[{"publication":"Nature Structural and Molecular Biology","author":[{"last_name":"Meyer","first_name":"Krista","full_name":"Meyer, Krista"},{"first_name":"Shih","last_name":"Lin","full_name":"Lin, Shih"},{"last_name":"Bernecky","first_name":"Carrie A","id":"2CB9DFE2-F248-11E8-B48F-1D18A9856A87","full_name":"Bernecky, Carrie A","orcid":"0000-0003-0893-7036"},{"first_name":"Yuefeng","last_name":"Gao","full_name":"Gao, Yuefeng"},{"full_name":"Taatjes, Dylan","first_name":"Dylan","last_name":"Taatjes"}],"extern":"1","article_processing_charge":"No","abstract":[{"lang":"eng","text":"It is not well understood how the human Mediator complex, transcription factor IIH and RNA polymerase II (Pol II) work together with activators to initiate transcription. Activator binding alters Mediator structure, yet the functional consequences of such structural shifts remain unknown. The p53 C terminus and its activation domain interact with different Mediator subunits, and we find that each interaction differentially affects Mediator structure; strikingly, distinct p53-Mediator structures differentially affect Pol II activity. Only the p53 activation domain induces the formation of a large pocket domain at the Mediator-Pol II interaction site, and this correlates with activation of stalled Pol II to a productively elongating state. Moreover, we define a Mediator requirement for TFIIH-dependent Pol II C-terminal domain phosphorylation and identify substantial differences in Pol II C-terminal domain processing that correspond to distinct p53-Mediator structural states. Our results define a fundamental mechanism by which p53 activates transcription and suggest that Mediator structural shifts trigger activation of stalled Pol II complexes."}],"publisher":"Nature Publishing Group","language":[{"iso":"eng"}],"month":"06","_id":"598","intvolume":"        17","oa_version":"None","page":"753 - 760","oa":1,"citation":{"apa":"Meyer, K., Lin, S., Bernecky, C., Gao, Y., &#38; Taatjes, D. (2010). P53 activates transcription by directing structural shifts in Mediator. <i>Nature Structural and Molecular Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nsmb.1816\">https://doi.org/10.1038/nsmb.1816</a>","ista":"Meyer K, Lin S, Bernecky C, Gao Y, Taatjes D. 2010. P53 activates transcription by directing structural shifts in Mediator. Nature Structural and Molecular Biology. 17(6), 753–760.","short":"K. Meyer, S. Lin, C. Bernecky, Y. Gao, D. Taatjes, Nature Structural and Molecular Biology 17 (2010) 753–760.","ama":"Meyer K, Lin S, Bernecky C, Gao Y, Taatjes D. P53 activates transcription by directing structural shifts in Mediator. <i>Nature Structural and Molecular Biology</i>. 2010;17(6):753-760. doi:<a href=\"https://doi.org/10.1038/nsmb.1816\">10.1038/nsmb.1816</a>","chicago":"Meyer, Krista, Shih Lin, Carrie Bernecky, Yuefeng Gao, and Dylan Taatjes. “P53 Activates Transcription by Directing Structural Shifts in Mediator.” <i>Nature Structural and Molecular Biology</i>. Nature Publishing Group, 2010. <a href=\"https://doi.org/10.1038/nsmb.1816\">https://doi.org/10.1038/nsmb.1816</a>.","ieee":"K. Meyer, S. Lin, C. Bernecky, Y. Gao, and D. Taatjes, “P53 activates transcription by directing structural shifts in Mediator,” <i>Nature Structural and Molecular Biology</i>, vol. 17, no. 6. Nature Publishing Group, pp. 753–760, 2010.","mla":"Meyer, Krista, et al. “P53 Activates Transcription by Directing Structural Shifts in Mediator.” <i>Nature Structural and Molecular Biology</i>, vol. 17, no. 6, Nature Publishing Group, 2010, pp. 753–60, doi:<a href=\"https://doi.org/10.1038/nsmb.1816\">10.1038/nsmb.1816</a>."},"date_published":"2010-06-01T00:00:00Z","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1038/nsmb.1816","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2932482/","open_access":"1"}],"date_created":"2018-12-11T11:47:24Z","year":"2010","volume":17,"publication_status":"published","type":"journal_article","day":"01","date_updated":"2021-01-12T08:05:28Z","issue":"6","title":"P53 activates transcription by directing structural shifts in Mediator","publist_id":"7210"},{"day":"11","type":"journal_article","has_accepted_license":"1","status":"public","doi":"10.1371/journal.pone.0013922","date_created":"2019-03-20T15:20:30Z","ddc":["570"],"publication_identifier":{"issn":["1932-6203"]},"title":"Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegans","issue":"11","language":[{"iso":"eng"}],"publisher":"Public Library of Science","license":"https://creativecommons.org/licenses/by/4.0/","pmid":1,"month":"11","publication":"PLoS ONE","quality_controlled":"1","date_published":"2010-11-11T00:00:00Z","citation":{"mla":"Weber, Katherine P., et al. “Whole Genome Sequencing Highlights Genetic Changes Associated with Laboratory Domestication of C. Elegans.” <i>PLoS ONE</i>, vol. 5, no. 11, e13922, Public Library of Science, 2010, doi:<a href=\"https://doi.org/10.1371/journal.pone.0013922\">10.1371/journal.pone.0013922</a>.","ama":"Weber KP, De S, Kozarewa I, Turner DJ, Babu MM, de Bono M. Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegans. <i>PLoS ONE</i>. 2010;5(11). doi:<a href=\"https://doi.org/10.1371/journal.pone.0013922\">10.1371/journal.pone.0013922</a>","ieee":"K. P. Weber, S. De, I. Kozarewa, D. J. Turner, M. M. Babu, and M. de Bono, “Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegans,” <i>PLoS ONE</i>, vol. 5, no. 11. Public Library of Science, 2010.","chicago":"Weber, Katherine P., Subhajyoti De, Iwanka Kozarewa, Daniel J. Turner, M. Madan Babu, and Mario de Bono. “Whole Genome Sequencing Highlights Genetic Changes Associated with Laboratory Domestication of C. Elegans.” <i>PLoS ONE</i>. Public Library of Science, 2010. <a href=\"https://doi.org/10.1371/journal.pone.0013922\">https://doi.org/10.1371/journal.pone.0013922</a>.","short":"K.P. Weber, S. De, I. Kozarewa, D.J. Turner, M.M. Babu, M. de Bono, PLoS ONE 5 (2010).","ista":"Weber KP, De S, Kozarewa I, Turner DJ, Babu MM, de Bono M. 2010. Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegans. PLoS ONE. 5(11), e13922.","apa":"Weber, K. P., De, S., Kozarewa, I., Turner, D. J., Babu, M. M., &#38; de Bono, M. (2010). Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegans. <i>PLoS ONE</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0013922\">https://doi.org/10.1371/journal.pone.0013922</a>"},"intvolume":"         5","article_number":"e13922","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"volume":5,"year":"2010","publication_status":"published","file":[{"file_name":"2010_PLOS_Weber.PDF","date_updated":"2020-07-14T12:47:20Z","file_size":578059,"relation":"main_file","file_id":"6143","content_type":"application/pdf","access_level":"open_access","creator":"kschuh","checksum":"a01e6bbe15f044c0c79a26d7d881953e","date_created":"2019-03-20T15:22:48Z"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","file_date_updated":"2020-07-14T12:47:20Z","date_updated":"2021-01-12T08:06:20Z","author":[{"last_name":"Weber","first_name":"Katherine P.","full_name":"Weber, Katherine P."},{"full_name":"De, Subhajyoti","first_name":"Subhajyoti","last_name":"De"},{"full_name":"Kozarewa, Iwanka","first_name":"Iwanka","last_name":"Kozarewa"},{"full_name":"Turner, Daniel J.","first_name":"Daniel J.","last_name":"Turner"},{"full_name":"Babu, M. Madan","first_name":"M. Madan","last_name":"Babu"},{"last_name":"de Bono","first_name":"Mario","id":"4E3FF80E-F248-11E8-B48F-1D18A9856A87","full_name":"de Bono, Mario","orcid":"0000-0001-8347-0443"}],"external_id":{"pmid":["21085631"]},"abstract":[{"lang":"eng","text":"Defining the mutational landscape when individuals of a species grow separately and diverge over many generations can provide insights into trait evolution. A specific example of this involves studying changes associated with domestication where different lines of the same wild stock have been cultivated independently in different standard environments. Whole genome sequence comparison of such lines permits estimation of mutation rates, inference of genes' ancestral states and ancestry of existing strains, and correction of sequencing errors in genome databases. Here we study domestication of the C. elegans Bristol strain as a model, and report the genome sequence of LSJ1 (Bristol), a sibling of the standard C. elegans reference wild type N2 (Bristol). The LSJ1 and N2 lines were cultivated separately from shortly after the Bristol strain was isolated until methods to freeze C. elegans were developed. We find that during this time the two strains have accumulated 1208 genetic differences. We describe phenotypic variation between N2 and LSJ1 in the rate at which embryos develop, the rate of production of eggs, the maturity of eggs at laying, and feeding behavior, all the result of post-isolation changes. We infer the ancestral alleles in the original Bristol isolate and highlight 2038 likely sequencing errors in the original N2 reference genome sequence. Many of these changes modify genome annotation. Our study provides a starting point to further investigate genotype-phenotype association and offers insights into the process of selection as a result of laboratory domestication."}],"extern":"1","oa":1,"_id":"6142","oa_version":"Published Version"},{"date_created":"2018-12-11T11:47:32Z","status":"public","publication_status":"published","type":"book_chapter","day":"01","year":"2010","title":"“This is a fundamentalist town”: The Prairie Town as a Site of Social and Cultural Conflict in Sinclair Ross’s As for Me and My House","date_updated":"2021-01-12T08:06:40Z","publist_id":"7185","quality_controlled":0,"abstract":[{"lang":"eng","text":"Sinclair Ross’s novel As for Me and My House has long since been canonized as Canadian prairie fiction. Accordingly, it has been the subject of many critical studies and academic papers. Most commentators have concentrated on such literary issues as the representation of the western landscape or the reliability of the female narrator. But so far little consideration has been given to the social and cultural implications of the novel. Few attempts have been made to analyze the text from a cultural perspective including such social markers as class, gender and ethnicity. That is all the more surprising because Sinclair Ross has often been credited for being a realistic author and As for Me and My House has often been interpreted as a regional novel characteristic of a particular time and place."}],"extern":1,"publication":"Social and cultural interaction and literary landscapes in the Canadian West : impressions of an exploratory field trip and academic interaction in the Canadian West : Rapports interculturels et paysages littéraires dans l'Ouest canadien","author":[{"last_name":"Zacharasiewicz","first_name":"Waldemar","full_name":"Zacharasiewicz, Waldemar"},{"full_name":"Kirsch, Fritz Peter","last_name":"Kirsch","first_name":"Fritz"}],"month":"01","publisher":"Facultas.WUV","_id":"619","citation":{"ama":"Zacharasiewicz W, Kirsch F. “This is a fundamentalist town”: The Prairie Town as a Site of Social and Cultural Conflict in Sinclair Ross’s As for Me and My House. In: <i>Social and Cultural Interaction and Literary Landscapes in the Canadian West : Impressions of an Exploratory Field Trip and Academic Interaction in the Canadian West : Rapports Interculturels et Paysages Littéraires Dans l’Ouest Canadien</i>. Facultas.WUV; 2010:173-179.","chicago":"Zacharasiewicz, Waldemar, and Fritz Kirsch. “‘This Is a Fundamentalist Town’: The Prairie Town as a Site of Social and Cultural Conflict in Sinclair Ross’s As for Me and My House.” In <i>Social and Cultural Interaction and Literary Landscapes in the Canadian West : Impressions of an Exploratory Field Trip and Academic Interaction in the Canadian West : Rapports Interculturels et Paysages Littéraires Dans l’Ouest Canadien</i>, 173–79. Facultas.WUV, 2010.","ieee":"W. Zacharasiewicz and F. Kirsch, “‘This is a fundamentalist town’: The Prairie Town as a Site of Social and Cultural Conflict in Sinclair Ross’s As for Me and My House,” in <i>Social and cultural interaction and literary landscapes in the Canadian West : impressions of an exploratory field trip and academic interaction in the Canadian West : Rapports interculturels et paysages littéraires dans l’Ouest canadien</i>, Facultas.WUV, 2010, pp. 173–179.","mla":"Zacharasiewicz, Waldemar, and Fritz Kirsch. “‘This Is a Fundamentalist Town’: The Prairie Town as a Site of Social and Cultural Conflict in Sinclair Ross’s As for Me and My House.” <i>Social and Cultural Interaction and Literary Landscapes in the Canadian West : Impressions of an Exploratory Field Trip and Academic Interaction in the Canadian West : Rapports Interculturels et Paysages Littéraires Dans l’Ouest Canadien</i>, Facultas.WUV, 2010, pp. 173–79.","apa":"Zacharasiewicz, W., &#38; Kirsch, F. (2010). “This is a fundamentalist town”: The Prairie Town as a Site of Social and Cultural Conflict in Sinclair Ross’s As for Me and My House. In <i>Social and cultural interaction and literary landscapes in the Canadian West : impressions of an exploratory field trip and academic interaction in the Canadian West : Rapports interculturels et paysages littéraires dans l’Ouest canadien</i> (pp. 173–179). Facultas.WUV.","ista":"Zacharasiewicz W, Kirsch F. 2010.“This is a fundamentalist town”: The Prairie Town as a Site of Social and Cultural Conflict in Sinclair Ross’s As for Me and My House. In: Social and cultural interaction and literary landscapes in the Canadian West : impressions of an exploratory field trip and academic interaction in the Canadian West : Rapports interculturels et paysages littéraires dans l’Ouest canadien. , 173–179.","short":"W. Zacharasiewicz, F. Kirsch, in:, Social and Cultural Interaction and Literary Landscapes in the Canadian West : Impressions of an Exploratory Field Trip and Academic Interaction in the Canadian West : Rapports Interculturels et Paysages Littéraires Dans l’Ouest Canadien, Facultas.WUV, 2010, pp. 173–179."},"date_published":"2010-01-01T00:00:00Z","page":"173 - 179"},{"status":"public","doi":"10.1038/nm.2245","date_created":"2019-04-04T14:55:32Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","volume":16,"year":"2010","publication_status":"published","type":"journal_article","day":"21","date_updated":"2021-01-12T08:06:43Z","title":"Treatment of cerebral ischemia by disrupting ischemia-induced interaction of nNOS with PSD-95","issue":"12","publication_identifier":{"issn":["1078-8956","1546-170x"]},"publication":"Nature Medicine","external_id":{"pmid":["21102461"]},"author":[{"last_name":"Zhou","first_name":"L","full_name":"Zhou, L"},{"first_name":"F","last_name":"Li","full_name":"Li, F"},{"first_name":"Haibing","last_name":"Xu","full_name":"Xu, Haibing","id":"310349D0-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Luo, CX","last_name":"Luo","first_name":"CX"},{"full_name":"Wu, HY","first_name":"HY","last_name":"Wu"},{"last_name":"Zhu","first_name":"MM","full_name":"Zhu, MM"},{"full_name":"Lu, W","first_name":"W","last_name":"Lu"},{"first_name":"X","last_name":"Ji","full_name":"Ji, X"},{"last_name":"Zhou","first_name":"QG","full_name":"Zhou, QG"},{"last_name":"Zhu","first_name":"DY","full_name":"Zhu, DY"}],"quality_controlled":"1","extern":"1","abstract":[{"text":"Stroke is a major public health problem leading to high rates of death and disability in adults. Excessive stimulation of N-methyl-D-aspartate receptors (NMDARs) and the resulting neuronal nitric oxide synthase (nNOS) activation are crucial for neuronal injury after stroke insult. However, directly inhibiting NMDARs or nNOS can cause severe side effects because they have key physiological functions in the CNS. Here we show that cerebral ischemia induces the interaction of nNOS with postsynaptic density protein-95 (PSD-95). Disrupting nNOS-PSD-95 interaction via overexpressing the N-terminal amino acid residues 1-133 of nNOS (nNOS-N(1-133)) prevented glutamate-induced excitotoxicity and cerebral ischemic damage. Given the mechanism of nNOS-PSD-95 interaction, we developed a series of compounds and discovered a small-molecular inhibitor of the nNOS-PSD-95 interaction, ZL006. This drug blocked the ischemia-induced nNOS-PSD-95 association selectively, had potent neuroprotective activity in vitro and ameliorated focal cerebral ischemic damage in mice and rats subjected to middle cerebral artery occlusion (MCAO) and reperfusion. Moreover, it readily crossed the blood-brain barrier, did not inhibit NMDAR function, catalytic activity of nNOS or spatial memory, and had no effect on aggressive behaviors. Thus, this new drug may serve as a treatment for stroke, perhaps without major side effects. ","lang":"eng"}],"publisher":"Nature Publishing Group","language":[{"iso":"eng"}],"pmid":1,"month":"11","intvolume":"        16","_id":"6198","oa_version":"None","page":"1439-1443","citation":{"ama":"Zhou L, Li F, Xu H, et al. Treatment of cerebral ischemia by disrupting ischemia-induced interaction of nNOS with PSD-95. <i>Nature Medicine</i>. 2010;16(12):1439-1443. doi:<a href=\"https://doi.org/10.1038/nm.2245\">10.1038/nm.2245</a>","ieee":"L. Zhou <i>et al.</i>, “Treatment of cerebral ischemia by disrupting ischemia-induced interaction of nNOS with PSD-95,” <i>Nature Medicine</i>, vol. 16, no. 12. Nature Publishing Group, pp. 1439–1443, 2010.","chicago":"Zhou, L, F Li, Haibing Xu, CX Luo, HY Wu, MM Zhu, W Lu, X Ji, QG Zhou, and DY Zhu. “Treatment of Cerebral Ischemia by Disrupting Ischemia-Induced Interaction of NNOS with PSD-95.” <i>Nature Medicine</i>. Nature Publishing Group, 2010. <a href=\"https://doi.org/10.1038/nm.2245\">https://doi.org/10.1038/nm.2245</a>.","mla":"Zhou, L., et al. “Treatment of Cerebral Ischemia by Disrupting Ischemia-Induced Interaction of NNOS with PSD-95.” <i>Nature Medicine</i>, vol. 16, no. 12, Nature Publishing Group, 2010, pp. 1439–43, doi:<a href=\"https://doi.org/10.1038/nm.2245\">10.1038/nm.2245</a>.","apa":"Zhou, L., Li, F., Xu, H., Luo, C., Wu, H., Zhu, M., … Zhu, D. (2010). Treatment of cerebral ischemia by disrupting ischemia-induced interaction of nNOS with PSD-95. <i>Nature Medicine</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nm.2245\">https://doi.org/10.1038/nm.2245</a>","ista":"Zhou L, Li F, Xu H, Luo C, Wu H, Zhu M, Lu W, Ji X, Zhou Q, Zhu D. 2010. Treatment of cerebral ischemia by disrupting ischemia-induced interaction of nNOS with PSD-95. Nature Medicine. 16(12), 1439–1443.","short":"L. Zhou, F. Li, H. Xu, C. Luo, H. Wu, M. Zhu, W. Lu, X. Ji, Q. Zhou, D. Zhu, Nature Medicine 16 (2010) 1439–1443."},"date_published":"2010-11-21T00:00:00Z"},{"type":"journal_article","day":"18","status":"public","date_created":"2019-11-19T13:46:28Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1011.1445"}],"doi":"10.1103/physrevb.82.184112","arxiv":1,"publication_identifier":{"issn":["1098-0121","1550-235X"]},"title":"Tin telluride: A weakly co-elastic metal","issue":"18","language":[{"iso":"eng"}],"publisher":"APS","month":"11","publication":"Physical Review B","article_processing_charge":"No","quality_controlled":"1","date_published":"2010-11-18T00:00:00Z","citation":{"ama":"Salje EKH, Safarik DJ, Modic KA, et al. Tin telluride: A weakly co-elastic metal. <i>Physical Review B</i>. 2010;82(18). doi:<a href=\"https://doi.org/10.1103/physrevb.82.184112\">10.1103/physrevb.82.184112</a>","ieee":"E. K. H. Salje <i>et al.</i>, “Tin telluride: A weakly co-elastic metal,” <i>Physical Review B</i>, vol. 82, no. 18. APS, 2010.","chicago":"Salje, E. K. H., D. J. Safarik, Kimberly A Modic, J. E. Gubernatis, J. C. Cooley, R. D. Taylor, B. Mihaila, et al. “Tin Telluride: A Weakly Co-Elastic Metal.” <i>Physical Review B</i>. APS, 2010. <a href=\"https://doi.org/10.1103/physrevb.82.184112\">https://doi.org/10.1103/physrevb.82.184112</a>.","mla":"Salje, E. K. H., et al. “Tin Telluride: A Weakly Co-Elastic Metal.” <i>Physical Review B</i>, vol. 82, no. 18, 184112, APS, 2010, doi:<a href=\"https://doi.org/10.1103/physrevb.82.184112\">10.1103/physrevb.82.184112</a>.","apa":"Salje, E. K. H., Safarik, D. J., Modic, K. A., Gubernatis, J. E., Cooley, J. C., Taylor, R. D., … Lashley, J. C. (2010). Tin telluride: A weakly co-elastic metal. <i>Physical Review B</i>. APS. <a href=\"https://doi.org/10.1103/physrevb.82.184112\">https://doi.org/10.1103/physrevb.82.184112</a>","ista":"Salje EKH, Safarik DJ, Modic KA, Gubernatis JE, Cooley JC, Taylor RD, Mihaila B, Saxena A, Lookman T, Smith JL, Fisher RA, Pasternak M, Opeil CP, Siegrist T, Littlewood PB, Lashley JC. 2010. Tin telluride: A weakly co-elastic metal. Physical Review B. 82(18), 184112.","short":"E.K.H. Salje, D.J. Safarik, K.A. Modic, J.E. Gubernatis, J.C. Cooley, R.D. Taylor, B. Mihaila, A. Saxena, T. Lookman, J.L. Smith, R.A. Fisher, M. Pasternak, C.P. Opeil, T. Siegrist, P.B. Littlewood, J.C. Lashley, Physical Review B 82 (2010)."},"intvolume":"        82","article_number":"184112","volume":82,"year":"2010","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2021-01-12T08:11:44Z","author":[{"first_name":"E. K. H.","last_name":"Salje","full_name":"Salje, E. K. H."},{"first_name":"D. J.","last_name":"Safarik","full_name":"Safarik, D. J."},{"first_name":"Kimberly A","last_name":"Modic","full_name":"Modic, Kimberly A","orcid":"0000-0001-9760-3147","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425"},{"first_name":"J. E.","last_name":"Gubernatis","full_name":"Gubernatis, J. E."},{"full_name":"Cooley, J. C.","last_name":"Cooley","first_name":"J. C."},{"last_name":"Taylor","first_name":"R. D.","full_name":"Taylor, R. D."},{"first_name":"B.","last_name":"Mihaila","full_name":"Mihaila, B."},{"full_name":"Saxena, A.","first_name":"A.","last_name":"Saxena"},{"full_name":"Lookman, T.","first_name":"T.","last_name":"Lookman"},{"full_name":"Smith, J. L.","last_name":"Smith","first_name":"J. L."},{"last_name":"Fisher","first_name":"R. A.","full_name":"Fisher, R. A."},{"full_name":"Pasternak, M.","first_name":"M.","last_name":"Pasternak"},{"last_name":"Opeil","first_name":"C. P.","full_name":"Opeil, C. P."},{"first_name":"T.","last_name":"Siegrist","full_name":"Siegrist, T."},{"full_name":"Littlewood, P. B.","last_name":"Littlewood","first_name":"P. B."},{"full_name":"Lashley, J. C.","first_name":"J. C.","last_name":"Lashley"}],"external_id":{"arxiv":["1011.1445"]},"abstract":[{"lang":"eng","text":"We report resonant ultrasound spectroscopy (RUS), dilatometry/magnetostriction, magnetotransport, magnetization, specific-heat, and 119Sn Mössbauer spectroscopy measurements on SnTe and Sn0.995Cr0.005Te. Hall measurements at T=77 K indicate that our Bridgman-grown single crystals have a p-type carrier concentration of 3.4×1019 cm−3 and that our Cr-doped crystals have an n-type concentration of 5.8×1022 cm−3. Although our SnTe crystals are diamagnetic over the temperature range 2≤T≤1100 K, the Cr-doped crystals are room-temperature ferromagnets with a Curie temperature of 294 K. For each sample type, three-terminal capacitive dilatometry measurements detect a subtle 0.5 μm distortion at Tc≈85 K. Whereas our RUS measurements on SnTe show elastic hardening near the structural transition, pointing to co-elastic behavior, similar measurements on Sn0.995Cr0.005Te show a pronounced softening, pointing to ferroelastic behavior. Effective Debye temperature, θD, values of SnTe obtained from 119Sn Mössbauer studies show a hardening of phonons in the range 60–115 K (θD=162 K) as compared with the 100–300 K range (θD=150 K). In addition, a precursor softening extending over approximately 100 K anticipates this collapse at the critical temperature and quantitative analysis over three decades of its reduced modulus finds ΔC44/C44=A|(T−T0)/T0|−κ with κ=0.50±0.02, a value indicating a three-dimensional softening of phonon branches at a temperature T0∼75 K, considerably below Tc. We suggest that the differences in these two types of elastic behaviors lie in the absence of elastic domain-wall motion in the one case and their nucleation in the other."}],"extern":"1","article_type":"original","oa":1,"_id":"7078","oa_version":"Preprint"},{"publisher":"AIP","language":[{"iso":"eng"}],"month":"02","publication":"Journal of Applied Physics","author":[{"full_name":"Drymiotis, Fivos R.","last_name":"Drymiotis","first_name":"Fivos R."},{"first_name":"Tyler B.","last_name":"Drye","full_name":"Drye, Tyler B."},{"full_name":"Wang, Yisha","first_name":"Yisha","last_name":"Wang"},{"first_name":"Jian","last_name":"He","full_name":"He, Jian"},{"last_name":"Rhodes","first_name":"Daniel","full_name":"Rhodes, Daniel"},{"first_name":"Kimberly A","last_name":"Modic","full_name":"Modic, Kimberly A","orcid":"0000-0001-9760-3147","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425"},{"full_name":"Cawthorne, Samantha","first_name":"Samantha","last_name":"Cawthorne"},{"full_name":"Zhang, Qiu Run","first_name":"Qiu Run","last_name":"Zhang"}],"quality_controlled":"1","extern":"1","abstract":[{"text":"We have observed that reacting Pb:Te:Ag:Se in a 1:1:1.9:1 molar ratio gives rise to what appears to be a predominantly single-phase alloy, which crystallizes in the PbSe cF8 fcc structure. However, further investigation of the structure using energy dispersive x-ray analysis reveals the presence of two phases, PbSe and β-Ag2Te, with identical lattice parameters. The total thermal conductivity of the formed alloy is remarkably low for a crystalline material, κT<0.6W∕mK at 675K, it is reproducible, and in addition, the compound has good mechanical properties.","lang":"eng"}],"article_processing_charge":"No","article_type":"original","citation":{"ista":"Drymiotis FR, Drye TB, Wang Y, He J, Rhodes D, Modic KA, Cawthorne S, Zhang QR. 2010. Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures. Journal of Applied Physics. 107(3), 033519.","apa":"Drymiotis, F. R., Drye, T. B., Wang, Y., He, J., Rhodes, D., Modic, K. A., … Zhang, Q. R. (2010). Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures. <i>Journal of Applied Physics</i>. AIP. <a href=\"https://doi.org/10.1063/1.3284946\">https://doi.org/10.1063/1.3284946</a>","short":"F.R. Drymiotis, T.B. Drye, Y. Wang, J. He, D. Rhodes, K.A. Modic, S. Cawthorne, Q.R. Zhang, Journal of Applied Physics 107 (2010).","ama":"Drymiotis FR, Drye TB, Wang Y, et al. Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures. <i>Journal of Applied Physics</i>. 2010;107(3). doi:<a href=\"https://doi.org/10.1063/1.3284946\">10.1063/1.3284946</a>","chicago":"Drymiotis, Fivos R., Tyler B. Drye, Yisha Wang, Jian He, Daniel Rhodes, Kimberly A Modic, Samantha Cawthorne, and Qiu Run Zhang. “Structure Formation and Very Low Thermal Conductivity in Pb:Te:Ag:Se Mixtures.” <i>Journal of Applied Physics</i>. AIP, 2010. <a href=\"https://doi.org/10.1063/1.3284946\">https://doi.org/10.1063/1.3284946</a>.","ieee":"F. R. Drymiotis <i>et al.</i>, “Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures,” <i>Journal of Applied Physics</i>, vol. 107, no. 3. AIP, 2010.","mla":"Drymiotis, Fivos R., et al. “Structure Formation and Very Low Thermal Conductivity in Pb:Te:Ag:Se Mixtures.” <i>Journal of Applied Physics</i>, vol. 107, no. 3, 033519, AIP, 2010, doi:<a href=\"https://doi.org/10.1063/1.3284946\">10.1063/1.3284946</a>."},"date_published":"2010-02-09T00:00:00Z","intvolume":"       107","_id":"7079","article_number":"033519","oa_version":"None","year":"2010","volume":107,"publication_status":"published","type":"journal_article","day":"09","status":"public","date_created":"2019-11-19T13:47:24Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1063/1.3284946","publication_identifier":{"issn":["0021-8979","1089-7550"]},"date_updated":"2021-01-12T08:11:44Z","issue":"3","title":"Structure formation and very low thermal conductivity in Pb:Te:Ag:Se mixtures"},{"month":"12","language":[{"iso":"eng"}],"publisher":"Royal Society of Chemistry (RSC)","article_processing_charge":"No","quality_controlled":"1","publication":"Soft Matter","date_published":"2010-12-23T00:00:00Z","citation":{"ista":"Šarić A, Cacciuto A. 2010. Particle self-assembly on soft elastic shells. Soft Matter. 7(5), 1874–1878.","apa":"Šarić, A., &#38; Cacciuto, A. (2010). Particle self-assembly on soft elastic shells. <i>Soft Matter</i>. Royal Society of Chemistry (RSC). <a href=\"https://doi.org/10.1039/c0sm01143f\">https://doi.org/10.1039/c0sm01143f</a>","short":"A. Šarić, A. Cacciuto, Soft Matter 7 (2010) 1874–1878.","chicago":"Šarić, Anđela, and Angelo Cacciuto. “Particle Self-Assembly on Soft Elastic Shells.” <i>Soft Matter</i>. Royal Society of Chemistry (RSC), 2010. <a href=\"https://doi.org/10.1039/c0sm01143f\">https://doi.org/10.1039/c0sm01143f</a>.","ieee":"A. Šarić and A. Cacciuto, “Particle self-assembly on soft elastic shells,” <i>Soft Matter</i>, vol. 7, no. 5. Royal Society of Chemistry (RSC), pp. 1874–1878, 2010.","ama":"Šarić A, Cacciuto A. Particle self-assembly on soft elastic shells. <i>Soft Matter</i>. 2010;7(5):1874-1878. doi:<a href=\"https://doi.org/10.1039/c0sm01143f\">10.1039/c0sm01143f</a>","mla":"Šarić, Anđela, and Angelo Cacciuto. “Particle Self-Assembly on Soft Elastic Shells.” <i>Soft Matter</i>, vol. 7, no. 5, Royal Society of Chemistry (RSC), 2010, pp. 1874–78, doi:<a href=\"https://doi.org/10.1039/c0sm01143f\">10.1039/c0sm01143f</a>."},"intvolume":"         7","day":"23","type":"journal_article","acknowledgement":"This work was supported by the National Science Foundation under Career Grant No. DMR-0846426. We thank Josep C. Pàmies for helpful discussions.","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1010.2453"}],"arxiv":1,"date_created":"2021-10-12T08:34:23Z","doi":"10.1039/c0sm01143f","status":"public","publication_identifier":{"issn":["1744-683X","1744-6848"]},"issue":"5","title":"Particle self-assembly on soft elastic shells","abstract":[{"text":"We use numerical simulations to show how noninteracting hard particles binding to a deformable elastic shell may self-assemble into a variety of linear patterns. This is a result of the nontrivial elastic response to deformations of shells. The morphology of the patterns can be controlled by the mechanical properties of the surface, and can be fine-tuned by varying the binding energy of the particles. We also repeat our calculations for a fully flexible chain and find that the chain conformations follow patterns similar to those formed by the nanoparticles under analogous conditions. We propose a simple way of understanding and sorting the different structures and relate it to the underlying shape transition of the shell. Finally, we discuss the implications of our results.","lang":"eng"}],"extern":"1","author":[{"full_name":"Šarić, Anđela","orcid":"0000-0002-7854-2139","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","first_name":"Anđela","last_name":"Šarić"},{"first_name":"Angelo","last_name":"Cacciuto","full_name":"Cacciuto, Angelo"}],"external_id":{"arxiv":["1010.2453"]},"oa":1,"page":"1874-1878","article_type":"original","oa_version":"Preprint","_id":"10127","publication_status":"published","volume":7,"year":"2010","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","keyword":["condensed matter physics","general chemistry"],"date_updated":"2021-10-12T09:49:27Z"},{"intvolume":"        12","citation":{"ista":"Šarić A, Hrenar T, Mališ M, Došlić N. 2010. Quantum mechanical study of secondary structure formation in protected dipeptides. Physical Chemistry Chemical Physics. 12(18), 4678–4685.","apa":"Šarić, A., Hrenar, T., Mališ, M., &#38; Došlić, N. (2010). Quantum mechanical study of secondary structure formation in protected dipeptides. <i>Physical Chemistry Chemical Physics</i>. Royal Society of Chemistry . <a href=\"https://doi.org/10.1039/b923041f\">https://doi.org/10.1039/b923041f</a>","short":"A. Šarić, T. Hrenar, M. Mališ, N. Došlić, Physical Chemistry Chemical Physics 12 (2010) 4678–4685.","chicago":"Šarić, Anđela, T. Hrenar, M. Mališ, and N. Došlić. “Quantum Mechanical Study of Secondary Structure Formation in Protected Dipeptides.” <i>Physical Chemistry Chemical Physics</i>. Royal Society of Chemistry , 2010. <a href=\"https://doi.org/10.1039/b923041f\">https://doi.org/10.1039/b923041f</a>.","ieee":"A. Šarić, T. Hrenar, M. Mališ, and N. Došlić, “Quantum mechanical study of secondary structure formation in protected dipeptides,” <i>Physical Chemistry Chemical Physics</i>, vol. 12, no. 18. Royal Society of Chemistry , pp. 4678–4685, 2010.","ama":"Šarić A, Hrenar T, Mališ M, Došlić N. Quantum mechanical study of secondary structure formation in protected dipeptides. <i>Physical Chemistry Chemical Physics</i>. 2010;12(18):4678-4685. doi:<a href=\"https://doi.org/10.1039/b923041f\">10.1039/b923041f</a>","mla":"Šarić, Anđela, et al. “Quantum Mechanical Study of Secondary Structure Formation in Protected Dipeptides.” <i>Physical Chemistry Chemical Physics</i>, vol. 12, no. 18, Royal Society of Chemistry , 2010, pp. 4678–85, doi:<a href=\"https://doi.org/10.1039/b923041f\">10.1039/b923041f</a>."},"date_published":"2010-03-16T00:00:00Z","quality_controlled":"1","article_processing_charge":"No","publication":"Physical Chemistry Chemical Physics","pmid":1,"month":"03","publisher":"Royal Society of Chemistry ","language":[{"iso":"eng"}],"issue":"18","title":"Quantum mechanical study of secondary structure formation in protected dipeptides","publication_identifier":{"issn":["1463-9076","1463-9084"]},"main_file_link":[{"url":"https://europepmc.org/article/med/20428547"}],"date_created":"2021-10-12T08:44:34Z","doi":"10.1039/b923041f","status":"public","day":"16","type":"journal_article","acknowledgement":"This work has been supported by the MZOŠ projects 098-0352851-2921 and 119-1191342-2959.","oa_version":"None","_id":"10128","page":"4678-4685","article_type":"original","abstract":[{"text":"An extensive computational study of the conformational preferences of three capped dipeptides: Ac-Xxx-Phe-NH2, Xxx = Gly, Ala, Val is reported. On the basis of local second-order Møller–Plesset perturbation theory (LMP2) and DFT computations we were able to identify the experimentally observed conformers as γL–γL(g−) and β-turn I(g+) in Ac-Gly-Phe-NH2, and Ac-Ala-Phe-NH2, and as the closely related γL(g+)–γL(g−) and β-turn I(a,g+) in Ac-Val-Phe-NH2. In contrast to the experimental observation that peptides with bulky side chain have a propensity for β-turns, we show that in Ac-Val-Phe-NH2 the minimum energy structure corresponds to the experimentally non detected β-strand.","lang":"eng"}],"extern":"1","external_id":{"pmid":["20428547"]},"author":[{"orcid":"0000-0002-7854-2139","full_name":"Šarić, Anđela","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","first_name":"Anđela","last_name":"Šarić"},{"full_name":"Hrenar, T.","last_name":"Hrenar","first_name":"T."},{"full_name":"Mališ, M.","first_name":"M.","last_name":"Mališ"},{"full_name":"Došlić, N.","first_name":"N.","last_name":"Došlić"}],"keyword":["Physical and Theoretical Chemistry","General Physics and Astronomy"],"date_updated":"2021-10-12T09:49:22Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publication_status":"published","year":"2010","volume":12},{"acknowledgement":"This work was supported by the National Science Foundation under CAREER Grant No. DMR-0846426 and partly by Columbia University.","type":"journal_article","day":"15","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1010.2458"}],"doi":"10.1021/jp107545w","arxiv":1,"date_created":"2021-11-29T15:13:17Z","publication_identifier":{"eissn":["1520-5207"],"issn":["1520-6106"]},"scopus_import":"1","issue":"22","title":"Packing of soft asymmetric dumbbells","language":[{"iso":"eng"}],"publisher":"American Chemical Society","month":"10","pmid":1,"publication":"The Journal of Physical Chemistry B","article_processing_charge":"No","quality_controlled":"1","date_published":"2010-10-15T00:00:00Z","citation":{"short":"A. Šarić, B. Bozorgui, A. Cacciuto, The Journal of Physical Chemistry B 115 (2010) 7182–7189.","ista":"Šarić A, Bozorgui B, Cacciuto A. 2010. Packing of soft asymmetric dumbbells. The Journal of Physical Chemistry B. 115(22), 7182–7189.","apa":"Šarić, A., Bozorgui, B., &#38; Cacciuto, A. (2010). Packing of soft asymmetric dumbbells. <i>The Journal of Physical Chemistry B</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jp107545w\">https://doi.org/10.1021/jp107545w</a>","mla":"Šarić, Anđela, et al. “Packing of Soft Asymmetric Dumbbells.” <i>The Journal of Physical Chemistry B</i>, vol. 115, no. 22, American Chemical Society, 2010, pp. 7182–89, doi:<a href=\"https://doi.org/10.1021/jp107545w\">10.1021/jp107545w</a>.","ieee":"A. Šarić, B. Bozorgui, and A. Cacciuto, “Packing of soft asymmetric dumbbells,” <i>The Journal of Physical Chemistry B</i>, vol. 115, no. 22. American Chemical Society, pp. 7182–7189, 2010.","chicago":"Šarić, Anđela, Behnaz Bozorgui, and Angelo Cacciuto. “Packing of Soft Asymmetric Dumbbells.” <i>The Journal of Physical Chemistry B</i>. American Chemical Society, 2010. <a href=\"https://doi.org/10.1021/jp107545w\">https://doi.org/10.1021/jp107545w</a>.","ama":"Šarić A, Bozorgui B, Cacciuto A. Packing of soft asymmetric dumbbells. <i>The Journal of Physical Chemistry B</i>. 2010;115(22):7182-7189. doi:<a href=\"https://doi.org/10.1021/jp107545w\">10.1021/jp107545w</a>"},"intvolume":"       115","year":"2010","volume":115,"publication_status":"published","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_updated":"2021-11-29T16:20:29Z","keyword":["materials chemistry"],"author":[{"id":"bf63d406-f056-11eb-b41d-f263a6566d8b","full_name":"Šarić, Anđela","orcid":"0000-0002-7854-2139","last_name":"Šarić","first_name":"Anđela"},{"first_name":"Behnaz","last_name":"Bozorgui","full_name":"Bozorgui, Behnaz"},{"full_name":"Cacciuto, Angelo","last_name":"Cacciuto","first_name":"Angelo"}],"external_id":{"arxiv":["1010.2458"],"pmid":["20949934"]},"extern":"1","abstract":[{"lang":"eng","text":"We use numerical simulations to study the phase behavior of a system of purely repulsive soft dumbbells as a function of size ratio of the two components and their relative degree of deformability. We find a plethora of different phases, which includes most of the mesophases observed in self-assembly of block copolymers but also crystalline structures formed by asymmetric, hard binary mixtures. Our results detail the phenomenological behavior of these systems when softness is introduced in terms of two different classes of interparticle interactions: (a) the elastic Hertz potential, which has a finite energy cost for complete overlap of any two components, and (b) a generic power-law repulsion with tunable exponent. We discuss how simple geometric arguments can be used to account for the large structural variety observed in these systems and detail the similarities and differences in the phase behavior for the two classes of potentials under consideration."}],"page":"7182-7189","article_type":"original","oa":1,"_id":"10390","oa_version":"Preprint"},{"oa_version":"Preprint","_id":"10391","oa":1,"article_type":"original","extern":"1","abstract":[{"lang":"eng","text":"We use numerical simulations to show how a fully flexible filament binding to a deformable cylindrical surface may acquire a macroscopic persistence length and a helical conformation. This is a result of the nontrivial elastic response to deformations of elastic sheets. We find that the filament’s helical pitch is completely determined by the mechanical properties of the surface, and can be easily tuned by varying the surface stretching rigidity. We propose simple scaling arguments to understand the physical mechanism behind this phenomenon and present a phase diagram indicating under what conditions one should expect a fully flexible chain to behave as a helical semiflexible filament. Finally, we discuss the implications of our results."}],"author":[{"first_name":"Anđela","last_name":"Šarić","orcid":"0000-0002-7854-2139","full_name":"Šarić, Anđela","id":"bf63d406-f056-11eb-b41d-f263a6566d8b"},{"first_name":"Josep C.","last_name":"Pàmies","full_name":"Pàmies, Josep C."},{"first_name":"Angelo","last_name":"Cacciuto","full_name":"Cacciuto, Angelo"}],"external_id":{"arxiv":["1005.2429"],"pmid":["20867183"]},"keyword":["general physics and astronomy"],"date_updated":"2021-11-30T08:11:19Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publication_status":"published","year":"2010","volume":104,"intvolume":"       104","article_number":"226101","date_published":"2010-06-03T00:00:00Z","citation":{"short":"A. Šarić, J.C. Pàmies, A. Cacciuto, Physical Review Letters 104 (2010).","ista":"Šarić A, Pàmies JC, Cacciuto A. 2010. Effective elasticity of a flexible filament bound to a deformable cylindrical surface. Physical Review Letters. 104(22), 226101.","apa":"Šarić, A., Pàmies, J. C., &#38; Cacciuto, A. (2010). Effective elasticity of a flexible filament bound to a deformable cylindrical surface. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevlett.104.226101\">https://doi.org/10.1103/physrevlett.104.226101</a>","mla":"Šarić, Anđela, et al. “Effective Elasticity of a Flexible Filament Bound to a Deformable Cylindrical Surface.” <i>Physical Review Letters</i>, vol. 104, no. 22, 226101, American Physical Society, 2010, doi:<a href=\"https://doi.org/10.1103/physrevlett.104.226101\">10.1103/physrevlett.104.226101</a>.","ama":"Šarić A, Pàmies JC, Cacciuto A. Effective elasticity of a flexible filament bound to a deformable cylindrical surface. <i>Physical Review Letters</i>. 2010;104(22). doi:<a href=\"https://doi.org/10.1103/physrevlett.104.226101\">10.1103/physrevlett.104.226101</a>","chicago":"Šarić, Anđela, Josep C. Pàmies, and Angelo Cacciuto. “Effective Elasticity of a Flexible Filament Bound to a Deformable Cylindrical Surface.” <i>Physical Review Letters</i>. American Physical Society, 2010. <a href=\"https://doi.org/10.1103/physrevlett.104.226101\">https://doi.org/10.1103/physrevlett.104.226101</a>.","ieee":"A. Šarić, J. C. Pàmies, and A. Cacciuto, “Effective elasticity of a flexible filament bound to a deformable cylindrical surface,” <i>Physical Review Letters</i>, vol. 104, no. 22. American Physical Society, 2010."},"article_processing_charge":"No","quality_controlled":"1","publication":"Physical Review Letters","month":"06","pmid":1,"language":[{"iso":"eng"}],"publisher":"American Physical Society","issue":"22","title":"Effective elasticity of a flexible filament bound to a deformable cylindrical surface","scopus_import":"1","publication_identifier":{"eissn":["1079-7114"],"issn":["0031-9007"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1005.2429"}],"doi":"10.1103/physrevlett.104.226101","arxiv":1,"date_created":"2021-11-29T15:14:33Z","status":"public","day":"03","type":"journal_article","acknowledgement":"This work was supported by the National Science Foundation under Career Grant No. DMR-0846426."},{"publication_status":"published","day":"01","type":"conference","year":"2010","date_created":"2018-12-11T11:49:50Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1142/9789814282345_0024","status":"public","publist_id":"6346","title":"Production of a quantum gas of rovibronic ground-state molecules in an optical lattice","date_updated":"2021-01-12T06:47:52Z","month":"01","publisher":"World Scientific Publishing","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Recent years have seen tremendous progress in the field of cold and ultracold molecules. A central goal in the field is currently the realization of stable rovibronic ground-state molecular samples in the regime of quantum degeneracy, e.g. in the form of molecular Bose-Einstein condensates, molecular degenerate Fermi gases, or, when an optical lattice is present, molecular Mott-insulator phases. However, molecular samples are not readily cooled to the extremely low temperatures at which quantum degeneracy occurs. In particular, laser cooling, the \\'workhorse\\' for the field of atomic quantum gases, is generally not applicable to molecular samples. Here we take an important step beyond previous work1 and provide details on the realization of an ultracold quantum gas of ground-state dimer molecules trapped in an optical lattice as recently reported in Ref. 2. We demonstrate full control over all internal and external quantum degrees of freedom for the ground-state molecules by deterministically preparing the molecules in a single quantum state, i.e. in a specific hyperfine sublevel of the rovibronic ground state, while the molecules are trapped in the motional ground state of the individual lattice wells. We circumvent the problem of cooling by associating weakly-bound molecules out of a zero-temperature atomic Mott-insulator state and by transferring these to the absolute ground state in a four-photon STIRAP process. Our preparation procedure directly leads to a long-lived, lattice-trapped molecular many-body state, which we expect to form the platform for many of the envisioned future experiments with molecular quantum gases, e.g. on precision molecular spectroscopy, quantum information science, and dipolar quantum systems."}],"extern":"1","article_processing_charge":"No","author":[{"last_name":"Danzl","first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973"},{"first_name":"Manfred","last_name":"Mark","full_name":"Mark, Manfred"},{"full_name":"Haller, Elmar","last_name":"Haller","first_name":"Elmar"},{"full_name":"Gustavsson, Mattias","last_name":"Gustavsson","first_name":"Mattias"},{"last_name":"Hart","first_name":"Russell","full_name":"Hart, Russell"},{"full_name":"Nägerl, Hanns","first_name":"Hanns","last_name":"Nägerl"}],"citation":{"mla":"Danzl, Johann G., et al. <i>Production of a Quantum Gas of Rovibronic Ground-State Molecules in an Optical Lattice</i>. World Scientific Publishing, 2010, pp. 256–69, doi:<a href=\"https://doi.org/10.1142/9789814282345_0024\">10.1142/9789814282345_0024</a>.","ieee":"J. G. Danzl, M. Mark, E. Haller, M. Gustavsson, R. Hart, and H. Nägerl, “Production of a quantum gas of rovibronic ground-state molecules in an optical lattice,” presented at the ICOLS: International Conference on Laser Spectroscopy, 2010, pp. 256–269.","chicago":"Danzl, Johann G, Manfred Mark, Elmar Haller, Mattias Gustavsson, Russell Hart, and Hanns Nägerl. “Production of a Quantum Gas of Rovibronic Ground-State Molecules in an Optical Lattice,” 256–69. World Scientific Publishing, 2010. <a href=\"https://doi.org/10.1142/9789814282345_0024\">https://doi.org/10.1142/9789814282345_0024</a>.","ama":"Danzl JG, Mark M, Haller E, Gustavsson M, Hart R, Nägerl H. Production of a quantum gas of rovibronic ground-state molecules in an optical lattice. In: World Scientific Publishing; 2010:256-269. doi:<a href=\"https://doi.org/10.1142/9789814282345_0024\">10.1142/9789814282345_0024</a>","short":"J.G. Danzl, M. Mark, E. Haller, M. Gustavsson, R. Hart, H. Nägerl, in:, World Scientific Publishing, 2010, pp. 256–269.","ista":"Danzl JG, Mark M, Haller E, Gustavsson M, Hart R, Nägerl H. 2010. Production of a quantum gas of rovibronic ground-state molecules in an optical lattice. ICOLS: International Conference on Laser Spectroscopy, 256–269.","apa":"Danzl, J. G., Mark, M., Haller, E., Gustavsson, M., Hart, R., &#38; Nägerl, H. (2010). Production of a quantum gas of rovibronic ground-state molecules in an optical lattice (pp. 256–269). Presented at the ICOLS: International Conference on Laser Spectroscopy, World Scientific Publishing. <a href=\"https://doi.org/10.1142/9789814282345_0024\">https://doi.org/10.1142/9789814282345_0024</a>"},"date_published":"2010-01-01T00:00:00Z","page":"256 - 269","conference":{"name":"ICOLS: International Conference on Laser Spectroscopy"},"oa_version":"None","_id":"1042"},{"date_updated":"2021-01-12T06:47:53Z","year":"2010","volume":6,"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","page":"265 - 270","oa":1,"_id":"1044","oa_version":"Preprint","author":[{"orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G","last_name":"Danzl"},{"last_name":"Mark","first_name":"Manfred","full_name":"Mark, Manfred"},{"first_name":"Elmar","last_name":"Haller","full_name":"Haller, Elmar"},{"first_name":"Mattias","last_name":"Gustavsson","full_name":"Gustavsson, Mattias"},{"full_name":"Hart, Russell","first_name":"Russell","last_name":"Hart"},{"full_name":"Aldegunde, Jesus","first_name":"Jesus","last_name":"Aldegunde"},{"full_name":"Hutson, Jeremy","first_name":"Jeremy","last_name":"Hutson"},{"full_name":"Nägerl, Hanns","last_name":"Nägerl","first_name":"Hanns"}],"external_id":{"arxiv":["0909.4700"]},"abstract":[{"lang":"eng","text":"Control over all internal and external degrees of freedom of molecules at the level of single quantum states will enable a series of fundamental studies in physics and chemistry1,2. In particular, samples of ground-state molecules at ultralow temperatures and high number densities will facilitate new quantum-gas studies3 and future applications in quantum information science4. However, high phase-space densities for molecular samples are not readily attainable because efficient cooling techniques such as laser cooling are lacking. Here we produce an ultracold and dense sample of molecules in a single hyperfine level of the rovibronic ground state with each molecule individually trapped in the motional ground state of an optical lattice well. Starting from a zero-temperature atomic Mott-insulator state with optimized double-site occupancy6, weakly bound dimer molecules are efficiently associated on a Feshbach resonance7 and subsequently transferred to the rovibronic ground state by a stimulated four-photon process with &gt;50% efficiency. The molecules are trapped in the lattice and have a lifetime of 8 s. Our results present a crucial step towards Bose-Einstein condensation of ground-state molecules and, when suitably generalized to polar heteronuclear molecules, the realization of dipolar quantum-gas phases in optical lattices8-10."}],"extern":"1","publist_id":"6345","title":"An ultracold high-density sample of rovibronic ground-state molecules in an optical lattice","issue":"4","acknowledgement":"We thank H. Ritsch, S. Dürr, N. Bouloufa and O. Dulieu for valuable discussions. We are indebted to R. Grimm for generous support and to H. Häffner for the loan of a charge-coupled camera. We gratefully acknowledge financial support by the Austrian Ministry of Science and Research (Bundesministerium für Wissenschaft und Forschung) and the Austrian Science Fund (Fonds zur Förderung der wissenschaftlichen Forschung) in the form of a START prize grant and by the European Science Foundation within the framework of the EuroQUASAR collective research project QuDeGPM and within the framework of the EuroQUAM collective research project QuDipMol. R.H. is supported by a Marie Curie International Incoming Fellowship within the 7th European Community Framework Programme.","type":"journal_article","day":"04","status":"public","doi":"10.1038/nphys1533","date_created":"2018-12-11T11:49:51Z","arxiv":1,"main_file_link":[{"url":"https://arxiv.org/abs/0909.4700","open_access":"1"}],"date_published":"2010-04-04T00:00:00Z","citation":{"chicago":"Danzl, Johann G, Manfred Mark, Elmar Haller, Mattias Gustavsson, Russell Hart, Jesus Aldegunde, Jeremy Hutson, and Hanns Nägerl. “An Ultracold High-Density Sample of Rovibronic Ground-State Molecules in an Optical Lattice.” <i>Nature Physics</i>. Nature Publishing Group, 2010. <a href=\"https://doi.org/10.1038/nphys1533\">https://doi.org/10.1038/nphys1533</a>.","ieee":"J. G. Danzl <i>et al.</i>, “An ultracold high-density sample of rovibronic ground-state molecules in an optical lattice,” <i>Nature Physics</i>, vol. 6, no. 4. Nature Publishing Group, pp. 265–270, 2010.","ama":"Danzl JG, Mark M, Haller E, et al. An ultracold high-density sample of rovibronic ground-state molecules in an optical lattice. <i>Nature Physics</i>. 2010;6(4):265-270. doi:<a href=\"https://doi.org/10.1038/nphys1533\">10.1038/nphys1533</a>","mla":"Danzl, Johann G., et al. “An Ultracold High-Density Sample of Rovibronic Ground-State Molecules in an Optical Lattice.” <i>Nature Physics</i>, vol. 6, no. 4, Nature Publishing Group, 2010, pp. 265–70, doi:<a href=\"https://doi.org/10.1038/nphys1533\">10.1038/nphys1533</a>.","ista":"Danzl JG, Mark M, Haller E, Gustavsson M, Hart R, Aldegunde J, Hutson J, Nägerl H. 2010. An ultracold high-density sample of rovibronic ground-state molecules in an optical lattice. Nature Physics. 6(4), 265–270.","apa":"Danzl, J. G., Mark, M., Haller, E., Gustavsson, M., Hart, R., Aldegunde, J., … Nägerl, H. (2010). An ultracold high-density sample of rovibronic ground-state molecules in an optical lattice. <i>Nature Physics</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nphys1533\">https://doi.org/10.1038/nphys1533</a>","short":"J.G. Danzl, M. Mark, E. Haller, M. Gustavsson, R. Hart, J. Aldegunde, J. Hutson, H. Nägerl, Nature Physics 6 (2010) 265–270."},"intvolume":"         6","language":[{"iso":"eng"}],"publisher":"Nature Publishing Group","month":"04","publication":"Nature Physics","article_processing_charge":"No"},{"date_updated":"2021-01-12T06:47:53Z","year":"2010","volume":104,"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"_id":"1045","oa_version":"Preprint","author":[{"first_name":"Elmar","last_name":"Haller","full_name":"Haller, Elmar"},{"full_name":"Mark, Manfred","last_name":"Mark","first_name":"Manfred"},{"first_name":"Russell","last_name":"Hart","full_name":"Hart, Russell"},{"orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G","last_name":"Danzl"},{"last_name":"Reichsöllner","first_name":"Lukas","full_name":"Reichsöllner, Lukas"},{"first_name":"Vladimir","last_name":"Melezhik","full_name":"Melezhik, Vladimir"},{"full_name":"Schmelcher, Peter","last_name":"Schmelcher","first_name":"Peter"},{"full_name":"Nägerl, Hanns","last_name":"Nägerl","first_name":"Hanns"}],"external_id":{"arxiv":["1002.3795"]},"extern":"1","abstract":[{"text":"We report on the observation of confinement-induced resonances in strongly interacting quantum-gas systems with tunable interactions for one- and two-dimensional geometry. Atom-atom scattering is substantially modified when the s-wave scattering length approaches the length scale associated with the tight transversal confinement, leading to characteristic loss and heating signatures. Upon introducing an anisotropy for the transversal confinement we observe a splitting of the confinement-induced resonance. With increasing anisotropy additional resonances appear. In the limit of a two-dimensional system we find that one resonance persists.","lang":"eng"}],"publist_id":"6344","issue":"15","title":"Confinement-induced resonances in low-dimensional quantum systems","acknowledgement":"We thank W. Zwerger for discussions and R. Grimm for generous support. We acknowledge funding by the Austrian Science Fund and by the European Union within the framework of the EuroQUASAR collective research project QuDeGPM. R. H. is supported by a Marie Curie Fellowship within FP7. P. S. acknowledges financial support by the DFG. Financial support by the Heisenberg-Landau Program is appreciated by P. S. and V. M.","type":"journal_article","day":"14","status":"public","arxiv":1,"main_file_link":[{"url":"https://arxiv.org/abs/1002.3795","open_access":"1"}],"doi":"10.1103/PhysRevLett.104.153203","date_created":"2018-12-11T11:49:51Z","date_published":"2010-04-14T00:00:00Z","citation":{"mla":"Haller, Elmar, et al. “Confinement-Induced Resonances in Low-Dimensional Quantum Systems.” <i>Physical Review Letters</i>, vol. 104, no. 15, American Physical Society, 2010, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.104.153203\">10.1103/PhysRevLett.104.153203</a>.","ama":"Haller E, Mark M, Hart R, et al. Confinement-induced resonances in low-dimensional quantum systems. <i>Physical Review Letters</i>. 2010;104(15). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.104.153203\">10.1103/PhysRevLett.104.153203</a>","chicago":"Haller, Elmar, Manfred Mark, Russell Hart, Johann G Danzl, Lukas Reichsöllner, Vladimir Melezhik, Peter Schmelcher, and Hanns Nägerl. “Confinement-Induced Resonances in Low-Dimensional Quantum Systems.” <i>Physical Review Letters</i>. American Physical Society, 2010. <a href=\"https://doi.org/10.1103/PhysRevLett.104.153203\">https://doi.org/10.1103/PhysRevLett.104.153203</a>.","ieee":"E. Haller <i>et al.</i>, “Confinement-induced resonances in low-dimensional quantum systems,” <i>Physical Review Letters</i>, vol. 104, no. 15. American Physical Society, 2010.","short":"E. Haller, M. Mark, R. Hart, J.G. Danzl, L. Reichsöllner, V. Melezhik, P. Schmelcher, H. Nägerl, Physical Review Letters 104 (2010).","ista":"Haller E, Mark M, Hart R, Danzl JG, Reichsöllner L, Melezhik V, Schmelcher P, Nägerl H. 2010. Confinement-induced resonances in low-dimensional quantum systems. Physical Review Letters. 104(15).","apa":"Haller, E., Mark, M., Hart, R., Danzl, J. G., Reichsöllner, L., Melezhik, V., … Nägerl, H. (2010). Confinement-induced resonances in low-dimensional quantum systems. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.104.153203\">https://doi.org/10.1103/PhysRevLett.104.153203</a>"},"intvolume":"       104","language":[{"iso":"eng"}],"publisher":"American Physical Society","month":"04","publication":"Physical Review Letters","article_processing_charge":"No"},{"date_updated":"2021-01-12T06:47:53Z","title":"Interference of interacting matter waves","publist_id":"6342","status":"public","date_created":"2018-12-11T11:49:51Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1088/1367-2630/12/6/065029","year":"2010","volume":12,"acknowledgement":"We thank E Arimondo, O Morsch, W Schleich, A Smerzi, D Witthaut and A Buchleitner and his group for helpful discussions. We also thank R Grimm for generous support. We gratefully acknowledge funding from the Austrian Ministry of Science and Research (Bundesministerium für Wissenschaft und Forschung) and the Austrian Science Fund (Fonds zur Förderung der wissenschaftlichen Forschung) in the form of a START prize grant and through SFB 15. RH is supported by a Marie Curie International Incoming Fellowship within the 7th European Community Framework Programme.","publication_status":"published","type":"journal_article","day":"28","_id":"1046","intvolume":"        12","oa_version":"None","citation":{"mla":"Gustavsson, Mattias, et al. “Interference of Interacting Matter Waves.” <i>New Journal of Physics</i>, vol. 12, IOP Publishing Ltd., 2010, doi:<a href=\"https://doi.org/10.1088/1367-2630/12/6/065029\">10.1088/1367-2630/12/6/065029</a>.","ama":"Gustavsson M, Haller E, Mark M, et al. Interference of interacting matter waves. <i>New Journal of Physics</i>. 2010;12. doi:<a href=\"https://doi.org/10.1088/1367-2630/12/6/065029\">10.1088/1367-2630/12/6/065029</a>","ieee":"M. Gustavsson <i>et al.</i>, “Interference of interacting matter waves,” <i>New Journal of Physics</i>, vol. 12. IOP Publishing Ltd., 2010.","chicago":"Gustavsson, Mattias, Elmar Haller, Manfred Mark, Johann G Danzl, Russell Hart, Andrew Daley, and Hanns Nägerl. “Interference of Interacting Matter Waves.” <i>New Journal of Physics</i>. IOP Publishing Ltd., 2010. <a href=\"https://doi.org/10.1088/1367-2630/12/6/065029\">https://doi.org/10.1088/1367-2630/12/6/065029</a>.","short":"M. Gustavsson, E. Haller, M. Mark, J.G. Danzl, R. Hart, A. Daley, H. Nägerl, New Journal of Physics 12 (2010).","apa":"Gustavsson, M., Haller, E., Mark, M., Danzl, J. G., Hart, R., Daley, A., &#38; Nägerl, H. (2010). Interference of interacting matter waves. <i>New Journal of Physics</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/1367-2630/12/6/065029\">https://doi.org/10.1088/1367-2630/12/6/065029</a>","ista":"Gustavsson M, Haller E, Mark M, Danzl JG, Hart R, Daley A, Nägerl H. 2010. Interference of interacting matter waves. New Journal of Physics. 12."},"date_published":"2010-06-28T00:00:00Z","publication":"New Journal of Physics","author":[{"last_name":"Gustavsson","first_name":"Mattias","full_name":"Gustavsson, Mattias"},{"last_name":"Haller","first_name":"Elmar","full_name":"Haller, Elmar"},{"first_name":"Manfred","last_name":"Mark","full_name":"Mark, Manfred"},{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973","last_name":"Danzl","first_name":"Johann G"},{"full_name":"Hart, Russell","first_name":"Russell","last_name":"Hart"},{"last_name":"Daley","first_name":"Andrew","full_name":"Daley, Andrew"},{"full_name":"Nägerl, Hanns","first_name":"Hanns","last_name":"Nägerl"}],"abstract":[{"lang":"eng","text":"The phenomenon of matter-wave interference lies at the heart of quantum physics. It has been observed in various contexts in the limit of non-interacting particles as a single-particle effect. Here we observe and control matter-wave interference whose evolution is driven by interparticle interactions. In a multi-path matter-wave interferometer, the macroscopic manybody wave function of an interacting atomic Bose-Einstein condensate develops a regular interference pattern, allowing us to detect and directly visualize the effect of interaction-induced phase shifts. We demonstrate control over the phase evolution by inhibiting interaction-induced dephasing and by refocusing a dephased macroscopic matter wave in a spin-echo-type experiment. Our results show that interactions in a many-body system lead to a surprisingly coherent evolution, possibly enabling narrow-band and high-brightness matterwave interferometers based on atom lasers."}],"extern":"1","article_processing_charge":"No","publisher":"IOP Publishing Ltd.","language":[{"iso":"eng"}],"month":"06"},{"date_created":"2018-12-11T11:49:52Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1001.1206"}],"doi":"10.1103/PhysRevLett.104.200403","arxiv":1,"status":"public","type":"journal_article","day":"21","acknowledgement":"We thank A. R. Kolovsky, A. Zenesini, and A. Wacker for discussions and R. Grimm for generous support. We acknowledge funding by the Austrian Ministry of Science and Research and the Austrian Science Fund and by the European Union within the framework of the EuroQUASAR collective research project QuDeGPM. R. H. is supported by a Marie Curie Action within FP7.","title":"Inducing transport in a dissipation-free lattice with super bloch oscillations","issue":"20","publist_id":"6343","article_processing_charge":"No","publication":"Physical Review Letters","month":"05","publisher":"American Physical Society","language":[{"iso":"eng"}],"intvolume":"       104","citation":{"ista":"Haller E, Hart R, Mark M, Danzl JG, Reichsöllner L, Nägerl H. 2010. Inducing transport in a dissipation-free lattice with super bloch oscillations. Physical Review Letters. 104(20).","apa":"Haller, E., Hart, R., Mark, M., Danzl, J. G., Reichsöllner, L., &#38; Nägerl, H. (2010). Inducing transport in a dissipation-free lattice with super bloch oscillations. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.104.200403\">https://doi.org/10.1103/PhysRevLett.104.200403</a>","short":"E. Haller, R. Hart, M. Mark, J.G. Danzl, L. Reichsöllner, H. Nägerl, Physical Review Letters 104 (2010).","ama":"Haller E, Hart R, Mark M, Danzl JG, Reichsöllner L, Nägerl H. Inducing transport in a dissipation-free lattice with super bloch oscillations. <i>Physical Review Letters</i>. 2010;104(20). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.104.200403\">10.1103/PhysRevLett.104.200403</a>","chicago":"Haller, Elmar, Russell Hart, Manfred Mark, Johann G Danzl, Lukas Reichsöllner, and Hanns Nägerl. “Inducing Transport in a Dissipation-Free Lattice with Super Bloch Oscillations.” <i>Physical Review Letters</i>. American Physical Society, 2010. <a href=\"https://doi.org/10.1103/PhysRevLett.104.200403\">https://doi.org/10.1103/PhysRevLett.104.200403</a>.","ieee":"E. Haller, R. Hart, M. Mark, J. G. Danzl, L. Reichsöllner, and H. Nägerl, “Inducing transport in a dissipation-free lattice with super bloch oscillations,” <i>Physical Review Letters</i>, vol. 104, no. 20. American Physical Society, 2010.","mla":"Haller, Elmar, et al. “Inducing Transport in a Dissipation-Free Lattice with Super Bloch Oscillations.” <i>Physical Review Letters</i>, vol. 104, no. 20, American Physical Society, 2010, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.104.200403\">10.1103/PhysRevLett.104.200403</a>."},"date_published":"2010-05-21T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","volume":104,"year":"2010","date_updated":"2021-01-12T06:47:54Z","extern":"1","abstract":[{"lang":"eng","text":"Particles in a perfect lattice potential perform Bloch oscillations when subject to a constant force, leading to localization and preventing conductivity. For a weakly interacting Bose-Einstein condensate of Cs atoms, we observe giant center-of-mass oscillations in position space with a displacement across hundreds of lattice sites when we add a periodic modulation to the force near the Bloch frequency. We study the dependence of these &quot;super&quot; Bloch oscillations on lattice depth, modulation amplitude, and modulation frequency and show that they provide a means to induce linear transport in a dissipation-free lattice."}],"external_id":{"arxiv":["1001.1206"]},"author":[{"full_name":"Haller, Elmar","last_name":"Haller","first_name":"Elmar"},{"full_name":"Hart, Russell","first_name":"Russell","last_name":"Hart"},{"full_name":"Mark, Manfred","first_name":"Manfred","last_name":"Mark"},{"first_name":"Johann G","last_name":"Danzl","full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Reichsöllner, Lukas","last_name":"Reichsöllner","first_name":"Lukas"},{"full_name":"Nägerl, Hanns","last_name":"Nägerl","first_name":"Hanns"}],"oa_version":"Preprint","_id":"1047","oa":1},{"issue":"7306","title":"Pinning quantum phase transition for a Luttinger liquid of strongly interacting bosons","publist_id":"6341","date_created":"2018-12-11T11:49:52Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1004.3168"}],"arxiv":1,"doi":"10.1038/nature09259","status":"public","type":"journal_article","day":"29","acknowledgement":"We thank W. Zwerger for discussions. We are indebted to R. Grimm for generous support. We gratefully acknowledge funding by the Austrian Ministry of Science and Research (Bundesministerium für Wissenschaft und Forschung) and the Austrian Science Fund (Fonds zur Förderung der wissenschaftlichen Forschung) in the form of a START prize grant, and by the European Union through the STREP FP7-ICT-2007-C project NAME-QUAM (Nanodesigning of Atomic and Molecular Quantum Matter) and within the framework of the EuroQUASAR collective research project QuDeGPM. R.H. is supported by a Marie Curie International Incoming Fellowship within the 7th European Community Framework Programme.","intvolume":"       466","date_published":"2010-07-29T00:00:00Z","citation":{"ista":"Haller E, Hart R, Mark M, Danzl JG, Reichsöllner L, Gustavsson M, Dalmonte M, Pupillo G, Nägerl H. 2010. Pinning quantum phase transition for a Luttinger liquid of strongly interacting bosons. Nature. 466(7306), 597–600.","apa":"Haller, E., Hart, R., Mark, M., Danzl, J. G., Reichsöllner, L., Gustavsson, M., … Nägerl, H. (2010). Pinning quantum phase transition for a Luttinger liquid of strongly interacting bosons. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature09259\">https://doi.org/10.1038/nature09259</a>","short":"E. Haller, R. Hart, M. Mark, J.G. Danzl, L. Reichsöllner, M. Gustavsson, M. Dalmonte, G. Pupillo, H. Nägerl, Nature 466 (2010) 597–600.","ieee":"E. Haller <i>et al.</i>, “Pinning quantum phase transition for a Luttinger liquid of strongly interacting bosons,” <i>Nature</i>, vol. 466, no. 7306. Nature Publishing Group, pp. 597–600, 2010.","chicago":"Haller, Elmar, Russell Hart, Manfred Mark, Johann G Danzl, Lukas Reichsöllner, Mattias Gustavsson, Marcello Dalmonte, Guido Pupillo, and Hanns Nägerl. “Pinning Quantum Phase Transition for a Luttinger Liquid of Strongly Interacting Bosons.” <i>Nature</i>. Nature Publishing Group, 2010. <a href=\"https://doi.org/10.1038/nature09259\">https://doi.org/10.1038/nature09259</a>.","ama":"Haller E, Hart R, Mark M, et al. Pinning quantum phase transition for a Luttinger liquid of strongly interacting bosons. <i>Nature</i>. 2010;466(7306):597-600. doi:<a href=\"https://doi.org/10.1038/nature09259\">10.1038/nature09259</a>","mla":"Haller, Elmar, et al. “Pinning Quantum Phase Transition for a Luttinger Liquid of Strongly Interacting Bosons.” <i>Nature</i>, vol. 466, no. 7306, Nature Publishing Group, 2010, pp. 597–600, doi:<a href=\"https://doi.org/10.1038/nature09259\">10.1038/nature09259</a>."},"article_processing_charge":"No","publication":"Nature","month":"07","language":[{"iso":"eng"}],"publisher":"Nature Publishing Group","date_updated":"2021-01-12T06:47:54Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","volume":466,"year":"2010","oa_version":"Preprint","_id":"1049","oa":1,"page":"597 - 600","abstract":[{"text":"Quantum many-body systems can have phase transitions even at zero temperature; fluctuations arising from Heisenbergĝ€™s uncertainty principle, as opposed to thermal effects, drive the system from one phase to another. Typically, during the transition the relative strength of two competing terms in the systemĝ€™s Hamiltonian changes across a finite critical value. A well-known example is the Mottĝ€&quot; Hubbard quantum phase transition from a superfluid to an insulating phase, which has been observed for weakly interacting bosonic atomic gases. However, for strongly interacting quantum systems confined to lower-dimensional geometry, a novel type of quantum phase transition may be induced and driven by an arbitrarily weak perturbation to the Hamiltonian. Here we observe such an effectĝ€&quot;the sineĝ€&quot;Gordon quantum phase transition from a superfluid Luttinger liquid to a Mott insulatorĝ€ &quot;in a one-dimensional quantum gas of bosonic caesium atoms with tunable interactions. For sufficiently strong interactions, the transition is induced by adding an arbitrarily weak optical lattice commensurate with the atomic granularity, which leads to immediate pinning of the atoms. We map out the phase diagram and find that our measurements in the strongly interacting regime agree well with a quantum field description based on the exactly solvable sineĝ€&quot;Gordon model. We trace the phase boundary all the way to the weakly interacting regime, where we find good agreement with the predictions of the one-dimensional Boseĝ€&quot;Hubbard model. Our results open up the experimental study of quantum phase transitions, criticality and transport phenomena beyond Hubbard-type models in the context of ultracold gases.","lang":"eng"}],"extern":"1","author":[{"last_name":"Haller","first_name":"Elmar","full_name":"Haller, Elmar"},{"full_name":"Hart, Russell","first_name":"Russell","last_name":"Hart"},{"full_name":"Mark, Manfred","first_name":"Manfred","last_name":"Mark"},{"orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G","last_name":"Danzl"},{"full_name":"Reichsöllner, Lukas","last_name":"Reichsöllner","first_name":"Lukas"},{"last_name":"Gustavsson","first_name":"Mattias","full_name":"Gustavsson, Mattias"},{"first_name":"Marcello","last_name":"Dalmonte","full_name":"Dalmonte, Marcello"},{"last_name":"Pupillo","first_name":"Guido","full_name":"Pupillo, Guido"},{"last_name":"Nägerl","first_name":"Hanns","full_name":"Nägerl, Hanns"}],"external_id":{"arxiv":["1004.3168"]}},{"abstract":[{"text":"Eukaryotic cytosine methylation represses transcription but also occurs in the bodies of active genes, and the extent of methylation biology conservation is unclear. We quantified DNA methylation in 17 eukaryotic genomes and found that gene body methylation is conserved between plants and animals, whereas selective methylation of transposons is not. We show that methylation of plant transposons in the CHG context extends to green algae and that exclusion of histone H2A.Z from methylated DNA is conserved between plants and animals, and we present evidence for RNA-directed DNA methylation of fungal genes. Our data demonstrate that extant DNA methylation systems are mosaics of conserved and derived features, and indicate that gene body methylation is an ancient property of eukaryotic genomes.","lang":"eng"}],"extern":"1","external_id":{"pmid":["20395474 "]},"author":[{"last_name":"Zemach","first_name":"Assaf ","full_name":"Zemach, Assaf "},{"full_name":"McDaniel, Ivy E.","first_name":"Ivy E.","last_name":"McDaniel"},{"first_name":"Pedro","last_name":"Silva","full_name":"Silva, Pedro"},{"last_name":"Zilberman","first_name":"Daniel","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649"}],"department":[{"_id":"DaZi"}],"oa_version":"None","_id":"9452","article_type":"original","page":"916-919","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publication_status":"published","volume":328,"year":"2010","keyword":["Multidisciplinary"],"date_updated":"2021-12-14T08:35:37Z","quality_controlled":"1","article_processing_charge":"No","publication":"Science","pmid":1,"month":"05","publisher":"American Association for the Advancement of Science","language":[{"iso":"eng"}],"intvolume":"       328","citation":{"short":"A. Zemach, I.E. McDaniel, P. Silva, D. Zilberman, Science 328 (2010) 916–919.","ista":"Zemach A, McDaniel IE, Silva P, Zilberman D. 2010. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science. 328(5980), 916–919.","apa":"Zemach, A., McDaniel, I. E., Silva, P., &#38; Zilberman, D. (2010). Genome-wide evolutionary analysis of eukaryotic DNA methylation. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1186366\">https://doi.org/10.1126/science.1186366</a>","mla":"Zemach, Assaf, et al. “Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation.” <i>Science</i>, vol. 328, no. 5980, American Association for the Advancement of Science, 2010, pp. 916–19, doi:<a href=\"https://doi.org/10.1126/science.1186366\">10.1126/science.1186366</a>.","chicago":"Zemach, Assaf , Ivy E. McDaniel, Pedro Silva, and Daniel Zilberman. “Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation.” <i>Science</i>. American Association for the Advancement of Science, 2010. <a href=\"https://doi.org/10.1126/science.1186366\">https://doi.org/10.1126/science.1186366</a>.","ieee":"A. Zemach, I. E. McDaniel, P. Silva, and D. Zilberman, “Genome-wide evolutionary analysis of eukaryotic DNA methylation,” <i>Science</i>, vol. 328, no. 5980. American Association for the Advancement of Science, pp. 916–919, 2010.","ama":"Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. <i>Science</i>. 2010;328(5980):916-919. doi:<a href=\"https://doi.org/10.1126/science.1186366\">10.1126/science.1186366</a>"},"date_published":"2010-05-14T00:00:00Z","doi":"10.1126/science.1186366","date_created":"2021-06-04T08:26:08Z","status":"public","type":"journal_article","day":"14","title":"Genome-wide evolutionary analysis of eukaryotic DNA methylation","issue":"5980","scopus_import":"1","publication_identifier":{"eissn":["1095-9203"],"issn":["0036-8075"]}},{"department":[{"_id":"DaZi"}],"author":[{"full_name":"Zemach, Assaf","first_name":"Assaf","last_name":"Zemach"},{"full_name":"Kim, M. Yvonne","last_name":"Kim","first_name":"M. Yvonne"},{"last_name":"Silva","first_name":"Pedro","full_name":"Silva, Pedro"},{"last_name":"Rodrigues","first_name":"Jessica A.","full_name":"Rodrigues, Jessica A."},{"full_name":"Dotson, Bradley","first_name":"Bradley","last_name":"Dotson"},{"full_name":"Brooks, Matthew D.","first_name":"Matthew D.","last_name":"Brooks"},{"full_name":"Zilberman, Daniel","orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","first_name":"Daniel","last_name":"Zilberman"}],"external_id":{"pmid":["20937895"]},"extern":"1","abstract":[{"text":"Cytosine methylation silences transposable elements in plants, vertebrates, and fungi but also regulates gene expression. Plant methylation is catalyzed by three families of enzymes, each with a preferred sequence context: CG, CHG (H = A, C, or T), and CHH, with CHH methylation targeted by the RNAi pathway. Arabidopsis thaliana endosperm, a placenta-like tissue that nourishes the embryo, is globally hypomethylated in the CG context while retaining high non-CG methylation. Global methylation dynamics in seeds of cereal crops that provide the bulk of human nutrition remain unknown. Here, we show that rice endosperm DNA is hypomethylated in all sequence contexts. Non-CG methylation is reduced evenly across the genome, whereas CG hypomethylation is localized. CHH methylation of small transposable elements is increased in embryos, suggesting that endosperm demethylation enhances transposon silencing. Genes preferentially expressed in endosperm, including those coding for major storage proteins and starch synthesizing enzymes, are frequently hypomethylated in endosperm, indicating that DNA methylation is a crucial regulator of rice endosperm biogenesis. Our data show that genome-wide reshaping of seed DNA methylation is conserved among angiosperms and has a profound effect on gene expression in cereal crops.","lang":"eng"}],"article_type":"original","page":"18729-18734","oa":1,"_id":"9485","oa_version":"Published Version","year":"2010","volume":107,"publication_status":"published","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_updated":"2021-12-14T08:40:02Z","language":[{"iso":"eng"}],"publisher":"National Academy of Sciences","month":"10","pmid":1,"publication":"Proceedings of the National Academy of Sciences","article_processing_charge":"No","quality_controlled":"1","date_published":"2010-10-26T00:00:00Z","citation":{"apa":"Zemach, A., Kim, M. Y., Silva, P., Rodrigues, J. A., Dotson, B., Brooks, M. D., &#38; Zilberman, D. (2010). Local DNA hypomethylation activates genes in rice endosperm. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1009695107\">https://doi.org/10.1073/pnas.1009695107</a>","ista":"Zemach A, Kim MY, Silva P, Rodrigues JA, Dotson B, Brooks MD, Zilberman D. 2010. Local DNA hypomethylation activates genes in rice endosperm. Proceedings of the National Academy of Sciences. 107(43), 18729–18734.","short":"A. Zemach, M.Y. Kim, P. Silva, J.A. Rodrigues, B. Dotson, M.D. Brooks, D. Zilberman, Proceedings of the National Academy of Sciences 107 (2010) 18729–18734.","ama":"Zemach A, Kim MY, Silva P, et al. Local DNA hypomethylation activates genes in rice endosperm. <i>Proceedings of the National Academy of Sciences</i>. 2010;107(43):18729-18734. doi:<a href=\"https://doi.org/10.1073/pnas.1009695107\">10.1073/pnas.1009695107</a>","chicago":"Zemach, Assaf, M. Yvonne Kim, Pedro Silva, Jessica A. Rodrigues, Bradley Dotson, Matthew D. Brooks, and Daniel Zilberman. “Local DNA Hypomethylation Activates Genes in Rice Endosperm.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2010. <a href=\"https://doi.org/10.1073/pnas.1009695107\">https://doi.org/10.1073/pnas.1009695107</a>.","ieee":"A. Zemach <i>et al.</i>, “Local DNA hypomethylation activates genes in rice endosperm,” <i>Proceedings of the National Academy of Sciences</i>, vol. 107, no. 43. National Academy of Sciences, pp. 18729–18734, 2010.","mla":"Zemach, Assaf, et al. “Local DNA Hypomethylation Activates Genes in Rice Endosperm.” <i>Proceedings of the National Academy of Sciences</i>, vol. 107, no. 43, National Academy of Sciences, 2010, pp. 18729–34, doi:<a href=\"https://doi.org/10.1073/pnas.1009695107\">10.1073/pnas.1009695107</a>."},"intvolume":"       107","type":"journal_article","day":"26","status":"public","doi":"10.1073/pnas.1009695107","main_file_link":[{"url":"https://doi.org/10.1073/pnas.1009695107","open_access":"1"}],"date_created":"2021-06-07T09:31:01Z","publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"scopus_import":"1","issue":"43","title":"Local DNA hypomethylation activates genes in rice endosperm"},{"oa_version":"Published Version","_id":"9489","oa":1,"page":"R780-R785","article_type":"review","abstract":[{"lang":"eng","text":"Cytosine methylation is an ancient process with conserved enzymology but diverse biological functions that include defense against transposable elements and regulation of gene expression. Here we will discuss the evolution and biological significance of eukaryotic DNA methylation, the likely drivers of that evolution, and major remaining mysteries."}],"extern":"1","author":[{"full_name":"Zemach, Assaf","last_name":"Zemach","first_name":"Assaf"},{"last_name":"Zilberman","first_name":"Daniel","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","orcid":"0000-0002-0123-8649","full_name":"Zilberman, Daniel"}],"external_id":{"pmid":["20833323"]},"department":[{"_id":"DaZi"}],"date_updated":"2021-12-14T08:52:34Z","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publication_status":"published","volume":20,"year":"2010","intvolume":"        20","date_published":"2010-09-14T00:00:00Z","citation":{"ama":"Zemach A, Zilberman D. Evolution of eukaryotic DNA methylation and the pursuit of safer sex. <i>Current Biology</i>. 2010;20(17):R780-R785. doi:<a href=\"https://doi.org/10.1016/j.cub.2010.07.007\">10.1016/j.cub.2010.07.007</a>","chicago":"Zemach, Assaf, and Daniel Zilberman. “Evolution of Eukaryotic DNA Methylation and the Pursuit of Safer Sex.” <i>Current Biology</i>. Elsevier, 2010. <a href=\"https://doi.org/10.1016/j.cub.2010.07.007\">https://doi.org/10.1016/j.cub.2010.07.007</a>.","ieee":"A. Zemach and D. Zilberman, “Evolution of eukaryotic DNA methylation and the pursuit of safer sex,” <i>Current Biology</i>, vol. 20, no. 17. Elsevier, pp. R780–R785, 2010.","mla":"Zemach, Assaf, and Daniel Zilberman. “Evolution of Eukaryotic DNA Methylation and the Pursuit of Safer Sex.” <i>Current Biology</i>, vol. 20, no. 17, Elsevier, 2010, pp. R780–85, doi:<a href=\"https://doi.org/10.1016/j.cub.2010.07.007\">10.1016/j.cub.2010.07.007</a>.","ista":"Zemach A, Zilberman D. 2010. Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Current Biology. 20(17), R780–R785.","apa":"Zemach, A., &#38; Zilberman, D. (2010). Evolution of eukaryotic DNA methylation and the pursuit of safer sex. <i>Current Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.cub.2010.07.007\">https://doi.org/10.1016/j.cub.2010.07.007</a>","short":"A. Zemach, D. Zilberman, Current Biology 20 (2010) R780–R785."},"article_processing_charge":"No","quality_controlled":"1","publication":"Current Biology","pmid":1,"month":"09","language":[{"iso":"eng"}],"publisher":"Elsevier","issue":"17","title":"Evolution of eukaryotic DNA methylation and the pursuit of safer sex","publication_identifier":{"eissn":["1879-0445"],"issn":["0960-9822"]},"scopus_import":"1","doi":"10.1016/j.cub.2010.07.007","date_created":"2021-06-07T09:45:27Z","main_file_link":[{"url":"https://doi.org/10.1016/j.cub.2010.07.007","open_access":"1"}],"status":"public","type":"journal_article","day":"14"},{"month":"07","department":[{"_id":"NiBa"}],"publisher":"Public Library of Science","article_processing_charge":"No","author":[{"first_name":"Ulises","last_name":"Rosas","full_name":"Rosas, Ulises"},{"first_name":"Nicholas H","last_name":"Barton","full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Copsey, Lucy","last_name":"Copsey","first_name":"Lucy"},{"full_name":"Barbier De Reuille, Pierre","first_name":"Pierre","last_name":"Barbier De Reuille"},{"last_name":"Coen","first_name":"Enrico","full_name":"Coen, Enrico"}],"date_published":"2010-07-20T00:00:00Z","citation":{"mla":"Rosas, Ulises, et al. <i>Heterosis and the Drift Load</i>. Public Library of Science, 2010, doi:<a href=\"https://doi.org/10.1371/journal.pbio.1000429.s003\">10.1371/journal.pbio.1000429.s003</a>.","ieee":"U. Rosas, N. H. Barton, L. Copsey, P. Barbier De Reuille, and E. Coen, “Heterosis and the drift load.” Public Library of Science, 2010.","chicago":"Rosas, Ulises, Nicholas H Barton, Lucy Copsey, Pierre Barbier De Reuille, and Enrico Coen. “Heterosis and the Drift Load.” Public Library of Science, 2010. <a href=\"https://doi.org/10.1371/journal.pbio.1000429.s003\">https://doi.org/10.1371/journal.pbio.1000429.s003</a>.","ama":"Rosas U, Barton NH, Copsey L, Barbier De Reuille P, Coen E. Heterosis and the drift load. 2010. doi:<a href=\"https://doi.org/10.1371/journal.pbio.1000429.s003\">10.1371/journal.pbio.1000429.s003</a>","short":"U. Rosas, N.H. Barton, L. Copsey, P. Barbier De Reuille, E. Coen, (2010).","apa":"Rosas, U., Barton, N. H., Copsey, L., Barbier De Reuille, P., &#38; Coen, E. (2010). Heterosis and the drift load. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pbio.1000429.s003\">https://doi.org/10.1371/journal.pbio.1000429.s003</a>","ista":"Rosas U, Barton NH, Copsey L, Barbier De Reuille P, Coen E. 2010. Heterosis and the drift load, Public Library of Science, <a href=\"https://doi.org/10.1371/journal.pbio.1000429.s003\">10.1371/journal.pbio.1000429.s003</a>."},"oa_version":"Published Version","_id":"9764","type":"research_data_reference","day":"20","year":"2010","doi":"10.1371/journal.pbio.1000429.s003","date_created":"2021-08-02T09:45:39Z","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","status":"public","related_material":{"record":[{"id":"3779","status":"public","relation":"used_in_publication"}]},"title":"Heterosis and the drift load","date_updated":"2025-09-30T09:42:52Z"}]