[{"extern":"1","status":"public","page":"2551-2565","keyword":["Atmospheric Science"],"date_updated":"2022-01-24T13:49:41Z","article_processing_charge":"No","doi":"10.1175/jas-d-11-0257.1","_id":"9142","date_created":"2021-02-15T14:39:03Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1175/JAS-D-11-0257.1"}],"language":[{"iso":"eng"}],"oa_version":"Published Version","fulldoi":"https://doi.org/10.1175/jas-d-11-0257.1","volume":69,"author":[{"orcid":"0000-0001-5836-5350","id":"f978ccb0-3f7f-11eb-b193-b0e2bd13182b","first_name":"Caroline J","full_name":"Muller, Caroline J","last_name":"Muller"},{"full_name":"Held, Isaac M.","last_name":"Held","first_name":"Isaac M."}],"citation":{"mla":"Muller, Caroline J., and Isaac M. Held. “Detailed Investigation of the Self-Aggregation of Convection in Cloud-Resolving Simulations.” <i>Journal of the Atmospheric Sciences</i>, vol. 69, no. 8, American Meteorological Society, 2012, pp. 2551–65, doi:<a href=\"https://doi.org/10.1175/jas-d-11-0257.1\">10.1175/jas-d-11-0257.1</a>.","chicago":"Muller, Caroline J, and Isaac M. Held. “Detailed Investigation of the Self-Aggregation of Convection in Cloud-Resolving Simulations.” <i>Journal of the Atmospheric Sciences</i>. American Meteorological Society, 2012. <a href=\"https://doi.org/10.1175/jas-d-11-0257.1\">https://doi.org/10.1175/jas-d-11-0257.1</a>.","ieee":"C. J. Muller and I. M. Held, “Detailed investigation of the self-aggregation of convection in cloud-resolving simulations,” <i>Journal of the Atmospheric Sciences</i>, vol. 69, no. 8. American Meteorological Society, pp. 2551–2565, 2012.","apa":"Muller, C. J., &#38; Held, I. M. (2012). Detailed investigation of the self-aggregation of convection in cloud-resolving simulations. <i>Journal of the Atmospheric Sciences</i>. American Meteorological Society. <a href=\"https://doi.org/10.1175/jas-d-11-0257.1\">https://doi.org/10.1175/jas-d-11-0257.1</a>","ista":"Muller CJ, Held IM. 2012. Detailed investigation of the self-aggregation of convection in cloud-resolving simulations. Journal of the Atmospheric Sciences. 69(8), 2551–2565.","ama":"Muller CJ, Held IM. Detailed investigation of the self-aggregation of convection in cloud-resolving simulations. <i>Journal of the Atmospheric Sciences</i>. 2012;69(8):2551-2565. doi:<a href=\"https://doi.org/10.1175/jas-d-11-0257.1\">10.1175/jas-d-11-0257.1</a>","short":"C.J. Muller, I.M. Held, Journal of the Atmospheric Sciences 69 (2012) 2551–2565."},"abstract":[{"text":"In models of radiative–convective equilibrium it is known that convection can spontaneously aggregate into one single localized moist region if the domain is large enough. The large changes in the mean climate state and radiative fluxes accompanying this self-aggregation raise questions as to what simulations at lower resolutions with parameterized convection, in similar homogeneous geometries, should be expected to produce to be considered successful in mimicking a cloud-resolving model.\r\nThe authors investigate this self-aggregation in a nonrotating, three-dimensional cloud-resolving model on a square domain without large-scale forcing. It is found that self-aggregation is sensitive not only to the domain size, but also to the horizontal resolution. With horizontally homogeneous initial conditions, convective aggregation only occurs on domains larger than about 200km and with resolutions coarser than about 2km in the model examined. The system exhibits hysteresis, so that with aggregated initial conditions, convection remains aggregated even at our finest resolution, 500m, as long as the domain is greater than 200–300km.\r\nThe sensitivity of self-aggregation to resolution and domain size in this model is due to the sensitivity of the distribution of low clouds to these two parameters. Indeed, the mechanism responsible for the aggregation of convection is the dynamical response to the longwave radiative cooling from low clouds. Strong longwave cooling near cloud top in dry regions forces downward motion, which by continuity generates inflow near cloud top and near-surface outflow from dry regions. This circulation results in the net export of moist static energy from regions with low moist static energy, yielding a positive feedback.","lang":"eng"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publisher":"American Meteorological Society","publication_status":"published","quality_controlled":"1","oa":1,"publication_identifier":{"issn":["0022-4928","1520-0469"]},"day":"01","publication":"Journal of the Atmospheric Sciences","issue":"8","intvolume":"        69","article_type":"original","type":"journal_article","year":"2012","date_published":"2012-08-01T00:00:00Z","month":"08","title":"Detailed investigation of the self-aggregation of convection in cloud-resolving simulations"},{"volume":109,"fulldoi":"https://doi.org/10.1103/PhysRevLett.109.018101","external_id":{"arxiv":["1207.1516"]},"date_created":"2018-12-11T11:49:13Z","language":[{"iso":"eng"}],"oa_version":"Preprint","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1207.1516"}],"date_updated":"2021-01-12T08:21:56Z","_id":"922","doi":"10.1103/PhysRevLett.109.018101","article_processing_charge":"No","status":"public","extern":"1","year":"2012","month":"07","title":"Mechanical instabilities of biological tubes","date_published":"2012-07-03T00:00:00Z","issue":"1","day":"03","publication":"Physical Review Letters","intvolume":"       109","type":"journal_article","publication_status":"published","oa":1,"arxiv":1,"publist_id":"6519","abstract":[{"lang":"eng","text":"We study theoretically the morphologies of biological tubes affected by various pathologies. When epithelial cells grow, the negative tension produced by their division provokes a buckling instability. Several shapes are investigated: varicose, dilated, sinuous, or sausagelike. They are all found in pathologies of tracheal, renal tubes, or arteries. The final shape depends crucially on the mechanical parameters of the tissues: Young's modulus, wall-to-lumen ratio, homeostatic pressure. We argue that since tissues must be in quasistatic mechanical equilibrium, abnormal shapes convey information as to what causes the pathology. We calculate a phase diagram of tubular instabilities which could be a helpful guide for investigating the underlying genetic regulation."}],"author":[{"last_name":"Hannezo","full_name":"Hannezo, Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","first_name":"Edouard B"},{"first_name":"Jacques","last_name":"Prost","full_name":"Prost, Jacques"},{"first_name":"Jean","last_name":"Joanny","full_name":"Joanny, Jean"}],"citation":{"apa":"Hannezo, E. B., Prost, J., &#38; Joanny, J. (2012). Mechanical instabilities of biological tubes. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.109.018101\">https://doi.org/10.1103/PhysRevLett.109.018101</a>","chicago":"Hannezo, Edouard B, Jacques Prost, and Jean Joanny. “Mechanical Instabilities of Biological Tubes.” <i>Physical Review Letters</i>. American Physical Society, 2012. <a href=\"https://doi.org/10.1103/PhysRevLett.109.018101\">https://doi.org/10.1103/PhysRevLett.109.018101</a>.","ieee":"E. B. Hannezo, J. Prost, and J. Joanny, “Mechanical instabilities of biological tubes,” <i>Physical Review Letters</i>, vol. 109, no. 1. American Physical Society, 2012.","mla":"Hannezo, Edouard B., et al. “Mechanical Instabilities of Biological Tubes.” <i>Physical Review Letters</i>, vol. 109, no. 1, American Physical Society, 2012, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.109.018101\">10.1103/PhysRevLett.109.018101</a>.","short":"E.B. Hannezo, J. Prost, J. Joanny, Physical Review Letters 109 (2012).","ama":"Hannezo EB, Prost J, Joanny J. Mechanical instabilities of biological tubes. <i>Physical Review Letters</i>. 2012;109(1). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.109.018101\">10.1103/PhysRevLett.109.018101</a>","ista":"Hannezo EB, Prost J, Joanny J. 2012. Mechanical instabilities of biological tubes. Physical Review Letters. 109(1)."},"publisher":"American Physical Society","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"pmid":1,"abstract":[{"lang":"eng","text":"The Arabidopsis thaliana central cell, the companion cell of the egg, undergoes DNA demethylation before fertilization, but the targeting preferences, mechanism, and biological significance of this process remain unclear. Here, we show that active DNA demethylation mediated by the DEMETER DNA glycosylase accounts for all of the demethylation in the central cell and preferentially targets small, AT-rich, and nucleosome-depleted euchromatic transposable elements. The vegetative cell, the companion cell of sperm, also undergoes DEMETER-dependent demethylation of similar sequences, and lack of DEMETER in vegetative cells causes reduced small RNA–directed DNA methylation of transposons in sperm. Our results demonstrate that demethylation in companion cells reinforces transposon methylation in plant gametes and likely contributes to stable silencing of transposable elements across generations."}],"author":[{"first_name":"Christian A.","last_name":"Ibarra","full_name":"Ibarra, Christian A."},{"first_name":"Xiaoqi","full_name":"Feng, Xiaoqi","last_name":"Feng"},{"last_name":"Schoft","full_name":"Schoft, Vera K.","first_name":"Vera K."},{"last_name":"Hsieh","full_name":"Hsieh, Tzung-Fu","first_name":"Tzung-Fu"},{"first_name":"Rie","last_name":"Uzawa","full_name":"Uzawa, Rie"},{"first_name":"Jessica A.","last_name":"Rodrigues","full_name":"Rodrigues, Jessica A."},{"first_name":"Assaf","full_name":"Zemach, Assaf","last_name":"Zemach"},{"first_name":"Nina","full_name":"Chumak, Nina","last_name":"Chumak"},{"first_name":"Adriana","last_name":"Machlicova","full_name":"Machlicova, Adriana"},{"first_name":"Toshiro","full_name":"Nishimura, Toshiro","last_name":"Nishimura"},{"first_name":"Denisse","full_name":"Rojas, Denisse","last_name":"Rojas"},{"last_name":"Fischer","full_name":"Fischer, Robert L.","first_name":"Robert L."},{"last_name":"Tamaru","full_name":"Tamaru, Hisashi","first_name":"Hisashi"},{"orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","first_name":"Daniel","full_name":"Zilberman, Daniel","last_name":"Zilberman"}],"citation":{"short":"C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. Zilberman, Science 337 (2012) 1360–1364.","ama":"Ibarra CA, Feng X, Schoft VK, et al. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. <i>Science</i>. 2012;337(6100):1360-1364. doi:<a href=\"https://doi.org/10.1126/science.1224839\">10.1126/science.1224839</a>","ista":"Ibarra CA, Feng X, Schoft VK, Hsieh T-F, Uzawa R, Rodrigues JA, Zemach A, Chumak N, Machlicova A, Nishimura T, Rojas D, Fischer RL, Tamaru H, Zilberman D. 2012. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science. 337(6100), 1360–1364.","apa":"Ibarra, C. A., Feng, X., Schoft, V. K., Hsieh, T.-F., Uzawa, R., Rodrigues, J. A., … Zilberman, D. (2012). Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1224839\">https://doi.org/10.1126/science.1224839</a>","chicago":"Ibarra, Christian A., Xiaoqi Feng, Vera K. Schoft, Tzung-Fu Hsieh, Rie Uzawa, Jessica A. Rodrigues, Assaf Zemach, et al. “Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes.” <i>Science</i>. American Association for the Advancement of Science, 2012. <a href=\"https://doi.org/10.1126/science.1224839\">https://doi.org/10.1126/science.1224839</a>.","ieee":"C. A. Ibarra <i>et al.</i>, “Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes,” <i>Science</i>, vol. 337, no. 6100. American Association for the Advancement of Science, pp. 1360–1364, 2012.","mla":"Ibarra, Christian A., et al. “Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes.” <i>Science</i>, vol. 337, no. 6100, American Association for the Advancement of Science, 2012, pp. 1360–64, doi:<a href=\"https://doi.org/10.1126/science.1224839\">10.1126/science.1224839</a>."},"publisher":"American Association for the Advancement of Science","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","quality_controlled":"1","publication_status":"published","publication_identifier":{"issn":["0036-8075"],"eissn":["1095-9203"]},"oa":1,"issue":"6100","ddc":["580"],"day":"14","publication":"Science","intvolume":"       337","article_type":"original","type":"journal_article","year":"2012","month":"09","title":"Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes","date_published":"2012-09-14T00:00:00Z","department":[{"_id":"DaZi"}],"status":"public","extern":"1","date_updated":"2021-12-14T08:28:51Z","scopus_import":"1","page":"1360-1364","doi":"10.1126/science.1224839","_id":"9451","article_processing_charge":"No","has_accepted_license":"1","date_created":"2021-06-04T07:51:31Z","language":[{"iso":"eng"}],"oa_version":"Published Version","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4034762/","open_access":"1"}],"volume":337,"fulldoi":"https://doi.org/10.1126/science.1224839","external_id":{"pmid":["22984074"]}},{"issue":"10","publication":"PLoS Genetics","day":"11","type":"journal_article","article_type":"original","intvolume":"         8","year":"2012","title":"Deposition of histone variant H2A.Z within gene bodies regulates responsive genes","month":"10","date_published":"2012-10-11T00:00:00Z","abstract":[{"text":"The regulation of eukaryotic chromatin relies on interactions between many epigenetic factors, including histone modifications, DNA methylation, and the incorporation of histone variants. H2A.Z, one of the most conserved but enigmatic histone variants that is enriched at the transcriptional start sites of genes, has been implicated in a variety of chromosomal processes. Recently, we reported a genome-wide anticorrelation between H2A.Z and DNA methylation, an epigenetic hallmark of heterochromatin that has also been found in the bodies of active genes in plants and animals. Here, we investigate the basis of this anticorrelation using a novel h2a.z loss-of-function line in Arabidopsis thaliana. Through genome-wide bisulfite sequencing, we demonstrate that loss of H2A.Z in Arabidopsis has only a minor effect on the level or profile of DNA methylation in genes, and we propose that the global anticorrelation between DNA methylation and H2A.Z is primarily caused by the exclusion of H2A.Z from methylated DNA. RNA sequencing and genomic mapping of H2A.Z show that H2A.Z enrichment across gene bodies, rather than at the TSS, is correlated with lower transcription levels and higher measures of gene responsiveness. Loss of H2A.Z causes misregulation of many genes that are disproportionately associated with response to environmental and developmental stimuli. We propose that H2A.Z deposition in gene bodies promotes variability in levels and patterns of gene expression, and that a major function of genic DNA methylation is to exclude H2A.Z from constitutively expressed genes.","lang":"eng"}],"pmid":1,"citation":{"chicago":"Coleman-Derr, Devin, and Daniel Zilberman. “Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes.” <i>PLoS Genetics</i>. Public Library of Science, 2012. <a href=\"https://doi.org/10.1371/journal.pgen.1002988\">https://doi.org/10.1371/journal.pgen.1002988</a>.","mla":"Coleman-Derr, Devin, and Daniel Zilberman. “Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes.” <i>PLoS Genetics</i>, vol. 8, no. 10, e1002988, Public Library of Science, 2012, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1002988\">10.1371/journal.pgen.1002988</a>.","ieee":"D. Coleman-Derr and D. Zilberman, “Deposition of histone variant H2A.Z within gene bodies regulates responsive genes,” <i>PLoS Genetics</i>, vol. 8, no. 10. Public Library of Science, 2012.","apa":"Coleman-Derr, D., &#38; Zilberman, D. (2012). Deposition of histone variant H2A.Z within gene bodies regulates responsive genes. <i>PLoS Genetics</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1002988\">https://doi.org/10.1371/journal.pgen.1002988</a>","ista":"Coleman-Derr D, Zilberman D. 2012. Deposition of histone variant H2A.Z within gene bodies regulates responsive genes. PLoS Genetics. 8(10), e1002988.","short":"D. Coleman-Derr, D. Zilberman, PLoS Genetics 8 (2012).","ama":"Coleman-Derr D, Zilberman D. Deposition of histone variant H2A.Z within gene bodies regulates responsive genes. <i>PLoS Genetics</i>. 2012;8(10). doi:<a href=\"https://doi.org/10.1371/journal.pgen.1002988\">10.1371/journal.pgen.1002988</a>"},"author":[{"full_name":"Coleman-Derr, Devin","last_name":"Coleman-Derr","first_name":"Devin"},{"full_name":"Zilberman, Daniel","last_name":"Zilberman","orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","first_name":"Daniel"}],"publisher":"Public Library of Science","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","quality_controlled":"1","publication_status":"published","publication_identifier":{"eissn":["1553-7404"],"issn":["1553-7390"]},"oa":1,"date_created":"2021-06-07T10:55:27Z","oa_version":"Published Version","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1371/journal.pgen.1002988"}],"volume":8,"external_id":{"pmid":["23071449"]},"fulldoi":"https://doi.org/10.1371/journal.pgen.1002988","article_number":"e1002988","department":[{"_id":"DaZi"}],"status":"public","extern":"1","scopus_import":"1","date_updated":"2021-12-14T08:29:57Z","doi":"10.1371/journal.pgen.1002988","_id":"9497","article_processing_charge":"No"},{"type":"journal_article","intvolume":"         8","article_type":"original","issue":"3","publication":"PLoS Genetics","day":"22","month":"03","title":"EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development","date_published":"2012-03-22T00:00:00Z","year":"2012","publisher":"Public Library of Science","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","abstract":[{"lang":"eng","text":"EMBRYONIC FLOWER1 (EMF1) is a plant-specific gene crucial to Arabidopsis vegetative development. Loss of function mutants in the EMF1 gene mimic the phenotype caused by mutations in Polycomb Group protein (PcG) genes, which encode epigenetic repressors that regulate many aspects of eukaryotic development. In Arabidopsis, Polycomb Repressor Complex 2 (PRC2), made of PcG proteins, catalyzes trimethylation of lysine 27 on histone H3 (H3K27me3) and PRC1-like proteins catalyze H2AK119 ubiquitination. Despite functional similarity to PcG proteins, EMF1 lacks sequence homology with known PcG proteins; thus, its role in the PcG mechanism is unclear. To study the EMF1 functions and its mechanism of action, we performed genome-wide mapping of EMF1 binding and H3K27me3 modification sites in Arabidopsis seedlings. The EMF1 binding pattern is similar to that of H3K27me3 modification on the chromosomal and genic level. ChIPOTLe peak finding and clustering analyses both show that the highly trimethylated genes also have high enrichment levels of EMF1 binding, termed EMF1_K27 genes. EMF1 interacts with regulatory genes, which are silenced to allow vegetative growth, and with genes specifying cell fates during growth and differentiation. H3K27me3 marks not only these genes but also some genes that are involved in endosperm development and maternal effects. Transcriptome analysis, coupled with the H3K27me3 pattern, of EMF1_K27 genes in emf1 and PRC2 mutants showed that EMF1 represses gene activities via diverse mechanisms and plays a novel role in the PcG mechanism."}],"pmid":1,"citation":{"apa":"Kim, S. Y., Lee, J., Eshed-Williams, L., Zilberman, D., &#38; Sung, Z. R. (2012). EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development. <i>PLoS Genetics</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pgen.1002512\">https://doi.org/10.1371/journal.pgen.1002512</a>","ieee":"S. Y. Kim, J. Lee, L. Eshed-Williams, D. Zilberman, and Z. R. Sung, “EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development,” <i>PLoS Genetics</i>, vol. 8, no. 3. Public Library of Science, 2012.","chicago":"Kim, Sang Yeol, Jungeun Lee, Leor Eshed-Williams, Daniel Zilberman, and Z. Renee Sung. “EMF1 and PRC2 Cooperate to Repress Key Regulators of Arabidopsis Development.” <i>PLoS Genetics</i>. Public Library of Science, 2012. <a href=\"https://doi.org/10.1371/journal.pgen.1002512\">https://doi.org/10.1371/journal.pgen.1002512</a>.","mla":"Kim, Sang Yeol, et al. “EMF1 and PRC2 Cooperate to Repress Key Regulators of Arabidopsis Development.” <i>PLoS Genetics</i>, vol. 8, no. 3, e1002512, Public Library of Science, 2012, doi:<a href=\"https://doi.org/10.1371/journal.pgen.1002512\">10.1371/journal.pgen.1002512</a>.","short":"S.Y. Kim, J. Lee, L. Eshed-Williams, D. Zilberman, Z.R. Sung, PLoS Genetics 8 (2012).","ama":"Kim SY, Lee J, Eshed-Williams L, Zilberman D, Sung ZR. EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development. <i>PLoS Genetics</i>. 2012;8(3). doi:<a href=\"https://doi.org/10.1371/journal.pgen.1002512\">10.1371/journal.pgen.1002512</a>","ista":"Kim SY, Lee J, Eshed-Williams L, Zilberman D, Sung ZR. 2012. EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development. PLoS Genetics. 8(3), e1002512."},"author":[{"full_name":"Kim, Sang Yeol","last_name":"Kim","first_name":"Sang Yeol"},{"first_name":"Jungeun","full_name":"Lee, Jungeun","last_name":"Lee"},{"first_name":"Leor","last_name":"Eshed-Williams","full_name":"Eshed-Williams, Leor"},{"last_name":"Zilberman","full_name":"Zilberman, Daniel","first_name":"Daniel","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","orcid":"0000-0002-0123-8649"},{"last_name":"Sung","full_name":"Sung, Z. Renee","first_name":"Z. Renee"}],"publication_identifier":{"issn":["1553-7390"],"eissn":["1553-7404"]},"oa":1,"quality_controlled":"1","publication_status":"published","oa_version":"Published Version","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1371/journal.pgen.1002512"}],"date_created":"2021-06-07T11:07:56Z","volume":8,"external_id":{"pmid":["22457632"]},"fulldoi":"https://doi.org/10.1371/journal.pgen.1002512","status":"public","extern":"1","article_number":"e1002512","department":[{"_id":"DaZi"}],"doi":"10.1371/journal.pgen.1002512","_id":"9499","article_processing_charge":"No","date_updated":"2021-12-14T08:31:14Z","scopus_import":"1"},{"publication_identifier":{"issn":["0959-437X"]},"quality_controlled":"1","publication_status":"published","publisher":"Elsevier","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","abstract":[{"text":"Accumulating evidence points toward diverse functions for plant chromatin. Remarkable progress has been made over the last few years in elucidating the mechanisms for a number of these functions. Activity of the histone demethylase IBM1 accurately targets DNA methylation to silent repeats and transposable elements, not to genes. A genetic screen uncovered the surprising role of H2A.Z-containing nucleosomes in sensing precise differences in ambient temperature and consequent gene regulation. Precise maintenance of chromosome number is assured by a histone modification that suppresses inappropriate DNA replication and by centromeric histone H3 regulation of chromosome segregation. Histones and noncoding RNAs regulate FLOWERING LOCUS C, the expression of which quantitatively measures the duration of cold exposure, functioning as memory of winter. These findings are a testament to the power of using plants to research chromatin organization, and demonstrate examples of how chromatin functions to achieve biological accuracy, precision, and memory.","lang":"eng"}],"pmid":1,"citation":{"ieee":"J. T. Huff and D. Zilberman, “Regulation of biological accuracy, precision, and memory by plant chromatin organization,” <i>Current Opinion in Genetics and Development</i>, vol. 22, no. 2. Elsevier, pp. 132–138, 2012.","mla":"Huff, Jason T., and Daniel Zilberman. “Regulation of Biological Accuracy, Precision, and Memory by Plant Chromatin Organization.” <i>Current Opinion in Genetics and Development</i>, vol. 22, no. 2, Elsevier, 2012, pp. 132–38, doi:<a href=\"https://doi.org/10.1016/j.gde.2012.01.007\">10.1016/j.gde.2012.01.007</a>.","chicago":"Huff, Jason T., and Daniel Zilberman. “Regulation of Biological Accuracy, Precision, and Memory by Plant Chromatin Organization.” <i>Current Opinion in Genetics and Development</i>. Elsevier, 2012. <a href=\"https://doi.org/10.1016/j.gde.2012.01.007\">https://doi.org/10.1016/j.gde.2012.01.007</a>.","apa":"Huff, J. T., &#38; Zilberman, D. (2012). Regulation of biological accuracy, precision, and memory by plant chromatin organization. <i>Current Opinion in Genetics and Development</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.gde.2012.01.007\">https://doi.org/10.1016/j.gde.2012.01.007</a>","ista":"Huff JT, Zilberman D. 2012. Regulation of biological accuracy, precision, and memory by plant chromatin organization. Current Opinion in Genetics and Development. 22(2), 132–138.","short":"J.T. Huff, D. Zilberman, Current Opinion in Genetics and Development 22 (2012) 132–138.","ama":"Huff JT, Zilberman D. Regulation of biological accuracy, precision, and memory by plant chromatin organization. <i>Current Opinion in Genetics and Development</i>. 2012;22(2):132-138. doi:<a href=\"https://doi.org/10.1016/j.gde.2012.01.007\">10.1016/j.gde.2012.01.007</a>"},"author":[{"first_name":"Jason T.","full_name":"Huff, Jason T.","last_name":"Huff"},{"last_name":"Zilberman","full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649","first_name":"Daniel","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1"}],"month":"04","title":"Regulation of biological accuracy, precision, and memory by plant chromatin organization","date_published":"2012-04-01T00:00:00Z","year":"2012","type":"journal_article","article_type":"review","intvolume":"        22","issue":"2","publication":"Current Opinion in Genetics and Development","doi":"10.1016/j.gde.2012.01.007","_id":"9528","article_processing_charge":"No","scopus_import":"1","date_updated":"2021-12-14T08:32:38Z","page":"132-138","status":"public","extern":"1","department":[{"_id":"DaZi"}],"volume":22,"external_id":{"pmid":["22336527"]},"fulldoi":"https://doi.org/10.1016/j.gde.2012.01.007","oa_version":"None","language":[{"iso":"eng"}],"date_created":"2021-06-08T08:58:52Z"},{"scopus_import":"1","date_updated":"2021-12-14T08:33:09Z","page":"147-154","_id":"9535","doi":"10.1101/sqb.2012.77.014944","article_processing_charge":"No","department":[{"_id":"DaZi"}],"status":"public","extern":"1","volume":77,"fulldoi":"https://doi.org/10.1101/sqb.2012.77.014944","external_id":{"pmid":["23250988"]},"date_created":"2021-06-08T13:01:23Z","language":[{"iso":"eng"}],"oa_version":"Published Version","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/sqb.2012.77.014944"}],"quality_controlled":"1","publication_status":"published","publication_identifier":{"eissn":["1943-4456"],"issn":["0091-7451"]},"oa":1,"pmid":1,"abstract":[{"lang":"eng","text":"The most well-studied function of DNA methylation in eukaryotic cells is the transcriptional silencing of genes and transposons. More recent results showed that many eukaryotes methylate the bodies of genes as well and that this methylation correlates with transcriptional activity rather than repression. The purpose of gene body methylation remains mysterious, but is potentially related to the histone variant H2A.Z. Studies in plants and animals have shown that the genome-wide distributions of H2A.Z and DNA methylation are strikingly anticorrelated. Furthermore, we and other investigators have shown that this relationship is likely to be the result of an ancient but unknown mechanism by which DNA methylation prevents the incorporation of H2A.Z. Recently, we discovered strong correlations between the presence of H2A.Z within gene bodies, the degree to which a gene's expression varies across tissue types or environmental conditions, and transcriptional misregulation in an h2a.z mutant. We propose that one basal function of gene body methylation is the establishment of constitutive expression patterns within housekeeping genes by excluding H2A.Z from their bodies."}],"author":[{"first_name":"D.","full_name":"Coleman-Derr, D.","last_name":"Coleman-Derr"},{"orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","first_name":"Daniel","full_name":"Zilberman, Daniel","last_name":"Zilberman"}],"citation":{"mla":"Coleman-Derr, D., and Daniel Zilberman. “DNA Methylation, H2A.Z, and the Regulation of Constitutive Expression.” <i>Cold Spring Harbor Symposia on Quantitative Biology</i>, vol. 77, Cold Spring Harbor Laboratory Press, 2012, pp. 147–54, doi:<a href=\"https://doi.org/10.1101/sqb.2012.77.014944\">10.1101/sqb.2012.77.014944</a>.","ieee":"D. Coleman-Derr and D. Zilberman, “DNA methylation, H2A.Z, and the regulation of constitutive expression,” <i>Cold Spring Harbor Symposia on Quantitative Biology</i>, vol. 77. Cold Spring Harbor Laboratory Press, pp. 147–154, 2012.","chicago":"Coleman-Derr, D., and Daniel Zilberman. “DNA Methylation, H2A.Z, and the Regulation of Constitutive Expression.” <i>Cold Spring Harbor Symposia on Quantitative Biology</i>. Cold Spring Harbor Laboratory Press, 2012. <a href=\"https://doi.org/10.1101/sqb.2012.77.014944\">https://doi.org/10.1101/sqb.2012.77.014944</a>.","apa":"Coleman-Derr, D., &#38; Zilberman, D. (2012). DNA methylation, H2A.Z, and the regulation of constitutive expression. <i>Cold Spring Harbor Symposia on Quantitative Biology</i>. Cold Spring Harbor Laboratory Press. <a href=\"https://doi.org/10.1101/sqb.2012.77.014944\">https://doi.org/10.1101/sqb.2012.77.014944</a>","ista":"Coleman-Derr D, Zilberman D. 2012. DNA methylation, H2A.Z, and the regulation of constitutive expression. Cold Spring Harbor Symposia on Quantitative Biology. 77, 147–154.","short":"D. Coleman-Derr, D. Zilberman, Cold Spring Harbor Symposia on Quantitative Biology 77 (2012) 147–154.","ama":"Coleman-Derr D, Zilberman D. DNA methylation, H2A.Z, and the regulation of constitutive expression. <i>Cold Spring Harbor Symposia on Quantitative Biology</i>. 2012;77:147-154. doi:<a href=\"https://doi.org/10.1101/sqb.2012.77.014944\">10.1101/sqb.2012.77.014944</a>"},"publisher":"Cold Spring Harbor Laboratory Press","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","year":"2012","title":"DNA methylation, H2A.Z, and the regulation of constitutive expression","month":"12","date_published":"2012-12-18T00:00:00Z","day":"18","publication":"Cold Spring Harbor Symposia on Quantitative Biology","article_type":"review","intvolume":"        77","type":"journal_article"},{"date_updated":"2021-01-12T08:22:18Z","quality_controlled":0,"publication_status":"published","doi":"10.1103/PhysRevB.86.224409","_id":"966","oa":1,"abstract":[{"lang":"eng","text":"Motivated by recent experiments on Ba3NiSb2O 9, we investigate possible quantum spin liquid ground states for spin S=1 Heisenberg models on the triangular lattice. We use variational Monte Carlo techniques to calculate the energies of microscopic spin liquid wave functions where spin is represented by three flavors of fermionic spinon operators. These energies are compared with the energies of various competing three-sublattice ordered states. Our approach shows that the antiferromagnetic Heisenberg model with biquadratic term and single-ion anisotropy does not have a low-temperature spin liquid phase. However, for an SU(3)-invariant model with sufficiently strong ring-exchange terms, we find a paired chiral quantum spin liquid with a Fermi surface of deconfined spinons that is stable against all types of ordering patterns we considered. We discuss the physics of this exotic spin liquid state in relation to the recent experiment and suggest new ways to test this scenario."}],"publist_id":"6431","citation":{"apa":"Bieri, S., Serbyn, M., Senthil, T., &#38; Lee, P. (2012). Paired chiral spin liquid with a Fermi surface in S=1 model on the triangular lattice. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.86.224409\">https://doi.org/10.1103/PhysRevB.86.224409</a>","chicago":"Bieri, Samuel, Maksym Serbyn, Todadri Senthil, and Patrick Lee. “Paired Chiral Spin Liquid with a Fermi Surface in S=1 Model on the Triangular Lattice.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2012. <a href=\"https://doi.org/10.1103/PhysRevB.86.224409\">https://doi.org/10.1103/PhysRevB.86.224409</a>.","mla":"Bieri, Samuel, et al. “Paired Chiral Spin Liquid with a Fermi Surface in S=1 Model on the Triangular Lattice.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 86, no. 22, American Physical Society, 2012, doi:<a href=\"https://doi.org/10.1103/PhysRevB.86.224409\">10.1103/PhysRevB.86.224409</a>.","ieee":"S. Bieri, M. Serbyn, T. Senthil, and P. Lee, “Paired chiral spin liquid with a Fermi surface in S=1 model on the triangular lattice,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 86, no. 22. American Physical Society, 2012.","short":"S. Bieri, M. Serbyn, T. Senthil, P. Lee, Physical Review B - Condensed Matter and Materials Physics 86 (2012).","ama":"Bieri S, Serbyn M, Senthil T, Lee P. Paired chiral spin liquid with a Fermi surface in S=1 model on the triangular lattice. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2012;86(22). doi:<a href=\"https://doi.org/10.1103/PhysRevB.86.224409\">10.1103/PhysRevB.86.224409</a>","ista":"Bieri S, Serbyn M, Senthil T, Lee P. 2012. Paired chiral spin liquid with a Fermi surface in S=1 model on the triangular lattice. Physical Review B - Condensed Matter and Materials Physics. 86(22)."},"author":[{"first_name":"Samuel","last_name":"Bieri","full_name":"Bieri, Samuel"},{"last_name":"Serbyn","full_name":"Maksym Serbyn","first_name":"Maksym","orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Todadri","full_name":"Senthil, Todadri S","last_name":"Senthil"},{"first_name":"Patrick","full_name":"Lee, Patrick","last_name":"Lee"}],"publisher":"American Physical Society","status":"public","extern":1,"volume":86,"fulldoi":"https://doi.org/10.1103/PhysRevB.86.224409","year":"2012","month":"12","title":"Paired chiral spin liquid with a Fermi surface in S=1 model on the triangular lattice","date_published":"2012-12-13T00:00:00Z","acknowledgement":"We thank Kuang-Ting Chen, Rebecca Flint, Dmitri Ivanov, Z.-X. Liu, Tai-Kai Ng, Lara Thompson, Tamás Tóth, and Fa Wang for helpful discussions. T.S. is supported by NSF DMR 1005434. P.A.L. is supported by NSF DMR 1104498. S.B. acknowledges support from the Swiss National Science Foundation (SNSF).","issue":"22","date_created":"2018-12-11T11:49:27Z","publication":"Physical Review B - Condensed Matter and Materials Physics","day":"13","type":"journal_article","main_file_link":[{"url":"https://arxiv.org/abs/1208.3231","open_access":"1"}],"intvolume":"        86"},{"abstract":[{"lang":"eng","text":"Due to the omnipresent risk of epidemics, insect societies have evolved sophisticated disease defences at the individual and colony level. An intriguing yet little understood phenomenon is that social contact to pathogen-exposed individuals reduces susceptibility of previously naive nestmates to this pathogen. We tested whether such social immunisation in Lasius ants against the entomopathogenic fungus Metarhizium anisopliae is based on active upregulation of the immune system of nestmates following contact to an infectious individual or passive protection via transfer of immune effectors among group members—that is, active versus passive immunisation. We found no evidence for involvement of passive immunisation via transfer of antimicrobials among colony members. Instead, intensive allogrooming behaviour between naive and pathogen-exposed ants before fungal conidia firmly attached to their cuticle suggested passage of the pathogen from the exposed individuals to their nestmates. By tracing fluorescence-labelled conidia we indeed detected frequent pathogen transfer to the nestmates, where they caused low-level infections as revealed by growth of small numbers of fungal colony forming units from their dissected body content. These infections rarely led to death, but instead promoted an enhanced ability to inhibit fungal growth and an active upregulation of immune genes involved in antifungal defences (defensin and prophenoloxidase, PPO). Contrarily, there was no upregulation of the gene cathepsin L, which is associated with antibacterial and antiviral defences, and we found no increased antibacterial activity of nestmates of fungus-exposed ants. This indicates that social immunisation after fungal exposure is specific, similar to recent findings for individual-level immune priming in invertebrates. Epidemiological modeling further suggests that active social immunisation is adaptive, as it leads to faster elimination of the disease and lower death rates than passive immunisation. Interestingly, humans have also utilised the protective effect of low-level infections to fight smallpox by intentional transfer of low pathogen doses (“variolation” or “inoculation”)."}],"author":[{"id":"46528076-F248-11E8-B48F-1D18A9856A87","first_name":"Matthias","full_name":"Konrad, Matthias","last_name":"Konrad"},{"full_name":"Vyleta, Meghan","last_name":"Vyleta","first_name":"Meghan","id":"418901AA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Theis","full_name":"Theis, Fabian","first_name":"Fabian"},{"full_name":"Stock, Miriam","last_name":"Stock","first_name":"Miriam","id":"42462816-F248-11E8-B48F-1D18A9856A87"},{"id":"E60F29C6-E9AE-11E9-AF6E-D190C7302F38","first_name":"Martina","full_name":"Klatt, Martina","last_name":"Klatt"},{"last_name":"Drescher","full_name":"Drescher, Verena","first_name":"Verena"},{"full_name":"Marr, Carsten","last_name":"Marr","first_name":"Carsten"},{"full_name":"Ugelvig, Line V","last_name":"Ugelvig","orcid":"0000-0003-1832-8883","id":"3DC97C8E-F248-11E8-B48F-1D18A9856A87","first_name":"Line V"},{"orcid":"0000-0002-2193-3868","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","first_name":"Sylvia","full_name":"Cremer, Sylvia","last_name":"Cremer"}],"department":[{"_id":"SyCr"}],"citation":{"ista":"Konrad M, Vyleta M, Theis F, Stock M, Klatt M, Drescher V, Marr C, Ugelvig LV, Cremer S. 2012. Data from: Social transfer of pathogenic fungus promotes active immunisation in ant colonies, Dryad, <a href=\"https://doi.org/10.5061/dryad.sv37s\">10.5061/dryad.sv37s</a>.","short":"M. Konrad, M. Vyleta, F. Theis, M. Stock, M. Klatt, V. Drescher, C. Marr, L.V. Ugelvig, S. Cremer, (2012).","ama":"Konrad M, Vyleta M, Theis F, et al. Data from: Social transfer of pathogenic fungus promotes active immunisation in ant colonies. 2012. doi:<a href=\"https://doi.org/10.5061/dryad.sv37s\">10.5061/dryad.sv37s</a>","chicago":"Konrad, Matthias, Meghan Vyleta, Fabian Theis, Miriam Stock, Martina Klatt, Verena Drescher, Carsten Marr, Line V Ugelvig, and Sylvia Cremer. “Data from: Social Transfer of Pathogenic Fungus Promotes Active Immunisation in Ant Colonies.” Dryad, 2012. <a href=\"https://doi.org/10.5061/dryad.sv37s\">https://doi.org/10.5061/dryad.sv37s</a>.","mla":"Konrad, Matthias, et al. <i>Data from: Social Transfer of Pathogenic Fungus Promotes Active Immunisation in Ant Colonies</i>. Dryad, 2012, doi:<a href=\"https://doi.org/10.5061/dryad.sv37s\">10.5061/dryad.sv37s</a>.","ieee":"M. Konrad <i>et al.</i>, “Data from: Social transfer of pathogenic fungus promotes active immunisation in ant colonies.” Dryad, 2012.","apa":"Konrad, M., Vyleta, M., Theis, F., Stock, M., Klatt, M., Drescher, V., … Cremer, S. (2012). Data from: Social transfer of pathogenic fungus promotes active immunisation in ant colonies. Dryad. <a href=\"https://doi.org/10.5061/dryad.sv37s\">https://doi.org/10.5061/dryad.sv37s</a>"},"related_material":{"record":[{"id":"3242","status":"public","relation":"used_in_publication"}]},"status":"public","publisher":"Dryad","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_updated":"2025-09-30T07:50:00Z","doi":"10.5061/dryad.sv37s","_id":"9755","article_processing_charge":"No","oa":1,"day":"27","date_created":"2021-07-30T08:39:13Z","oa_version":"Published Version","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.sv37s"}],"type":"research_data_reference","year":"2012","fulldoi":"https://doi.org/10.5061/dryad.sv37s","month":"09","title":"Data from: Social transfer of pathogenic fungus promotes active immunisation in ant colonies","date_published":"2012-09-27T00:00:00Z"},{"_id":"9757","doi":"10.5061/dryad.61649","oa":1,"article_processing_charge":"No","date_updated":"2025-09-30T08:15:49Z","publisher":"Dryad","status":"public","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","abstract":[{"lang":"eng","text":"To fight infectious diseases, host immune defences are employed at multiple levels. Sanitary behaviour, such as pathogen avoidance and removal, acts as a first line of defence to prevent infection [1] before activation of the physiological immune system. Insect societies have evolved a wide range of collective hygiene measures and intensive health care towards pathogen-exposed group members [2]. One of the most common behaviours is allogrooming, in which nestmates remove infectious particles from the body surfaces of exposed individuals [3]. Here we show that, in invasive garden ants, grooming of fungus-exposed brood is effective beyond the sheer mechanical removal of fungal conidiospores as it also includes chemical disinfection through the application of poison produced by the ants themselves. Formic acid is the main active component of the poison. It inhibits fungal growth of conidiospores remaining on the brood surface after grooming and also those collected in the mouth of the grooming ant. This dual function is achieved by uptake of the poison droplet into the mouth through acidopore self-grooming and subsequent application onto the infectious brood via brood grooming. This extraordinary behaviour extends current understanding of grooming and the establishment of social immunity in insect societies."}],"citation":{"short":"S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L.V. Ugelvig, S. Cremer, (2012).","ama":"Tragust S, Mitteregger B, Barone V, Konrad M, Ugelvig LV, Cremer S. Data from: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison. 2012. doi:<a href=\"https://doi.org/10.5061/dryad.61649\">10.5061/dryad.61649</a>","ista":"Tragust S, Mitteregger B, Barone V, Konrad M, Ugelvig LV, Cremer S. 2012. Data from: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison, Dryad, <a href=\"https://doi.org/10.5061/dryad.61649\">10.5061/dryad.61649</a>.","apa":"Tragust, S., Mitteregger, B., Barone, V., Konrad, M., Ugelvig, L. V., &#38; Cremer, S. (2012). Data from: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison. Dryad. <a href=\"https://doi.org/10.5061/dryad.61649\">https://doi.org/10.5061/dryad.61649</a>","ieee":"S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L. V. Ugelvig, and S. Cremer, “Data from: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison.” Dryad, 2012.","chicago":"Tragust, Simon, Barbara Mitteregger, Vanessa Barone, Matthias Konrad, Line V Ugelvig, and Sylvia Cremer. “Data from: Ants Disinfect Fungus-Exposed Brood by Oral Uptake and Spread of Their Poison.” Dryad, 2012. <a href=\"https://doi.org/10.5061/dryad.61649\">https://doi.org/10.5061/dryad.61649</a>.","mla":"Tragust, Simon, et al. <i>Data from: Ants Disinfect Fungus-Exposed Brood by Oral Uptake and Spread of Their Poison</i>. Dryad, 2012, doi:<a href=\"https://doi.org/10.5061/dryad.61649\">10.5061/dryad.61649</a>."},"related_material":{"record":[{"relation":"used_in_publication","id":"2926","status":"public"}]},"department":[{"_id":"SyCr"}],"author":[{"last_name":"Tragust","full_name":"Tragust, Simon","id":"35A7A418-F248-11E8-B48F-1D18A9856A87","first_name":"Simon"},{"full_name":"Mitteregger, Barbara","last_name":"Mitteregger","first_name":"Barbara","id":"479DDAAC-E9CD-11E9-9B5F-82450873F7A1"},{"id":"419EECCC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2676-3367","first_name":"Vanessa","full_name":"Barone, Vanessa","last_name":"Barone"},{"full_name":"Konrad, Matthias","last_name":"Konrad","id":"46528076-F248-11E8-B48F-1D18A9856A87","first_name":"Matthias"},{"orcid":"0000-0003-1832-8883","id":"3DC97C8E-F248-11E8-B48F-1D18A9856A87","first_name":"Line V","full_name":"Ugelvig, Line V","last_name":"Ugelvig"},{"last_name":"Cremer","full_name":"Cremer, Sylvia","orcid":"0000-0002-2193-3868","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","first_name":"Sylvia"}],"title":"Data from: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison","month":"12","date_published":"2012-12-14T00:00:00Z","fulldoi":"https://doi.org/10.5061/dryad.61649","year":"2012","oa_version":"Published Version","type":"research_data_reference","main_file_link":[{"url":"https://doi.org/10.5061/dryad.61649","open_access":"1"}],"date_created":"2021-07-30T12:31:31Z","day":"14"},{"date_created":"2021-07-30T12:36:39Z","day":"14","oa_version":"Published Version","type":"research_data_reference","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.274b1"}],"fulldoi":"https://doi.org/10.5061/dryad.274b1","year":"2012","month":"11","title":"Data from: Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates","date_published":"2012-11-14T00:00:00Z","abstract":[{"lang":"eng","text":"We propose a two-step procedure for estimating multiple migration rates in an approximate Bayesian computation (ABC) framework, accounting for global nuisance parameters. The approach is not limited to migration, but generally of interest for inference problems with multiple parameters and a modular structure (e.g. independent sets of demes or loci). We condition on a known, but complex demographic model of a spatially subdivided population, motivated by the reintroduction of Alpine ibex (Capra ibex) into Switzerland. In the first step, the global parameters ancestral mutation rate and male mating skew have been estimated for the whole population in Aeschbacher et al. (Genetics 2012; 192: 1027). In the second step, we estimate in this study the migration rates independently for clusters of demes putatively connected by migration. For large clusters (many migration rates), ABC faces the problem of too many summary statistics. We therefore assess by simulation if estimation per pair of demes is a valid alternative. We find that the trade-off between reduced dimensionality for the pairwise estimation on the one hand and lower accuracy due to the assumption of pairwise independence on the other depends on the number of migration rates to be inferred: the accuracy of the pairwise approach increases with the number of parameters, relative to the joint estimation approach. To distinguish between low and zero migration, we perform ABC-type model comparison between a model with migration and one without. Applying the approach to microsatellite data from Alpine ibex, we find no evidence for substantial gene flow via migration, except for one pair of demes in one direction."}],"related_material":{"record":[{"status":"public","id":"2944","relation":"used_in_publication"}]},"citation":{"mla":"Aeschbacher, Simon, et al. <i>Data from: Approximate Bayesian Computation for Modular Inference Problems with Many Parameters: The Example of Migration Rates</i>. Dryad, 2012, doi:<a href=\"https://doi.org/10.5061/dryad.274b1\">10.5061/dryad.274b1</a>.","ieee":"S. Aeschbacher, A. Futschik, and M. Beaumont, “Data from: Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates.” Dryad, 2012.","chicago":"Aeschbacher, Simon, Andreas Futschik, and Mark Beaumont. “Data from: Approximate Bayesian Computation for Modular Inference Problems with Many Parameters: The Example of Migration Rates.” Dryad, 2012. <a href=\"https://doi.org/10.5061/dryad.274b1\">https://doi.org/10.5061/dryad.274b1</a>.","apa":"Aeschbacher, S., Futschik, A., &#38; Beaumont, M. (2012). Data from: Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates. Dryad. <a href=\"https://doi.org/10.5061/dryad.274b1\">https://doi.org/10.5061/dryad.274b1</a>","ista":"Aeschbacher S, Futschik A, Beaumont M. 2012. Data from: Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates, Dryad, <a href=\"https://doi.org/10.5061/dryad.274b1\">10.5061/dryad.274b1</a>.","ama":"Aeschbacher S, Futschik A, Beaumont M. Data from: Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates. 2012. doi:<a href=\"https://doi.org/10.5061/dryad.274b1\">10.5061/dryad.274b1</a>","short":"S. Aeschbacher, A. Futschik, M. Beaumont, (2012)."},"author":[{"id":"2D35326E-F248-11E8-B48F-1D18A9856A87","first_name":"Simon","last_name":"Aeschbacher","full_name":"Aeschbacher, Simon"},{"first_name":"Andreas","full_name":"Futschik, Andreas","last_name":"Futschik"},{"last_name":"Beaumont","full_name":"Beaumont, Mark","first_name":"Mark"}],"department":[{"_id":"NiBa"}],"publisher":"Dryad","status":"public","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","date_updated":"2025-09-29T13:25:35Z","_id":"9758","doi":"10.5061/dryad.274b1","article_processing_charge":"No","oa":1},{"issue":"1","ddc":["500"],"publication":"Journal of Mathematical Physics, Analysis, Geometry","day":"01","type":"journal_article","article_type":"original","intvolume":"         8","year":"2012","title":"Elementary solutions of the Bernstein problem on two intervals","month":"01","date_published":"2012-01-01T00:00:00Z","acknowledgement":"This work is supported by the Austrian Science Fund (FWF), Project P22025-N18.\r\n","abstract":[{"lang":"eng","text":"First we note that the best polynomial approximation to vertical bar x vertical bar on the set, which consists of an interval on the positive half-axis and a point on the negative half-axis, can be given by means of the classical Chebyshev polynomials. Then we explore the cases when a solution of the related problem on two intervals can be given in elementary functions."}],"corr_author":"1","citation":{"ista":"Pausinger F. 2012. Elementary solutions of the Bernstein problem on two intervals. Journal of Mathematical Physics, Analysis, Geometry. 8(1), 63–78.","ama":"Pausinger F. Elementary solutions of the Bernstein problem on two intervals. <i>Journal of Mathematical Physics, Analysis, Geometry</i>. 2012;8(1):63-78.","short":"F. Pausinger, Journal of Mathematical Physics, Analysis, Geometry 8 (2012) 63–78.","mla":"Pausinger, Florian. “Elementary Solutions of the Bernstein Problem on Two Intervals.” <i>Journal of Mathematical Physics, Analysis, Geometry</i>, vol. 8, no. 1, B. Verkin Institute for Low Temperature Physics and Engineering, 2012, pp. 63–78.","ieee":"F. Pausinger, “Elementary solutions of the Bernstein problem on two intervals,” <i>Journal of Mathematical Physics, Analysis, Geometry</i>, vol. 8, no. 1. B. Verkin Institute for Low Temperature Physics and Engineering, pp. 63–78, 2012.","chicago":"Pausinger, Florian. “Elementary Solutions of the Bernstein Problem on Two Intervals.” <i>Journal of Mathematical Physics, Analysis, Geometry</i>. B. Verkin Institute for Low Temperature Physics and Engineering, 2012.","apa":"Pausinger, F. (2012). Elementary solutions of the Bernstein problem on two intervals. <i>Journal of Mathematical Physics, Analysis, Geometry</i>. B. Verkin Institute for Low Temperature Physics and Engineering."},"author":[{"last_name":"Pausinger","full_name":"Pausinger, Florian","first_name":"Florian","id":"2A77D7A2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8379-3768"}],"publisher":"B. Verkin Institute for Low Temperature Physics and Engineering","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","publication_status":"published","publication_identifier":{"issn":["1812-9471"]},"oa":1,"isi":1,"date_created":"2019-06-27T08:16:56Z","oa_version":"Published Version","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://www.mathnet.ru/eng/jmag525"}],"volume":8,"external_id":{"isi":["000301173600004"]},"department":[{"_id":"HeEd"}],"OA_place":"publisher","status":"public","scopus_import":"1","date_updated":"2026-06-18T19:08:51Z","page":"63-78","_id":"6588","article_processing_charge":"No"},{"fulldoi":"https://doi.org/10.1109/icassp.2012.6288524","year":"2012","date_published":"2012-07-31T00:00:00Z","title":"A cooperative approach for amplify-and-forward differential transmitted reference IR-UWB relay systems","month":"07","publication":"2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)","date_created":"2019-07-31T09:14:48Z","day":"31","type":"conference","oa_version":"None","language":[{"iso":"eng"}],"publication_status":"published","page":"2905-2908","date_updated":"2021-01-12T08:08:49Z","quality_controlled":"1","conference":{"name":"ICASSP: International Conference on Acoustics, Speech and Signal Processing","location":"Kyoto, Japan","start_date":"2012-03-25","end_date":"2012-03-30"},"doi":"10.1109/icassp.2012.6288524","_id":"6746","publication_identifier":{"issn":["1520-6149"]},"citation":{"apa":"Mondelli, M., Zhou, Q., Ma, X., &#38; Lottici, V. (2012). A cooperative approach for amplify-and-forward differential transmitted reference IR-UWB relay systems. In <i>2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)</i> (pp. 2905–2908). Kyoto, Japan: IEEE. <a href=\"https://doi.org/10.1109/icassp.2012.6288524\">https://doi.org/10.1109/icassp.2012.6288524</a>","chicago":"Mondelli, Marco, Qi Zhou, Xiaoli Ma, and Vincenzo Lottici. “A Cooperative Approach for Amplify-and-Forward Differential Transmitted Reference IR-UWB Relay Systems.” In <i>2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)</i>, 2905–8. IEEE, 2012. <a href=\"https://doi.org/10.1109/icassp.2012.6288524\">https://doi.org/10.1109/icassp.2012.6288524</a>.","ieee":"M. Mondelli, Q. Zhou, X. Ma, and V. Lottici, “A cooperative approach for amplify-and-forward differential transmitted reference IR-UWB relay systems,” in <i>2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)</i>, Kyoto, Japan, 2012, pp. 2905–2908.","mla":"Mondelli, Marco, et al. “A Cooperative Approach for Amplify-and-Forward Differential Transmitted Reference IR-UWB Relay Systems.” <i>2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)</i>, IEEE, 2012, pp. 2905–08, doi:<a href=\"https://doi.org/10.1109/icassp.2012.6288524\">10.1109/icassp.2012.6288524</a>.","ama":"Mondelli M, Zhou Q, Ma X, Lottici V. A cooperative approach for amplify-and-forward differential transmitted reference IR-UWB relay systems. In: <i>2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)</i>. IEEE; 2012:2905-2908. doi:<a href=\"https://doi.org/10.1109/icassp.2012.6288524\">10.1109/icassp.2012.6288524</a>","short":"M. Mondelli, Q. Zhou, X. Ma, V. Lottici, in:, 2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), IEEE, 2012, pp. 2905–2908.","ista":"Mondelli M, Zhou Q, Ma X, Lottici V. 2012. A cooperative approach for amplify-and-forward differential transmitted reference IR-UWB relay systems. 2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP). ICASSP: International Conference on Acoustics, Speech and Signal Processing, 2905–2908."},"author":[{"id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco","orcid":"0000-0002-3242-7020","full_name":"Mondelli, Marco","last_name":"Mondelli"},{"first_name":"Qi","full_name":"Zhou, Qi","last_name":"Zhou"},{"last_name":"Ma","full_name":"Ma, Xiaoli","first_name":"Xiaoli"},{"full_name":"Lottici, Vincenzo","last_name":"Lottici","first_name":"Vincenzo"}],"abstract":[{"text":"This paper proposes a novel cooperative approach for two-hop amplify-and-forward (A&F) relaying that exploits both the signal forwarded by the relay and the one directly transmitted by the source in impulse-radio ultra-wideband (IR-UWB) systems. Specifically, we focus on a non-coherent setup employing a double-differential encoding scheme at the source node and a single differential demodulation at the relay and destination. The log-likelihood ratio based decision rule is derived at the destination node. A semi-analytical power allocation strategy is presented by evaluating a closed-form expression for the effective signal to noise ratio (SNR) at the destination, which is maximized by exhaustive search. Numerical simulations show that the proposed system outperforms both the direct transmission with single differential encoding and the non-cooperative multi-hop approach in different scenarios.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","publisher":"IEEE","status":"public"},{"status":"public","publisher":"Springer Nature","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","abstract":[{"lang":"eng","text":"The Seebeck coefficients, electrical resistivities, total thermal conductivities, and magnetization are reported for temperatures between 5 and 350 K for n-type Bi0.88Sb0.12 nano-composite alloys made by Ho-doping at the 0, 1, and 3 % atomic levels. The alloys were prepared using a dc hot-pressing method, and are shown to be single phase for both Ho contents with grain sizes on the average of 900 nm. We find the parent compound has a maximum of ZT = 0.28 at 231 K, while doping 1 % Ho increases the maximum ZT to 0.31 at 221 K and the 3 % doped sample suppresses the maximum ZT = 0.24 at a temperature of 260 K."}],"author":[{"last_name":"Lukas","full_name":"Lukas, K. C.","first_name":"K. C."},{"first_name":"G.","last_name":"Joshi","full_name":"Joshi, G."},{"first_name":"Kimberly A","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","orcid":"0000-0001-9760-3147","last_name":"Modic","full_name":"Modic, Kimberly A"},{"first_name":"Z. F.","last_name":"Ren","full_name":"Ren, Z. F."},{"full_name":"Opeil, C. P.","last_name":"Opeil","first_name":"C. P."}],"citation":{"apa":"Lukas, K. C., Joshi, G., Modic, K. A., Ren, Z. F., &#38; Opeil, C. P. (2012). Thermoelectric properties of Ho-doped Bi0.88Sb0.12. <i>Journal of Materials Science</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10853-012-6463-6\">https://doi.org/10.1007/s10853-012-6463-6</a>","mla":"Lukas, K. C., et al. “Thermoelectric Properties of Ho-Doped Bi0.88Sb0.12.” <i>Journal of Materials Science</i>, vol. 47, no. 15, Springer Nature, 2012, pp. 5729–34, doi:<a href=\"https://doi.org/10.1007/s10853-012-6463-6\">10.1007/s10853-012-6463-6</a>.","chicago":"Lukas, K. C., G. Joshi, Kimberly A Modic, Z. F. Ren, and C. P. Opeil. “Thermoelectric Properties of Ho-Doped Bi0.88Sb0.12.” <i>Journal of Materials Science</i>. Springer Nature, 2012. <a href=\"https://doi.org/10.1007/s10853-012-6463-6\">https://doi.org/10.1007/s10853-012-6463-6</a>.","ieee":"K. C. Lukas, G. Joshi, K. A. Modic, Z. F. Ren, and C. P. Opeil, “Thermoelectric properties of Ho-doped Bi0.88Sb0.12,” <i>Journal of Materials Science</i>, vol. 47, no. 15. Springer Nature, pp. 5729–5734, 2012.","short":"K.C. Lukas, G. Joshi, K.A. Modic, Z.F. Ren, C.P. Opeil, Journal of Materials Science 47 (2012) 5729–5734.","ama":"Lukas KC, Joshi G, Modic KA, Ren ZF, Opeil CP. Thermoelectric properties of Ho-doped Bi0.88Sb0.12. <i>Journal of Materials Science</i>. 2012;47(15):5729-5734. doi:<a href=\"https://doi.org/10.1007/s10853-012-6463-6\">10.1007/s10853-012-6463-6</a>","ista":"Lukas KC, Joshi G, Modic KA, Ren ZF, Opeil CP. 2012. Thermoelectric properties of Ho-doped Bi0.88Sb0.12. Journal of Materials Science. 47(15), 5729–5734."},"publication_identifier":{"eissn":["1573-4803"],"issn":["0022-2461"]},"doi":"10.1007/s10853-012-6463-6","_id":"7074","article_processing_charge":"No","quality_controlled":"1","date_updated":"2021-01-12T08:11:43Z","page":"5729-5734","publication_status":"published","language":[{"iso":"eng"}],"oa_version":"None","article_type":"original","intvolume":"        47","type":"journal_article","issue":"15","day":"01","publication":"Journal of Materials Science","date_created":"2019-11-19T13:36:54Z","month":"08","title":"Thermoelectric properties of Ho-doped Bi0.88Sb0.12","date_published":"2012-08-01T00:00:00Z","volume":47,"fulldoi":"https://doi.org/10.1007/s10853-012-6463-6","year":"2012"},{"citation":{"apa":"Ottakam Thotiyl, M. M., Freunberger, S. A., Peng, Z., &#38; Bruce, P. G. (2012). The carbon electrode in nonaqueous Li–O2 cells. <i>Journal of the American Chemical Society</i>. ACS. <a href=\"https://doi.org/10.1021/ja310258x\">https://doi.org/10.1021/ja310258x</a>","chicago":"Ottakam Thotiyl, Muhammed M., Stefan Alexander Freunberger, Zhangquan Peng, and Peter G. Bruce. “The Carbon Electrode in Nonaqueous Li–O2 Cells.” <i>Journal of the American Chemical Society</i>. ACS, 2012. <a href=\"https://doi.org/10.1021/ja310258x\">https://doi.org/10.1021/ja310258x</a>.","mla":"Ottakam Thotiyl, Muhammed M., et al. “The Carbon Electrode in Nonaqueous Li–O2 Cells.” <i>Journal of the American Chemical Society</i>, vol. 135, no. 1, ACS, 2012, pp. 494–500, doi:<a href=\"https://doi.org/10.1021/ja310258x\">10.1021/ja310258x</a>.","ieee":"M. M. Ottakam Thotiyl, S. A. Freunberger, Z. Peng, and P. G. Bruce, “The carbon electrode in nonaqueous Li–O2 cells,” <i>Journal of the American Chemical Society</i>, vol. 135, no. 1. ACS, pp. 494–500, 2012.","ama":"Ottakam Thotiyl MM, Freunberger SA, Peng Z, Bruce PG. The carbon electrode in nonaqueous Li–O2 cells. <i>Journal of the American Chemical Society</i>. 2012;135(1):494-500. doi:<a href=\"https://doi.org/10.1021/ja310258x\">10.1021/ja310258x</a>","short":"M.M. Ottakam Thotiyl, S.A. Freunberger, Z. Peng, P.G. Bruce, Journal of the American Chemical Society 135 (2012) 494–500.","ista":"Ottakam Thotiyl MM, Freunberger SA, Peng Z, Bruce PG. 2012. The carbon electrode in nonaqueous Li–O2 cells. Journal of the American Chemical Society. 135(1), 494–500."},"author":[{"full_name":"Ottakam Thotiyl, Muhammed M.","last_name":"Ottakam Thotiyl","first_name":"Muhammed M."},{"full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","orcid":"0000-0003-2902-5319","first_name":"Stefan Alexander"},{"first_name":"Zhangquan","full_name":"Peng, Zhangquan","last_name":"Peng"},{"full_name":"Bruce, Peter G.","last_name":"Bruce","first_name":"Peter G."}],"abstract":[{"lang":"eng","text":"Carbon has been used widely as the basis of porous cathodes for nonaqueous Li–O2 cells. However, the stability of carbon and the effect of carbon on electrolyte decomposition in such cells are complex and depend on the hydrophobicity/hydrophilicity of the carbon surface. Analyzing carbon cathodes, cycled in Li–O2 cells between 2 and 4 V, using acid treatment and Fenton’s reagent, and combined with differential electrochemical mass spectrometry and FTIR, demonstrates the following: Carbon is relatively stable below 3.5 V (vs Li/Li+) on discharge or charge, especially so for hydrophobic carbon, but is unstable on charging above 3.5 V (in the presence of Li2O2), oxidatively decomposing to form Li2CO3. Direct chemical reaction with Li2O2 accounts for only a small proportion of the total carbon decomposition on cycling. Carbon promotes electrolyte decomposition during discharge and charge in a Li–O2 cell, giving rise to Li2CO3 and Li carboxylates (DMSO and tetraglyme electrolytes). The Li2CO3 and Li carboxylates present at the end of discharge and those that form on charge result in polarization on the subsequent charge. Li2CO3 (derived from carbon and from the electrolyte) as well as the Li carboxylates (derived from the electrolyte) decompose and form on charging. Oxidation of Li2CO3 on charging to ∼4 V is incomplete; Li2CO3 accumulates on cycling resulting in electrode passivation and capacity fading. Hydrophilic carbon is less stable and more catalytically active toward electrolyte decomposition than carbon with a hydrophobic surface. If the Li–O2 cell could be charged at or below 3.5 V, then carbon may be relatively stable, however, its ability to promote electrolyte decomposition, presenting problems for its use in a practical Li–O2 battery. The results emphasize that stable cycling of Li2O2 at the cathode in a Li–O2 cell depends on the synergy between electrolyte and electrode; the stability of the electrode and the electrolyte cannot be considered in isolation."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","publisher":"ACS","status":"public","publication_status":"published","page":"494-500","date_updated":"2021-01-12T08:12:56Z","quality_controlled":"1","article_processing_charge":"No","doi":"10.1021/ja310258x","_id":"7308","publication_identifier":{"issn":["0002-7863","1520-5126"]},"date_created":"2020-01-15T12:18:57Z","publication":"Journal of the American Chemical Society","day":"28","issue":"1","type":"journal_article","article_type":"original","intvolume":"       135","oa_version":"None","language":[{"iso":"eng"}],"year":"2012","fulldoi":"https://doi.org/10.1021/ja310258x","volume":135,"date_published":"2012-11-28T00:00:00Z","month":"11","title":"The carbon electrode in nonaqueous Li–O2 cells"},{"abstract":[{"lang":"eng","text":"Energy‐storage technologies, including electrical double‐layer capacitors and rechargeable batteries, have attracted significant attention for applications in portable electronic devices, electric vehicles, bulk electricity storage at power stations, and “load leveling” of renewable sources, such as solar energy and wind power. Transforming lithium batteries and electric double‐layer capacitors requires a step change in the science underpinning these devices, including the discovery of new materials, new electrochemistry, and an increased understanding of the processes on which the devices depend. The Review will consider some of the current scientific issues underpinning lithium batteries and electric double‐layer capacitors."}],"citation":{"ista":"Choi N-S, Chen Z, Freunberger SA, Ji X, Sun Y-K, Amine K, Yushin G, Nazar LF, Cho J, Bruce PG. 2012. Challenges facing Lithium batteries and electrical double-layer capacitors. Angewandte Chemie International Edition. 51(40), 9994–10024.","short":"N.-S. Choi, Z. Chen, S.A. Freunberger, X. Ji, Y.-K. Sun, K. Amine, G. Yushin, L.F. Nazar, J. Cho, P.G. Bruce, Angewandte Chemie International Edition 51 (2012) 9994–10024.","ama":"Choi N-S, Chen Z, Freunberger SA, et al. Challenges facing Lithium batteries and electrical double-layer capacitors. <i>Angewandte Chemie International Edition</i>. 2012;51(40):9994-10024. doi:<a href=\"https://doi.org/10.1002/anie.201201429\">10.1002/anie.201201429</a>","mla":"Choi, Nam-Soon, et al. “Challenges Facing Lithium Batteries and Electrical Double-Layer Capacitors.” <i>Angewandte Chemie International Edition</i>, vol. 51, no. 40, Wiley, 2012, pp. 9994–10024, doi:<a href=\"https://doi.org/10.1002/anie.201201429\">10.1002/anie.201201429</a>.","chicago":"Choi, Nam-Soon, Zonghai Chen, Stefan Alexander Freunberger, Xiulei Ji, Yang-Kook Sun, Khalil Amine, Gleb Yushin, Linda F. Nazar, Jaephil Cho, and Peter G. Bruce. “Challenges Facing Lithium Batteries and Electrical Double-Layer Capacitors.” <i>Angewandte Chemie International Edition</i>. Wiley, 2012. <a href=\"https://doi.org/10.1002/anie.201201429\">https://doi.org/10.1002/anie.201201429</a>.","ieee":"N.-S. Choi <i>et al.</i>, “Challenges facing Lithium batteries and electrical double-layer capacitors,” <i>Angewandte Chemie International Edition</i>, vol. 51, no. 40. Wiley, pp. 9994–10024, 2012.","apa":"Choi, N.-S., Chen, Z., Freunberger, S. A., Ji, X., Sun, Y.-K., Amine, K., … Bruce, P. G. (2012). Challenges facing Lithium batteries and electrical double-layer capacitors. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.201201429\">https://doi.org/10.1002/anie.201201429</a>"},"author":[{"first_name":"Nam-Soon","last_name":"Choi","full_name":"Choi, Nam-Soon"},{"first_name":"Zonghai","full_name":"Chen, Zonghai","last_name":"Chen"},{"full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","first_name":"Stefan Alexander","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","orcid":"0000-0003-2902-5319"},{"first_name":"Xiulei","last_name":"Ji","full_name":"Ji, Xiulei"},{"first_name":"Yang-Kook","full_name":"Sun, Yang-Kook","last_name":"Sun"},{"first_name":"Khalil","last_name":"Amine","full_name":"Amine, Khalil"},{"first_name":"Gleb","full_name":"Yushin, Gleb","last_name":"Yushin"},{"first_name":"Linda F.","last_name":"Nazar","full_name":"Nazar, Linda F."},{"first_name":"Jaephil","last_name":"Cho","full_name":"Cho, Jaephil"},{"last_name":"Bruce","full_name":"Bruce, Peter G.","first_name":"Peter G."}],"publisher":"Wiley","status":"public","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2021-01-12T08:12:56Z","quality_controlled":"1","publication_status":"published","page":"9994-10024","doi":"10.1002/anie.201201429","_id":"7309","publication_identifier":{"issn":["1433-7851"]},"article_processing_charge":"No","issue":"40","date_created":"2020-01-15T12:19:11Z","publication":"Angewandte Chemie International Edition","day":"01","oa_version":"None","language":[{"iso":"eng"}],"type":"journal_article","intvolume":"        51","article_type":"original","volume":51,"year":"2012","fulldoi":"https://doi.org/10.1002/anie.201201429","month":"10","title":"Challenges facing Lithium batteries and electrical double-layer capacitors","date_published":"2012-10-01T00:00:00Z"},{"issue":"6094","day":"03","date_created":"2020-01-15T12:19:23Z","publication":"Science","language":[{"iso":"eng"}],"oa_version":"None","article_type":"original","intvolume":"       337","type":"journal_article","volume":337,"year":"2012","fulldoi":"https://doi.org/10.1126/science.1223985","month":"08","title":"A reversible and higher-rate Li-O2 battery","date_published":"2012-08-03T00:00:00Z","abstract":[{"text":"The rechargeable nonaqueous lithium-air (Li-O2) battery is receiving a great deal of interest because, theoretically, its specific energy far exceeds the best that can be achieved with lithium-ion cells. Operation of the rechargeable Li-O2 battery depends critically on repeated and highly reversible formation/decomposition of lithium peroxide (Li2O2) at the cathode upon cycling. Here, we show that this process is possible with the use of a dimethyl sulfoxide electrolyte and a porous gold electrode (95% capacity retention from cycles 1 to 100), whereas previously only partial Li2O2 formation/decomposition and limited cycling could occur. Furthermore, we present data indicating that the kinetics of Li2O2 oxidation on charge is approximately 10 times faster than on carbon electrodes.","lang":"eng"}],"author":[{"full_name":"Peng, Z.","last_name":"Peng","first_name":"Z."},{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","orcid":"0000-0003-2902-5319","first_name":"Stefan Alexander","full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger"},{"first_name":"Y.","last_name":"Chen","full_name":"Chen, Y."},{"first_name":"P. G.","full_name":"Bruce, P. G.","last_name":"Bruce"}],"citation":{"ista":"Peng Z, Freunberger SA, Chen Y, Bruce PG. 2012. A reversible and higher-rate Li-O2 battery. Science. 337(6094), 563–566.","short":"Z. Peng, S.A. Freunberger, Y. Chen, P.G. Bruce, Science 337 (2012) 563–566.","ama":"Peng Z, Freunberger SA, Chen Y, Bruce PG. A reversible and higher-rate Li-O2 battery. <i>Science</i>. 2012;337(6094):563-566. doi:<a href=\"https://doi.org/10.1126/science.1223985\">10.1126/science.1223985</a>","mla":"Peng, Z., et al. “A Reversible and Higher-Rate Li-O2 Battery.” <i>Science</i>, vol. 337, no. 6094, AAAS, 2012, pp. 563–66, doi:<a href=\"https://doi.org/10.1126/science.1223985\">10.1126/science.1223985</a>.","chicago":"Peng, Z., Stefan Alexander Freunberger, Y. Chen, and P. G. Bruce. “A Reversible and Higher-Rate Li-O2 Battery.” <i>Science</i>. AAAS, 2012. <a href=\"https://doi.org/10.1126/science.1223985\">https://doi.org/10.1126/science.1223985</a>.","ieee":"Z. Peng, S. A. Freunberger, Y. Chen, and P. G. Bruce, “A reversible and higher-rate Li-O2 battery,” <i>Science</i>, vol. 337, no. 6094. AAAS, pp. 563–566, 2012.","apa":"Peng, Z., Freunberger, S. A., Chen, Y., &#38; Bruce, P. G. (2012). A reversible and higher-rate Li-O2 battery. <i>Science</i>. AAAS. <a href=\"https://doi.org/10.1126/science.1223985\">https://doi.org/10.1126/science.1223985</a>"},"status":"public","publisher":"AAAS","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","date_updated":"2021-01-12T08:12:57Z","page":"563-566","publication_status":"published","publication_identifier":{"issn":["0036-8075","1095-9203"]},"_id":"7310","doi":"10.1126/science.1223985","article_processing_charge":"No"},{"oa_version":"None","language":[{"iso":"eng"}],"type":"journal_article","intvolume":"       134","article_type":"original","issue":"18","date_created":"2020-01-15T12:19:36Z","publication":"Journal of the American Chemical Society","day":"19","month":"04","title":"Li–O2 battery with a dimethylformamide electrolyte","date_published":"2012-04-19T00:00:00Z","volume":134,"fulldoi":"https://doi.org/10.1021/ja302178w","year":"2012","publisher":"ACS","status":"public","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"Stability of the electrolyte toward reduced oxygen species generated at the cathode is a crucial challenge for the rechargeable nonaqueous Li–O2 battery. Here, we investigate dimethylformamide as the basis of an electrolyte. Although reactions at the O2 cathode on the first discharge–charge cycle are dominated by reversible Li2O2 formation/decomposition, there is also electrolyte decomposition, which increases on cycling. The products of decomposition at the cathode on discharge are Li2O2, Li2CO3, HCO2Li, CH3CO2Li, NO, H2O, and CO2. Li2CO3 accumulates in the electrode with cycling. The stability of dimethylformamide toward reduced oxygen species is insufficient for its use in the rechargeable nonaqueous Li–O2 battery.","lang":"eng"}],"citation":{"mla":"Chen, Yuhui, et al. “Li–O2 Battery with a Dimethylformamide Electrolyte.” <i>Journal of the American Chemical Society</i>, vol. 134, no. 18, ACS, 2012, pp. 7952–57, doi:<a href=\"https://doi.org/10.1021/ja302178w\">10.1021/ja302178w</a>.","ieee":"Y. Chen, S. A. Freunberger, Z. Peng, F. Bardé, and P. G. Bruce, “Li–O2 battery with a dimethylformamide electrolyte,” <i>Journal of the American Chemical Society</i>, vol. 134, no. 18. ACS, pp. 7952–7957, 2012.","chicago":"Chen, Yuhui, Stefan Alexander Freunberger, Zhangquan Peng, Fanny Bardé, and Peter G. Bruce. “Li–O2 Battery with a Dimethylformamide Electrolyte.” <i>Journal of the American Chemical Society</i>. ACS, 2012. <a href=\"https://doi.org/10.1021/ja302178w\">https://doi.org/10.1021/ja302178w</a>.","apa":"Chen, Y., Freunberger, S. A., Peng, Z., Bardé, F., &#38; Bruce, P. G. (2012). Li–O2 battery with a dimethylformamide electrolyte. <i>Journal of the American Chemical Society</i>. ACS. <a href=\"https://doi.org/10.1021/ja302178w\">https://doi.org/10.1021/ja302178w</a>","ista":"Chen Y, Freunberger SA, Peng Z, Bardé F, Bruce PG. 2012. Li–O2 battery with a dimethylformamide electrolyte. Journal of the American Chemical Society. 134(18), 7952–7957.","short":"Y. Chen, S.A. Freunberger, Z. Peng, F. Bardé, P.G. Bruce, Journal of the American Chemical Society 134 (2012) 7952–7957.","ama":"Chen Y, Freunberger SA, Peng Z, Bardé F, Bruce PG. Li–O2 battery with a dimethylformamide electrolyte. <i>Journal of the American Chemical Society</i>. 2012;134(18):7952-7957. doi:<a href=\"https://doi.org/10.1021/ja302178w\">10.1021/ja302178w</a>"},"author":[{"full_name":"Chen, Yuhui","last_name":"Chen","first_name":"Yuhui"},{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","first_name":"Stefan Alexander","orcid":"0000-0003-2902-5319","full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger"},{"full_name":"Peng, Zhangquan","last_name":"Peng","first_name":"Zhangquan"},{"first_name":"Fanny","last_name":"Bardé","full_name":"Bardé, Fanny"},{"last_name":"Bruce","full_name":"Bruce, Peter G.","first_name":"Peter G."}],"_id":"7311","doi":"10.1021/ja302178w","publication_identifier":{"issn":["0002-7863","1520-5126"]},"article_processing_charge":"No","date_updated":"2021-01-12T08:12:58Z","quality_controlled":"1","publication_status":"published","page":"7952-7957"},{"doi":"10.1073/pnas.1121134109","_id":"3104","page":"1554 - 1559","publication_status":"published","quality_controlled":0,"date_updated":"2021-01-12T07:41:05Z","extern":1,"status":"public","publisher":"National Academy of Sciences","author":[{"first_name":"Wim","full_name":"Grunewald, Wim","last_name":"Grunewald"},{"last_name":"De Smet","full_name":"De Smet, Ive","first_name":"Ive"},{"last_name":"Lewis","full_name":"Lewis, Daniel R","first_name":"Daniel"},{"first_name":"Christian","full_name":"Löfke, Christian","last_name":"Löfke"},{"first_name":"Leentje","full_name":"Jansen, Leentje","last_name":"Jansen"},{"first_name":"Geert","last_name":"Goeminne","full_name":"Goeminne, Geert"},{"full_name":"Vanden Bossche, Robin","last_name":"Vanden Bossche","first_name":"Robin"},{"first_name":"Mansour","last_name":"Karimi","full_name":"Karimi, Mansour"},{"last_name":"De Rybel","full_name":"De Rybel, Bert","first_name":"Bert"},{"full_name":"Vanholme, Bartel","last_name":"Vanholme","first_name":"Bartel"},{"full_name":"Teichmann, Thomas","last_name":"Teichmann","first_name":"Thomas"},{"first_name":"Wout","full_name":"Boerjan, Wout","last_name":"Boerjan"},{"first_name":"Marc","full_name":"Van Montagu, Marc C","last_name":"Van Montagu"},{"first_name":"Godelieve","full_name":"Gheysen, Godelieve","last_name":"Gheysen"},{"first_name":"Gloria","full_name":"Muday, Gloria K","last_name":"Muday"},{"orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jirí","full_name":"Jirí Friml","last_name":"Friml"},{"last_name":"Beeckman","full_name":"Beeckman, Tom","first_name":"Tom"}],"citation":{"chicago":"Grunewald, Wim, Ive De Smet, Daniel Lewis, Christian Löfke, Leentje Jansen, Geert Goeminne, Robin Vanden Bossche, et al. “Transcription Factor WRKY23 Assists Auxin Distribution Patterns during Arabidopsis Root Development through Local Control on Flavonol Biosynthesis.” <i>PNAS</i>. National Academy of Sciences, 2012. <a href=\"https://doi.org/10.1073/pnas.1121134109\">https://doi.org/10.1073/pnas.1121134109</a>.","mla":"Grunewald, Wim, et al. “Transcription Factor WRKY23 Assists Auxin Distribution Patterns during Arabidopsis Root Development through Local Control on Flavonol Biosynthesis.” <i>PNAS</i>, vol. 109, no. 5, National Academy of Sciences, 2012, pp. 1554–59, doi:<a href=\"https://doi.org/10.1073/pnas.1121134109\">10.1073/pnas.1121134109</a>.","ieee":"W. Grunewald <i>et al.</i>, “Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis,” <i>PNAS</i>, vol. 109, no. 5. National Academy of Sciences, pp. 1554–1559, 2012.","apa":"Grunewald, W., De Smet, I., Lewis, D., Löfke, C., Jansen, L., Goeminne, G., … Beeckman, T. (2012). Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1121134109\">https://doi.org/10.1073/pnas.1121134109</a>","ista":"Grunewald W, De Smet I, Lewis D, Löfke C, Jansen L, Goeminne G, Vanden Bossche R, Karimi M, De Rybel B, Vanholme B, Teichmann T, Boerjan W, Van Montagu M, Gheysen G, Muday G, Friml J, Beeckman T. 2012. Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis. PNAS. 109(5), 1554–1559.","ama":"Grunewald W, De Smet I, Lewis D, et al. Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis. <i>PNAS</i>. 2012;109(5):1554-1559. doi:<a href=\"https://doi.org/10.1073/pnas.1121134109\">10.1073/pnas.1121134109</a>","short":"W. Grunewald, I. De Smet, D. Lewis, C. Löfke, L. Jansen, G. Goeminne, R. Vanden Bossche, M. Karimi, B. De Rybel, B. Vanholme, T. Teichmann, W. Boerjan, M. Van Montagu, G. Gheysen, G. Muday, J. Friml, T. Beeckman, PNAS 109 (2012) 1554–1559."},"abstract":[{"lang":"eng","text":"\nGradients of the plant hormone auxin, which depend on its active intercellular transport, are crucial for the maintenance of root meristematic activity. This directional transport is largely orchestrated by a complex interaction of specific influx and efflux carriers that mediate the auxin flow into and out of cells, respectively. Besides these transport proteins, plant-specific polyphenolic compounds knownasflavonols have beenshownto act as endogenous regulators of auxin transport. However, only limited information is available on how flavonol synthesis is developmentally regulated. Using reduction-of-function and overexpression approaches in parallel, we demonstrate that the WRKY23 transcription factor is needed for proper root growth and development by stimulating the local biosynthesis of flavonols. The expression of WRKY23 itself is controlled by auxin through the AUXIN RESPONSE FACTOR 7 (ARF7) and ARF19 transcriptional response pathway. Our results suggest a model in which WRKY23 is part of a transcriptional feedback loop of auxin on its own transport through local regulation of flavonol biosynthesis."}],"publist_id":"3595","date_published":"2012-01-31T00:00:00Z","title":"Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis","month":"01","year":"2012","fulldoi":"https://doi.org/10.1073/pnas.1121134109","volume":109,"intvolume":"       109","type":"journal_article","day":"31","publication":"PNAS","date_created":"2018-12-11T12:01:24Z","issue":"5"},{"volume":22,"year":"2012","fulldoi":"https://doi.org/10.1016/j.devcel.2012.02.002","title":"GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses","month":"03","date_published":"2012-03-13T00:00:00Z","issue":"3","day":"13","publication":"Developmental Cell","date_created":"2018-12-11T12:01:25Z","intvolume":"        22","type":"journal_article","quality_controlled":0,"date_updated":"2021-01-12T07:41:06Z","page":"678 - 685","publication_status":"published","doi":"10.1016/j.devcel.2012.02.002","_id":"3105","publist_id":"3594","abstract":[{"text":"Growth and development are coordinated by an array of intercellular communications. Known plant signaling molecules include phytohormones and hormone peptides. Although both classes can be implicated in the same developmental processes, little is known about the interplay between phytohormone action and peptide signaling within the cellular microenvironment. We show that genes coding for small secretory peptides, designated GOLVEN (GLV), modulate the distribution of the phytohormone auxin. The deregulation of the GLV function impairs the formation of auxin gradients and alters the reorientation of shoots and roots after a gravity stimulus. Specifically, the GLV signal modulates the trafficking dynamics of the auxin efflux carrier PIN-FORMED2 involved in root tropic responses and meristem organization. Our work links the local action of secretory peptides with phytohormone transport. Root growth factor (RGF) or GOLVEN (GLV) secreted peptides have previously been implicated in meristem regulation. Whitford et al. now show that RGF/GLV peptides induce rapid relocalization of the auxin efflux regulator PIN2, regulate auxin gradients, and modulate auxin-dependent root responses to specific stimuli.","lang":"eng"}],"author":[{"first_name":"Ryan","last_name":"Whitford","full_name":"Whitford, Ryan"},{"last_name":"Fernandez","full_name":"Fernandez, Ana","first_name":"Ana"},{"last_name":"Tejos","full_name":"Tejos, Ricardo","first_name":"Ricardo"},{"first_name":"Amparo","full_name":"Pérez, Amparo Cuéllar","last_name":"Pérez"},{"full_name":"Kleine-Vehn, Jürgen","last_name":"Kleine Vehn","first_name":"Jürgen"},{"first_name":"Steffen","last_name":"Vanneste","full_name":"Vanneste, Steffen"},{"first_name":"Andrzej","full_name":"Drozdzecki, Andrzej","last_name":"Drozdzecki"},{"last_name":"Leitner","full_name":"Leitner, Johannes","first_name":"Johannes"},{"first_name":"Lindy","full_name":"Abas, Lindy","last_name":"Abas"},{"full_name":"Aerts, Maarten","last_name":"Aerts","first_name":"Maarten"},{"first_name":"Kurt","full_name":"Hoogewijs, Kurt","last_name":"Hoogewijs"},{"full_name":"Pawel Baster","last_name":"Baster","first_name":"Pawel","id":"3028BD74-F248-11E8-B48F-1D18A9856A87"},{"last_name":"De Groodt","full_name":"De Groodt, Ruth","first_name":"Ruth"},{"last_name":"Lin","full_name":"Lin, Yao-Cheng","first_name":"Yao"},{"last_name":"Storme","full_name":"Storme, Véronique","first_name":"Véronique"},{"last_name":"Van De Peer","full_name":"Van de Peer, Yves","first_name":"Yves"},{"first_name":"Tom","full_name":"Beeckman, Tom","last_name":"Beeckman"},{"first_name":"Annemieke","full_name":"Madder, Annemieke","last_name":"Madder"},{"first_name":"Bart","full_name":"Devreese, Bart","last_name":"Devreese"},{"first_name":"Christian","last_name":"Luschnig","full_name":"Luschnig, Christian"},{"first_name":"Jirí","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","full_name":"Jirí Friml"},{"first_name":"Pierre","full_name":"Hilson, Pierre","last_name":"Hilson"}],"citation":{"short":"R. Whitford, A. Fernandez, R. Tejos, A. Pérez, J. Kleine Vehn, S. Vanneste, A. Drozdzecki, J. Leitner, L. Abas, M. Aerts, K. Hoogewijs, P. Baster, R. De Groodt, Y. Lin, V. Storme, Y. Van De Peer, T. Beeckman, A. Madder, B. Devreese, C. Luschnig, J. Friml, P. Hilson, Developmental Cell 22 (2012) 678–685.","ama":"Whitford R, Fernandez A, Tejos R, et al. GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses. <i>Developmental Cell</i>. 2012;22(3):678-685. doi:<a href=\"https://doi.org/10.1016/j.devcel.2012.02.002\">10.1016/j.devcel.2012.02.002</a>","ista":"Whitford R, Fernandez A, Tejos R, Pérez A, Kleine Vehn J, Vanneste S, Drozdzecki A, Leitner J, Abas L, Aerts M, Hoogewijs K, Baster P, De Groodt R, Lin Y, Storme V, Van De Peer Y, Beeckman T, Madder A, Devreese B, Luschnig C, Friml J, Hilson P. 2012. GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses. Developmental Cell. 22(3), 678–685.","apa":"Whitford, R., Fernandez, A., Tejos, R., Pérez, A., Kleine Vehn, J., Vanneste, S., … Hilson, P. (2012). GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses. <i>Developmental Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.devcel.2012.02.002\">https://doi.org/10.1016/j.devcel.2012.02.002</a>","ieee":"R. Whitford <i>et al.</i>, “GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses,” <i>Developmental Cell</i>, vol. 22, no. 3. Cell Press, pp. 678–685, 2012.","mla":"Whitford, Ryan, et al. “GOLVEN Secretory Peptides Regulate Auxin Carrier Turnover during Plant Gravitropic Responses.” <i>Developmental Cell</i>, vol. 22, no. 3, Cell Press, 2012, pp. 678–85, doi:<a href=\"https://doi.org/10.1016/j.devcel.2012.02.002\">10.1016/j.devcel.2012.02.002</a>.","chicago":"Whitford, Ryan, Ana Fernandez, Ricardo Tejos, Amparo Pérez, Jürgen Kleine Vehn, Steffen Vanneste, Andrzej Drozdzecki, et al. “GOLVEN Secretory Peptides Regulate Auxin Carrier Turnover during Plant Gravitropic Responses.” <i>Developmental Cell</i>. Cell Press, 2012. <a href=\"https://doi.org/10.1016/j.devcel.2012.02.002\">https://doi.org/10.1016/j.devcel.2012.02.002</a>."},"status":"public","publisher":"Cell Press","extern":1}]