[{"issue":"5","year":"2011","status":"public","corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"Submitted Version","oa":1,"article_processing_charge":"No","department":[{"_id":"CaHe"}],"month":"10","date_published":"2011-10-01T00:00:00Z","publication_status":"published","date_updated":"2025-09-30T08:42:02Z","publisher":"Elsevier","quality_controlled":"1","page":"508 - 514","author":[{"first_name":"Jean-Léon","full_name":"Maître, Jean-Léon","id":"48F1E0D8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3688-1474","last_name":"Maître"},{"id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J","first_name":"Carl-Philipp J","last_name":"Heisenberg","orcid":"0000-0002-0912-4566"}],"doi":"10.1016/j.ceb.2011.07.004","_id":"3397","type":"journal_article","publication":"Current Opinion in Cell Biology","publist_id":"3211","citation":{"ista":"Maître J-L, Heisenberg C-PJ. 2011. The role of adhesion energy in controlling cell-cell contacts. Current Opinion in Cell Biology. 23(5), 508–514.","short":"J.-L. Maître, C.-P.J. Heisenberg, Current Opinion in Cell Biology 23 (2011) 508–514.","chicago":"Maître, Jean-Léon, and Carl-Philipp J Heisenberg. “The Role of Adhesion Energy in Controlling Cell-Cell Contacts.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.ceb.2011.07.004\">https://doi.org/10.1016/j.ceb.2011.07.004</a>.","mla":"Maître, Jean-Léon, and Carl-Philipp J. Heisenberg. “The Role of Adhesion Energy in Controlling Cell-Cell Contacts.” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 5, Elsevier, 2011, pp. 508–14, doi:<a href=\"https://doi.org/10.1016/j.ceb.2011.07.004\">10.1016/j.ceb.2011.07.004</a>.","ieee":"J.-L. Maître and C.-P. J. Heisenberg, “The role of adhesion energy in controlling cell-cell contacts,” <i>Current Opinion in Cell Biology</i>, vol. 23, no. 5. Elsevier, pp. 508–514, 2011.","ama":"Maître J-L, Heisenberg C-PJ. The role of adhesion energy in controlling cell-cell contacts. <i>Current Opinion in Cell Biology</i>. 2011;23(5):508-514. doi:<a href=\"https://doi.org/10.1016/j.ceb.2011.07.004\">10.1016/j.ceb.2011.07.004</a>","apa":"Maître, J.-L., &#38; Heisenberg, C.-P. J. (2011). The role of adhesion energy in controlling cell-cell contacts. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2011.07.004\">https://doi.org/10.1016/j.ceb.2011.07.004</a>"},"external_id":{"isi":["000296040800002"]},"intvolume":"        23","title":"The role of adhesion energy in controlling cell-cell contacts","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3188705/"}],"volume":23,"abstract":[{"lang":"eng","text":"Recent advances in microscopy techniques and biophysical measurements have provided novel insight into the molecular, cellular and biophysical basis of cell adhesion. However, comparably little is known about a core element of cell–cell adhesion—the energy of adhesion at the cell–cell contact. In this review, we discuss approaches to understand the nature and regulation of adhesion energy, and propose strategies to determine adhesion energy between cells in vitro and in vivo."}],"day":"01","date_created":"2018-12-11T12:03:06Z","scopus_import":"1","isi":1},{"volume":6,"file_date_updated":"2020-07-14T12:46:12Z","language":[{"iso":"eng"}],"title":"Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior","license":"https://creativecommons.org/licenses/by/4.0/","date_created":"2018-12-11T12:03:07Z","day":"29","abstract":[{"text":"Context-dependent adjustment of mating tactics can drastically increase the mating success of behaviourally flexible animals. We used the ant Cardiocondyla obscurior as a model system to study adaptive adjustment of male mating tactics. This species shows a male diphenism of wingless fighter males and peaceful winged males. Whereas the wingless males stay and exclusively mate in the maternal colony, the mating behaviour of winged males is plastic. They copulate with female sexuals in their natal nests early in life but later disperse in search for sexuals outside. In this study, we observed the nest-leaving behaviour of winged males under different conditions and found that they adaptively adjust the timing of their dispersal to the availability of mating partners, as well as the presence, and even the type of competitors in their natal nests. In colonies with virgin female queens winged males stayed longest when they were the only male in the nest. They left earlier when mating partners were not available or when other males were present. In the presence of wingless, locally mating fighter males, winged males dispersed earlier than in the presence of docile, winged competitors. This suggests that C. obscurior males are capable of estimating their local breeding chances and adaptively adjust their dispersal behaviour in both an opportunistic and a risk-sensitive way, thus showing hitherto unknown behavioural plasticity in social insect males.","lang":"eng"}],"isi":1,"scopus_import":"1","pubrep_id":"377","author":[{"full_name":"Cremer, Sylvia","first_name":"Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868","last_name":"Cremer"},{"last_name":"Schrempf","full_name":"Schrempf, Alexandra","first_name":"Alexandra"},{"first_name":"Jürgen","full_name":"Heinze, Jürgen","last_name":"Heinze"}],"quality_controlled":"1","_id":"3399","doi":"10.1371/journal.pone.0017323","type":"journal_article","publist_id":"3059","publication":"PLoS One","intvolume":"         6","external_id":{"isi":["000289054600009"]},"ddc":["576"],"citation":{"chicago":"Cremer, Sylvia, Alexandra Schrempf, and Jürgen Heinze. “Competition and Opportunity Shape the Reproductive Tactics of Males in the Ant Cardiocondyla Obscurior.” <i>PLoS One</i>. Public Library of Science, 2011. <a href=\"https://doi.org/10.1371/journal.pone.0017323\">https://doi.org/10.1371/journal.pone.0017323</a>.","short":"S. Cremer, A. Schrempf, J. Heinze, PLoS One 6 (2011).","ista":"Cremer S, Schrempf A, Heinze J. 2011. Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior. PLoS One. 6(3), e17323.","apa":"Cremer, S., Schrempf, A., &#38; Heinze, J. (2011). Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0017323\">https://doi.org/10.1371/journal.pone.0017323</a>","ama":"Cremer S, Schrempf A, Heinze J. Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior. <i>PLoS One</i>. 2011;6(3). doi:<a href=\"https://doi.org/10.1371/journal.pone.0017323\">10.1371/journal.pone.0017323</a>","ieee":"S. Cremer, A. Schrempf, and J. Heinze, “Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior,” <i>PLoS One</i>, vol. 6, no. 3. Public Library of Science, 2011.","mla":"Cremer, Sylvia, et al. “Competition and Opportunity Shape the Reproductive Tactics of Males in the Ant Cardiocondyla Obscurior.” <i>PLoS One</i>, vol. 6, no. 3, e17323, Public Library of Science, 2011, doi:<a href=\"https://doi.org/10.1371/journal.pone.0017323\">10.1371/journal.pone.0017323</a>."},"acknowledgement":"This work was supported by the German Science Foundation (www.dfg.de, He 1623/23).","oa":1,"department":[{"_id":"SyCr"}],"article_number":"e17323","article_processing_charge":"No","date_updated":"2025-09-30T08:40:50Z","publication_status":"published","month":"03","date_published":"2011-03-29T00:00:00Z","publisher":"Public Library of Science","year":"2011","issue":"3","status":"public","has_accepted_license":"1","corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png"},"oa_version":"Published Version","file":[{"date_updated":"2020-07-14T12:46:12Z","creator":"system","content_type":"application/pdf","file_size":147367,"access_level":"open_access","checksum":"46f8cbde61f06fcacf8fa297cacfa0e5","file_id":"5162","file_name":"IST-2015-377-v1+1_journal.pone.0017323.pdf","date_created":"2018-12-12T10:15:40Z","relation":"main_file"}]},{"publisher":"Public Library of Science","date_published":"2011-03-01T00:00:00Z","article_type":"original","month":"03","date_updated":"2021-01-12T07:43:14Z","extern":"1","publication_status":"published","article_number":"e1000596","abstract":[{"lang":"eng","text":"The Bicoid morphogen gradient directs the patterning of cell fates along the anterior-posterior axis of the syncytial Drosophila embryo and serves as a paradigm of morphogen-mediated patterning. The simplest models of gradient formation rely on constant protein synthesis and diffusion from anteriorly localized source mRNA, coupled with uniform protein degradation. However, currently such models cannot account for all known gradient characteristics. Recent work has proposed that bicoid mRNA spatial distribution is sufficient to produce the observed protein gradient, minimizing the role of protein transport. Here, we adapt a novel method of fluorescent in situ hybridization to quantify the global spatio-temporal dynamics of bicoid mRNA particles. We determine that &gt;90% of all bicoid mRNA is continuously present within the anterior 20% of the embryo. bicoid mRNA distribution along the body axis remains nearly unchanged despite dynamic mRNA translocation from the embryo core to the cortex. To evaluate the impact of mRNA distribution on protein gradient dynamics, we provide detailed quantitative measurements of nuclear Bicoid levels during the formation of the protein gradient. We find that gradient establishment begins 45 minutes after fertilization and that the gradient requires about 50 minutes to reach peak levels. In numerical simulations of gradient formation, we find that incorporating the actual bicoid mRNA distribution yields a closer prediction of the observed protein dynamics compared to modeling protein production from a point source at the anterior pole. We conclude that the spatial distribution of bicoid mRNA contributes to, but cannot account for, protein gradient formation, and therefore that protein movement, either active or passive, is required for gradient formation."}],"day":"01","date_created":"2018-12-11T12:03:08Z","volume":9,"title":"The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized source","language":[{"iso":"eng"}],"intvolume":"         9","citation":{"ista":"Little S, Tkačik G, Kneeland T, Wieschaus E, Gregor T. 2011. The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized source. PLoS Biology. 9(3), e1000596.","short":"S. Little, G. Tkačik, T. Kneeland, E. Wieschaus, T. Gregor, PLoS Biology 9 (2011).","chicago":"Little, Shawn, Gašper Tkačik, Thomas Kneeland, Eric Wieschaus, and Thomas Gregor. “The Formation of the Bicoid Morphogen Gradient Requires Protein Movement from Anteriorly Localized Source.” <i>PLoS Biology</i>. Public Library of Science, 2011. <a href=\"https://doi.org/10.1371/journal.pbio.1000596\">https://doi.org/10.1371/journal.pbio.1000596</a>.","mla":"Little, Shawn, et al. “The Formation of the Bicoid Morphogen Gradient Requires Protein Movement from Anteriorly Localized Source.” <i>PLoS Biology</i>, vol. 9, no. 3, e1000596, Public Library of Science, 2011, doi:<a href=\"https://doi.org/10.1371/journal.pbio.1000596\">10.1371/journal.pbio.1000596</a>.","ieee":"S. Little, G. Tkačik, T. Kneeland, E. Wieschaus, and T. Gregor, “The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized source,” <i>PLoS Biology</i>, vol. 9, no. 3. Public Library of Science, 2011.","ama":"Little S, Tkačik G, Kneeland T, Wieschaus E, Gregor T. The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized source. <i>PLoS Biology</i>. 2011;9(3). doi:<a href=\"https://doi.org/10.1371/journal.pbio.1000596\">10.1371/journal.pbio.1000596</a>","apa":"Little, S., Tkačik, G., Kneeland, T., Wieschaus, E., &#38; Gregor, T. (2011). The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized source. <i>PLoS Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.1000596\">https://doi.org/10.1371/journal.pbio.1000596</a>"},"oa_version":"None","publist_id":"3057","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"PLoS Biology","doi":"10.1371/journal.pbio.1000596","_id":"3401","author":[{"last_name":"Little","full_name":"Little, Shawn","first_name":"Shawn"},{"id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gasper","full_name":"Tkacik, Gasper","last_name":"Tkacik","orcid":"0000-0002-6699-1455"},{"first_name":"Thomas","full_name":"Kneeland, Thomas","last_name":"Kneeland"},{"last_name":"Wieschaus","first_name":"Eric","full_name":"Wieschaus, Eric"},{"last_name":"Gregor","full_name":"Gregor, Thomas","first_name":"Thomas"}],"year":"2011","status":"public","issue":"3","quality_controlled":"1"},{"citation":{"mla":"Janovjak, Harald L., et al. “Modern Ionotropic Glutamate Receptor with a K+ Selectivity Signature Sequence.” <i>Nature Communications</i>, vol. 2, no. 232, Nature Publishing Group, 2011, pp. 1–6, doi:<a href=\"https://doi.org/10.1038/ncomms1231\">10.1038/ncomms1231</a>.","ieee":"H. L. Janovjak, G. Sandoz, and E. Isacoff, “Modern ionotropic glutamate receptor with a K+ selectivity signature sequence,” <i>Nature Communications</i>, vol. 2, no. 232. Nature Publishing Group, pp. 1–6, 2011.","apa":"Janovjak, H. L., Sandoz, G., &#38; Isacoff, E. (2011). Modern ionotropic glutamate receptor with a K+ selectivity signature sequence. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncomms1231\">https://doi.org/10.1038/ncomms1231</a>","ama":"Janovjak HL, Sandoz G, Isacoff E. Modern ionotropic glutamate receptor with a K+ selectivity signature sequence. <i>Nature Communications</i>. 2011;2(232):1-6. doi:<a href=\"https://doi.org/10.1038/ncomms1231\">10.1038/ncomms1231</a>","ista":"Janovjak HL, Sandoz G, Isacoff E. 2011. Modern ionotropic glutamate receptor with a K+ selectivity signature sequence. Nature Communications. 2(232), 1–6.","chicago":"Janovjak, Harald L, Guillaume Sandoz, and Ehud Isacoff. “Modern Ionotropic Glutamate Receptor with a K+ Selectivity Signature Sequence.” <i>Nature Communications</i>. Nature Publishing Group, 2011. <a href=\"https://doi.org/10.1038/ncomms1231\">https://doi.org/10.1038/ncomms1231</a>.","short":"H.L. Janovjak, G. Sandoz, E. Isacoff, Nature Communications 2 (2011) 1–6."},"ddc":["570","571"],"external_id":{"isi":["000289982600022"]},"intvolume":"         2","publication":"Nature Communications","publist_id":"2997","type":"journal_article","doi":"10.1038/ncomms1231","_id":"3405","quality_controlled":"1","page":"1 - 6","author":[{"first_name":"Harald L","full_name":"Janovjak, Harald L","id":"33BA6C30-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8023-9315","last_name":"Janovjak"},{"last_name":"Sandoz","first_name":"Guillaume","full_name":"Sandoz, Guillaume"},{"first_name":"Ehud","full_name":"Isacoff, Ehud","last_name":"Isacoff"}],"pubrep_id":"832","scopus_import":"1","isi":1,"day":"08","abstract":[{"lang":"eng","text":"Glutamate is the major excitatory neurotransmitter in the mammalian central nervous system and gates non-selective cation channels. The origins of glutamate receptors are not well understood as they differ structurally and functionally from simple bacterial ligand-gated ion channels. Here we report the discovery of an ionotropic glutamate receptor that combines the typical eukaryotic domain architecture with the 'TXVGYG' signature sequence of the selectivity filter found in K+ channels. This receptor exhibits functional properties intermediate between bacterial and eukaryotic glutamate-gated ion channels, suggesting a link in the evolution of ionotropic glutamate receptors."}],"date_created":"2018-12-11T12:03:09Z","title":"Modern ionotropic glutamate receptor with a K+ selectivity signature sequence","language":[{"iso":"eng"}],"file_date_updated":"2020-07-14T12:46:12Z","volume":2,"file":[{"file_id":"4891","file_name":"IST-2017-832-v1+1_janovjak.pdf","date_created":"2018-12-12T10:11:36Z","relation":"main_file","date_updated":"2020-07-14T12:46:12Z","creator":"system","access_level":"open_access","file_size":387654,"checksum":"6b68d65aadd97c18d663eb117a0a9d35","content_type":"application/pdf"}],"oa_version":"Submitted Version","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","corr_author":"1","has_accepted_license":"1","status":"public","issue":"232","year":"2011","publisher":"Nature Publishing Group","date_published":"2011-03-08T00:00:00Z","month":"03","publication_status":"published","date_updated":"2025-09-30T08:40:22Z","article_processing_charge":"No","department":[{"_id":"HaJa"}],"oa":1},{"date_updated":"2021-01-12T07:43:17Z","extern":"1","publication_status":"published","month":"10","article_type":"original","date_published":"2011-10-07T00:00:00Z","publisher":"Royal Society of Chemistry (RSC) ","volume":47,"language":[{"iso":"eng"}],"title":"Morphology evolution of Cu2−xS nanoparticles: from spheres to dodecahedrons","date_created":"2018-12-11T11:45:55Z","article_processing_charge":"No","abstract":[{"text":"An oriented attachment and growth mechanism allows an accurate control of the size and morphology of Cu2-xS nanocrystals, from spheres and disks to tetradecahedrons and dodecahedrons. The synthesis conditions and the growth mechanism are detailed here.","lang":"eng"}],"day":"07","publist_id":"7491","type":"journal_article","publication":"Chemical Communications","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"        47","oa_version":"None","acknowledgement":"This work was supported by the Spanish MICINN projects\r\nMAT2008-05779, MAT2008-03400-E/MAT, ENE2008-03277-E/\r\nCON, MAT2010-15138, MAT-2010-21510, CDS2009-00050 and\r\nCSD2009-00013 and by Generalitat de Catalunya 2009-SGR-770\r\nand XaRMAE.","citation":{"short":"W. Li, A. Shavel, R. Guzman, J. Rubio Garcia, C. Flox, J. Fan, D. Cadavid, M. Ibáñez, J. Arbiol, J. Morante, A. Cabot, Chemical Communications 47 (2011) 10332–10334.","chicago":"Li, Wenhua, Alexey Shavel, Roger Guzman, Javier Rubio Garcia, Cristina Flox, Jiandong Fan, Doris Cadavid, et al. “Morphology Evolution of Cu2−xS Nanoparticles: From Spheres to Dodecahedrons.” <i>Chemical Communications</i>. Royal Society of Chemistry (RSC) , 2011. <a href=\"https://doi.org/10.1039/c1cc13803k\">https://doi.org/10.1039/c1cc13803k</a>.","ista":"Li W, Shavel A, Guzman R, Rubio Garcia J, Flox C, Fan J, Cadavid D, Ibáñez M, Arbiol J, Morante J, Cabot A. 2011. Morphology evolution of Cu2−xS nanoparticles: from spheres to dodecahedrons. Chemical Communications. 47(37), 10332–10334.","ama":"Li W, Shavel A, Guzman R, et al. Morphology evolution of Cu2−xS nanoparticles: from spheres to dodecahedrons. <i>Chemical Communications</i>. 2011;47(37):10332-10334. doi:<a href=\"https://doi.org/10.1039/c1cc13803k\">10.1039/c1cc13803k</a>","apa":"Li, W., Shavel, A., Guzman, R., Rubio Garcia, J., Flox, C., Fan, J., … Cabot, A. (2011). Morphology evolution of Cu2−xS nanoparticles: from spheres to dodecahedrons. <i>Chemical Communications</i>. Royal Society of Chemistry (RSC) . <a href=\"https://doi.org/10.1039/c1cc13803k\">https://doi.org/10.1039/c1cc13803k</a>","ieee":"W. Li <i>et al.</i>, “Morphology evolution of Cu2−xS nanoparticles: from spheres to dodecahedrons,” <i>Chemical Communications</i>, vol. 47, no. 37. Royal Society of Chemistry (RSC) , pp. 10332–10334, 2011.","mla":"Li, Wenhua, et al. “Morphology Evolution of Cu2−xS Nanoparticles: From Spheres to Dodecahedrons.” <i>Chemical Communications</i>, vol. 47, no. 37, Royal Society of Chemistry (RSC) , 2011, pp. 10332–34, doi:<a href=\"https://doi.org/10.1039/c1cc13803k\">10.1039/c1cc13803k</a>."},"author":[{"last_name":"Li","first_name":"Wenhua","full_name":"Li, Wenhua"},{"last_name":"Shavel","first_name":"Alexey","full_name":"Shavel, Alexey"},{"last_name":"Guzman","full_name":"Guzman, Roger","first_name":"Roger"},{"full_name":"Rubio Garcia, Javier","first_name":"Javier","last_name":"Rubio Garcia"},{"last_name":"Flox","first_name":"Cristina","full_name":"Flox, Cristina"},{"full_name":"Fan, Jiandong","first_name":"Jiandong","last_name":"Fan"},{"full_name":"Cadavid, Doris","first_name":"Doris","last_name":"Cadavid"},{"first_name":"Maria","full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843","last_name":"Ibáñez"},{"last_name":"Arbiol","first_name":"Jordi","full_name":"Arbiol, Jordi"},{"first_name":"Joan","full_name":"Morante, Joan","last_name":"Morante"},{"first_name":"Andreu","full_name":"Cabot, Andreu","last_name":"Cabot"}],"issue":"37","status":"public","year":"2011","page":"10332 - 10334","quality_controlled":"1","_id":"341","doi":"10.1039/c1cc13803k"},{"oa_version":"None","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","issue":"2","year":"2011","status":"public","publisher":"Nature Publishing Group","month":"01","date_published":"2011-01-23T00:00:00Z","date_updated":"2025-09-30T08:39:51Z","publication_status":"published","department":[{"_id":"ToBo"}],"article_processing_charge":"No","intvolume":"        13","acknowledgement":"This work was supported by the Beckman Institute and Biological Imaging Center at the California Institute of Technology and by the NHGRI Center of Excellence in Genomic Science grant P50HG004071.","citation":{"ieee":"N. Plachta, M. T. Bollenbach, S. Pease, S. Fraser, and P. Pantazis, “Oct4 kinetics predict cell lineage patterning in the early mammalian embryo,” <i>Nature Cell Biology</i>, vol. 13, no. 2. Nature Publishing Group, pp. 117–123, 2011.","mla":"Plachta, Nicolas, et al. “Oct4 Kinetics Predict Cell Lineage Patterning in the Early Mammalian Embryo.” <i>Nature Cell Biology</i>, vol. 13, no. 2, Nature Publishing Group, 2011, pp. 117–23, doi:<a href=\"https://doi.org/10.1038/ncb2154\">10.1038/ncb2154</a>.","ama":"Plachta N, Bollenbach MT, Pease S, Fraser S, Pantazis P. Oct4 kinetics predict cell lineage patterning in the early mammalian embryo. <i>Nature Cell Biology</i>. 2011;13(2):117-123. doi:<a href=\"https://doi.org/10.1038/ncb2154\">10.1038/ncb2154</a>","apa":"Plachta, N., Bollenbach, M. T., Pease, S., Fraser, S., &#38; Pantazis, P. (2011). Oct4 kinetics predict cell lineage patterning in the early mammalian embryo. <i>Nature Cell Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncb2154\">https://doi.org/10.1038/ncb2154</a>","ista":"Plachta N, Bollenbach MT, Pease S, Fraser S, Pantazis P. 2011. Oct4 kinetics predict cell lineage patterning in the early mammalian embryo. Nature Cell Biology. 13(2), 117–123.","short":"N. Plachta, M.T. Bollenbach, S. Pease, S. Fraser, P. Pantazis, Nature Cell Biology 13 (2011) 117–123.","chicago":"Plachta, Nicolas, Mark Tobias Bollenbach, Shirley Pease, Scott Fraser, and Periklis Pantazis. “Oct4 Kinetics Predict Cell Lineage Patterning in the Early Mammalian Embryo.” <i>Nature Cell Biology</i>. Nature Publishing Group, 2011. <a href=\"https://doi.org/10.1038/ncb2154\">https://doi.org/10.1038/ncb2154</a>."},"external_id":{"isi":["000286805900004"]},"publist_id":"2971","publication":"Nature Cell Biology","type":"journal_article","doi":"10.1038/ncb2154","_id":"3429","page":"117 - 123","author":[{"first_name":"Nicolas","full_name":"Plachta, Nicolas","last_name":"Plachta"},{"first_name":"Mark Tobias","full_name":"Bollenbach, Mark Tobias","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-4398-476X","last_name":"Bollenbach"},{"full_name":"Pease, Shirley","first_name":"Shirley","last_name":"Pease"},{"last_name":"Fraser","first_name":"Scott","full_name":"Fraser, Scott"},{"full_name":"Pantazis, Periklis","first_name":"Periklis","last_name":"Pantazis"}],"isi":1,"scopus_import":"1","day":"23","abstract":[{"lang":"eng","text":"Transcription factors are central to sustaining pluripotency, yet little is known about transcription factor dynamics in defining pluripotency in the early mammalian embryo. Here, we establish a fluorescence decay after photoactivation (FDAP) assay to quantitatively study the kinetic behaviour of Oct4, a key transcription factor controlling pre-implantation development in the mouse embryo. FDAP measurements reveal that each cell in a developing embryo shows one of two distinct Oct4 kinetics, before there are any morphologically distinguishable differences or outward signs of lineage patterning. The differences revealed by FDAP are due to differences in the accessibility of Oct4 to its DNA binding sites in the nucleus. Lineage tracing of the cells in the two distinct sub-populations demonstrates that the Oct4 kinetics predict lineages of the early embryo. Cells with slower Oct4 kinetics are more likely to give rise to the pluripotent cell lineage that contributes to the inner cell mass. Those with faster Oct4 kinetics contribute mostly to the extra-embryonic lineage. Our findings identify Oct4 kinetics, rather than differences in total transcription factor expression levels, as a predictive measure of developmental cell lineage patterning in the early mouse embryo."}],"date_created":"2018-12-11T12:03:17Z","volume":13,"title":"Oct4 kinetics predict cell lineage patterning in the early mammalian embryo","language":[{"iso":"eng"}]},{"year":"2011","status":"public","corr_author":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","alternative_title":["Methods in Molecular Biology"],"oa":1,"article_processing_charge":"No","department":[{"_id":"MiSi"}],"date_updated":"2026-06-18T18:46:10Z","publication_status":"published","month":"05","article_type":"original","date_published":"2011-05-17T00:00:00Z","publisher":"Springer","quality_controlled":"1","author":[{"orcid":"0000-0002-6620-9179","last_name":"Sixt","first_name":"Michael K","full_name":"Sixt, Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Tim","full_name":"Lämmermann, Tim","last_name":"Lämmermann"}],"page":"149 - 165","_id":"3505","doi":"10.1007/978-1-61779-207-6_11","publication":"Cell Migration","publist_id":"2882","type":"journal_article","ddc":["570"],"citation":{"ista":"Sixt MK, Lämmermann T. 2011. In vitro analysis of chemotactic leukocyte migration in 3D environments. Cell Migration. 769, 149–165.","chicago":"Sixt, Michael K, and Tim Lämmermann. “In Vitro Analysis of Chemotactic Leukocyte Migration in 3D Environments.” <i>Cell Migration</i>. Springer, 2011. <a href=\"https://doi.org/10.1007/978-1-61779-207-6_11\">https://doi.org/10.1007/978-1-61779-207-6_11</a>.","short":"M.K. Sixt, T. Lämmermann, Cell Migration 769 (2011) 149–165.","mla":"Sixt, Michael K., and Tim Lämmermann. “In Vitro Analysis of Chemotactic Leukocyte Migration in 3D Environments.” <i>Cell Migration</i>, vol. 769, Springer, 2011, pp. 149–65, doi:<a href=\"https://doi.org/10.1007/978-1-61779-207-6_11\">10.1007/978-1-61779-207-6_11</a>.","ieee":"M. K. Sixt and T. Lämmermann, “In vitro analysis of chemotactic leukocyte migration in 3D environments,” <i>Cell Migration</i>, vol. 769. Springer, pp. 149–165, 2011.","apa":"Sixt, M. K., &#38; Lämmermann, T. (2011). In vitro analysis of chemotactic leukocyte migration in 3D environments. <i>Cell Migration</i>. Springer. <a href=\"https://doi.org/10.1007/978-1-61779-207-6_11\">https://doi.org/10.1007/978-1-61779-207-6_11</a>","ama":"Sixt MK, Lämmermann T. In vitro analysis of chemotactic leukocyte migration in 3D environments. <i>Cell Migration</i>. 2011;769:149-165. doi:<a href=\"https://doi.org/10.1007/978-1-61779-207-6_11\">10.1007/978-1-61779-207-6_11</a>"},"intvolume":"       769","main_file_link":[{"url":"https://pure.mpg.de/pubman/item/item_3219628_1/component/file_3219630/Sixt%20et%20al..pdf","open_access":"1"}],"language":[{"iso":"eng"}],"title":"In vitro analysis of chemotactic leukocyte migration in 3D environments","volume":769,"date_created":"2018-12-11T12:03:41Z","day":"17","abstract":[{"lang":"eng","text":"Cell migration on two-dimensional (2D) substrates follows entirely different rules than cell migration in three-dimensional (3D) environments. This is especially relevant for leukocytes that are able to migrate in the absence of adhesion receptors within the confined geometry of artificial 3D extracellular matrix scaffolds and within the interstitial space in vivo. Here, we describe in detail a simple and economical protocol to visualize dendritic cell migration in 3D collagen scaffolds along chemotactic gradients. This method can be adapted to other cell types and may serve as a physiologically relevant paradigm for the directed locomotion of most amoeboid cells."}],"scopus_import":"1"},{"extern":1,"publication_status":"published","date_updated":"2021-01-12T07:51:45Z","month":"03","date_published":"2011-03-16T00:00:00Z","publisher":"Springer","title":"Structure-based design of light-controlled proteins","volume":55,"date_created":"2018-12-11T12:04:49Z","abstract":[{"text":"Small photochromic molecules are widespread in nature and serve as switches for a plethora of light-controlled processes. In a typical photoreceptor, the different geometries and polarities of the photochrome isomers are tightly coupled to functionally relevant conformational changes in the proteins. The past decade has seen extensive efforts to mimic nature and create proteins controlled by synthetic photochromes in the laboratory. Here, we discuss the role of molecular modeling to gain a structural understanding of photochromes and to design light-controlled peptides and proteins. We address several fundamental questions: What are the molecular structures of photochromes, particularly for metastable isomers that cannot be addressed experimentally? How are the structures of bistable photoisomers coupled to the conformational states of peptides and proteins? Can we design light-controlled proteins rapidly and reliably? After an introduction to the principles of molecular modeling, we answer these questions by examining systems that range from the size of isolated photochromes, to that of peptides and large cell surface receptors, each from its unique computational perspective.","lang":"eng"}],"day":"16","publist_id":"2504","publication":"Photosensitive Molecules for the Control of Biological Function","type":"book_chapter","citation":{"short":"H.L. Janovjak, E. Isacoff, in:, Photosensitive Molecules for the Control of Biological Function, Springer, 2011, pp. 233–266.","chicago":"Janovjak, Harald L, and Ehud Isacoff. “Structure-Based Design of Light-Controlled Proteins.” In <i>Photosensitive Molecules for the Control of Biological Function</i>, 55:233–66. Springer, 2011. <a href=\"https://doi.org/10.1007/978-1-61779-031-7_13\">https://doi.org/10.1007/978-1-61779-031-7_13</a>.","ista":"Janovjak HL, Isacoff E. 2011.Structure-based design of light-controlled proteins. In: Photosensitive Molecules for the Control of Biological Function. vol. 55, 233–266.","ama":"Janovjak HL, Isacoff E. Structure-based design of light-controlled proteins. In: <i>Photosensitive Molecules for the Control of Biological Function</i>. Vol 55. Springer; 2011:233-266. doi:<a href=\"https://doi.org/10.1007/978-1-61779-031-7_13\">10.1007/978-1-61779-031-7_13</a>","apa":"Janovjak, H. L., &#38; Isacoff, E. (2011). Structure-based design of light-controlled proteins. In <i>Photosensitive Molecules for the Control of Biological Function</i> (Vol. 55, pp. 233–266). Springer. <a href=\"https://doi.org/10.1007/978-1-61779-031-7_13\">https://doi.org/10.1007/978-1-61779-031-7_13</a>","ieee":"H. L. Janovjak and E. Isacoff, “Structure-based design of light-controlled proteins,” in <i>Photosensitive Molecules for the Control of Biological Function</i>, vol. 55, Springer, 2011, pp. 233–266.","mla":"Janovjak, Harald L., and Ehud Isacoff. “Structure-Based Design of Light-Controlled Proteins.” <i>Photosensitive Molecules for the Control of Biological Function</i>, vol. 55, Springer, 2011, pp. 233–66, doi:<a href=\"https://doi.org/10.1007/978-1-61779-031-7_13\">10.1007/978-1-61779-031-7_13</a>."},"intvolume":"        55","quality_controlled":0,"author":[{"id":"33BA6C30-F248-11E8-B48F-1D18A9856A87","full_name":"Harald Janovjak","first_name":"Harald L","last_name":"Janovjak","orcid":"0000-0002-8023-9315"},{"last_name":"Isacoff","first_name":"Ehud","full_name":"Isacoff, Ehud Y"}],"year":"2011","page":"233 - 266","status":"public","_id":"3724","doi":"10.1007/978-1-61779-031-7_13"},{"citation":{"short":"C. Hollatz, S. Vilaça, R.A. Fernandes Redondo, M. Marmontel, C. Baker, F. Santos, Biological Journal of the Linnean Society 102 (2011) 812–827.","chicago":"Hollatz, Claudia, Sibelle Vilaça, Rodrigo A Fernandes Redondo, Míriam Marmontel, Cyndi Baker, and Fabrício Santos. “The Amazon River System as an Ecological Barrier Driving Genetic Differentiation of the Pink Dolphin (Inia Geoffrensis).” <i>Biological Journal of the Linnean Society</i>. Wiley, 2011. <a href=\"https://doi.org/10.1111/j.1095-8312.2011.01616.x\">https://doi.org/10.1111/j.1095-8312.2011.01616.x</a>.","ista":"Hollatz C, Vilaça S, Fernandes Redondo RA, Marmontel M, Baker C, Santos F. 2011. The Amazon River system as an ecological barrier driving genetic differentiation of the pink dolphin (Inia geoffrensis). Biological Journal of the Linnean Society. 102(4), 812–827.","ama":"Hollatz C, Vilaça S, Fernandes Redondo RA, Marmontel M, Baker C, Santos F. The Amazon River system as an ecological barrier driving genetic differentiation of the pink dolphin (Inia geoffrensis). <i>Biological Journal of the Linnean Society</i>. 2011;102(4):812-827. doi:<a href=\"https://doi.org/10.1111/j.1095-8312.2011.01616.x\">10.1111/j.1095-8312.2011.01616.x</a>","apa":"Hollatz, C., Vilaça, S., Fernandes Redondo, R. A., Marmontel, M., Baker, C., &#38; Santos, F. (2011). The Amazon River system as an ecological barrier driving genetic differentiation of the pink dolphin (Inia geoffrensis). <i>Biological Journal of the Linnean Society</i>. Wiley. <a href=\"https://doi.org/10.1111/j.1095-8312.2011.01616.x\">https://doi.org/10.1111/j.1095-8312.2011.01616.x</a>","ieee":"C. Hollatz, S. Vilaça, R. A. Fernandes Redondo, M. Marmontel, C. Baker, and F. Santos, “The Amazon River system as an ecological barrier driving genetic differentiation of the pink dolphin (Inia geoffrensis),” <i>Biological Journal of the Linnean Society</i>, vol. 102, no. 4. Wiley, pp. 812–827, 2011.","mla":"Hollatz, Claudia, et al. “The Amazon River System as an Ecological Barrier Driving Genetic Differentiation of the Pink Dolphin (Inia Geoffrensis).” <i>Biological Journal of the Linnean Society</i>, vol. 102, no. 4, Wiley, 2011, pp. 812–27, doi:<a href=\"https://doi.org/10.1111/j.1095-8312.2011.01616.x\">10.1111/j.1095-8312.2011.01616.x</a>."},"oa_version":"None","intvolume":"       102","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publist_id":"2457","publication":"Biological Journal of the Linnean Society","type":"journal_article","doi":"10.1111/j.1095-8312.2011.01616.x","_id":"3770","author":[{"last_name":"Hollatz","full_name":"Hollatz, Claudia","first_name":"Claudia"},{"first_name":"Sibelle","full_name":"Vilaça, Sibelle","last_name":"Vilaça"},{"full_name":"Fernandes Redondo, Rodrigo A","first_name":"Rodrigo A","id":"409D5C96-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5837-2793","last_name":"Fernandes Redondo"},{"last_name":"Marmontel","full_name":"Marmontel, Míriam","first_name":"Míriam"},{"first_name":"Cyndi","full_name":"Baker, Cyndi","last_name":"Baker"},{"last_name":"Santos","full_name":"Santos, Fabrício","first_name":"Fabrício"}],"issue":"4","status":"public","page":"812 - 827","year":"2011","publisher":"Wiley","date_published":"2011-04-01T00:00:00Z","month":"04","extern":"1","date_updated":"2021-01-12T07:52:05Z","publication_status":"published","article_processing_charge":"No","abstract":[{"text":"The pink dolphin (Inia geoffrensis) is widely distributed along the Amazon and Orinoco basins, covering an area of approximately 7 million km2. Previous morphological and genetic studies have proposed the existence of at least two evolutionary significant units: one distributed across the Orinoco and Amazon basins and another confined to the Bolivian Amazon. The presence of barriers in the riverine environment has been suggested to play a significant role in shaping present-day patterns of ecological and genetic structure for this species. In the present study, we examined the phylogeographic structure, lineage divergence time and historical demography using mitochondrial (mt)DNA sequences in different pink dolphin populations distributed in large and small spatial scales, including two neighbouring Brazilian Amazon populations. mtDNA control region (CR) analysis revealed that the Brazilian haplotypes occupy an intermediate position compared to three previously studied geographic locations: the Colombian Amazon, the Colombian Orinoco, and the Bolivian Amazon. On a local scale, we have identified a pattern of maternal isolation between two neighbouring populations from Brazil. Six mtDNA CR haplotypes were identified in Brazil with no sharing between the two populations, as well as specific cytochrome b (cyt b) haplotypes identified in each locality. In addition, we analyzed autosomal microsatellites to investigate male-mediated gene flow and demographic changes within the study area in Brazil. Data analysis of 14 microsatellite loci failed to detect significant population subdivision, suggesting that male-mediated gene flow may maintain homogeneity between these two locations. Moreover, both mtDNA and microsatellite data indicate a major demographic collapse within Brazil in the late Pleistocene. Bayesian skyline plots (BSP) of mtDNA data revealed a stable population for Colombian and Brazilian Amazon lineages through time, whereas a population decline was demonstrated in the Colombian Orinoco lineage. Moreover, BSP and Tajima's D and Fu's Fs tests revealed a recent population expansion exclusively in the Bolivian sample. Finally, we estimated that the diversification of the Inia sp. lineage began in the Late Pliocene (approximately 3.1 Mya) and continued throughout the Pleistocene.","lang":"eng"}],"day":"01","date_created":"2018-12-11T12:05:04Z","title":"The Amazon River system as an ecological barrier driving genetic differentiation of the pink dolphin (Inia geoffrensis)","language":[{"iso":"eng"}],"volume":102},{"oa_version":"None","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","corr_author":"1","status":"public","issue":"3","year":"2011","publisher":"Wiley-Blackwell","date_published":"2011-02-10T00:00:00Z","month":"02","publication_status":"published","date_updated":"2025-09-30T08:39:13Z","department":[{"_id":"FyKo"}],"article_processing_charge":"No","intvolume":"       102","citation":{"short":"A. Pavan, F. Martins, F. Santos, A. Ditchfield, R.A. Fernandes Redondo, Biological Journal of the Linnean Society 102 (2011) 527–539.","chicago":"Pavan, Ana, Felipe Martins, Fabrício Santos, Albert Ditchfield, and Rodrigo A Fernandes Redondo. “Patterns of Diversification in Two Species of Short-Tailed Bats (Carollia Gray, 1838): The Effects of Historical Fragmentation of Brazilian Rainforests.” <i>Biological Journal of the Linnean Society</i>. Wiley-Blackwell, 2011. <a href=\"https://doi.org/10.1111/j.1095-8312.2010.01601.x\">https://doi.org/10.1111/j.1095-8312.2010.01601.x</a>.","ista":"Pavan A, Martins F, Santos F, Ditchfield A, Fernandes Redondo RA. 2011. Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests. Biological Journal of the Linnean Society. 102(3), 527–539.","ama":"Pavan A, Martins F, Santos F, Ditchfield A, Fernandes Redondo RA. Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests. <i>Biological Journal of the Linnean Society</i>. 2011;102(3):527-539. doi:<a href=\"https://doi.org/10.1111/j.1095-8312.2010.01601.x\">10.1111/j.1095-8312.2010.01601.x</a>","apa":"Pavan, A., Martins, F., Santos, F., Ditchfield, A., &#38; Fernandes Redondo, R. A. (2011). Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests. <i>Biological Journal of the Linnean Society</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/j.1095-8312.2010.01601.x\">https://doi.org/10.1111/j.1095-8312.2010.01601.x</a>","ieee":"A. Pavan, F. Martins, F. Santos, A. Ditchfield, and R. A. Fernandes Redondo, “Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests.,” <i>Biological Journal of the Linnean Society</i>, vol. 102, no. 3. Wiley-Blackwell, pp. 527–539, 2011.","mla":"Pavan, Ana, et al. “Patterns of Diversification in Two Species of Short-Tailed Bats (Carollia Gray, 1838): The Effects of Historical Fragmentation of Brazilian Rainforests.” <i>Biological Journal of the Linnean Society</i>, vol. 102, no. 3, Wiley-Blackwell, 2011, pp. 527–39, doi:<a href=\"https://doi.org/10.1111/j.1095-8312.2010.01601.x\">10.1111/j.1095-8312.2010.01601.x</a>."},"external_id":{"isi":["000287193800005"]},"publist_id":"2456","type":"journal_article","publication":"Biological Journal of the Linnean Society","doi":"10.1111/j.1095-8312.2010.01601.x","_id":"3771","page":"527 - 539","author":[{"full_name":"Pavan, Ana","first_name":"Ana","last_name":"Pavan"},{"last_name":"Martins","first_name":"Felipe","full_name":"Martins, Felipe"},{"last_name":"Santos","full_name":"Santos, Fabrício","first_name":"Fabrício"},{"first_name":"Albert","full_name":"Ditchfield, Albert","last_name":"Ditchfield"},{"orcid":"0000-0002-5837-2793","last_name":"Fernandes Redondo","first_name":"Rodrigo A","full_name":"Fernandes Redondo, Rodrigo A","id":"409D5C96-F248-11E8-B48F-1D18A9856A87"}],"quality_controlled":"1","isi":1,"scopus_import":"1","abstract":[{"text":"The small-sized frugivorous bat Carollia perspicillata is an understory specialist and occurs in a wide range of lowland habitats, tending to be more common in tropical dry or moist forests of South and Central America. Its sister species, Carollia brevicauda, occurs almost exclusively in the Amazon rainforest. A recent phylogeographic study proposed a hypothesis of origin and subsequent diversification for C. perspicillata along the Atlantic coastal forest of Brazil. Additionally, it also found two allopatric clades for C. brevicauda separated by the Amazon Basin. We used cytochrome b gene sequences and a more extensive sampling to test hypotheses related to the origin and diversification of C. perspicillata plus C. brevicauda clade in South America. The results obtained indicate that there are two sympatric evolutionary lineages within each species. In C. perspicillata, one lineage is limited to the Southern Atlantic Forest, whereas the other is widely distributed. Coalescent analysis points to a simultaneous origin for C. perspicillata and C. brevicauda, although no place for the diversification of each species can be firmly suggested. The phylogeographic pattern shown by C. perspicillata is also congruent with the Pleistocene refugia hypothesis as a likely vicariant phenomenon shaping the present distribution of its intraspecific lineages.","lang":"eng"}],"day":"10","date_created":"2018-12-11T12:05:05Z","volume":102,"title":"Patterns of diversification in two species of short-tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests.","language":[{"iso":"eng"}]},{"isi":1,"scopus_import":"1","pmid":1,"volume":106,"title":"Estimating linkage disequilibria","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3183869/","open_access":"1"}],"language":[{"iso":"eng"}],"day":"01","date_created":"2018-12-11T12:05:07Z","publist_id":"2449","type":"journal_article","publication":"Heredity","intvolume":"       106","citation":{"ista":"Barton NH. 2011. Estimating linkage disequilibria. Heredity. 106(2), 205–206.","short":"N.H. Barton, Heredity 106 (2011) 205–206.","chicago":"Barton, Nicholas H. “Estimating Linkage Disequilibria.” <i>Heredity</i>. Nature Publishing Group, 2011. <a href=\"https://doi.org/10.1038/hdy.2010.67\">https://doi.org/10.1038/hdy.2010.67</a>.","ieee":"N. H. Barton, “Estimating linkage disequilibria,” <i>Heredity</i>, vol. 106, no. 2. Nature Publishing Group, pp. 205–206, 2011.","mla":"Barton, Nicholas H. “Estimating Linkage Disequilibria.” <i>Heredity</i>, vol. 106, no. 2, Nature Publishing Group, 2011, pp. 205–06, doi:<a href=\"https://doi.org/10.1038/hdy.2010.67\">10.1038/hdy.2010.67</a>.","ama":"Barton NH. Estimating linkage disequilibria. <i>Heredity</i>. 2011;106(2):205-206. doi:<a href=\"https://doi.org/10.1038/hdy.2010.67\">10.1038/hdy.2010.67</a>","apa":"Barton, N. H. (2011). Estimating linkage disequilibria. <i>Heredity</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/hdy.2010.67\">https://doi.org/10.1038/hdy.2010.67</a>"},"external_id":{"isi":["000286375300002"],"pmid":["20502479"]},"page":"205 - 206","author":[{"last_name":"Barton","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H","full_name":"Barton, Nicholas H"}],"doi":"10.1038/hdy.2010.67","_id":"3778","month":"02","date_published":"2011-02-01T00:00:00Z","date_updated":"2025-09-30T08:38:46Z","publication_status":"published","publisher":"Nature Publishing Group","oa":1,"department":[{"_id":"NiBa"}],"article_processing_charge":"No","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","oa_version":"Submitted Version","status":"public","year":"2011","issue":"2","corr_author":"1"},{"date_created":"2018-12-11T12:05:08Z","day":"01","abstract":[{"lang":"eng","text":"We bound the difference in length of two curves in terms of their total curvatures and the Fréchet distance. The bound is independent of the dimension of the ambient Euclidean space, it improves upon a bound by Cohen-Steiner and Edelsbrunner, and it generalizes a result by Fáry and Chakerian."}],"department":[{"_id":"HeEd"}],"language":[{"iso":"eng"}],"title":"The difference in length of curves in R^n","volume":77,"publisher":"Szegedi Tudományegyetem","publication_status":"published","date_updated":"2021-01-12T07:52:09Z","date_published":"2011-01-01T00:00:00Z","month":"01","_id":"3781","quality_controlled":"1","year":"2011","author":[{"last_name":"Fasy","id":"F65D502E-E68D-11E9-9252-C644099818F6","full_name":"Fasy, Brittany Terese","first_name":"Brittany Terese"}],"status":"public","page":"359 - 367","issue":"1-2","oa_version":"None","acknowledgement":"Funded by Graduate Aid in Areas of National Need (GAANN) Fellowship.","citation":{"ama":"Fasy BT. The difference in length of curves in R^n. <i>Acta Sci Math (Szeged)</i>. 2011;77(1-2):359-367.","apa":"Fasy, B. T. (2011). The difference in length of curves in R^n. <i>Acta Sci. Math. (Szeged)</i>. Szegedi Tudományegyetem.","ieee":"B. T. Fasy, “The difference in length of curves in R^n,” <i>Acta Sci. Math. (Szeged)</i>, vol. 77, no. 1–2. Szegedi Tudományegyetem, pp. 359–367, 2011.","mla":"Fasy, Brittany Terese. “The Difference in Length of Curves in R^n.” <i>Acta Sci. Math. (Szeged)</i>, vol. 77, no. 1–2, Szegedi Tudományegyetem, 2011, pp. 359–67.","short":"B.T. Fasy, Acta Sci. Math. (Szeged) 77 (2011) 359–367.","chicago":"Fasy, Brittany Terese. “The Difference in Length of Curves in R^n.” <i>Acta Sci. Math. (Szeged)</i>. Szegedi Tudományegyetem, 2011.","ista":"Fasy BT. 2011. The difference in length of curves in R^n. Acta Sci. Math. (Szeged). 77(1–2), 359–367."},"intvolume":"        77","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publist_id":"2446","type":"journal_article","publication":"Acta Sci. Math. (Szeged)"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","issue":"2","status":"public","year":"2011","corr_author":"1","article_type":"original","month":"03","date_published":"2011-03-01T00:00:00Z","date_updated":"2026-06-18T18:46:40Z","publication_status":"published","publisher":"Cambridge University Press","oa":1,"article_processing_charge":"No","department":[{"_id":"NiBa"}],"type":"journal_article","publist_id":"2443","publication":"Journal of the Marine Biological Association of the United Kingdom","citation":{"apa":"Palero, F., Guerao, G., Clark, P., &#38; Abello, P. (2011). Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. <i>Journal of the Marine Biological Association of the United Kingdom</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/S0025315410000287\">https://doi.org/10.1017/S0025315410000287</a>","ama":"Palero F, Guerao G, Clark P, Abello P. Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. <i>Journal of the Marine Biological Association of the United Kingdom</i>. 2011;91(2):485-492. doi:<a href=\"https://doi.org/10.1017/S0025315410000287\">10.1017/S0025315410000287</a>","mla":"Palero, Ferran, et al. “Scyllarus Arctus (Crustacea: Decapoda: Scyllaridae) Final Stage Phyllosoma Identified by DNA Analysis, with Morphological Description.” <i>Journal of the Marine Biological Association of the United Kingdom</i>, vol. 91, no. 2, Cambridge University Press, 2011, pp. 485–92, doi:<a href=\"https://doi.org/10.1017/S0025315410000287\">10.1017/S0025315410000287</a>.","ieee":"F. Palero, G. Guerao, P. Clark, and P. Abello, “Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description,” <i>Journal of the Marine Biological Association of the United Kingdom</i>, vol. 91, no. 2. Cambridge University Press, pp. 485–492, 2011.","chicago":"Palero, Ferran, Guillermo Guerao, Paul Clark, and Pere Abello. “Scyllarus Arctus (Crustacea: Decapoda: Scyllaridae) Final Stage Phyllosoma Identified by DNA Analysis, with Morphological Description.” <i>Journal of the Marine Biological Association of the United Kingdom</i>. Cambridge University Press, 2011. <a href=\"https://doi.org/10.1017/S0025315410000287\">https://doi.org/10.1017/S0025315410000287</a>.","short":"F. Palero, G. Guerao, P. Clark, P. Abello, Journal of the Marine Biological Association of the United Kingdom 91 (2011) 485–492.","ista":"Palero F, Guerao G, Clark P, Abello P. 2011. Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. 91(2), 485–492."},"ddc":["570"],"external_id":{"isi":["000287940400022"]},"intvolume":"        91","quality_controlled":"1","page":"485 - 492","author":[{"id":"3F0E2A22-F248-11E8-B48F-1D18A9856A87","full_name":"Palero, Ferran","first_name":"Ferran","last_name":"Palero","orcid":"0000-0002-0343-8329"},{"last_name":"Guerao","first_name":"Guillermo","full_name":"Guerao, Guillermo"},{"last_name":"Clark","first_name":"Paul","full_name":"Clark, Paul"},{"last_name":"Abello","first_name":"Pere","full_name":"Abello, Pere"}],"doi":"10.1017/S0025315410000287","_id":"3784","scopus_import":"1","isi":1,"title":"Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description","main_file_link":[{"url":"https://digital.csic.es/bitstream/10261/32783/3/Palero_et_al_2011.pdf","open_access":"1"}],"language":[{"iso":"eng"}],"volume":91,"abstract":[{"lang":"eng","text":"Advanced stages of Scyllarus phyllosoma larvae were collected by demersal trawling during fishery research surveys in the western Mediterranean Sea in 2003–2005. Nucleotide sequence analysis of the mitochondrial 16S rDNA gene allowed the final-stage phyllosoma of Scyllarus arctus to be identified among these larvae. Its morphology is described and illustrated. This constitutes the second complete description of a Scyllaridae phyllosoma with its specific identity being validated by molecular techniques (the first was S. pygmaeus). These results also solved a long lasting taxonomic anomaly of several species assigned to the ancient genus Phyllosoma Leach, 1814. Detailed examination indicated that the final-stage phyllosoma of S. arctus shows closer affinities with the American scyllarid Scyllarus depressus or with the Australian Scyllarus sp. b (sensu Phillips et al., 1981) than to its sympatric species S. pygmaeus."}],"day":"01","date_created":"2018-12-11T12:05:09Z"},{"quality_controlled":"1","page":"189 - 213","author":[{"id":"2B819732-F248-11E8-B48F-1D18A9856A87","full_name":"Krens, Gabriel","first_name":"Gabriel","last_name":"Krens","orcid":"0000-0003-4761-5996"},{"id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J","full_name":"Heisenberg, Carl-Philipp J","last_name":"Heisenberg","orcid":"0000-0002-0912-4566"}],"doi":"10.1016/B978-0-12-385065-2.00006-2","_id":"3791","publication":"Forces and Tension in Development","type":"book_chapter","publist_id":"2436","citation":{"ista":"Krens G, Heisenberg C-PJ. 2011.Cell sorting in development. In: Forces and Tension in Development. Current Topics in Developmental Biology, vol. 95, 189–213.","chicago":"Krens, Gabriel, and Carl-Philipp J Heisenberg. “Cell Sorting in Development.” In <i>Forces and Tension in Development</i>, edited by Michel Labouesse, 95:189–213. Elsevier, 2011. <a href=\"https://doi.org/10.1016/B978-0-12-385065-2.00006-2\">https://doi.org/10.1016/B978-0-12-385065-2.00006-2</a>.","short":"G. Krens, C.-P.J. Heisenberg, in:, M. Labouesse (Ed.), Forces and Tension in Development, Elsevier, 2011, pp. 189–213.","mla":"Krens, Gabriel, and Carl-Philipp J. Heisenberg. “Cell Sorting in Development.” <i>Forces and Tension in Development</i>, edited by Michel Labouesse, vol. 95, Elsevier, 2011, pp. 189–213, doi:<a href=\"https://doi.org/10.1016/B978-0-12-385065-2.00006-2\">10.1016/B978-0-12-385065-2.00006-2</a>.","ieee":"G. Krens and C.-P. J. Heisenberg, “Cell sorting in development,” in <i>Forces and Tension in Development</i>, vol. 95, M. Labouesse, Ed. Elsevier, 2011, pp. 189–213.","apa":"Krens, G., &#38; Heisenberg, C.-P. J. (2011). Cell sorting in development. In M. Labouesse (Ed.), <i>Forces and Tension in Development</i> (Vol. 95, pp. 189–213). Elsevier. <a href=\"https://doi.org/10.1016/B978-0-12-385065-2.00006-2\">https://doi.org/10.1016/B978-0-12-385065-2.00006-2</a>","ama":"Krens G, Heisenberg C-PJ. Cell sorting in development. In: Labouesse M, ed. <i>Forces and Tension in Development</i>. Vol 95. Elsevier; 2011:189-213. doi:<a href=\"https://doi.org/10.1016/B978-0-12-385065-2.00006-2\">10.1016/B978-0-12-385065-2.00006-2</a>"},"external_id":{"isi":["000290454200007"]},"intvolume":"        95","title":"Cell sorting in development","language":[{"iso":"eng"}],"volume":95,"day":"01","abstract":[{"text":"During the development of multicellular organisms, cell fate specification is followed by the sorting of different cell types into distinct domains from where the different tissues and organs are formed. Cell sorting involves both the segregation of a mixed population of cells with different fates and properties into distinct domains, and the active maintenance of their segregated state. Because of its biological importance and apparent resemblance to fluid segregation in physics, cell sorting was extensively studied by both biologists and physicists over the last decades. Different theories were developed that try to explain cell sorting on the basis of the physical properties of the constituent cells. However, only recently the molecular and cellular mechanisms that control the physical properties driving cell sorting, have begun to be unraveled. In this review, we will provide an overview of different cell-sorting processes in development and discuss how these processes can be explained by the different sorting theories, and how these theories in turn can be connected to the molecular and cellular mechanisms driving these processes.","lang":"eng"}],"date_created":"2018-12-11T12:05:11Z","scopus_import":"1","isi":1,"status":"public","year":"2011","editor":[{"first_name":"Michel","full_name":"Labouesse, Michel","last_name":"Labouesse"}],"corr_author":"1","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","alternative_title":["Current Topics in Developmental Biology"],"oa_version":"None","article_processing_charge":"No","department":[{"_id":"CaHe"}],"date_published":"2011-01-01T00:00:00Z","month":"01","publication_status":"published","date_updated":"2025-09-30T08:37:44Z","publisher":"Elsevier"},{"oa":1,"department":[{"_id":"HeEd"}],"publication_status":"published","date_updated":"2024-10-21T06:03:02Z","date_published":"2011-05-03T00:00:00Z","month":"05","publisher":"Springer","year":"2011","status":"public","editor":[{"full_name":"Calude, Cristian","first_name":"Cristian","last_name":"Calude"},{"first_name":"Grzegorz","full_name":"Rozenberg, Grzegorz","last_name":"Rozenberg"},{"full_name":"Salomaa, Arto","first_name":"Arto","last_name":"Salomaa"}],"corr_author":"1","has_accepted_license":"1","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","oa_version":"Submitted Version","file":[{"date_created":"2018-12-12T10:07:42Z","file_name":"IST-2016-539-v1+1_2011-B-01-CoveringPacking.pdf","relation":"main_file","file_id":"4640","content_type":"application/pdf","checksum":"aaf22b4d7bd4277ffe8db532119cf474","access_level":"open_access","file_size":436875,"creator":"system","date_updated":"2020-07-14T12:46:16Z"}],"alternative_title":["LNCS"],"language":[{"iso":"eng"}],"series_title":"Dedicated to Hermann Maurer on the Occasion of His 70th Birthday","title":"Covering and packing with spheres by diagonal distortion in R^n","volume":6570,"file_date_updated":"2020-07-14T12:46:16Z","date_created":"2018-12-11T12:05:13Z","abstract":[{"text":"We address the problem of covering ℝ n with congruent balls, while minimizing the number of balls that contain an average point. Considering the 1-parameter family of lattices defined by stretching or compressing the integer grid in diagonal direction, we give a closed formula for the covering density that depends on the distortion parameter. We observe that our family contains the thinnest lattice coverings in dimensions 2 to 5. We also consider the problem of packing congruent balls in ℝ n , for which we give a closed formula for the packing density as well. Again we observe that our family contains optimal configurations, this time densest packings in dimensions 2 and 3.","lang":"eng"}],"day":"03","scopus_import":"1","pubrep_id":"539","quality_controlled":"1","page":"20 - 35","author":[{"id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","first_name":"Herbert","full_name":"Edelsbrunner, Herbert","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833"},{"last_name":"Kerber","orcid":"0000-0002-8030-9299","id":"36E4574A-F248-11E8-B48F-1D18A9856A87","first_name":"Michael","full_name":"Kerber, Michael"}],"_id":"3796","doi":"10.1007/978-3-642-19391-0_2","publication":"Rainbow of Computer Science","type":"book_chapter","publist_id":"2427","ddc":["000"],"citation":{"ista":"Edelsbrunner H, Kerber M. 2011.Covering and packing with spheres by diagonal distortion in R^n. In: Rainbow of Computer Science. LNCS, vol. 6570, 20–35.","short":"H. Edelsbrunner, M. Kerber, in:, C. Calude, G. Rozenberg, A. Salomaa (Eds.), Rainbow of Computer Science, Springer, 2011, pp. 20–35.","chicago":"Edelsbrunner, Herbert, and Michael Kerber. “Covering and Packing with Spheres by Diagonal Distortion in R^n.” In <i>Rainbow of Computer Science</i>, edited by Cristian Calude, Grzegorz Rozenberg, and Arto Salomaa, 6570:20–35. Dedicated to Hermann Maurer on the Occasion of His 70th Birthday. Springer, 2011. <a href=\"https://doi.org/10.1007/978-3-642-19391-0_2\">https://doi.org/10.1007/978-3-642-19391-0_2</a>.","ieee":"H. Edelsbrunner and M. Kerber, “Covering and packing with spheres by diagonal distortion in R^n,” in <i>Rainbow of Computer Science</i>, vol. 6570, C. Calude, G. Rozenberg, and A. Salomaa, Eds. Springer, 2011, pp. 20–35.","mla":"Edelsbrunner, Herbert, and Michael Kerber. “Covering and Packing with Spheres by Diagonal Distortion in R^n.” <i>Rainbow of Computer Science</i>, edited by Cristian Calude et al., vol. 6570, Springer, 2011, pp. 20–35, doi:<a href=\"https://doi.org/10.1007/978-3-642-19391-0_2\">10.1007/978-3-642-19391-0_2</a>.","ama":"Edelsbrunner H, Kerber M. Covering and packing with spheres by diagonal distortion in R^n. In: Calude C, Rozenberg G, Salomaa A, eds. <i>Rainbow of Computer Science</i>. Vol 6570. Dedicated to Hermann Maurer on the Occasion of His 70th Birthday. Springer; 2011:20-35. doi:<a href=\"https://doi.org/10.1007/978-3-642-19391-0_2\">10.1007/978-3-642-19391-0_2</a>","apa":"Edelsbrunner, H., &#38; Kerber, M. (2011). Covering and packing with spheres by diagonal distortion in R^n. In C. Calude, G. Rozenberg, &#38; A. Salomaa (Eds.), <i>Rainbow of Computer Science</i> (Vol. 6570, pp. 20–35). Springer. <a href=\"https://doi.org/10.1007/978-3-642-19391-0_2\">https://doi.org/10.1007/978-3-642-19391-0_2</a>"},"intvolume":"      6570"},{"oa":1,"article_processing_charge":"No","month":"07","article_type":"original","date_published":"2011-07-21T00:00:00Z","date_updated":"2021-01-12T07:52:44Z","publication_status":"published","publisher":"American Physical Society","issue":"4","year":"2011","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","volume":84,"title":"STM imaging of a bound state along a step on the surface of the topological insulator Bi2Te3","main_file_link":[{"url":"https://arxiv.org/abs/1003.2233","open_access":"1"}],"language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"We present a detailed study of the local density of states (LDOS) associated with the surface-state band near a step edge of the strong topological insulator Bi2Te3 and reveal a one-dimensional bound state that runs parallel to the step edge and is bound to it at some characteristic distance. This bound state is clearly observed in the bulk gap region, while it becomes entangled with the oscillations of the warped surface band at high energy, and with the valence-band states near the Dirac point. We obtain excellent fits to theoretical predictions [Alpichshev, 2011] that properly incorporate the three-dimensional nature of the problem to the surface state. Fitting the data at different energies, we can recalculate the LDOS originating from the Dirac band without the contribution of the bulk bands or incoherent tunneling effects. "}],"day":"21","date_created":"2018-12-11T11:46:10Z","extern":"1","author":[{"id":"45E67A2A-F248-11E8-B48F-1D18A9856A87","full_name":"Alpichshev, Zhanybek","first_name":"Zhanybek","last_name":"Alpichshev","orcid":"0000-0002-7183-5203"},{"last_name":"Analytis","full_name":"Analytis, J G","first_name":"J G"},{"last_name":"Chu","full_name":"Chu, J H","first_name":"J H"},{"last_name":"Fisher","first_name":"I R","full_name":"Fisher, I R"},{"last_name":"Kapitulnik","first_name":"A","full_name":"Kapitulnik, A"}],"quality_controlled":"1","doi":"10.1103/PhysRevB.84.041104","_id":"386","publist_id":"7443","publication":"Physical Review B - Condensed Matter and Materials Physics","type":"journal_article","arxiv":1,"intvolume":"        84","citation":{"ieee":"Z. Alpichshev, J. G. Analytis, J. H. Chu, I. R. Fisher, and A. Kapitulnik, “STM imaging of a bound state along a step on the surface of the topological insulator Bi2Te3,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 84, no. 4. American Physical Society, 2011.","mla":"Alpichshev, Zhanybek, et al. “STM Imaging of a Bound State along a Step on the Surface of the Topological Insulator Bi2Te3.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 84, no. 4, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevB.84.041104\">10.1103/PhysRevB.84.041104</a>.","ama":"Alpichshev Z, Analytis JG, Chu JH, Fisher IR, Kapitulnik A. STM imaging of a bound state along a step on the surface of the topological insulator Bi2Te3. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2011;84(4). doi:<a href=\"https://doi.org/10.1103/PhysRevB.84.041104\">10.1103/PhysRevB.84.041104</a>","apa":"Alpichshev, Z., Analytis, J. G., Chu, J. H., Fisher, I. R., &#38; Kapitulnik, A. (2011). STM imaging of a bound state along a step on the surface of the topological insulator Bi2Te3. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.84.041104\">https://doi.org/10.1103/PhysRevB.84.041104</a>","ista":"Alpichshev Z, Analytis JG, Chu JH, Fisher IR, Kapitulnik A. 2011. STM imaging of a bound state along a step on the surface of the topological insulator Bi2Te3. Physical Review B - Condensed Matter and Materials Physics. 84(4).","short":"Z. Alpichshev, J.G. Analytis, J.H. Chu, I.R. Fisher, A. Kapitulnik, Physical Review B - Condensed Matter and Materials Physics 84 (2011).","chicago":"Alpichshev, Zhanybek, J G Analytis, J H Chu, I R Fisher, and A Kapitulnik. “STM Imaging of a Bound State along a Step on the Surface of the Topological Insulator Bi2Te3.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevB.84.041104\">https://doi.org/10.1103/PhysRevB.84.041104</a>."},"external_id":{"arxiv":["1003.2233"]}},{"_id":"3965","doi":"10.1145/1963190.1970375","page":"1 - 13","year":"2011","issue":"2.2","status":"public","author":[{"last_name":"Wang","full_name":"Wang, Bei","first_name":"Bei"},{"orcid":"0000-0002-9823-6833","last_name":"Edelsbrunner","full_name":"Edelsbrunner, Herbert","first_name":"Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Morozov, Dmitriy","first_name":"Dmitriy","last_name":"Morozov"}],"quality_controlled":"1","intvolume":"        16","oa_version":"None","citation":{"ista":"Wang B, Edelsbrunner H, Morozov D. 2011. Computing elevation maxima by searching the Gauss sphere. Journal of Experimental Algorithmics. 16(2.2), 1–13.","short":"B. Wang, H. Edelsbrunner, D. Morozov, Journal of Experimental Algorithmics 16 (2011) 1–13.","chicago":"Wang, Bei, Herbert Edelsbrunner, and Dmitriy Morozov. “Computing Elevation Maxima by Searching the Gauss Sphere.” <i>Journal of Experimental Algorithmics</i>. ACM, 2011. <a href=\"https://doi.org/10.1145/1963190.1970375\">https://doi.org/10.1145/1963190.1970375</a>.","ieee":"B. Wang, H. Edelsbrunner, and D. Morozov, “Computing elevation maxima by searching the Gauss sphere,” <i>Journal of Experimental Algorithmics</i>, vol. 16, no. 2.2. ACM, pp. 1–13, 2011.","mla":"Wang, Bei, et al. “Computing Elevation Maxima by Searching the Gauss Sphere.” <i>Journal of Experimental Algorithmics</i>, vol. 16, no. 2.2, ACM, 2011, pp. 1–13, doi:<a href=\"https://doi.org/10.1145/1963190.1970375\">10.1145/1963190.1970375</a>.","ama":"Wang B, Edelsbrunner H, Morozov D. Computing elevation maxima by searching the Gauss sphere. <i>Journal of Experimental Algorithmics</i>. 2011;16(2.2):1-13. doi:<a href=\"https://doi.org/10.1145/1963190.1970375\">10.1145/1963190.1970375</a>","apa":"Wang, B., Edelsbrunner, H., &#38; Morozov, D. (2011). Computing elevation maxima by searching the Gauss sphere. <i>Journal of Experimental Algorithmics</i>. ACM. <a href=\"https://doi.org/10.1145/1963190.1970375\">https://doi.org/10.1145/1963190.1970375</a>"},"type":"journal_article","publication":"Journal of Experimental Algorithmics","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","publist_id":"2161","department":[{"_id":"HeEd"}],"date_created":"2018-12-11T12:06:09Z","abstract":[{"text":"The elevation function on a smoothly embedded 2-manifold in R-3 reflects the multiscale topography of cavities and protrusions as local maxima. The function has been useful in identifying coarse docking configurations for protein pairs. Transporting the concept from the smooth to the piecewise linear category, this paper describes an algorithm for finding all local maxima. While its worst-case running time is the same as of the algorithm used in prior work, its performance in practice is orders of magnitudes superior. We cast light on this improvement by relating the running time to the total absolute Gaussian curvature of the 2-manifold.","lang":"eng"}],"day":"01","volume":16,"language":[{"iso":"eng"}],"title":"Computing elevation maxima by searching the Gauss sphere","publisher":"ACM","date_updated":"2021-01-12T07:53:31Z","publication_status":"published","scopus_import":1,"date_published":"2011-05-01T00:00:00Z","month":"05"},{"_id":"1723","doi":"10.1038/ncomms1536","quality_controlled":0,"year":"2011","author":[{"last_name":"Escudero","first_name":"Luis","full_name":"Escudero, Luis M"},{"full_name":"Costa, Luciano","first_name":"Luciano","last_name":"Costa"},{"orcid":"0000-0003-4509-4998","last_name":"Kicheva","full_name":"Anna Kicheva","first_name":"Anna","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Briscoe","first_name":"James","full_name":"Briscoe, James"},{"last_name":"Freeman","first_name":"Matthew","full_name":"Freeman, Matthew"},{"first_name":"Madan","full_name":"Babu, Madan M","last_name":"Babu"}],"status":"public","issue":"1","acknowledgement":"We acknowledge the MRC for funding, M.M.B. acknowledges Darwin College, EMBO YIP and Schlumberger Ltd for support. L.M.E. is funded by the Marie Curie and the EMBO fellowships. L.d.F.C. is grateful to FAPESP (05/00587-5) and CNPq (301303/06-1) for financial support. Part of this work was performed during a Visiting Scholarship to L.d.F.C. from St Catharine's College, University of Cambridge. J.B. is supported by the MRC (UK) and A.K. by a FEBS fellowship","citation":{"ama":"Escudero L, Costa L, Kicheva A, Briscoe J, Freeman M, Babu M. Epithelial organisation revealed by a network of cellular contacts. <i>Nature Communications</i>. 2011;2(1). doi:<a href=\"https://doi.org/10.1038/ncomms1536\">10.1038/ncomms1536</a>","apa":"Escudero, L., Costa, L., Kicheva, A., Briscoe, J., Freeman, M., &#38; Babu, M. (2011). Epithelial organisation revealed by a network of cellular contacts. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncomms1536\">https://doi.org/10.1038/ncomms1536</a>","mla":"Escudero, Luis, et al. “Epithelial Organisation Revealed by a Network of Cellular Contacts.” <i>Nature Communications</i>, vol. 2, no. 1, Nature Publishing Group, 2011, doi:<a href=\"https://doi.org/10.1038/ncomms1536\">10.1038/ncomms1536</a>.","ieee":"L. Escudero, L. Costa, A. Kicheva, J. Briscoe, M. Freeman, and M. Babu, “Epithelial organisation revealed by a network of cellular contacts,” <i>Nature Communications</i>, vol. 2, no. 1. Nature Publishing Group, 2011.","short":"L. Escudero, L. Costa, A. Kicheva, J. Briscoe, M. Freeman, M. Babu, Nature Communications 2 (2011).","chicago":"Escudero, Luis, Luciano Costa, Anna Kicheva, James Briscoe, Matthew Freeman, and Madan Babu. “Epithelial Organisation Revealed by a Network of Cellular Contacts.” <i>Nature Communications</i>. Nature Publishing Group, 2011. <a href=\"https://doi.org/10.1038/ncomms1536\">https://doi.org/10.1038/ncomms1536</a>.","ista":"Escudero L, Costa L, Kicheva A, Briscoe J, Freeman M, Babu M. 2011. Epithelial organisation revealed by a network of cellular contacts. Nature Communications. 2(1)."},"intvolume":"         2","publication":"Nature Communications","publist_id":"5405","type":"journal_article","date_created":"2018-12-11T11:53:40Z","abstract":[{"text":"The emergence of differences in the arrangement of cells is the first step towards the establishment of many organs. Understanding this process is limited by the lack of systematic characterization of epithelial organisation. Here we apply network theory at the scale of individual cells to uncover patterns in cell-to-cell contacts that govern epithelial organisation. We provide an objective characterisation of epithelia using network representation, where cells are nodes and cell contacts are links. The features of individual cells, together with attributes of the cellular network, produce a defining signature that distinguishes epithelia from different organs, species, developmental stages and genetic conditions. The approach permits characterization, quantification and classification of normal and perturbed epithelia, and establishes a framework for understanding molecular mechanisms that underpin the architecture of complex tissues.","lang":"eng"}],"day":"01","title":"Epithelial organisation revealed by a network of cellular contacts","volume":2,"publisher":"Nature Publishing Group","extern":1,"publication_status":"published","date_updated":"2021-01-12T06:52:46Z","date_published":"2011-01-01T00:00:00Z","month":"01"},{"volume":331,"title":"Dynamics of Dpp signaling and proliferation control","abstract":[{"text":"Morphogens, such as Decapentaplegic (Dpp) in the fly imaginal discs, form graded concentration profiles that control patterning and growth of developing organs. In the imaginal discs, proliferative growth is homogeneous in space, posing the conundrum of how morphogen concentration gradients could control position-independent growth. To understand the mechanism of proliferation control by the Dpp gradient, we quantified Dpp concentration and signaling levels during wing disc growth. Both Dpp concentration and signaling gradients scale with tissue size during development. On average, cells divide when Dpp signaling levels have increased by 50%. Our observations are consistent with a growth control mechanism based on temporal changes of cellular morphogen signaling levels. For a scaling gradient, this mechanism generates position-independent growth rates.","lang":"eng"}],"day":"04","date_created":"2018-12-11T11:53:40Z","month":"03","date_published":"2011-03-04T00:00:00Z","publication_status":"published","date_updated":"2021-01-12T06:52:46Z","extern":1,"publisher":"American Association for the Advancement of Science","status":"public","year":"2011","issue":"6021","page":"1154 - 1159","author":[{"first_name":"Ortrud","full_name":"Wartlick, Ortrud","last_name":"Wartlick"},{"last_name":"Mumcu","full_name":"Mumcu, Peer","first_name":"Peer"},{"orcid":"0000-0003-4509-4998","last_name":"Kicheva","full_name":"Anna Kicheva","first_name":"Anna","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Bittig","first_name":"Thomas","full_name":"Bittig, Thomas"},{"last_name":"Seum","full_name":"Seum, Carole","first_name":"Carole"},{"last_name":"Jülicher","first_name":"Frank","full_name":"Jülicher, Frank"},{"first_name":"Marcos","full_name":"González-Gaitán, Marcos A","last_name":"González Gaitán"}],"quality_controlled":0,"doi":"10.1126/science.1200037","_id":"1724","publication":"Science","type":"journal_article","publist_id":"5406","intvolume":"       331","acknowledgement":"P.M., T.B., and F.J. were supported by the Max-Planck-Gesellschaft. O.W., A.K., C.S., and M.G.-G. were supported by Geneva University and by European Research Council advanced investigator grant (SARA), SystemsX (LipidX), Swiss National Science Foundation (SNF), National Centre of Competence in Research (NCCR) chemical biology and Frontiers in Genetics and R'equip grants","citation":{"ama":"Wartlick O, Mumcu P, Kicheva A, et al. Dynamics of Dpp signaling and proliferation control. <i>Science</i>. 2011;331(6021):1154-1159. doi:<a href=\"https://doi.org/10.1126/science.1200037\">10.1126/science.1200037</a>","apa":"Wartlick, O., Mumcu, P., Kicheva, A., Bittig, T., Seum, C., Jülicher, F., &#38; González Gaitán, M. (2011). Dynamics of Dpp signaling and proliferation control. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1200037\">https://doi.org/10.1126/science.1200037</a>","mla":"Wartlick, Ortrud, et al. “Dynamics of Dpp Signaling and Proliferation Control.” <i>Science</i>, vol. 331, no. 6021, American Association for the Advancement of Science, 2011, pp. 1154–59, doi:<a href=\"https://doi.org/10.1126/science.1200037\">10.1126/science.1200037</a>.","ieee":"O. Wartlick <i>et al.</i>, “Dynamics of Dpp signaling and proliferation control,” <i>Science</i>, vol. 331, no. 6021. American Association for the Advancement of Science, pp. 1154–1159, 2011.","short":"O. Wartlick, P. Mumcu, A. Kicheva, T. Bittig, C. Seum, F. Jülicher, M. González Gaitán, Science 331 (2011) 1154–1159.","chicago":"Wartlick, Ortrud, Peer Mumcu, Anna Kicheva, Thomas Bittig, Carole Seum, Frank Jülicher, and Marcos González Gaitán. “Dynamics of Dpp Signaling and Proliferation Control.” <i>Science</i>. American Association for the Advancement of Science, 2011. <a href=\"https://doi.org/10.1126/science.1200037\">https://doi.org/10.1126/science.1200037</a>.","ista":"Wartlick O, Mumcu P, Kicheva A, Bittig T, Seum C, Jülicher F, González Gaitán M. 2011. Dynamics of Dpp signaling and proliferation control. Science. 331(6021), 1154–1159."}},{"year":"2011","issue":"9","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","oa":1,"publication_status":"published","date_updated":"2021-01-12T06:52:59Z","month":"09","date_published":"2011-09-27T00:00:00Z","publisher":"American Chemical Society","quality_controlled":"1","page":"7117 - 7123","author":[{"last_name":"Mongillo","first_name":"Massimo","full_name":"Mongillo, Massimo"},{"first_name":"Panayotis","full_name":"Spathis, Panayotis","last_name":"Spathis"},{"last_name":"Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","full_name":"Katsaros, Georgios"},{"full_name":"Gentile, Pascal","first_name":"Pascal","last_name":"Gentile"},{"last_name":"Sanquer","first_name":"Marc","full_name":"Sanquer, Marc"},{"full_name":"De Franceschi, Silvano","first_name":"Silvano","last_name":"De Franceschi"}],"_id":"1754","doi":"10.1021/nn202524j","type":"journal_article","publist_id":"5370","publication":"ACS Nano","external_id":{"arxiv":["1110.5668"]},"citation":{"chicago":"Mongillo, Massimo, Panayotis Spathis, Georgios Katsaros, Pascal Gentile, Marc Sanquer, and Silvano De Franceschi. “Joule-Assisted Silicidation for Short-Channel Silicon Nanowire Devices.” <i>ACS Nano</i>. American Chemical Society, 2011. <a href=\"https://doi.org/10.1021/nn202524j\">https://doi.org/10.1021/nn202524j</a>.","short":"M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, M. Sanquer, S. De Franceschi, ACS Nano 5 (2011) 7117–7123.","ista":"Mongillo M, Spathis P, Katsaros G, Gentile P, Sanquer M, De Franceschi S. 2011. Joule-assisted silicidation for short-channel silicon nanowire devices. ACS Nano. 5(9), 7117–7123.","apa":"Mongillo, M., Spathis, P., Katsaros, G., Gentile, P., Sanquer, M., &#38; De Franceschi, S. (2011). Joule-assisted silicidation for short-channel silicon nanowire devices. <i>ACS Nano</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/nn202524j\">https://doi.org/10.1021/nn202524j</a>","ama":"Mongillo M, Spathis P, Katsaros G, Gentile P, Sanquer M, De Franceschi S. Joule-assisted silicidation for short-channel silicon nanowire devices. <i>ACS Nano</i>. 2011;5(9):7117-7123. doi:<a href=\"https://doi.org/10.1021/nn202524j\">10.1021/nn202524j</a>","ieee":"M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, M. Sanquer, and S. De Franceschi, “Joule-assisted silicidation for short-channel silicon nanowire devices,” <i>ACS Nano</i>, vol. 5, no. 9. American Chemical Society, pp. 7117–7123, 2011.","mla":"Mongillo, Massimo, et al. “Joule-Assisted Silicidation for Short-Channel Silicon Nanowire Devices.” <i>ACS Nano</i>, vol. 5, no. 9, American Chemical Society, 2011, pp. 7117–23, doi:<a href=\"https://doi.org/10.1021/nn202524j\">10.1021/nn202524j</a>."},"acknowledgement":"This work was supported by the Agence Nationale de la Recherche (ANR) through the ACCESS and COHESION projects and by the European Commission through the Chemtronics program MEST-CT-2005-020513","intvolume":"         5","arxiv":1,"language":[{"iso":"eng"}],"main_file_link":[{"url":"http://arxiv.org/abs/1110.5668","open_access":"1"}],"title":"Joule-assisted silicidation for short-channel silicon nanowire devices","volume":5,"date_created":"2018-12-11T11:53:50Z","abstract":[{"text":"We report on a technique enabling electrical control of the contact silicidation process in silicon nanowire devices. Undoped silicon nanowires were contacted by pairs of nickel electrodes and each contact was selectively silicided by means of the Joule effect. By a realtime monitoring of the nanowire electrical resistance during the contact silicidation process we were able to fabricate nickel-silicide/silicon/nickel- silicide devices with controlled silicon channel length down to 8 nm. ","lang":"eng"}],"day":"27","extern":"1"}]