chemistry","date_updated":"2023-08-08T08:19:00Z","extern":"1","year":"2010","author":[{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal","last_name":"Klajn","first_name":"Rafal"},{"full_name":"Stoddart, J. Fraser","first_name":"J. Fraser","last_name":"Stoddart"},{"first_name":"Bartosz A.","last_name":"Grzybowski","full_name":"Grzybowski, Bartosz A."}],"quality_controlled":"1","article_type":"original","volume":39,"issue":"6","day":"21","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"acknowledgement":"This work has been supported by a Royal Society University Research Fellowship, NSF grants DMS-0305505 and DMS-0604775 and an Alfred Sloan Fellowship 2005-2007.","type":"journal_article","month":"07","quality_controlled":0,"abstract":[{"lang":"eng","text":"We prove a generating function formula for the Betti numbers of Nakajima quiver varieties. We prove that it is a q-deformation of the Weyl-Kac character formula. In particular this implies that the constant term of the polynomial counting the number of absolutely indecomposable representations of a quiver equals the multiplicity of a certain weight in the corresponding Kac-Moody algebra, which was conjectured by Kac in 1982."}],"oa":1,"title":"Kac's conjecture from Nakajima quiver varieties","volume":181,"issue":"1","date_created":"2018-12-11T11:52:11Z","doi":"10.1007/s00222-010-0241-3","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/0811.1569"}],"day":"01","status":"public","intvolume":"       181","publication":"Inventiones Mathematicae","publication_status":"published","page":"21 - 37","publist_id":"5730","citation":{"mla":"Hausel, Tamás. “Kac’s Conjecture from Nakajima Quiver Varieties.” <i>Inventiones Mathematicae</i>, vol. 181, no. 1, Springer, 2010, pp. 21–37, doi:<a href=\"https://doi.org/10.1007/s00222-010-0241-3\">10.1007/s00222-010-0241-3</a>.","ama":"Hausel T. Kac’s conjecture from Nakajima quiver varieties. <i>Inventiones Mathematicae</i>. 2010;181(1):21-37. doi:<a href=\"https://doi.org/10.1007/s00222-010-0241-3\">10.1007/s00222-010-0241-3</a>","apa":"Hausel, T. (2010). Kac’s conjecture from Nakajima quiver varieties. <i>Inventiones Mathematicae</i>. Springer. <a href=\"https://doi.org/10.1007/s00222-010-0241-3\">https://doi.org/10.1007/s00222-010-0241-3</a>","ieee":"T. Hausel, “Kac’s conjecture from Nakajima quiver varieties,” <i>Inventiones Mathematicae</i>, vol. 181, no. 1. Springer, pp. 21–37, 2010.","chicago":"Hausel, Tamás. “Kac’s Conjecture from Nakajima Quiver Varieties.” <i>Inventiones Mathematicae</i>. Springer, 2010. <a href=\"https://doi.org/10.1007/s00222-010-0241-3\">https://doi.org/10.1007/s00222-010-0241-3</a>.","ista":"Hausel T. 2010. Kac’s conjecture from Nakajima quiver varieties. Inventiones Mathematicae. 181(1), 21–37.","short":"T. Hausel, Inventiones Mathematicae 181 (2010) 21–37."},"publisher":"Springer","date_updated":"2021-01-12T06:50:56Z","extern":1,"date_published":"2010-07-01T00:00:00Z","_id":"1465","author":[{"id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","last_name":"Hausel","first_name":"Tamas","full_name":"Tamas Hausel"}],"year":"2010"},{"abstract":[{"lang":"eng","text":"In Hausel et al. (2008) [10] we presented a conjecture generalizing the Cauchy formula for Macdonald polynomial. This conjecture encodes the mixed Hodge polynomials of the character varieties of representations of the fundamental group of a punctured Riemann surface of genus g. We proved several results which support this conjecture. Here we announce new results which are consequences of those in Hausel et al. (2008) [10]."}],"quality_controlled":0,"month":"02","type":"journal_article","oa":1,"day":"01","volume":348,"title":"Topology of character varieties and representations of quivers","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/0905.3491"}],"date_created":"2018-12-11T11:52:11Z","doi":"10.1016/j.crma.2010.01.025","issue":"3-4","publisher":"Elsevier","publication_status":"published","publication":"Comptes Rendus Mathematique","intvolume":"       348","status":"public","publist_id":"5731","page":"131 - 135","citation":{"ista":"Hausel T, Letellier E, Rodríguez Villegas F. 2010. Topology of character varieties and representations of quivers. Comptes Rendus Mathematique. 348(3–4), 131–135.","chicago":"Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Topology of Character Varieties and Representations of Quivers.” <i>Comptes Rendus Mathematique</i>. Elsevier, 2010. <a href=\"https://doi.org/10.1016/j.crma.2010.01.025\">https://doi.org/10.1016/j.crma.2010.01.025</a>.","short":"T. Hausel, E. Letellier, F. Rodríguez Villegas, Comptes Rendus Mathematique 348 (2010) 131–135.","apa":"Hausel, T., Letellier, E., &#38; Rodríguez Villegas, F. (2010). Topology of character varieties and representations of quivers. <i>Comptes Rendus Mathematique</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.crma.2010.01.025\">https://doi.org/10.1016/j.crma.2010.01.025</a>","ieee":"T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Topology of character varieties and representations of quivers,” <i>Comptes Rendus Mathematique</i>, vol. 348, no. 3–4. Elsevier, pp. 131–135, 2010.","mla":"Hausel, Tamás, et al. “Topology of Character Varieties and Representations of Quivers.” <i>Comptes Rendus Mathematique</i>, vol. 348, no. 3–4, Elsevier, 2010, pp. 131–35, doi:<a href=\"https://doi.org/10.1016/j.crma.2010.01.025\">10.1016/j.crma.2010.01.025</a>.","ama":"Hausel T, Letellier E, Rodríguez Villegas F. Topology of character varieties and representations of quivers. <i>Comptes Rendus Mathematique</i>. 2010;348(3-4):131-135. doi:<a href=\"https://doi.org/10.1016/j.crma.2010.01.025\">10.1016/j.crma.2010.01.025</a>"},"_id":"1466","year":"2010","author":[{"full_name":"Tamas Hausel","last_name":"Hausel","first_name":"Tamas","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Emmanuel","last_name":"Letellier","full_name":"Letellier, Emmanuel"},{"last_name":"Rodríguez Villegas","first_name":"Fernando","full_name":"Rodríguez Villegas, Fernando"}],"date_updated":"2021-01-12T06:50:56Z","date_published":"2010-02-01T00:00:00Z","extern":1},{"day":"01","title":"S-Duality in HyperkäHler Hodge Theory","date_created":"2018-12-11T11:52:12Z","doi":"10.1093/acprof:oso/9780199534920.003.0016","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/0709.0504"}],"month":"09","type":"book_chapter","quality_controlled":0,"abstract":[{"lang":"eng","text":"This chapter surveys the motivations, related results, and progress made towards the following problem, raised by Hitchin in 1995: What is the space of L2 harmonic forms on the moduli space of Higgs bundles on a Riemann surface?"}],"oa":1,"_id":"1468","author":[{"id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","full_name":"Tamas Hausel","last_name":"Hausel","first_name":"Tamas"}],"year":"2010","date_updated":"2021-01-12T06:50:57Z","extern":1,"date_published":"2010-09-01T00:00:00Z","publisher":"Oxford University Press","status":"public","publication":"The Many Facets of Geometry: A Tribute to Nigel Hitchin","publication_status":"published","publist_id":"5729","citation":{"chicago":"Hausel, Tamás. “S-Duality in HyperkäHler Hodge Theory.” In <i>The Many Facets of Geometry: A Tribute to Nigel Hitchin</i>. Oxford University Press, 2010. <a href=\"https://doi.org/10.1093/acprof:oso/9780199534920.003.0016\">https://doi.org/10.1093/acprof:oso/9780199534920.003.0016</a>.","short":"T. Hausel, in:, The Many Facets of Geometry: A Tribute to Nigel Hitchin, Oxford University Press, 2010.","ista":"Hausel T. 2010.S-Duality in HyperkäHler Hodge Theory. In: The Many Facets of Geometry: A Tribute to Nigel Hitchin. .","ieee":"T. Hausel, “S-Duality in HyperkäHler Hodge Theory,” in <i>The Many Facets of Geometry: A Tribute to Nigel Hitchin</i>, Oxford University Press, 2010.","ama":"Hausel T. S-Duality in HyperkäHler Hodge Theory. In: <i>The Many Facets of Geometry: A Tribute to Nigel Hitchin</i>. Oxford University Press; 2010. doi:<a href=\"https://doi.org/10.1093/acprof:oso/9780199534920.003.0016\">10.1093/acprof:oso/9780199534920.003.0016</a>","apa":"Hausel, T. (2010). S-Duality in HyperkäHler Hodge Theory. In <i>The Many Facets of Geometry: A Tribute to Nigel Hitchin</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/acprof:oso/9780199534920.003.0016\">https://doi.org/10.1093/acprof:oso/9780199534920.003.0016</a>","mla":"Hausel, Tamás. “S-Duality in HyperkäHler Hodge Theory.” <i>The Many Facets of Geometry: A Tribute to Nigel Hitchin</i>, Oxford University Press, 2010, doi:<a href=\"https://doi.org/10.1093/acprof:oso/9780199534920.003.0016\">10.1093/acprof:oso/9780199534920.003.0016</a>."}},{"publisher":"American Association for the Advancement of Science","intvolume":"       329","publication":"Science","status":"public","publication_status":"published","page":"413 - 417","citation":{"short":"V. Busskamp, J. Duebel, D. Bálya, M. Fradot, T. Viney, S. Siegert, A. Groner, E. Cabuy, V. Forster, M. Seeliger, M. Biel, P. Humphries, M. Pâques, S. Mohand Saïd, D. Trono, K. Deisseroth, J. Sähel, S. Picaud, B. Roska, Science 329 (2010) 413–417.","ista":"Busskamp V, Duebel J, Bálya D, Fradot M, Viney T, Siegert S, Groner A, Cabuy E, Forster V, Seeliger M, Biel M, Humphries P, Pâques M, Mohand Saïd S, Trono D, Deisseroth K, Sähel J, Picaud S, Roska B. 2010. Genetic reactivation of cone photoreceptors restores visual responses in retinitis pigmentosa. Science. 329(5990), 413–417.","chicago":"Busskamp, Volker, Jens Duebel, Dávid Bálya, Mathias Fradot, Tim Viney, Sandra Siegert, Anna Groner, et al. “Genetic Reactivation of Cone Photoreceptors Restores Visual Responses in Retinitis Pigmentosa.” <i>Science</i>. American Association for the Advancement of Science, 2010. <a href=\"https://doi.org/10.1126/science.1190897\">https://doi.org/10.1126/science.1190897</a>.","ieee":"V. Busskamp <i>et al.</i>, “Genetic reactivation of cone photoreceptors restores visual responses in retinitis pigmentosa,” <i>Science</i>, vol. 329, no. 5990. American Association for the Advancement of Science, pp. 413–417, 2010.","mla":"Busskamp, Volker, et al. “Genetic Reactivation of Cone Photoreceptors Restores Visual Responses in Retinitis Pigmentosa.” <i>Science</i>, vol. 329, no. 5990, American Association for the Advancement of Science, 2010, pp. 413–17, doi:<a href=\"https://doi.org/10.1126/science.1190897\">10.1126/science.1190897</a>.","ama":"Busskamp V, Duebel J, Bálya D, et al. Genetic reactivation of cone photoreceptors restores visual responses in retinitis pigmentosa. <i>Science</i>. 2010;329(5990):413-417. doi:<a href=\"https://doi.org/10.1126/science.1190897\">10.1126/science.1190897</a>","apa":"Busskamp, V., Duebel, J., Bálya, D., Fradot, M., Viney, T., Siegert, S., … Roska, B. (2010). Genetic reactivation of cone photoreceptors restores visual responses in retinitis pigmentosa. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1190897\">https://doi.org/10.1126/science.1190897</a>"},"publist_id":"5310","_id":"1800","author":[{"last_name":"Busskamp","first_name":"Volker","full_name":"Busskamp, Volker"},{"last_name":"Duebel","first_name":"Jens","full_name":"Duebel, Jens"},{"first_name":"Dávid","last_name":"Bálya","full_name":"Bálya, Dávid"},{"full_name":"Fradot, Mathias","last_name":"Fradot","first_name":"Mathias"},{"first_name":"Tim","last_name":"Viney","full_name":"Viney, Tim J"},{"id":"36ACD32E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8635-0877","first_name":"Sandra","last_name":"Siegert","full_name":"Sandra Siegert"},{"full_name":"Groner, Anna C","last_name":"Groner","first_name":"Anna"},{"full_name":"Cabuy, Erik","first_name":"Erik","last_name":"Cabuy"},{"first_name":"Valérie","last_name":"Forster","full_name":"Forster, Valérie"},{"full_name":"Seeliger, Mathias W","first_name":"Mathias","last_name":"Seeliger"},{"last_name":"Biel","first_name":"Martin","full_name":"Biel, Martin"},{"full_name":"Humphries, Peter","first_name":"Peter","last_name":"Humphries"},{"full_name":"Pâques, Michel","first_name":"Michel","last_name":"Pâques"},{"first_name":"Saddek","last_name":"Mohand Saïd","full_name":"Mohand-Saïd, Saddek"},{"full_name":"Trono, Didier","last_name":"Trono","first_name":"Didier"},{"first_name":"Karl","last_name":"Deisseroth","full_name":"Deisseroth, Karl A"},{"full_name":"Sähel, José A","last_name":"Sähel","first_name":"José"},{"full_name":"Picaud, Serge A","first_name":"Serge","last_name":"Picaud"},{"last_name":"Roska","first_name":"Botond","full_name":"Roska, Botond M"}],"year":"2010","date_updated":"2021-01-12T06:53:17Z","extern":1,"date_published":"2010-07-23T00:00:00Z","type":"journal_article","month":"07","quality_controlled":0,"abstract":[{"lang":"eng","text":"Retinitis pigmentosa refers to a diverse group of hereditary diseases that lead to incurable blindness, affecting two million people worldwide. As a common pathology, rod photoreceptors die early, whereas light-insensitive, morphologically altered cone photoreceptors persist longer. It is unknown if these cones are accessible for therapeutic intervention. Here, we show that expression of archaebacterial halorhodopsin in light-insensitive cones can substitute for the native phototransduction cascade and restore light sensitivity in mouse models of retinitis pigmentosa. Resensitized photoreceptors activate all retinal cone pathways, drive sophisticated retinal circuit functions (including directional selectivity), activate cortical circuits, and mediate visually guided behaviors. Using human ex vivo retinas, we show that halorhodopsin can reactivate light-insensitive human photoreceptors. Finally, we identified blind patients with persisting, light-insensitive cones for potential halorhodopsin-based therapy."}],"acknowledgement":"This study was supported by Friedrich Miescher Institute funds; a U.S. Office of Naval Research Naval International Cooperative Opportunities in Science and Technology Program grant; a Marie Curie Excellence grant and a European Union (EU) HEALTH-F2-223156 grant to B.R.; a grant from the EU (RETICIRC) to B.R. and S.P.; grants from the Agence nationale de la recherche (MEDINAS, RETINE) to S.P.; a Center Grant from Foundation Fighting Blindness (U.S.) to S.M.-S. and J.A.S.; grants from the Swiss National Science Foundation and the EU to D.T.; a grant from the EU (TREATRUSH) to J.A.S., S.P., and B.R.; a Marie Curie Postdoctoral Fellowship to D.B.; and a National Centers of Competence in Research Frontiers in Genetics fellowship to V.B. and A.C.G. The Ocular Genetics Unit at Trinity College Dublin is supported by Science Foundation Ireland","day":"23","title":"Genetic reactivation of cone photoreceptors restores visual responses in retinitis pigmentosa","volume":329,"date_created":"2018-12-11T11:54:05Z","doi":"10.1126/science.1190897","issue":"5990"},{"language":[{"iso":"eng"}],"intvolume":"        12","publication_status":"published","pmid":1,"_id":"18022","date_published":"2010-08-19T00:00:00Z","type":"journal_article","month":"08","abstract":[{"text":"The effect of the partial antiaromaticity of biphenylene on its substitution chemistry, its oxidation potential, and its single-molecule conductance is explored. Biphenylene and fluorene molecules with linkers of two amino groups or two cyclic thioether groups were synthesized and their conduction properties were investigated using scanning tunneling microscopy (STM) break-junction techniques and DFT calculations. Despite the partial antiaromaticity of biphenylene, which causes the biphenylenes to be much more easily oxidizable, no significant increase in molecular conductance was found.","lang":"eng"}],"external_id":{"pmid":["20722383"]},"publication_identifier":{"eissn":["1523-7052"],"issn":["1523-7060"]},"title":"The electrical properties of biphenylenes","date_created":"2024-09-09T12:58:29Z","doi":"10.1021/ol1017036","oa_version":"None","article_processing_charge":"No","publisher":"American Chemical Society","scopus_import":"1","status":"public","publication":"Organic Letters","page":"4114-4117","citation":{"mla":"Schneebeli, Severin, et al. “The Electrical Properties of Biphenylenes.” <i>Organic Letters</i>, vol. 12, no. 18, American Chemical Society, 2010, pp. 4114–17, doi:<a href=\"https://doi.org/10.1021/ol1017036\">10.1021/ol1017036</a>.","ieee":"S. Schneebeli <i>et al.</i>, “The electrical properties of biphenylenes,” <i>Organic Letters</i>, vol. 12, no. 18. American Chemical Society, pp. 4114–4117, 2010.","apa":"Schneebeli, S., Kamenetska, M., Foss, F., Vazquez, H., Skouta, R., Hybertsen, M., … Breslow, R. (2010). The electrical properties of biphenylenes. <i>Organic Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ol1017036\">https://doi.org/10.1021/ol1017036</a>","ama":"Schneebeli S, Kamenetska M, Foss F, et al. The electrical properties of biphenylenes. <i>Organic Letters</i>. 2010;12(18):4114-4117. doi:<a href=\"https://doi.org/10.1021/ol1017036\">10.1021/ol1017036</a>","ista":"Schneebeli S, Kamenetska M, Foss F, Vazquez H, Skouta R, Hybertsen M, Venkataraman L, Breslow R. 2010. The electrical properties of biphenylenes. Organic Letters. 12(18), 4114–4117.","chicago":"Schneebeli, Severin, Maria Kamenetska, Frank Foss, Hector Vazquez, Rachid Skouta, Mark Hybertsen, Latha Venkataraman, and Ronald Breslow. “The Electrical Properties of Biphenylenes.” <i>Organic Letters</i>. American Chemical Society, 2010. <a href=\"https://doi.org/10.1021/ol1017036\">https://doi.org/10.1021/ol1017036</a>.","short":"S. Schneebeli, M. Kamenetska, F. Foss, H. Vazquez, R. Skouta, M. Hybertsen, L. Venkataraman, R. Breslow, Organic Letters 12 (2010) 4114–4117."},"OA_type":"closed access","author":[{"full_name":"Schneebeli, Severin","first_name":"Severin","last_name":"Schneebeli"},{"full_name":"Kamenetska, Maria","first_name":"Maria","last_name":"Kamenetska"},{"full_name":"Foss, Frank","first_name":"Frank","last_name":"Foss"},{"full_name":"Vazquez, Hector","last_name":"Vazquez","first_name":"Hector"},{"last_name":"Skouta","first_name":"Rachid","full_name":"Skouta, Rachid"},{"full_name":"Hybertsen, Mark","last_name":"Hybertsen","first_name":"Mark"},{"orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","last_name":"Venkataraman","first_name":"Latha","full_name":"Venkataraman, Latha"},{"full_name":"Breslow, Ronald","first_name":"Ronald","last_name":"Breslow"}],"year":"2010","date_updated":"2025-01-03T09:59:25Z","extern":"1","article_type":"letter_note","quality_controlled":"1","day":"19","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":12,"issue":"18"},{"language":[{"iso":"eng"}],"publication_status":"published","intvolume":"         1","_id":"18023","date_published":"2010-06-22T00:00:00Z","abstract":[{"lang":"eng","text":"We measure the conductance of single Au−molecule−Au junctions with a series of air-stable diphenylphosphine-terminated molecules using the scanning tunneling microscope-based break junction technique. Thousands of conductance versus displacement traces collected for each molecule are used to statistically analyze junction conductance and evolution upon elongation. Measured conductances for a series of alkane-based molecules exhibit an exponential decrease with increasing length, as expected for saturated molecules, with a tunneling decay constant of 0.98 ± 0.04. Measurements of junction elongation indicate strong metal−molecule binding, with a length that increases with the number of methylene groups in the backbone. Measured conductance histograms for four molecules with short, unsaturated backbones (e.g., benzene) are much broader with less well-defined peaks. These measurements are supported by density function theory calculations. The phosphine binds selectively to under-coordinated gold atoms through a donor−acceptor bond with a binding energy of about 1 eV. The calculated tunnel coupling correlates very well with experiment."}],"type":"journal_article","month":"06","publication_identifier":{"eissn":["1948-7185"]},"title":"Reliable formation of single molecule junctions with air-stable diphenylphosphine linkers","article_processing_charge":"No","oa_version":"None","doi":"10.1021/jz100656s","date_created":"2024-09-09T12:59:13Z","scopus_import":"1","publisher":"American Chemical Society","status":"public","publication":"The Journal of Physical Chemistry Letters","citation":{"ieee":"R. Parameswaran <i>et al.</i>, “Reliable formation of single molecule junctions with air-stable diphenylphosphine linkers,” <i>The Journal of Physical Chemistry Letters</i>, vol. 1, no. 14. American Chemical Society, pp. 2114–2119, 2010.","apa":"Parameswaran, R., Widawsky, J. R., Vázquez, H., Park, Y. S., Boardman, B. M., Nuckolls, C., … Venkataraman, L. (2010). Reliable formation of single molecule junctions with air-stable diphenylphosphine linkers. <i>The Journal of Physical Chemistry Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jz100656s\">https://doi.org/10.1021/jz100656s</a>","ama":"Parameswaran R, Widawsky JR, Vázquez H, et al. Reliable formation of single molecule junctions with air-stable diphenylphosphine linkers. <i>The Journal of Physical Chemistry Letters</i>. 2010;1(14):2114-2119. doi:<a href=\"https://doi.org/10.1021/jz100656s\">10.1021/jz100656s</a>","mla":"Parameswaran, R., et al. “Reliable Formation of Single Molecule Junctions with Air-Stable Diphenylphosphine Linkers.” <i>The Journal of Physical Chemistry Letters</i>, vol. 1, no. 14, American Chemical Society, 2010, pp. 2114–19, doi:<a href=\"https://doi.org/10.1021/jz100656s\">10.1021/jz100656s</a>.","ista":"Parameswaran R, Widawsky JR, Vázquez H, Park YS, Boardman BM, Nuckolls C, Steigerwald ML, Hybertsen MS, Venkataraman L. 2010. Reliable formation of single molecule junctions with air-stable diphenylphosphine linkers. The Journal of Physical Chemistry Letters. 1(14), 2114–2119.","short":"R. Parameswaran, J.R. Widawsky, H. Vázquez, Y.S. Park, B.M. Boardman, C. Nuckolls, M.L. Steigerwald, M.S. Hybertsen, L. Venkataraman, The Journal of Physical Chemistry Letters 1 (2010) 2114–2119.","chicago":"Parameswaran, R., J. R. Widawsky, H. Vázquez, Y. S. Park, B. M. Boardman, C. Nuckolls, M. L. Steigerwald, M. S. Hybertsen, and Latha Venkataraman. “Reliable Formation of Single Molecule Junctions with Air-Stable Diphenylphosphine Linkers.” <i>The Journal of Physical Chemistry Letters</i>. American Chemical Society, 2010. <a href=\"https://doi.org/10.1021/jz100656s\">https://doi.org/10.1021/jz100656s</a>."},"OA_type":"closed access","page":"2114-2119","year":"2010","author":[{"full_name":"Parameswaran, R.","last_name":"Parameswaran","first_name":"R."},{"first_name":"J. R.","last_name":"Widawsky","full_name":"Widawsky, J. R."},{"full_name":"Vázquez, H.","last_name":"Vázquez","first_name":"H."},{"first_name":"Y. S.","last_name":"Park","full_name":"Park, Y. S."},{"first_name":"B. M.","last_name":"Boardman","full_name":"Boardman, B. M."},{"full_name":"Nuckolls, C.","first_name":"C.","last_name":"Nuckolls"},{"first_name":"M. L.","last_name":"Steigerwald","full_name":"Steigerwald, M. L."},{"full_name":"Hybertsen, M. S.","last_name":"Hybertsen","first_name":"M. S."},{"first_name":"Latha","last_name":"Venkataraman","full_name":"Venkataraman, Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","orcid":"0000-0002-6957-6089"}],"date_updated":"2025-01-03T10:01:10Z","extern":"1","quality_controlled":"1","article_type":"letter_note","day":"22","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":1,"issue":"14"},{"quality_controlled":"1","article_type":"letter_note","oa":1,"day":"25","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_place":"repository","volume":10,"issue":"7","scopus_import":"1","publisher":"American Chemical Society","status":"public","publication":"Nano Letters","page":"2470-2474","citation":{"mla":"Dell’Angela, M., et al. “Relating Energy Level Alignment and Amine-Linked Single Molecule Junction Conductance.” <i>Nano Letters</i>, vol. 10, no. 7, American Chemical Society, 2010, pp. 2470–74, doi:<a href=\"https://doi.org/10.1021/nl100817h\">10.1021/nl100817h</a>.","apa":"Dell’Angela, M., Kladnik, G., Cossaro, A., Verdini, A., Kamenetska, M., Tamblyn, I., … Venkataraman, L. (2010). Relating energy level alignment and amine-linked single molecule junction conductance. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/nl100817h\">https://doi.org/10.1021/nl100817h</a>","ama":"Dell’Angela M, Kladnik G, Cossaro A, et al. Relating energy level alignment and amine-linked single molecule junction conductance. <i>Nano Letters</i>. 2010;10(7):2470-2474. doi:<a href=\"https://doi.org/10.1021/nl100817h\">10.1021/nl100817h</a>","ieee":"M. Dell’Angela <i>et al.</i>, “Relating energy level alignment and amine-linked single molecule junction conductance,” <i>Nano Letters</i>, vol. 10, no. 7. American Chemical Society, pp. 2470–2474, 2010.","chicago":"Dell’Angela, M., G. Kladnik, A. Cossaro, A. Verdini, M. Kamenetska, I. Tamblyn, S. Y. Quek, et al. “Relating Energy Level Alignment and Amine-Linked Single Molecule Junction Conductance.” <i>Nano Letters</i>. American Chemical Society, 2010. <a href=\"https://doi.org/10.1021/nl100817h\">https://doi.org/10.1021/nl100817h</a>.","ista":"Dell’Angela M, Kladnik G, Cossaro A, Verdini A, Kamenetska M, Tamblyn I, Quek SY, Neaton JB, Cvetko D, Morgante A, Venkataraman L. 2010. Relating energy level alignment and amine-linked single molecule junction conductance. Nano Letters. 10(7), 2470–2474.","short":"M. Dell’Angela, G. Kladnik, A. Cossaro, A. Verdini, M. Kamenetska, I. Tamblyn, S.Y. Quek, J.B. Neaton, D. Cvetko, A. Morgante, L. Venkataraman, Nano Letters 10 (2010) 2470–2474."},"OA_type":"green","year":"2010","author":[{"full_name":"Dell’Angela, M.","last_name":"Dell’Angela","first_name":"M."},{"full_name":"Kladnik, G.","first_name":"G.","last_name":"Kladnik"},{"last_name":"Cossaro","first_name":"A.","full_name":"Cossaro, A."},{"last_name":"Verdini","first_name":"A.","full_name":"Verdini, A."},{"first_name":"M.","last_name":"Kamenetska","full_name":"Kamenetska, M."},{"full_name":"Tamblyn, I.","first_name":"I.","last_name":"Tamblyn"},{"full_name":"Quek, S. Y.","first_name":"S. Y.","last_name":"Quek"},{"full_name":"Neaton, J. B.","first_name":"J. B.","last_name":"Neaton"},{"full_name":"Cvetko, D.","first_name":"D.","last_name":"Cvetko"},{"last_name":"Morgante","first_name":"A.","full_name":"Morgante, A."},{"id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","orcid":"0000-0002-6957-6089","first_name":"Latha","last_name":"Venkataraman","full_name":"Venkataraman, Latha"}],"date_updated":"2025-01-03T10:03:22Z","extern":"1","abstract":[{"text":"Using photoemission spectroscopy, we determine the relationship between electronic energy level alignment at a metal−molecule interface and single-molecule junction transport data. We measure the position of the highest occupied molecular orbital (HOMO) relative to the Au metal Fermi level for three 1,4-benzenediamine derivatives on Au(111) and Au(110) with ultraviolet and resonant X-ray photoemission spectroscopy. We compare these results to scanning tunnelling microscope-based break-junction measurements of single molecule conductance and to first-principles calculations. We find that the energy difference between the HOMO and Fermi level for the three molecules adsorbed on Au(111) correlate well with changes in conductance and agree well with quasiparticle energies computed from first-principles calculations incorporating self-energy corrections. On the Au(110) that presents Au atoms with lower-coordination, critical in break-junction conductance measurements, we see that the HOMO level shifts further from the Fermi level. These results provide the first direct comparison of spectroscopic energy level alignment measurements with single molecule junction transport data.","lang":"eng"}],"arxiv":1,"type":"journal_article","month":"06","external_id":{"arxiv":["1006.4187"]},"publication_identifier":{"issn":["1530-6984"],"eissn":["1530-6992"]},"title":"Relating energy level alignment and amine-linked single molecule junction conductance","main_file_link":[{"url":"https://arxiv.org/abs/1006.4187","open_access":"1"}],"article_processing_charge":"No","oa_version":"Preprint","doi":"10.1021/nl100817h","date_created":"2024-09-09T13:00:09Z","language":[{"iso":"eng"}],"publication_status":"published","intvolume":"        10","_id":"18024","date_published":"2010-06-25T00:00:00Z"},{"_id":"18027","date_published":"2010-04-27T00:00:00Z","language":[{"iso":"eng"}],"pmid":1,"publication_status":"published","intvolume":"       132","article_processing_charge":"No","oa_version":"None","doi":"10.1021/ja1015348","date_created":"2024-09-09T13:46:26Z","title":"Conductance and geometry of pyridine-linked single-molecule junctions","external_id":{"pmid":["20423080"]},"abstract":[{"text":"We have measured the conductance and characterized molecule−electrode binding geometries of four pyridine-terminated molecules by elongating and then compressing gold point contacts in a solution of molecules. We have found that all pyridine-terminated molecules exhibit bistable conductance signatures, signifying that the nature of the pyridine−gold bond allows two distinct conductance states that are accessed as the gold−molecule−gold junction is elongated. We have identified the low-conductance state as corresponding to a molecule fully stretched out between the gold electrodes, where the distance between contacts correlates with the length of the molecule; the high-conductance state is due to a molecule bound at an angle. For all molecules, we have found that the distribution of junction elongations in the low-conductance state is the same, while in the high-conductance state, the most likely elongation length increases linearly with molecule length. The results of first-principles conductance calculations for the four molecules in the low-conductance geometry agree well with the experimental results and show that the dominant conducting channel in the conjugated pyridine-linked molecules is through the π* orbital.","lang":"eng"}],"month":"04","type":"journal_article","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"year":"2010","author":[{"full_name":"Kamenetska, M.","first_name":"M.","last_name":"Kamenetska"},{"first_name":"Su Ying","last_name":"Quek","full_name":"Quek, Su Ying"},{"last_name":"Whalley","first_name":"A. C.","full_name":"Whalley, A. C."},{"full_name":"Steigerwald, M. L.","last_name":"Steigerwald","first_name":"M. L."},{"full_name":"Choi, H. J.","last_name":"Choi","first_name":"H. J."},{"full_name":"Louie, Steven G.","last_name":"Louie","first_name":"Steven G."},{"last_name":"Nuckolls","first_name":"C.","full_name":"Nuckolls, C."},{"last_name":"Hybertsen","first_name":"M. S.","full_name":"Hybertsen, M. S."},{"full_name":"Neaton, J. B.","last_name":"Neaton","first_name":"J. B."},{"id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","orcid":"0000-0002-6957-6089","full_name":"Venkataraman, Latha","last_name":"Venkataraman","first_name":"Latha"}],"extern":"1","date_updated":"2025-01-03T10:09:53Z","scopus_import":"1","publisher":"American Chemical Society","page":"6817-6821","OA_type":"closed access","citation":{"ista":"Kamenetska M, Quek SY, Whalley AC, Steigerwald ML, Choi HJ, Louie SG, Nuckolls C, Hybertsen MS, Neaton JB, Venkataraman L. 2010. Conductance and geometry of pyridine-linked single-molecule junctions. Journal of the American Chemical Society. 132(19), 6817–6821.","chicago":"Kamenetska, M., Su Ying Quek, A. C. Whalley, M. L. Steigerwald, H. J. Choi, Steven G. Louie, C. Nuckolls, M. S. Hybertsen, J. B. Neaton, and Latha Venkataraman. “Conductance and Geometry of Pyridine-Linked Single-Molecule Junctions.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2010. <a href=\"https://doi.org/10.1021/ja1015348\">https://doi.org/10.1021/ja1015348</a>.","short":"M. Kamenetska, S.Y. Quek, A.C. Whalley, M.L. Steigerwald, H.J. Choi, S.G. Louie, C. Nuckolls, M.S. Hybertsen, J.B. Neaton, L. Venkataraman, Journal of the American Chemical Society 132 (2010) 6817–6821.","ama":"Kamenetska M, Quek SY, Whalley AC, et al. Conductance and geometry of pyridine-linked single-molecule junctions. <i>Journal of the American Chemical Society</i>. 2010;132(19):6817-6821. doi:<a href=\"https://doi.org/10.1021/ja1015348\">10.1021/ja1015348</a>","mla":"Kamenetska, M., et al. “Conductance and Geometry of Pyridine-Linked Single-Molecule Junctions.” <i>Journal of the American Chemical Society</i>, vol. 132, no. 19, American Chemical Society, 2010, pp. 6817–21, doi:<a href=\"https://doi.org/10.1021/ja1015348\">10.1021/ja1015348</a>.","apa":"Kamenetska, M., Quek, S. Y., Whalley, A. C., Steigerwald, M. L., Choi, H. J., Louie, S. G., … Venkataraman, L. (2010). Conductance and geometry of pyridine-linked single-molecule junctions. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja1015348\">https://doi.org/10.1021/ja1015348</a>","ieee":"M. Kamenetska <i>et al.</i>, “Conductance and geometry of pyridine-linked single-molecule junctions,” <i>Journal of the American Chemical Society</i>, vol. 132, no. 19. American Chemical Society, pp. 6817–6821, 2010."},"status":"public","publication":"Journal of the American Chemical Society","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"27","issue":"19","volume":132,"quality_controlled":"1","article_type":"original"},{"_id":"18338","author":[{"id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","orcid":"0000-0001-9699-8730","full_name":"Bronstein, Alexander","first_name":"Alexander","last_name":"Bronstein"},{"full_name":"Bronstein, Michael M.","last_name":"Bronstein","first_name":"Michael M."}],"year":"2010","date_updated":"2024-12-02T14:07:41Z","extern":"1","date_published":"2010-01-01T00:00:00Z","conference":{"name":"ECCV: European Conference on Computer Vision","start_date":"2010-09-05","end_date":"2010-09-10","location":"Heraklion, Greece"},"publisher":"Springer Nature","scopus_import":"1","language":[{"iso":"eng"}],"status":"public","publication":"11th European Conference on Computer Vision","intvolume":"      6312","publication_status":"published","page":"197–208","citation":{"mla":"Bronstein, Alex M., and Michael M. Bronstein. “Spatially-Sensitive Affine-Invariant Image Descriptors.” <i>11th European Conference on Computer Vision</i>, vol. 6312, Springer Nature, 2010, pp. 197–208, doi:<a href=\"https://doi.org/10.1007/978-3-642-15552-9_15\">10.1007/978-3-642-15552-9_15</a>.","ama":"Bronstein AM, Bronstein MM. Spatially-sensitive affine-invariant image descriptors. In: <i>11th European Conference on Computer Vision</i>. Vol 6312. Springer Nature; 2010:197–208. doi:<a href=\"https://doi.org/10.1007/978-3-642-15552-9_15\">10.1007/978-3-642-15552-9_15</a>","ieee":"A. M. Bronstein and M. M. Bronstein, “Spatially-sensitive affine-invariant image descriptors,” in <i>11th European Conference on Computer Vision</i>, Heraklion, Greece, 2010, vol. 6312, pp. 197–208.","apa":"Bronstein, A. M., &#38; Bronstein, M. M. (2010). Spatially-sensitive affine-invariant image descriptors. In <i>11th European Conference on Computer Vision</i> (Vol. 6312, pp. 197–208). Heraklion, Greece: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-642-15552-9_15\">https://doi.org/10.1007/978-3-642-15552-9_15</a>","chicago":"Bronstein, Alex M., and Michael M. Bronstein. “Spatially-Sensitive Affine-Invariant Image Descriptors.” In <i>11th European Conference on Computer Vision</i>, 6312:197–208. Springer Nature, 2010. <a href=\"https://doi.org/10.1007/978-3-642-15552-9_15\">https://doi.org/10.1007/978-3-642-15552-9_15</a>.","short":"A.M. Bronstein, M.M. Bronstein, in:, 11th European Conference on Computer Vision, Springer Nature, 2010, pp. 197–208.","ista":"Bronstein AM, Bronstein MM. 2010. Spatially-sensitive affine-invariant image descriptors. 11th European Conference on Computer Vision. ECCV: European Conference on Computer Vision, LNCS, vol. 6312, 197–208."},"alternative_title":["LNCS"],"user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","title":"Spatially-sensitive affine-invariant image descriptors","volume":6312,"doi":"10.1007/978-3-642-15552-9_15","oa_version":"None","date_created":"2024-10-15T11:20:54Z","article_processing_charge":"No","type":"conference","month":"01","abstract":[{"lang":"eng","text":"Invariant image descriptors play an important role in many computer vision and pattern recognition problems such as image search and retrieval. A dominant paradigm today is that of “bags of features”, a representation of images as distributions of primitive visual elements. The main disadvantage of this approach is the loss of spatial relations between features, which often carry important information about the image. In this paper, we show how to construct spatially-sensitive image descriptors in which both the features and their relation are affine-invariant. Our construction is based on a vocabulary of pairs of features coupled with a vocabulary of invariant spatial relations between the features. Experimental results show the advantage of our approach in image retrieval applications."}],"quality_controlled":"1","publication_identifier":{"eisbn":["9783642155529"],"isbn":["9783642155512"],"eissn":["1611-3349"],"issn":["0302-9743"]}},{"quality_controlled":"1","abstract":[{"text":"Automatic detection of symmetries, regularity, and repetitive structures in 3D geometry is a fundamental problem in shape analysis and pattern recognition with applications in computer vision and graphics. Especially challenging is to detect intrinsic regularity, where the repetitions are on an intrinsic grid, without any apparent Euclidean pattern to describe the shape, but rising out of (near) isometric deformation of the underlying surface. In this paper, we employ multidimensional scaling to reduce the problem of intrinsic structure detection to a simpler problem of 2D grid detection. Potential 2D grids are then identified using an autocorrelation analysis, refined using local fitting, validated, and finally projected back to the spatial domain. We test the detection algorithm on a variety of scanned plaster models in presence of imperfections like missing data, noise and outliers. We also present a range of applications including scan completion, shape editing, super-resolution, and structural correspondence.","lang":"eng"}],"month":"01","type":"conference","acknowledgement":"We thank Helmut Pottmann and the anonymous reviewers for their comments and helpful suggestions. Niloy Mitra was partially supported by a Microsoft outstanding young faculty fellowship.","publication_identifier":{"isbn":["9783642155574","9783642155581"],"issn":["0302-9743","1611-3349"]},"user_id":"ea97e931-d5af-11eb-85d4-e6957dddbf17","alternative_title":["LNCS"],"article_processing_charge":"No","doi":"10.1007/978-3-642-15558-1_29","oa_version":"None","date_created":"2024-10-15T11:20:54Z","volume":6313,"title":"Intrinsic regularity detection in 3D geometry","language":[{"iso":"eng"}],"scopus_import":"1","publisher":"Springer Nature","conference":{"location":"Heraklion, Greece","start_date":"2010-09-05","end_date":"2010-09-10","name":"ECCV: European Conference on Computer Vision"},"citation":{"apa":"Mitra, N. J., Bronstein, A. M., &#38; Bronstein, M. (2010). Intrinsic regularity detection in 3D geometry. In <i>11th European Conference on Computer Vision</i> (Vol. 6313, pp. 398–410). Heraklion, Greece: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-642-15558-1_29\">https://doi.org/10.1007/978-3-642-15558-1_29</a>","ama":"Mitra NJ, Bronstein AM, Bronstein M. Intrinsic regularity detection in 3D geometry. In: <i>11th European Conference on Computer Vision</i>. Vol 6313. Springer Nature; 2010:398–410. doi:<a href=\"https://doi.org/10.1007/978-3-642-15558-1_29\">10.1007/978-3-642-15558-1_29</a>","mla":"Mitra, Niloy J., et al. “Intrinsic Regularity Detection in 3D Geometry.” <i>11th European Conference on Computer Vision</i>, vol. 6313, Springer Nature, 2010, pp. 398–410, doi:<a href=\"https://doi.org/10.1007/978-3-642-15558-1_29\">10.1007/978-3-642-15558-1_29</a>.","ieee":"N. J. Mitra, A. M. Bronstein, and M. Bronstein, “Intrinsic regularity detection in 3D geometry,” in <i>11th European Conference on Computer Vision</i>, Heraklion, Greece, 2010, vol. 6313, pp. 398–410.","short":"N.J. Mitra, A.M. Bronstein, M. Bronstein, in:, 11th European Conference on Computer Vision, Springer Nature, 2010, pp. 398–410.","chicago":"Mitra, Niloy J., Alex M. Bronstein, and Michael Bronstein. “Intrinsic Regularity Detection in 3D Geometry.” In <i>11th European Conference on Computer Vision</i>, 6313:398–410. Springer Nature, 2010. <a href=\"https://doi.org/10.1007/978-3-642-15558-1_29\">https://doi.org/10.1007/978-3-642-15558-1_29</a>.","ista":"Mitra NJ, Bronstein AM, Bronstein M. 2010. Intrinsic regularity detection in 3D geometry. 11th European Conference on Computer Vision. ECCV: European Conference on Computer Vision, LNCS, vol. 6313, 398–410."},"page":"398–410","publication_status":"published","publication":"11th European Conference on Computer Vision","intvolume":"      6313","status":"public","year":"2010","author":[{"first_name":"Niloy J.","last_name":"Mitra","full_name":"Mitra, Niloy J."},{"id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","orcid":"0000-0001-9699-8730","full_name":"Bronstein, Alexander","last_name":"Bronstein","first_name":"Alexander"},{"last_name":"Bronstein","first_name":"Michael","full_name":"Bronstein, Michael"}],"_id":"18339","date_published":"2010-01-01T00:00:00Z","extern":"1","date_updated":"2024-11-18T14:31:56Z"}]