[{"doi":"10.1038/nsmb.2037","day":"01","author":[{"orcid":"0000-0001-7309-9724","first_name":"Martin","last_name":"Loose","full_name":"Martin Loose","id":"462D4284-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Fischer-Friedrich, Elisabeth","last_name":"Fischer Friedrich","first_name":"Elisabeth"},{"last_name":"Herold","full_name":"Herold, Christoph","first_name":"Christoph"},{"last_name":"Kruse","full_name":"Kruse, Karsten","first_name":"Karsten"},{"last_name":"Schwille","full_name":"Schwille, Petra ","first_name":"Petra"}],"title":"Min protein patterns emerge from rapid rebinding and membrane interaction of MinE","intvolume":"        18","date_updated":"2021-01-12T06:54:31Z","publication_status":"published","volume":18,"extern":1,"date_published":"2011-05-01T00:00:00Z","_id":"1985","month":"05","abstract":[{"lang":"eng","text":"\n\nIn Escherichia coli, the pole-to-pole oscillation of the Min proteins directs septum formation to midcell, which is required for symmetric cell division. In vitro, protein waves emerge from the self-organization of MinD, a membrane-binding ATPase, and its activator MinE. For wave propagation, the proteins need to cycle through states of collective membrane binding and unbinding. Although MinD presumably undergoes cooperative membrane attachment, it is unclear how synchronous detachment is coordinated. We used confocal and single-molecule microscopy to elucidate the order of events during Min wave propagation. We propose that protein detachment at the rear of the wave, and the formation of the E-ring, are accomplished by two complementary processes: first, local accumulation of MinE due to rapid rebinding, leading to dynamic instability; and second, a structural change induced by membrane-interaction of MinE in an equimolar MinD-MinE (MinDE) complex, which supports the robustness of pattern formation."}],"publisher":"Nature Publishing Group","publist_id":"5098","date_created":"2018-12-11T11:55:03Z","year":"2011","citation":{"ista":"Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. 2011. Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. Nature Structural and Molecular Biology. 18(5), 577–583.","mla":"Loose, Martin, et al. “Min Protein Patterns Emerge from Rapid Rebinding and Membrane Interaction of MinE.” <i>Nature Structural and Molecular Biology</i>, vol. 18, no. 5, Nature Publishing Group, 2011, pp. 577–83, doi:<a href=\"https://doi.org/10.1038/nsmb.2037\">10.1038/nsmb.2037</a>.","apa":"Loose, M., Fischer Friedrich, E., Herold, C., Kruse, K., &#38; Schwille, P. (2011). Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. <i>Nature Structural and Molecular Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nsmb.2037\">https://doi.org/10.1038/nsmb.2037</a>","short":"M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, P. Schwille, Nature Structural and Molecular Biology 18 (2011) 577–583.","ama":"Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. <i>Nature Structural and Molecular Biology</i>. 2011;18(5):577-583. doi:<a href=\"https://doi.org/10.1038/nsmb.2037\">10.1038/nsmb.2037</a>","chicago":"Loose, Martin, Elisabeth Fischer Friedrich, Christoph Herold, Karsten Kruse, and Petra Schwille. “Min Protein Patterns Emerge from Rapid Rebinding and Membrane Interaction of MinE.” <i>Nature Structural and Molecular Biology</i>. Nature Publishing Group, 2011. <a href=\"https://doi.org/10.1038/nsmb.2037\">https://doi.org/10.1038/nsmb.2037</a>.","ieee":"M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, and P. Schwille, “Min protein patterns emerge from rapid rebinding and membrane interaction of MinE,” <i>Nature Structural and Molecular Biology</i>, vol. 18, no. 5. Nature Publishing Group, pp. 577–583, 2011."},"quality_controlled":0,"issue":"5","acknowledgement":"This work was also supported by the Max Planck Society (M.L., E.F.-F., P.S.).","page":"577 - 583","publication":"Nature Structural and Molecular Biology","type":"journal_article","status":"public"},{"publisher":"Annual Reviews","publist_id":"5097","abstract":[{"lang":"eng","text":"One of the most fundamental features of biological systems is probably their ability to self-organize in space and time on different scales. Despite many elaborate theoretical models of how molecular self-organization can come about, only a few experimental systems of biological origin have so far been rigorously described, due mostly to their inherent complexity. The most promising strategy of modern biophysics is thus to identify minimal biological systems showing self-organized emergent behavior. One of the best-understood examples of protein self-organization, which has recently been successfully reconstituted in vitro, is represented by the oscillations of the Min proteins in Escherichia coli. In this review, we summarize the current understanding of the mechanism of Min protein self-organization in vivo and in vitro. We discuss the potential of the Min oscillations to sense the geometry of the cell and suggest that spontaneous protein waves could be a general means of intracellular organization. We hypothesize that cooperative membrane binding and unbinding, e.g., as an energy-dependent switch, may act as an important regulatory mechanism for protein oscillations and pattern formation in the cell."}],"date_created":"2018-12-11T11:55:04Z","year":"2011","quality_controlled":0,"issue":"1","citation":{"chicago":"Loose, Martin, Karsten Kruse, and Petra Schwille. “Protein Self-Organization: Lessons from the Min System.” <i>Annual Review of Biophysics</i>. Annual Reviews, 2011. <a href=\"https://doi.org/10.1146/annurev-biophys-042910-155332\">https://doi.org/10.1146/annurev-biophys-042910-155332</a>.","ieee":"M. Loose, K. Kruse, and P. Schwille, “Protein self-organization: Lessons from the min system,” <i>Annual Review of Biophysics</i>, vol. 40, no. 1. Annual Reviews, pp. 315–336, 2011.","ista":"Loose M, Kruse K, Schwille P. 2011. Protein self-organization: Lessons from the min system. Annual Review of Biophysics. 40(1), 315–336.","short":"M. Loose, K. Kruse, P. Schwille, Annual Review of Biophysics 40 (2011) 315–336.","mla":"Loose, Martin, et al. “Protein Self-Organization: Lessons from the Min System.” <i>Annual Review of Biophysics</i>, vol. 40, no. 1, Annual Reviews, 2011, pp. 315–36, doi:<a href=\"https://doi.org/10.1146/annurev-biophys-042910-155332\">10.1146/annurev-biophys-042910-155332</a>.","apa":"Loose, M., Kruse, K., &#38; Schwille, P. (2011). Protein self-organization: Lessons from the min system. <i>Annual Review of Biophysics</i>. Annual Reviews. <a href=\"https://doi.org/10.1146/annurev-biophys-042910-155332\">https://doi.org/10.1146/annurev-biophys-042910-155332</a>","ama":"Loose M, Kruse K, Schwille P. Protein self-organization: Lessons from the min system. <i>Annual Review of Biophysics</i>. 2011;40(1):315-336. doi:<a href=\"https://doi.org/10.1146/annurev-biophys-042910-155332\">10.1146/annurev-biophys-042910-155332</a>"},"page":"315 - 336","publication":"Annual Review of Biophysics","status":"public","type":"journal_article","date_published":"2011-06-09T00:00:00Z","_id":"1986","month":"06","title":"Protein self-organization: Lessons from the min system","date_updated":"2021-01-12T06:54:31Z","intvolume":"        40","volume":40,"publication_status":"published","extern":1,"doi":"10.1146/annurev-biophys-042910-155332","day":"09","author":[{"id":"462D4284-F248-11E8-B48F-1D18A9856A87","full_name":"Martin Loose","last_name":"Loose","first_name":"Martin","orcid":"0000-0001-7309-9724"},{"first_name":"Karsten","full_name":"Kruse, Karsten","last_name":"Kruse"},{"first_name":"Petra","last_name":"Schwille","full_name":"Schwille, Petra "}]},{"abstract":[{"text":"Many species have morphologically and genetically differentiated sex chromosomes, such as the XY pair of mammals. Y chromosomes are often highly degenerated and carry few functional genes, so that XY males have only one copy of most Xlinked genes (whereas females have two). As a result, chromosome-wide mechanisms of dosage compensation, such as the mammalian X-inactivation, often evolve to reestablish expression balance. A similar phenomenon is expected in femaleheterogametic species, where ZW females should suffer from imbalances due to W-chromosome degeneration. However, no global dosage compensation mechanisms have been detected in the two independent ZW systems that have been studied systematically (birds and silkworm), leading to the suggestion that lack of global dosage compensation may be a general feature of female-heterogametic species. However, analyses of other independently evolved ZW systems are required to test if this is the case. In this study, we use published genomic and expression data to test for the presence of global dosage compensation in Schistosoma mansoni, a trematode parasite that causes schistosomiasis in humans. We find that Z-linked expression is reduced relative to autosomal expression in females but not males, consistent with incomplete or localized dosage compensation. This gives further support to the theory that female-heterogametic species may not require global mechanisms of dosage compensation.","lang":"eng"}],"publist_id":"4966","date_created":"2018-12-11T11:55:33Z","citation":{"ista":"Vicoso B, Bachtrog D. 2011. Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biology and Evolution. 3(1), 230–235.","ama":"Vicoso B, Bachtrog D. Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. <i>Genome Biology and Evolution</i>. 2011;3(1):230-235. doi:<a href=\"https://doi.org/10.1093/gbe/evr010\">10.1093/gbe/evr010</a>","short":"B. Vicoso, D. Bachtrog, Genome Biology and Evolution 3 (2011) 230–235.","apa":"Vicoso, B., &#38; Bachtrog, D. (2011). Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. <i>Genome Biology and Evolution</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/gbe/evr010\">https://doi.org/10.1093/gbe/evr010</a>","mla":"Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in Schistosoma Mansoni, a Female-Heterogametic Parasite.” <i>Genome Biology and Evolution</i>, vol. 3, no. 1, Oxford University Press, 2011, pp. 230–35, doi:<a href=\"https://doi.org/10.1093/gbe/evr010\">10.1093/gbe/evr010</a>.","chicago":"Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in Schistosoma Mansoni, a Female-Heterogametic Parasite.” <i>Genome Biology and Evolution</i>. Oxford University Press, 2011. <a href=\"https://doi.org/10.1093/gbe/evr010\">https://doi.org/10.1093/gbe/evr010</a>.","ieee":"B. Vicoso and D. Bachtrog, “Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite,” <i>Genome Biology and Evolution</i>, vol. 3, no. 1. Oxford University Press, pp. 230–235, 2011."},"quality_controlled":"1","year":"2011","page":"230 - 235","type":"journal_article","publication":"Genome Biology and Evolution","month":"02","intvolume":"         3","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","short":"CC BY-NC (4.0)"},"publisher":"Oxford University Press","oa":1,"issue":"1","file":[{"file_size":212547,"date_updated":"2020-07-14T12:45:27Z","date_created":"2019-05-10T07:41:28Z","relation":"main_file","file_name":"2011_GBE_Vicoso.pdf","file_id":"6395","checksum":"7855c134436e4f6a13d63b6606d7e8dd","content_type":"application/pdf","access_level":"open_access","creator":"dernst"}],"status":"public","date_published":"2011-02-11T00:00:00Z","_id":"2072","license":"https://creativecommons.org/licenses/by-nc/4.0/","title":"Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite","date_updated":"2021-01-12T06:55:08Z","oa_version":"Published Version","volume":3,"file_date_updated":"2020-07-14T12:45:27Z","extern":"1","language":[{"iso":"eng"}],"has_accepted_license":"1","doi":"10.1093/gbe/evr010","day":"11","ddc":["570"],"author":[{"first_name":"Beatriz","orcid":"0000-0002-4579-8306","full_name":"Vicoso, Beatriz","last_name":"Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Bachtrog, Doris","last_name":"Bachtrog","first_name":"Doris"}]},{"date_updated":"2021-11-29T15:12:10Z","title":"Soft elastic surfaces as a platform for particle self-assembly","volume":7,"oa_version":"Preprint","article_number":"8324","article_type":"original","extern":"1","language":[{"iso":"eng"}],"doi":"10.1039/c1sm05773a","scopus_import":"1","author":[{"last_name":"Šarić","full_name":"Šarić, Anđela","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","orcid":"0000-0002-7854-2139","first_name":"Anđela"},{"last_name":"Cacciuto","full_name":"Cacciuto, Angelo","first_name":"Angelo"}],"day":"08","publisher":"Royal Society of Chemistry","acknowledgement":"This work was supported by the National Science Foundation under Career Grant No. DMR-0846426. We thank Josep C. Pàmies and William L. Miller for helpful discussions.","article_processing_charge":"No","oa":1,"issue":"18","external_id":{"arxiv":["1106.2995"]},"status":"public","date_published":"2011-08-08T00:00:00Z","_id":"10389","arxiv":1,"intvolume":"         7","publication_identifier":{"eissn":["1744-6848"],"issn":["1744-683X"]},"publication_status":"published","keyword":["condensed matter physics","general chemistry"],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_created":"2021-11-29T14:33:18Z","abstract":[{"lang":"eng","text":"We perform numerical simulations to study self-assembly of nanoparticles mediated by an elastic planar surface. We show how the nontrivial elastic response to deformations of these surfaces leads to anisotropic interactions between the particles resulting in aggregates having different geometrical features. The morphology of the patterns can be controlled by the mechanical properties of the surface and the strength of the particle adhesion. We use simple scaling arguments to understand the formation of the different structures, and we show how the adhering particles can cause the underlying elastic substrate to wrinkle if two of its opposite edges are clamped. Finally, we discuss the implications of our results and suggest how elastic surfaces could be used in nanofabrication."}],"year":"2011","quality_controlled":"1","citation":{"ista":"Šarić A, Cacciuto A. 2011. Soft elastic surfaces as a platform for particle self-assembly. Soft Matter. 7(18), 8324.","mla":"Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform for Particle Self-Assembly.” <i>Soft Matter</i>, vol. 7, no. 18, 8324, Royal Society of Chemistry, 2011, doi:<a href=\"https://doi.org/10.1039/c1sm05773a\">10.1039/c1sm05773a</a>.","apa":"Šarić, A., &#38; Cacciuto, A. (2011). Soft elastic surfaces as a platform for particle self-assembly. <i>Soft Matter</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/c1sm05773a\">https://doi.org/10.1039/c1sm05773a</a>","short":"A. Šarić, A. Cacciuto, Soft Matter 7 (2011).","ama":"Šarić A, Cacciuto A. Soft elastic surfaces as a platform for particle self-assembly. <i>Soft Matter</i>. 2011;7(18). doi:<a href=\"https://doi.org/10.1039/c1sm05773a\">10.1039/c1sm05773a</a>","chicago":"Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform for Particle Self-Assembly.” <i>Soft Matter</i>. Royal Society of Chemistry, 2011. <a href=\"https://doi.org/10.1039/c1sm05773a\">https://doi.org/10.1039/c1sm05773a</a>.","ieee":"A. Šarić and A. Cacciuto, “Soft elastic surfaces as a platform for particle self-assembly,” <i>Soft Matter</i>, vol. 7, no. 18. Royal Society of Chemistry, 2011."},"main_file_link":[{"url":"https://arxiv.org/abs/1106.2995","open_access":"1"}],"type":"journal_article","publication":"Soft Matter","month":"08"},{"citation":{"ieee":"H. Nägerl, M. Mark, E. Haller, M. Gustavsson, R. Hart, and J. G. Danzl, “Ultracold and dense samples of ground-state molecules in lattice potentials,” <i>Journal of Physics: Conference Series</i>, vol. 264, no. 1. IOP Publishing Ltd., 2011.","chicago":"Nägerl, Hanns, Manfred Mark, Elmar Haller, Mattias Gustavsson, Russell Hart, and Johann G Danzl. “Ultracold and Dense Samples of Ground-State Molecules in Lattice Potentials.” <i>Journal of Physics: Conference Series</i>. IOP Publishing Ltd., 2011. <a href=\"https://doi.org/10.1088/1742-6596/264/1/012015\">https://doi.org/10.1088/1742-6596/264/1/012015</a>.","apa":"Nägerl, H., Mark, M., Haller, E., Gustavsson, M., Hart, R., &#38; Danzl, J. G. (2011). Ultracold and dense samples of ground-state molecules in lattice potentials. <i>Journal of Physics: Conference Series</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/1742-6596/264/1/012015\">https://doi.org/10.1088/1742-6596/264/1/012015</a>","short":"H. Nägerl, M. Mark, E. Haller, M. Gustavsson, R. Hart, J.G. Danzl, Journal of Physics: Conference Series 264 (2011).","mla":"Nägerl, Hanns, et al. “Ultracold and Dense Samples of Ground-State Molecules in Lattice Potentials.” <i>Journal of Physics: Conference Series</i>, vol. 264, no. 1, IOP Publishing Ltd., 2011, doi:<a href=\"https://doi.org/10.1088/1742-6596/264/1/012015\">10.1088/1742-6596/264/1/012015</a>.","ama":"Nägerl H, Mark M, Haller E, Gustavsson M, Hart R, Danzl JG. Ultracold and dense samples of ground-state molecules in lattice potentials. <i>Journal of Physics: Conference Series</i>. 2011;264(1). doi:<a href=\"https://doi.org/10.1088/1742-6596/264/1/012015\">10.1088/1742-6596/264/1/012015</a>","ista":"Nägerl H, Mark M, Haller E, Gustavsson M, Hart R, Danzl JG. 2011. Ultracold and dense samples of ground-state molecules in lattice potentials. Journal of Physics: Conference Series. 264(1)."},"year":"2011","abstract":[{"lang":"eng","text":"We produce an ultracold and dense sample of rovibronic ground state Cs 2 molecules close to the regime of quantum degeneracy, in a single hyperfine level, in the presence of an optical lattice. The molecules are individually trapped, in the motional ground state of an optical lattice well, with a lifetime of 8 s. For preparation, we start with a zero-temperature atomic Mott-insulator state with optimized double-site occupancy and efficiently associate weakly-bound dimer molecules on a Feshbach resonance. Despite extremely weak Franck-Condon wavefunction overlap, the molecules are subsequently transferred with &gt;50% efficiency to the rovibronic ground state by a stimulated four-photon process. Our results present a crucial step towards the generation of Bose-Einstein condensates of ground-state molecules and, when suitably generalized to polar heteronuclear molecules such as RbCs, the realization of dipolar many-body quantum-gas phases in periodic potentials."}],"publist_id":"6340","date_created":"2018-12-11T11:49:52Z","publication":"Journal of Physics: Conference Series","type":"journal_article","main_file_link":[{"url":"https://arxiv.org/abs/1011.0179","open_access":"1"}],"month":"01","intvolume":"       264","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"1","oa":1,"acknowledgement":"We thank H. Ritsch, N. Bouloufa, O. Dulieu, J. Aldegunde, J. M. Hutson, H. Salami, T. Bergeman,  S. D ̈urr, and K. Bergmann for valuable discussions and H. Telle, H. Schnatz, B. Lipphardt, and J. Alnis for sharing technical expertise. We are indebted to R. Grimm for generous support. We gratefully acknowledge funding by the Austrian Ministry of Science and\r\nResearch (Bundesministerium f ̈ur Wissenschaft und Forschung) and the Austrian Science Fund\r\n(Fonds zur F ̈orderung der wissenschaftlichen Forschung) in the form of a START prize grant\r\nand by the European Science Foundation within the framework of the EuroQUASAR collective\r\nresearch project QuDeGPM (Project I 153-N16) and within the framework of the EuroQUAM\r\ncollective research project QuDipMol (Project I 124-N16).  R.H. was supported by a Marie Curie\r\nInternational Incoming Fellowship within the 7th European Community Framework Programme","article_processing_charge":"No","publisher":"IOP Publishing Ltd.","external_id":{"arxiv":["1011.0179"]},"status":"public","_id":"1048","date_published":"2011-01-01T00:00:00Z","arxiv":1,"date_updated":"2021-01-12T06:47:54Z","title":"Ultracold and dense samples of ground-state molecules in lattice potentials","extern":"1","oa_version":"Preprint","volume":264,"language":[{"iso":"eng"}],"day":"01","author":[{"first_name":"Hanns","last_name":"Nägerl","full_name":"Nägerl, Hanns"},{"first_name":"Manfred","full_name":"Mark, Manfred","last_name":"Mark"},{"full_name":"Haller, Elmar","last_name":"Haller","first_name":"Elmar"},{"first_name":"Mattias","full_name":"Gustavsson, Mattias","last_name":"Gustavsson"},{"full_name":"Hart, Russell","last_name":"Hart","first_name":"Russell"},{"first_name":"Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","last_name":"Danzl","full_name":"Danzl, Johann G"}],"doi":"10.1088/1742-6596/264/1/012015"},{"intvolume":"        83","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2011","citation":{"chicago":"Bai, Jianmei, Ergin Ahmed, Bediha Beser, Yafei Guan, Svetlana Kotochigova, Marjatta Lyyra, Seth Ashman, et al. “Global Analysis of Data on the Spin-Orbit-Coupled A 1Σu+ and b 3Πu Inf States of Cs2.” <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevA.83.032514\">https://doi.org/10.1103/PhysRevA.83.032514</a>.","ieee":"J. Bai <i>et al.</i>, “Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2,” <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 83, no. 3. American Physical Society, 2011.","ista":"Bai J, Ahmed E, Beser B, Guan Y, Kotochigova S, Lyyra M, Ashman S, Wolfe C, Huennekens J, Xie F, Li D, Li L, Tamanis M, Ferber R, Drozdova A, Pazyuk E, Stolyarov A, Danzl JG, Nägerl H, Bouloufa N, Dulieu O, Amiot C, Salami H, Bergeman T. 2011. Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2.  Physical Review A - Atomic, Molecular, and Optical Physics. 83(3).","mla":"Bai, Jianmei, et al. “Global Analysis of Data on the Spin-Orbit-Coupled A 1Σu+ and b 3Πu Inf States of Cs2.” <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 83, no. 3, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevA.83.032514\">10.1103/PhysRevA.83.032514</a>.","short":"J. Bai, E. Ahmed, B. Beser, Y. Guan, S. Kotochigova, M. Lyyra, S. Ashman, C. Wolfe, J. Huennekens, F. Xie, D. Li, L. Li, M. Tamanis, R. Ferber, A. Drozdova, E. Pazyuk, A. Stolyarov, J.G. Danzl, H. Nägerl, N. Bouloufa, O. Dulieu, C. Amiot, H. Salami, T. Bergeman,  Physical Review A - Atomic, Molecular, and Optical Physics 83 (2011).","apa":"Bai, J., Ahmed, E., Beser, B., Guan, Y., Kotochigova, S., Lyyra, M., … Bergeman, T. (2011). Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2. <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.83.032514\">https://doi.org/10.1103/PhysRevA.83.032514</a>","ama":"Bai J, Ahmed E, Beser B, et al. Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2. <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2011;83(3). doi:<a href=\"https://doi.org/10.1103/PhysRevA.83.032514\">10.1103/PhysRevA.83.032514</a>"},"abstract":[{"lang":"eng","text":"We present experimentally derived potential curves 1?and spin-orbit interaction functions for the strongly perturbed AΣu+ 3?and bΠu states of the cesium dimer. The results are based on data from several sources. Laser-induced fluorescence Fourier transform spectroscopy (LIF FTS) was used some time ago in the Laboratoire Aimé Cotton primarily to study the XΣg+ state. More recent work at Tsinghua University provides information from moderate 3?resolution spectroscopy on the lowest levels of the bΠ0u± state as well as additional high-resolution data. From Innsbruck University, we have precision data obtained with cold Cs2 molecules. Recent data from Temple University was obtained using the optical-optical double resonance polarization spectroscopy technique, and finally, a group at the University of Latvia has added additional LIF FTS data. In the Hamiltonian matrix, we have used analytic potentials (the expanded Morse oscillator form) with both finite-difference (FD) coupled-channel and discrete variable representation (DVR) calculations of the term values. Fitted diagonal and off-diagonal spin-orbit functions are obtained and compared with ab initio results from Temple and Moscow State universities."}],"publist_id":"6339","date_created":"2018-12-11T11:49:53Z","type":"journal_article","publication":" Physical Review A - Atomic, Molecular, and Optical Physics","main_file_link":[{"url":"https://arxiv.org/abs/1101.5412","open_access":"1"}],"month":"03","title":"Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2","date_updated":"2021-01-12T06:47:55Z","extern":"1","volume":83,"oa_version":"Preprint","language":[{"iso":"eng"}],"day":"28","author":[{"first_name":"Jianmei","full_name":"Bai, Jianmei","last_name":"Bai"},{"full_name":"Ahmed, Ergin","last_name":"Ahmed","first_name":"Ergin"},{"last_name":"Beser","full_name":"Beser, Bediha","first_name":"Bediha"},{"full_name":"Guan, Yafei","last_name":"Guan","first_name":"Yafei"},{"first_name":"Svetlana","last_name":"Kotochigova","full_name":"Kotochigova, Svetlana"},{"first_name":"Marjatta","full_name":"Lyyra, Marjatta","last_name":"Lyyra"},{"last_name":"Ashman","full_name":"Ashman, Seth","first_name":"Seth"},{"full_name":"Wolfe, Christopher","last_name":"Wolfe","first_name":"Christopher"},{"first_name":"John","last_name":"Huennekens","full_name":"Huennekens, John"},{"full_name":"Xie, Feng","last_name":"Xie","first_name":"Feng"},{"first_name":"Dan","last_name":"Li","full_name":"Li, Dan"},{"first_name":"Li","last_name":"Li","full_name":"Li, Li"},{"first_name":"Maris","full_name":"Tamanis, Maris","last_name":"Tamanis"},{"last_name":"Ferber","full_name":"Ferber, Ruvin","first_name":"Ruvin"},{"last_name":"Drozdova","full_name":"Drozdova, Anastasia","first_name":"Anastasia"},{"first_name":"Elena","last_name":"Pazyuk","full_name":"Pazyuk, Elena"},{"last_name":"Stolyarov","full_name":"Stolyarov, Andrey","first_name":"Andrey"},{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","last_name":"Danzl","full_name":"Danzl, Johann G","first_name":"Johann G","orcid":"0000-0001-8559-3973"},{"last_name":"Nägerl","full_name":"Nägerl, Hanns","first_name":"Hanns"},{"first_name":"Nadia","full_name":"Bouloufa, Nadia","last_name":"Bouloufa"},{"last_name":"Dulieu","full_name":"Dulieu, Olivier","first_name":"Olivier"},{"first_name":"Claude","last_name":"Amiot","full_name":"Amiot, Claude"},{"first_name":"Houssam","full_name":"Salami, Houssam","last_name":"Salami"},{"first_name":"Thomas","last_name":"Bergeman","full_name":"Bergeman, Thomas"}],"doi":"10.1103/PhysRevA.83.032514","oa":1,"issue":"3","acknowledgement":"The work in Temple University was supported by NSF grant no. PHY-0855502. S.K. acknowledges support from AFOSR and from NSF grant no. PHY-1005453. S.A., C.M., and J.H. were supported by NSF grants no. PHY-0652938 and PHY-0968898. The work at Stony Brook was supported by NSF grants no. PHY-0652459 and PHY-0968905. The work in Tsinghua University was supported by NSFC of China, under grant no. 20773072. The Moscow team thanks the Russian Foundation for Basic Researches by the grant no. 10-03-00195 and MSU Priority Direction 2.3. M.T. and R.F. are grateful to Ilze Klincare, Olga Nikolayeva, and Artis Kruzins for their help in spectra analysis, as well as appreciate the support from the ESF 2009/0223/1DP/1.1.1.2.0/09/APIA/VIAA/008 project.","article_processing_charge":"No","publisher":"American Physical Society","external_id":{"arxiv":["1101.5412"]},"status":"public","_id":"1050","date_published":"2011-03-28T00:00:00Z","arxiv":1},{"title":"Demonstration of the temporal matter-wave Talbot effect for trapped matter waves","intvolume":"        13","date_updated":"2021-01-12T06:47:56Z","volume":13,"publication_status":"published","oa_version":"None","extern":"1","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1088/1367-2630/13/8/085008","day":"01","author":[{"first_name":"Manfred","full_name":"Mark, Manfred","last_name":"Mark"},{"first_name":"Elmar","full_name":"Haller, Elmar","last_name":"Haller"},{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","last_name":"Danzl","full_name":"Danzl, Johann G","first_name":"Johann G","orcid":"0000-0001-8559-3973"},{"last_name":"Lauber","full_name":"Lauber, Katharina","first_name":"Katharina"},{"first_name":"Mattias","full_name":"Gustavsson, Mattias","last_name":"Gustavsson"},{"first_name":"Hanns","last_name":"Nägerl","full_name":"Nägerl, Hanns"}],"publisher":"IOP Publishing Ltd.","abstract":[{"text":"We demonstrate the temporal Talbot effect for trapped matter waves using ultracold atoms in an optical lattice. We investigate the phase evolution of an array of essentially non-interacting matter waves and observe matter-wave collapse and revival in the form of a Talbot interference pattern. By using long expansion times, we image momentum space with sub-recoil resolution, allowing us to observe fractional Talbot fringes up to tenth order.","lang":"eng"}],"publist_id":"6338","date_created":"2018-12-11T11:49:53Z","citation":{"ieee":"M. Mark, E. Haller, J. G. Danzl, K. Lauber, M. Gustavsson, and H. Nägerl, “Demonstration of the temporal matter-wave Talbot effect for trapped matter waves,” <i>New Journal of Physics</i>, vol. 13. IOP Publishing Ltd., 2011.","chicago":"Mark, Manfred, Elmar Haller, Johann G Danzl, Katharina Lauber, Mattias Gustavsson, and Hanns Nägerl. “Demonstration of the Temporal Matter-Wave Talbot Effect for Trapped Matter Waves.” <i>New Journal of Physics</i>. IOP Publishing Ltd., 2011. <a href=\"https://doi.org/10.1088/1367-2630/13/8/085008\">https://doi.org/10.1088/1367-2630/13/8/085008</a>.","apa":"Mark, M., Haller, E., Danzl, J. G., Lauber, K., Gustavsson, M., &#38; Nägerl, H. (2011). Demonstration of the temporal matter-wave Talbot effect for trapped matter waves. <i>New Journal of Physics</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/1367-2630/13/8/085008\">https://doi.org/10.1088/1367-2630/13/8/085008</a>","mla":"Mark, Manfred, et al. “Demonstration of the Temporal Matter-Wave Talbot Effect for Trapped Matter Waves.” <i>New Journal of Physics</i>, vol. 13, IOP Publishing Ltd., 2011, doi:<a href=\"https://doi.org/10.1088/1367-2630/13/8/085008\">10.1088/1367-2630/13/8/085008</a>.","short":"M. Mark, E. Haller, J.G. Danzl, K. Lauber, M. Gustavsson, H. Nägerl, New Journal of Physics 13 (2011).","ama":"Mark M, Haller E, Danzl JG, Lauber K, Gustavsson M, Nägerl H. Demonstration of the temporal matter-wave Talbot effect for trapped matter waves. <i>New Journal of Physics</i>. 2011;13. doi:<a href=\"https://doi.org/10.1088/1367-2630/13/8/085008\">10.1088/1367-2630/13/8/085008</a>","ista":"Mark M, Haller E, Danzl JG, Lauber K, Gustavsson M, Nägerl H. 2011. Demonstration of the temporal matter-wave Talbot effect for trapped matter waves. New Journal of Physics. 13."},"year":"2011","acknowledgement":"We are indebted to R Grimm for generous support and we thank A Daley for valuable discussions. We gratefully acknowledge funding by the Austrian Science Fund (FWF) within project I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR collective research project QuDeGPM.","article_processing_charge":"No","publication":"New Journal of Physics","status":"public","type":"journal_article","date_published":"2011-08-01T00:00:00Z","_id":"1051","month":"08"},{"intvolume":"        65","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"apa":"Vexiau, R., Bouloufa, N., Aymar, M., Danzl, J. G., Mark, M., Nägerl, H., &#38; Dulieu, O. (2011). Optimal trapping wavelengths of Cs 2 molecules in an optical lattice. <i>European Physical Journal D</i>. Springer. <a href=\"https://doi.org/10.1140/epjd/e2011-20085-4\">https://doi.org/10.1140/epjd/e2011-20085-4</a>","mla":"Vexiau, Romain, et al. “Optimal Trapping Wavelengths of Cs 2 Molecules in an Optical Lattice.” <i>European Physical Journal D</i>, vol. 65, no. 1–2, Springer, 2011, pp. 243–50, doi:<a href=\"https://doi.org/10.1140/epjd/e2011-20085-4\">10.1140/epjd/e2011-20085-4</a>.","short":"R. Vexiau, N. Bouloufa, M. Aymar, J.G. Danzl, M. Mark, H. Nägerl, O. Dulieu, European Physical Journal D 65 (2011) 243–250.","ama":"Vexiau R, Bouloufa N, Aymar M, et al. Optimal trapping wavelengths of Cs 2 molecules in an optical lattice. <i>European Physical Journal D</i>. 2011;65(1-2):243-250. doi:<a href=\"https://doi.org/10.1140/epjd/e2011-20085-4\">10.1140/epjd/e2011-20085-4</a>","ista":"Vexiau R, Bouloufa N, Aymar M, Danzl JG, Mark M, Nägerl H, Dulieu O. 2011. Optimal trapping wavelengths of Cs 2 molecules in an optical lattice. European Physical Journal D. 65(1–2), 243–250.","ieee":"R. Vexiau <i>et al.</i>, “Optimal trapping wavelengths of Cs 2 molecules in an optical lattice,” <i>European Physical Journal D</i>, vol. 65, no. 1–2. Springer, pp. 243–250, 2011.","chicago":"Vexiau, Romain, Nadia Bouloufa, Mireille Aymar, Johann G Danzl, Manfred Mark, Hanns Nägerl, and Olivier Dulieu. “Optimal Trapping Wavelengths of Cs 2 Molecules in an Optical Lattice.” <i>European Physical Journal D</i>. Springer, 2011. <a href=\"https://doi.org/10.1140/epjd/e2011-20085-4\">https://doi.org/10.1140/epjd/e2011-20085-4</a>."},"year":"2011","date_created":"2018-12-11T11:49:53Z","abstract":[{"lang":"eng","text":"The present paper aims at finding optimal parameters for trapping of Cs 2 molecules in optical lattices, with the perspective of creating a quantum degenerate gas of ground-state molecules. We have calculated dynamic polarizabilities of Cs 2 molecules subject to an oscillating electric field, using accurate potential curves and electronic transition dipole moments. We show that for some particular wavelengths of the optical lattice, called &quot;magic wavelengths&quot;, the polarizability of the ground-state molecules is equal to the one of a Feshbach molecule. As the creation of the sample of ground-state molecules relies on an adiabatic population transfer from weakly-bound molecules created on a Feshbach resonance, such a coincidence ensures that both the initial and final states are favorably trapped by the lattice light, allowing optimized transfer in agreement with the experimental observation."}],"publist_id":"6336","publication":"European Physical Journal D","type":"journal_article","page":"243 - 250","main_file_link":[{"url":"https://arxiv.org/abs/1102.1793","open_access":"1"}],"month":"11","date_updated":"2021-01-12T06:47:56Z","title":"Optimal trapping wavelengths of Cs 2 molecules in an optical lattice","extern":"1","volume":65,"oa_version":"Preprint","language":[{"iso":"eng"}],"author":[{"full_name":"Vexiau, Romain","last_name":"Vexiau","first_name":"Romain"},{"last_name":"Bouloufa","full_name":"Bouloufa, Nadia","first_name":"Nadia"},{"last_name":"Aymar","full_name":"Aymar, Mireille","first_name":"Mireille"},{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","last_name":"Danzl","first_name":"Johann G","orcid":"0000-0001-8559-3973"},{"full_name":"Mark, Manfred","last_name":"Mark","first_name":"Manfred"},{"last_name":"Nägerl","full_name":"Nägerl, Hanns","first_name":"Hanns"},{"first_name":"Olivier","last_name":"Dulieu","full_name":"Dulieu, Olivier"}],"day":"01","doi":"10.1140/epjd/e2011-20085-4","article_processing_charge":"No","acknowledgement":"We thank E. Haller for important contributions to the experimental work and R. Grimm for generous support. We acknowledge  funding  by  the  Austrian  Science  Fund  (FWF)  within\r\nproject Quantum Gases  of Ground-State Molecules,  project\r\nnumber P 21555-N20.","oa":1,"issue":"1-2","publisher":"Springer","external_id":{"arxiv":["1102.1793"]},"status":"public","_id":"1052","date_published":"2011-11-01T00:00:00Z","arxiv":1},{"month":"10","date_created":"2018-12-11T11:49:54Z","publist_id":"6337","abstract":[{"text":"We perform precision measurements on a Mott-insulator quantum state of ultracold atoms with tunable interactions. We probe the dependence of the superfluid-to-Mott-insulator transition on the interaction strength and explore the limits of the standard Bose-Hubbard model description. By tuning the on-site interaction energies to values comparable to the interband separation, we are able to quantitatively measure number-dependent shifts in the excitation spectrum caused by effective multibody interactions.","lang":"eng"}],"year":"2011","citation":{"ieee":"M. Mark, E. Haller, K. Lauber, J. G. Danzl, A. Daley, and H. Nägerl, “Precision measurements on a tunable Mott insulator of ultracold atoms,” <i>Physical Review Letters</i>, vol. 107, no. 17. American Physical Society, 2011.","chicago":"Mark, Manfred, Elmar Haller, Katharina Lauber, Johann G Danzl, Andrew Daley, and Hanns Nägerl. “Precision Measurements on a Tunable Mott Insulator of Ultracold Atoms.” <i>Physical Review Letters</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevLett.107.175301\">https://doi.org/10.1103/PhysRevLett.107.175301</a>.","ama":"Mark M, Haller E, Lauber K, Danzl JG, Daley A, Nägerl H. Precision measurements on a tunable Mott insulator of ultracold atoms. <i>Physical Review Letters</i>. 2011;107(17). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.107.175301\">10.1103/PhysRevLett.107.175301</a>","short":"M. Mark, E. Haller, K. Lauber, J.G. Danzl, A. Daley, H. Nägerl, Physical Review Letters 107 (2011).","apa":"Mark, M., Haller, E., Lauber, K., Danzl, J. G., Daley, A., &#38; Nägerl, H. (2011). Precision measurements on a tunable Mott insulator of ultracold atoms. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.107.175301\">https://doi.org/10.1103/PhysRevLett.107.175301</a>","mla":"Mark, Manfred, et al. “Precision Measurements on a Tunable Mott Insulator of Ultracold Atoms.” <i>Physical Review Letters</i>, vol. 107, no. 17, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.107.175301\">10.1103/PhysRevLett.107.175301</a>.","ista":"Mark M, Haller E, Lauber K, Danzl JG, Daley A, Nägerl H. 2011. Precision measurements on a tunable Mott insulator of ultracold atoms. Physical Review Letters. 107(17)."},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1107.1803"}],"type":"journal_article","publication":"Physical Review Letters","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"       107","publication_status":"published","date_published":"2011-10-18T00:00:00Z","_id":"1053","arxiv":1,"publisher":"American Physical Society","article_processing_charge":"No","acknowledgement":"We are indebted to R. Grimm for generous support. We thank D. Boyanovsky, H. Büchler, P. Johnson, W. Niedenzu, and E. Tiesinga for fruitful discussions. We gratefully acknowledge funding by the Austrian Science Fund (FWF) within project I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR collective research project QuDeGPM.","issue":"17","oa":1,"status":"public","external_id":{"arxiv":["1107.1803"]},"language":[{"iso":"eng"}],"doi":"10.1103/PhysRevLett.107.175301","author":[{"last_name":"Mark","full_name":"Mark, Manfred","first_name":"Manfred"},{"last_name":"Haller","full_name":"Haller, Elmar","first_name":"Elmar"},{"last_name":"Lauber","full_name":"Lauber, Katharina","first_name":"Katharina"},{"last_name":"Danzl","full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G","orcid":"0000-0001-8559-3973"},{"full_name":"Daley, Andrew","last_name":"Daley","first_name":"Andrew"},{"first_name":"Hanns","last_name":"Nägerl","full_name":"Nägerl, Hanns"}],"day":"18","date_updated":"2021-01-12T06:47:56Z","title":"Precision measurements on a tunable Mott insulator of ultracold atoms","oa_version":"Preprint","volume":107,"extern":"1"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","intvolume":"       107","month":"12","main_file_link":[{"url":"https://arxiv.org/abs/1107.4516","open_access":"1"}],"publication":"Physical Review Letters","type":"journal_article","date_created":"2018-12-11T11:49:54Z","publist_id":"6335","abstract":[{"text":"We investigate local three-body correlations for bosonic particles in three dimensions and one dimension as a function of the interaction strength. The three-body correlation function g(3) is determined by measuring the three-body recombination rate in an ultracold gas of Cs atoms. In three dimensions, we measure the dependence of g(3) on the gas parameter in a BEC, finding good agreement with the theoretical prediction accounting for beyond-mean-field effects. In one dimension, we observe a reduction of g( 3) by several orders of magnitude upon increasing interactions from the weakly interacting BEC to the strongly interacting Tonks-Girardeau regime, in good agreement with predictions from the Lieb-Liniger model for all strengths of interaction.","lang":"eng"}],"year":"2011","citation":{"apa":"Haller, E., Rabie, M., Mark, M., Danzl, J. G., Hart, R., Lauber, K., … Nägerl, H. (2011). Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.107.230404\">https://doi.org/10.1103/PhysRevLett.107.230404</a>","short":"E. Haller, M. Rabie, M. Mark, J.G. Danzl, R. Hart, K. Lauber, G. Pupillo, H. Nägerl, Physical Review Letters 107 (2011).","mla":"Haller, Elmar, et al. “Three-Body Correlation Functions and Recombination Rates for Bosons in Three Dimensions and One Dimension.” <i>Physical Review Letters</i>, vol. 107, no. 23, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.107.230404\">10.1103/PhysRevLett.107.230404</a>.","ama":"Haller E, Rabie M, Mark M, et al. Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension. <i>Physical Review Letters</i>. 2011;107(23). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.107.230404\">10.1103/PhysRevLett.107.230404</a>","ista":"Haller E, Rabie M, Mark M, Danzl JG, Hart R, Lauber K, Pupillo G, Nägerl H. 2011. Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension. Physical Review Letters. 107(23).","ieee":"E. Haller <i>et al.</i>, “Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension,” <i>Physical Review Letters</i>, vol. 107, no. 23. American Physical Society, 2011.","chicago":"Haller, Elmar, Mahmoud Rabie, Manfred Mark, Johann G Danzl, Russell Hart, Katharina Lauber, Guido Pupillo, and Hanns Nägerl. “Three-Body Correlation Functions and Recombination Rates for Bosons in Three Dimensions and One Dimension.” <i>Physical Review Letters</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevLett.107.230404\">https://doi.org/10.1103/PhysRevLett.107.230404</a>."},"doi":"10.1103/PhysRevLett.107.230404","author":[{"last_name":"Haller","full_name":"Haller, Elmar","first_name":"Elmar"},{"full_name":"Rabie, Mahmoud","last_name":"Rabie","first_name":"Mahmoud"},{"full_name":"Mark, Manfred","last_name":"Mark","first_name":"Manfred"},{"first_name":"Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","last_name":"Danzl"},{"first_name":"Russell","full_name":"Hart, Russell","last_name":"Hart"},{"first_name":"Katharina","full_name":"Lauber, Katharina","last_name":"Lauber"},{"first_name":"Guido","last_name":"Pupillo","full_name":"Pupillo, Guido"},{"first_name":"Hanns","last_name":"Nägerl","full_name":"Nägerl, Hanns"}],"day":"02","language":[{"iso":"eng"}],"oa_version":"Preprint","volume":107,"extern":"1","title":"Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension","date_updated":"2021-01-12T06:47:57Z","arxiv":1,"date_published":"2011-12-02T00:00:00Z","_id":"1054","external_id":{"arxiv":["1107.4516"]},"status":"public","publisher":"American Physical Society","acknowledgement":"We thank R. Grimm for generous support. We gratefully acknowledge funding by the Austrian Science Fund (FWF) within Project No. I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR collective research project QuDeGPM. G. P. acknowledges funding from the EU through NAME-QUAM and AQUTE.","article_processing_charge":"No","oa":1,"issue":"23"},{"publist_id":"6898","abstract":[{"text":"Synchronous distributed algorithms are easier to design and prove correct than algorithms that tolerate asynchrony. Yet, in the real world, networks experience asynchrony and other timing anomalies. In this paper, we address the question of how to efficiently transform an algorithm that relies on synchronization into an algorithm that tolerates asynchronous executions. We introduce a transformation technique from synchronous algorithms to indulgent algorithms [1], which induces only a constant overhead in terms of time complexity in well-behaved executions. Our technique is based on a new abstraction we call an asynchrony detector, which the participating processes implement collectively. The resulting transformation works for a large class of colorless tasks, including consensus and set agreement. Interestingly, we also show that our technique is relevant for colored tasks, by applying it to the renaming problem, to obtain the first indulgent renaming algorithm.","lang":"eng"}],"publisher":"Springer","date_created":"2018-12-11T11:48:20Z","year":"2011","citation":{"ieee":"D.-A. Alistarh, S. Gilbert, R. Guerraoui, and C. Travers, “Generating fast indulgent algorithms,” presented at the ICDCN: International Conference on Distributed Computing and Networking, 2011, vol. 6522 LNCS, pp. 41–52.","chicago":"Alistarh, Dan-Adrian, Seth Gilbert, Rachid Guerraoui, and Corentin Travers. “Generating Fast Indulgent Algorithms,” 6522 LNCS:41–52. Springer, 2011. <a href=\"https://doi.org/10.1007/978-3-642-17679-1_4\">https://doi.org/10.1007/978-3-642-17679-1_4</a>.","apa":"Alistarh, D.-A., Gilbert, S., Guerraoui, R., &#38; Travers, C. (2011). Generating fast indulgent algorithms (Vol. 6522 LNCS, pp. 41–52). Presented at the ICDCN: International Conference on Distributed Computing and Networking, Springer. <a href=\"https://doi.org/10.1007/978-3-642-17679-1_4\">https://doi.org/10.1007/978-3-642-17679-1_4</a>","mla":"Alistarh, Dan-Adrian, et al. <i>Generating Fast Indulgent Algorithms</i>. Vol. 6522 LNCS, Springer, 2011, pp. 41–52, doi:<a href=\"https://doi.org/10.1007/978-3-642-17679-1_4\">10.1007/978-3-642-17679-1_4</a>.","short":"D.-A. Alistarh, S. Gilbert, R. Guerraoui, C. Travers, in:, Springer, 2011, pp. 41–52.","ama":"Alistarh D-A, Gilbert S, Guerraoui R, Travers C. Generating fast indulgent algorithms. In: Vol 6522 LNCS. Springer; 2011:41-52. doi:<a href=\"https://doi.org/10.1007/978-3-642-17679-1_4\">10.1007/978-3-642-17679-1_4</a>","ista":"Alistarh D-A, Gilbert S, Guerraoui R, Travers C. 2011. Generating fast indulgent algorithms. ICDCN: International Conference on Distributed Computing and Networking, LNCS, vol. 6522 LNCS, 41–52."},"acknowledgement":"The authors would like to thank Prof. Hagit Attiya and Nikola\r\nKneˇ\r\nzevi ́\r\nc for their help on previous drafts of this paper, and the anonymous reviewers\r\nfor their useful feedback.","article_processing_charge":"No","page":"41 - 52","type":"conference","status":"public","conference":{"name":"ICDCN: International Conference on Distributed Computing and Networking"},"date_published":"2011-01-01T00:00:00Z","_id":"757","month":"01","date_updated":"2023-02-23T13:11:09Z","alternative_title":["LNCS"],"title":"Generating fast indulgent algorithms","volume":"6522 LNCS","oa_version":"None","publication_status":"published","extern":"1","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1007/978-3-642-17679-1_4","day":"01","author":[{"full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","first_name":"Dan-Adrian","orcid":"0000-0003-3650-940X"},{"first_name":"Seth","last_name":"Gilbert","full_name":"Gilbert, Seth"},{"last_name":"Guerraoui","full_name":"Guerraoui, Rachid","first_name":"Rachid"},{"first_name":"Corentin","last_name":"Travers","full_name":"Travers, Corentin"}]},{"page":"718 - 727","type":"conference","status":"public","abstract":[{"lang":"eng","text":"We study the complexity of renaming, a fundamental problem in distributed computing in which a set of processes need to pick distinct names from a given namespace. We prove an individual lower bound of Ω(k) process steps for deterministic renaming into any namespace of size sub-exponential in k, where k is the number of participants. This bound is tight: it draws an exponential separation between deterministic and randomized solutions, and implies new tight bounds for deterministic fetch-and-increment registers, queues and stacks. The proof of the bound is interesting in its own right, for it relies on the first reduction from renaming to another fundamental problem in distributed computing: mutual exclusion. We complement our individual bound with a global lower bound of Ω(k log (k/c)) on the total step complexity of renaming into a namespace of size ck, for any c ≥ 1. This applies to randomized algorithms against a strong adversary, and helps derive new global lower bounds for randomized approximate counter and fetch-and-increment implementations, all tight within logarithmic factors."}],"publisher":"IEEE","publist_id":"6895","date_created":"2018-12-11T11:48:21Z","citation":{"ista":"Alistarh D-A, Aspnes J, Gilbert S, Guerraoui R. 2011. The complexity of renaming. FOCS: Foundations of Computer Science, 718–727.","ama":"Alistarh D-A, Aspnes J, Gilbert S, Guerraoui R. The complexity of renaming. In: IEEE; 2011:718-727. doi:<a href=\"https://doi.org/10.1109/FOCS.2011.66\">10.1109/FOCS.2011.66</a>","short":"D.-A. Alistarh, J. Aspnes, S. Gilbert, R. Guerraoui, in:, IEEE, 2011, pp. 718–727.","mla":"Alistarh, Dan-Adrian, et al. <i>The Complexity of Renaming</i>. IEEE, 2011, pp. 718–27, doi:<a href=\"https://doi.org/10.1109/FOCS.2011.66\">10.1109/FOCS.2011.66</a>.","apa":"Alistarh, D.-A., Aspnes, J., Gilbert, S., &#38; Guerraoui, R. (2011). The complexity of renaming (pp. 718–727). Presented at the FOCS: Foundations of Computer Science, IEEE. <a href=\"https://doi.org/10.1109/FOCS.2011.66\">https://doi.org/10.1109/FOCS.2011.66</a>","chicago":"Alistarh, Dan-Adrian, James Aspnes, Seth Gilbert, and Rachid Guerraoui. “The Complexity of Renaming,” 718–27. IEEE, 2011. <a href=\"https://doi.org/10.1109/FOCS.2011.66\">https://doi.org/10.1109/FOCS.2011.66</a>.","ieee":"D.-A. Alistarh, J. Aspnes, S. Gilbert, and R. Guerraoui, “The complexity of renaming,” presented at the FOCS: Foundations of Computer Science, 2011, pp. 718–727."},"year":"2011","article_processing_charge":"No","acknowledgement":"The authors would like to thank Hagit Attiya and Keren\r\nCensor-Hillel  for  discussions  and  feedback  on  earlier  versions  of  this  paper,  and  the  anonymous  reviewers  for  their\r\nvery useful suggestions.","month":"01","date_published":"2011-01-01T00:00:00Z","conference":{"name":"FOCS: Foundations of Computer Science"},"_id":"759","oa_version":"None","publication_status":"published","extern":"1","date_updated":"2023-02-23T13:11:40Z","title":"The complexity of renaming","doi":"10.1109/FOCS.2011.66","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","author":[{"first_name":"Dan-Adrian","orcid":"0000-0003-3650-940X","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh"},{"first_name":"James","full_name":"Aspnes, James","last_name":"Aspnes"},{"first_name":"Seth","last_name":"Gilbert","full_name":"Gilbert, Seth"},{"first_name":"Rachid","full_name":"Guerraoui, Rachid","last_name":"Guerraoui"}],"language":[{"iso":"eng"}]},{"page":"97 - 109","status":"public","type":"conference","publisher":"Springer","abstract":[{"text":"A randomized implementation is given of a test-and-set register with O(log log n) individual step complexity and O(n) total step complexity against an oblivious adversary. The implementation is linearizable and multi-shot, and shows an exponential complexity improvement over previous solutions designed to work against a strong adversary.","lang":"eng"}],"publist_id":"6896","date_created":"2018-12-11T11:48:21Z","citation":{"ista":"Alistarh D-A, Aspnes J. 2011. Sub-logarithmic test-and-set against a weak adversary. DISC: Distributed Computing, LNCS, vol. 6950 LNCS, 97–109.","apa":"Alistarh, D.-A., &#38; Aspnes, J. (2011). Sub-logarithmic test-and-set against a weak adversary (Vol. 6950 LNCS, pp. 97–109). Presented at the DISC: Distributed Computing, Springer. <a href=\"https://doi.org/10.1007/978-3-642-24100-0_7\">https://doi.org/10.1007/978-3-642-24100-0_7</a>","short":"D.-A. Alistarh, J. Aspnes, in:, Springer, 2011, pp. 97–109.","mla":"Alistarh, Dan-Adrian, and James Aspnes. <i>Sub-Logarithmic Test-and-Set against a Weak Adversary</i>. Vol. 6950 LNCS, Springer, 2011, pp. 97–109, doi:<a href=\"https://doi.org/10.1007/978-3-642-24100-0_7\">10.1007/978-3-642-24100-0_7</a>.","ama":"Alistarh D-A, Aspnes J. Sub-logarithmic test-and-set against a weak adversary. In: Vol 6950 LNCS. Springer; 2011:97-109. doi:<a href=\"https://doi.org/10.1007/978-3-642-24100-0_7\">10.1007/978-3-642-24100-0_7</a>","chicago":"Alistarh, Dan-Adrian, and James Aspnes. “Sub-Logarithmic Test-and-Set against a Weak Adversary,” 6950 LNCS:97–109. Springer, 2011. <a href=\"https://doi.org/10.1007/978-3-642-24100-0_7\">https://doi.org/10.1007/978-3-642-24100-0_7</a>.","ieee":"D.-A. Alistarh and J. Aspnes, “Sub-logarithmic test-and-set against a weak adversary,” presented at the DISC: Distributed Computing, 2011, vol. 6950 LNCS, pp. 97–109."},"year":"2011","acknowledgement":"The work of Dan Alistarh was supported by the NCCR MICS Project. The work of James Aspnes was supported in part by NSF grant CCF-0916389.","article_processing_charge":"No","month":"01","date_published":"2011-01-01T00:00:00Z","conference":{"name":"DISC: Distributed Computing"},"_id":"760","publication_status":"published","oa_version":"None","volume":"6950 LNCS","extern":"1","alternative_title":["LNCS"],"title":"Sub-logarithmic test-and-set against a weak adversary","date_updated":"2023-02-23T13:12:01Z","doi":"10.1007/978-3-642-24100-0_7","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"01","author":[{"full_name":"Alistarh, Dan-Adrian","last_name":"Alistarh","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","first_name":"Dan-Adrian","orcid":"0000-0003-3650-940X"},{"first_name":"James","last_name":"Aspnes","full_name":"Aspnes, James"}],"language":[{"iso":"eng"}]},{"year":"2011","citation":{"ista":"Alistarh D-A, Aspnes J, Censor Hillel K, Gilbert S, Zadimoghaddam M. 2011. Optimal-time adaptive strong renaming, with applications to counting. PODC: Principles of Distributed Computing, 239–248.","short":"D.-A. Alistarh, J. Aspnes, K. Censor Hillel, S. Gilbert, M. Zadimoghaddam, in:, ACM, 2011, pp. 239–248.","mla":"Alistarh, Dan-Adrian, et al. <i>Optimal-Time Adaptive Strong Renaming, with Applications to Counting</i>. ACM, 2011, pp. 239–48, doi:<a href=\"https://doi.org/10.1145/1993806.1993850\">10.1145/1993806.1993850</a>.","apa":"Alistarh, D.-A., Aspnes, J., Censor Hillel, K., Gilbert, S., &#38; Zadimoghaddam, M. (2011). Optimal-time adaptive strong renaming, with applications to counting (pp. 239–248). Presented at the PODC: Principles of Distributed Computing, ACM. <a href=\"https://doi.org/10.1145/1993806.1993850\">https://doi.org/10.1145/1993806.1993850</a>","ama":"Alistarh D-A, Aspnes J, Censor Hillel K, Gilbert S, Zadimoghaddam M. Optimal-time adaptive strong renaming, with applications to counting. In: ACM; 2011:239-248. doi:<a href=\"https://doi.org/10.1145/1993806.1993850\">10.1145/1993806.1993850</a>","chicago":"Alistarh, Dan-Adrian, James Aspnes, Keren Censor Hillel, Seth Gilbert, and Morteza Zadimoghaddam. “Optimal-Time Adaptive Strong Renaming, with Applications to Counting,” 239–48. ACM, 2011. <a href=\"https://doi.org/10.1145/1993806.1993850\">https://doi.org/10.1145/1993806.1993850</a>.","ieee":"D.-A. Alistarh, J. Aspnes, K. Censor Hillel, S. Gilbert, and M. Zadimoghaddam, “Optimal-time adaptive strong renaming, with applications to counting,” presented at the PODC: Principles of Distributed Computing, 2011, pp. 239–248."},"article_processing_charge":"No","acknowledgement":"We would like to thank Hagit Attiya, Rachid Guerraoui\r\nand Prasad Jayanti for useful discussions and support.  We\r\nwould also like to thank the anonymous reviewers for many\r\nuseful comments.","abstract":[{"lang":"eng","text":"We give two new randomized algorithms for strong renaming, both of which work against an adaptive adversary in asynchronous shared memory. The first uses repeated sampling over a sequence of arrays of decreasing size to assign unique names to each of n processes with step complexity O(log3 n). The second transforms any sorting network into a strong adaptive renaming protocol, with an expected cost equal to the depth of the sorting network. Using an AKS sorting network, this gives a strong adaptive renaming algorithm with step complexity O(log k), where k is the contention in the current execution. We show this to be optimal based on a classic lower bound of Jayanti. We also show that any such strong renaming protocol can be used to build a monotone-consistent counter with logarithmic step complexity (at the cost of adding a max register) or a linearizable fetch-and-increment register (at the cost of increasing the step complexity by a logarithmic factor)."}],"publisher":"ACM","publist_id":"6897","date_created":"2018-12-11T11:48:22Z","status":"public","type":"conference","page":"239 - 248","_id":"761","conference":{"name":"PODC: Principles of Distributed Computing"},"date_published":"2011-01-01T00:00:00Z","month":"01","date_updated":"2023-02-23T13:12:17Z","title":"Optimal-time adaptive strong renaming, with applications to counting","extern":"1","publication_status":"published","oa_version":"None","language":[{"iso":"eng"}],"day":"01","author":[{"id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","last_name":"Alistarh","full_name":"Alistarh, Dan-Adrian","orcid":"0000-0003-3650-940X","first_name":"Dan-Adrian"},{"first_name":"James","last_name":"Aspnes","full_name":"Aspnes, James"},{"last_name":"Censor Hillel","full_name":"Censor Hillel, Keren","first_name":"Keren"},{"last_name":"Gilbert","full_name":"Gilbert, Seth","first_name":"Seth"},{"first_name":"Morteza","full_name":"Zadimoghaddam, Morteza","last_name":"Zadimoghaddam"}],"doi":"10.1145/1993806.1993850","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1016/j.neuron.2011.09.026","day":"08","author":[{"first_name":"Lora Beatrice Jaeger","orcid":"0000-0001-9242-5601","id":"56BE8254-C4F0-11E9-8E45-0B23E6697425","last_name":"Sweeney","full_name":"Sweeney, Lora Beatrice Jaeger"},{"full_name":"Chou, Ya-Hui","last_name":"Chou","first_name":"Ya-Hui"},{"last_name":"Wu","full_name":"Wu, Zhuhao","first_name":"Zhuhao"},{"first_name":"William","last_name":"Joo","full_name":"Joo, William"},{"last_name":"Komiyama","full_name":"Komiyama, Takaki","first_name":"Takaki"},{"last_name":"Potter","full_name":"Potter, Christopher J.","first_name":"Christopher J."},{"first_name":"Alex L.","last_name":"Kolodkin","full_name":"Kolodkin, Alex L."},{"first_name":"K. Christopher","last_name":"Garcia","full_name":"Garcia, K. Christopher"},{"first_name":"Liqun","last_name":"Luo","full_name":"Luo, Liqun"}],"language":[{"iso":"eng"}],"volume":72,"publication_identifier":{"issn":["0896-6273"]},"publication_status":"published","oa_version":"None","extern":"1","article_type":"original","intvolume":"        72","date_updated":"2024-01-31T10:13:39Z","title":"Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting","month":"12","date_published":"2011-12-08T00:00:00Z","_id":"7701","page":"734-747","publication":"Neuron","status":"public","type":"journal_article","abstract":[{"lang":"eng","text":"During assembly of the Drosophila olfactory circuit, projection neuron (PN) dendrites prepattern the developing antennal lobe before the arrival of axons from their presynaptic partners, the adult olfactory receptor neurons (ORNs). We previously found that levels of transmembrane Semaphorin-1a, which acts as a receptor, instruct PN dendrite targeting along the dorsolateral-ventromedial axis. Here we show that two secreted semaphorins, Sema-2a and Sema-2b, provide spatial cues for PN dendrite targeting. Sema-2a and Sema-2b proteins are distributed in gradients opposing the Sema-1a protein gradient, and Sema-1a binds to Sema-2a-expressing cells. In Sema-2a and Sema-2b double mutants, PN dendrites that normally target dorsolaterally in the antennal lobe mistarget ventromedially, phenocopying cell-autonomous Sema-1a removal from these PNs. Cell ablation, cell-specific knockdown, and rescue experiments indicate that secreted semaphorins from degenerating larval ORN axons direct dendrite targeting. Thus, a degenerating brain structure instructs the wiring of a developing circuit through the repulsive action of secreted semaphorins."}],"publisher":"Elsevier","date_created":"2020-04-30T10:36:12Z","issue":"5","citation":{"ista":"Sweeney LB, Chou Y-H, Wu Z, Joo W, Komiyama T, Potter CJ, Kolodkin AL, Garcia KC, Luo L. 2011. Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting. Neuron. 72(5), 734–747.","mla":"Sweeney, Lora B., et al. “Secreted Semaphorins from Degenerating Larval ORN Axons Direct Adult Projection Neuron Dendrite Targeting.” <i>Neuron</i>, vol. 72, no. 5, Elsevier, 2011, pp. 734–47, doi:<a href=\"https://doi.org/10.1016/j.neuron.2011.09.026\">10.1016/j.neuron.2011.09.026</a>.","short":"L.B. Sweeney, Y.-H. Chou, Z. Wu, W. Joo, T. Komiyama, C.J. Potter, A.L. Kolodkin, K.C. Garcia, L. Luo, Neuron 72 (2011) 734–747.","apa":"Sweeney, L. B., Chou, Y.-H., Wu, Z., Joo, W., Komiyama, T., Potter, C. J., … Luo, L. (2011). Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2011.09.026\">https://doi.org/10.1016/j.neuron.2011.09.026</a>","ama":"Sweeney LB, Chou Y-H, Wu Z, et al. Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting. <i>Neuron</i>. 2011;72(5):734-747. doi:<a href=\"https://doi.org/10.1016/j.neuron.2011.09.026\">10.1016/j.neuron.2011.09.026</a>","chicago":"Sweeney, Lora B., Ya-Hui Chou, Zhuhao Wu, William Joo, Takaki Komiyama, Christopher J. Potter, Alex L. Kolodkin, K. Christopher Garcia, and Liqun Luo. “Secreted Semaphorins from Degenerating Larval ORN Axons Direct Adult Projection Neuron Dendrite Targeting.” <i>Neuron</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.neuron.2011.09.026\">https://doi.org/10.1016/j.neuron.2011.09.026</a>.","ieee":"L. B. Sweeney <i>et al.</i>, “Secreted semaphorins from degenerating larval ORN axons direct adult projection neuron dendrite targeting,” <i>Neuron</i>, vol. 72, no. 5. Elsevier, pp. 734–747, 2011."},"quality_controlled":"1","year":"2011","article_processing_charge":"No"},{"month":"04","date_published":"2011-04-28T00:00:00Z","_id":"7702","page":"281-298","publication":"Neuron","status":"public","type":"journal_article","abstract":[{"lang":"eng","text":"Longitudinal axon fascicles within the Drosophila embryonic CNS provide connections between body segments and are required for coordinated neural signaling along the anterior-posterior axis. We show here that establishment of select CNS longitudinal tracts and formation of precise mechanosensory afferent innervation to the same CNS region are coordinately regulated by the secreted semaphorins Sema-2a and Sema-2b. Both Sema-2a and Sema-2b utilize the same neuronal receptor, plexin B (PlexB), but serve distinct guidance functions. Localized Sema-2b attraction promotes the initial assembly of a subset of CNS longitudinal projections and subsequent targeting of chordotonal sensory afferent axons to these same longitudinal connectives, whereas broader Sema-2a repulsion serves to prevent aberrant innervation. In the absence of Sema-2b or PlexB, chordotonal afferent connectivity within the CNS is severely disrupted, resulting in specific larval behavioral deficits. These results reveal that distinct semaphorin-mediated guidance functions converge at PlexB and are critical for functional neural circuit assembly."}],"publisher":"Elsevier","date_created":"2020-04-30T10:36:30Z","quality_controlled":"1","citation":{"ista":"Wu Z, Sweeney LB, Ayoob JC, Chak K, Andreone BJ, Ohyama T, Kerr R, Luo L, Zlatic M, Kolodkin AL. 2011. A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS. Neuron. 70(2), 281–298.","mla":"Wu, Zhuhao, et al. “A Combinatorial Semaphorin Code Instructs the Initial Steps of Sensory Circuit Assembly in the Drosophila CNS.” <i>Neuron</i>, vol. 70, no. 2, Elsevier, 2011, pp. 281–98, doi:<a href=\"https://doi.org/10.1016/j.neuron.2011.02.050\">10.1016/j.neuron.2011.02.050</a>.","short":"Z. Wu, L.B. Sweeney, J.C. Ayoob, K. Chak, B.J. Andreone, T. Ohyama, R. Kerr, L. Luo, M. Zlatic, A.L. Kolodkin, Neuron 70 (2011) 281–298.","apa":"Wu, Z., Sweeney, L. B., Ayoob, J. C., Chak, K., Andreone, B. J., Ohyama, T., … Kolodkin, A. L. (2011). A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2011.02.050\">https://doi.org/10.1016/j.neuron.2011.02.050</a>","ama":"Wu Z, Sweeney LB, Ayoob JC, et al. A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS. <i>Neuron</i>. 2011;70(2):281-298. doi:<a href=\"https://doi.org/10.1016/j.neuron.2011.02.050\">10.1016/j.neuron.2011.02.050</a>","chicago":"Wu, Zhuhao, Lora B. Sweeney, Joseph C. Ayoob, Kayam Chak, Benjamin J. Andreone, Tomoko Ohyama, Rex Kerr, Liqun Luo, Marta Zlatic, and Alex L. Kolodkin. “A Combinatorial Semaphorin Code Instructs the Initial Steps of Sensory Circuit Assembly in the Drosophila CNS.” <i>Neuron</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.neuron.2011.02.050\">https://doi.org/10.1016/j.neuron.2011.02.050</a>.","ieee":"Z. Wu <i>et al.</i>, “A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS,” <i>Neuron</i>, vol. 70, no. 2. Elsevier, pp. 281–298, 2011."},"issue":"2","year":"2011","article_processing_charge":"No","doi":"10.1016/j.neuron.2011.02.050","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"28","author":[{"last_name":"Wu","full_name":"Wu, Zhuhao","first_name":"Zhuhao"},{"id":"56BE8254-C4F0-11E9-8E45-0B23E6697425","full_name":"Sweeney, Lora Beatrice Jaeger","last_name":"Sweeney","orcid":"0000-0001-9242-5601","first_name":"Lora Beatrice Jaeger"},{"first_name":"Joseph C.","last_name":"Ayoob","full_name":"Ayoob, Joseph C."},{"first_name":"Kayam","full_name":"Chak, Kayam","last_name":"Chak"},{"first_name":"Benjamin J.","last_name":"Andreone","full_name":"Andreone, Benjamin J."},{"first_name":"Tomoko","full_name":"Ohyama, Tomoko","last_name":"Ohyama"},{"first_name":"Rex","last_name":"Kerr","full_name":"Kerr, Rex"},{"first_name":"Liqun","full_name":"Luo, Liqun","last_name":"Luo"},{"last_name":"Zlatic","full_name":"Zlatic, Marta","first_name":"Marta"},{"first_name":"Alex L.","full_name":"Kolodkin, Alex L.","last_name":"Kolodkin"}],"language":[{"iso":"eng"}],"publication_identifier":{"issn":["0896-6273"]},"volume":70,"publication_status":"published","oa_version":"None","extern":"1","article_type":"original","date_updated":"2024-01-31T10:14:29Z","intvolume":"        70","title":"A combinatorial semaphorin code instructs the initial steps of sensory circuit assembly in the Drosophila CNS"},{"language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1093/beheco/arr110","day":"01","author":[{"orcid":"0000-0001-8982-8813","first_name":"Matthew Richard","full_name":"Robinson, Matthew Richard","last_name":"Robinson","id":"E5D42276-F5DA-11E9-8E24-6303E6697425"}],"title":"Understanding intrasexual competition and sexual selection requires an evolutionary ecology framework","date_updated":"2021-01-12T08:15:16Z","intvolume":"        22","volume":22,"publication_identifier":{"issn":["1465-7279","1045-2249"]},"oa_version":"None","publication_status":"published","extern":"1","article_type":"original","date_published":"2011-11-01T00:00:00Z","_id":"7750","month":"11","publisher":"Oxford University Press","date_created":"2020-04-30T11:01:43Z","quality_controlled":"1","issue":"6","year":"2011","citation":{"chicago":"Robinson, Matthew Richard. “Understanding Intrasexual Competition and Sexual Selection Requires an Evolutionary Ecology Framework.” <i>Behavioral Ecology</i>. Oxford University Press, 2011. <a href=\"https://doi.org/10.1093/beheco/arr110\">https://doi.org/10.1093/beheco/arr110</a>.","ieee":"M. R. Robinson, “Understanding intrasexual competition and sexual selection requires an evolutionary ecology framework,” <i>Behavioral Ecology</i>, vol. 22, no. 6. Oxford University Press, pp. 1143–1144, 2011.","ista":"Robinson MR. 2011. Understanding intrasexual competition and sexual selection requires an evolutionary ecology framework. Behavioral Ecology. 22(6), 1143–1144.","short":"M.R. Robinson, Behavioral Ecology 22 (2011) 1143–1144.","apa":"Robinson, M. R. (2011). Understanding intrasexual competition and sexual selection requires an evolutionary ecology framework. <i>Behavioral Ecology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/beheco/arr110\">https://doi.org/10.1093/beheco/arr110</a>","mla":"Robinson, Matthew Richard. “Understanding Intrasexual Competition and Sexual Selection Requires an Evolutionary Ecology Framework.” <i>Behavioral Ecology</i>, vol. 22, no. 6, Oxford University Press, 2011, pp. 1143–44, doi:<a href=\"https://doi.org/10.1093/beheco/arr110\">10.1093/beheco/arr110</a>.","ama":"Robinson MR. Understanding intrasexual competition and sexual selection requires an evolutionary ecology framework. <i>Behavioral Ecology</i>. 2011;22(6):1143-1144. doi:<a href=\"https://doi.org/10.1093/beheco/arr110\">10.1093/beheco/arr110</a>"},"article_processing_charge":"No","page":"1143-1144","status":"public","type":"journal_article","publication":"Behavioral Ecology"},{"title":"State-dependent function of neocortical chandelier cells","date_updated":"2021-01-12T08:16:36Z","article_type":"original","extern":"1","oa_version":"Published Version","volume":31,"language":[{"iso":"eng"}],"author":[{"first_name":"A. R.","full_name":"Woodruff, A. R.","last_name":"Woodruff"},{"first_name":"L. M.","last_name":"McGarry","full_name":"McGarry, L. M."},{"first_name":"Tim P","orcid":"0000-0003-3295-6181","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","full_name":"Vogels, Tim P","last_name":"Vogels"},{"last_name":"Inan","full_name":"Inan, M.","first_name":"M."},{"first_name":"S. A.","full_name":"Anderson, S. A.","last_name":"Anderson"},{"first_name":"R.","full_name":"Yuste, R.","last_name":"Yuste"}],"day":"7","doi":"10.1523/jneurosci.3894-11.2011","article_processing_charge":"No","oa":1,"issue":"49","publisher":"Society for Neuroscience","external_id":{"pmid":["22159102"]},"status":"public","pmid":1,"_id":"8025","date_published":"2011-12-07T00:00:00Z","intvolume":"        31","publication_status":"published","publication_identifier":{"issn":["0270-6474","1529-2401"]},"user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","citation":{"chicago":"Woodruff, A. R., L. M. McGarry, Tim P Vogels, M. Inan, S. A. Anderson, and R. Yuste. “State-Dependent Function of Neocortical Chandelier Cells.” <i>Journal of Neuroscience</i>. Society for Neuroscience, 2011. <a href=\"https://doi.org/10.1523/jneurosci.3894-11.2011\">https://doi.org/10.1523/jneurosci.3894-11.2011</a>.","ieee":"A. R. Woodruff, L. M. McGarry, T. P. Vogels, M. Inan, S. A. Anderson, and R. Yuste, “State-dependent function of neocortical chandelier cells,” <i>Journal of Neuroscience</i>, vol. 31, no. 49. Society for Neuroscience, pp. 17872–17886, 2011.","ista":"Woodruff AR, McGarry LM, Vogels TP, Inan M, Anderson SA, Yuste R. 2011. State-dependent function of neocortical chandelier cells. Journal of Neuroscience. 31(49), 17872–17886.","ama":"Woodruff AR, McGarry LM, Vogels TP, Inan M, Anderson SA, Yuste R. State-dependent function of neocortical chandelier cells. <i>Journal of Neuroscience</i>. 2011;31(49):17872-17886. doi:<a href=\"https://doi.org/10.1523/jneurosci.3894-11.2011\">10.1523/jneurosci.3894-11.2011</a>","short":"A.R. Woodruff, L.M. McGarry, T.P. Vogels, M. Inan, S.A. Anderson, R. Yuste, Journal of Neuroscience 31 (2011) 17872–17886.","mla":"Woodruff, A. R., et al. “State-Dependent Function of Neocortical Chandelier Cells.” <i>Journal of Neuroscience</i>, vol. 31, no. 49, Society for Neuroscience, 2011, pp. 17872–86, doi:<a href=\"https://doi.org/10.1523/jneurosci.3894-11.2011\">10.1523/jneurosci.3894-11.2011</a>.","apa":"Woodruff, A. R., McGarry, L. M., Vogels, T. P., Inan, M., Anderson, S. A., &#38; Yuste, R. (2011). State-dependent function of neocortical chandelier cells. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href=\"https://doi.org/10.1523/jneurosci.3894-11.2011\">https://doi.org/10.1523/jneurosci.3894-11.2011</a>"},"quality_controlled":"1","year":"2011","date_created":"2020-06-25T13:09:49Z","abstract":[{"lang":"eng","text":"Chandelier (axoaxonic) cells (ChCs) are a distinct group of GABAergic interneurons that innervate the axon initial segments of pyramidal cells. However, their circuit role and the function of their clearly defined anatomical specificity remain unclear. Recent work has demonstrated that chandelier cells can produce depolarizing GABAergic PSPs, occasionally driving postsynaptic targets to spike. On the other hand, other work suggests that ChCs are hyperpolarizing and may have an inhibitory role. These disparate functional effects may reflect heterogeneity among ChCs. Here, using brain slices from transgenic mouse strains, we first demonstrate that, across different neocortical areas and genetic backgrounds, upper Layer 2/3 ChCs belong to a single electrophysiologically and morphologically defined population, extensively sampling Layer 1 inputs with asymmetric dendrites. Consistent with being a single cell type, we find electrical coupling between ChCs. We then investigate the effect of chandelier cell activation on pyramidal neuron spiking in several conditions, ranging from the resting membrane potential to stimuli designed to approximate in vivo membrane potential dynamics. We find that under quiescent conditions, chandelier cells are capable of both promoting and inhibiting spike generation, depending on the postsynaptic membrane potential. However, during in vivo-like membrane potential fluctuations, the dominant postsynaptic effect was a strong inhibition. Thus, neocortical chandelier cells, even from within a homogeneous population, appear to play a dual role in the circuit, helping to activate quiescent pyramidal neurons, while at the same time inhibiting active ones."}],"publication":"Journal of Neuroscience","type":"journal_article","page":"17872-17886","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071969/","open_access":"1"}],"month":"12"},{"_id":"8074","date_published":"2011-12-16T00:00:00Z","issue":"6062","article_processing_charge":"No","publisher":"American Association for the Advancement of Science","pmid":1,"external_id":{"pmid":["22075724"]},"status":"public","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1126/science.336.6083.802-c"}]},"language":[{"iso":"eng"}],"day":"16","author":[{"id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","last_name":"Vogels","full_name":"Vogels, Tim P","orcid":"0000-0003-3295-6181","first_name":"Tim P"},{"full_name":"Sprekeler, H.","last_name":"Sprekeler","first_name":"H."},{"last_name":"Zenke","full_name":"Zenke, F.","first_name":"F."},{"first_name":"C.","last_name":"Clopath","full_name":"Clopath, C."},{"first_name":"W.","full_name":"Gerstner, W.","last_name":"Gerstner"}],"doi":"10.1126/science.1211095","scopus_import":"1","date_updated":"2021-06-02T14:57:22Z","title":"Inhibitory plasticity balances excitation and inhibition in sensory pathways and memory networks","extern":"1","article_type":"original","oa_version":"None","volume":334,"month":"12","year":"2011","citation":{"ama":"Vogels TP, Sprekeler H, Zenke F, Clopath C, Gerstner W. Inhibitory plasticity balances excitation and inhibition in sensory pathways and memory networks. <i>Science</i>. 2011;334(6062):1569-1573. doi:<a href=\"https://doi.org/10.1126/science.1211095\">10.1126/science.1211095</a>","mla":"Vogels, Tim P., et al. “Inhibitory Plasticity Balances Excitation and Inhibition in Sensory Pathways and Memory Networks.” <i>Science</i>, vol. 334, no. 6062, American Association for the Advancement of Science, 2011, pp. 1569–73, doi:<a href=\"https://doi.org/10.1126/science.1211095\">10.1126/science.1211095</a>.","short":"T.P. Vogels, H. Sprekeler, F. Zenke, C. Clopath, W. Gerstner, Science 334 (2011) 1569–1573.","apa":"Vogels, T. P., Sprekeler, H., Zenke, F., Clopath, C., &#38; Gerstner, W. (2011). Inhibitory plasticity balances excitation and inhibition in sensory pathways and memory networks. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1211095\">https://doi.org/10.1126/science.1211095</a>","ista":"Vogels TP, Sprekeler H, Zenke F, Clopath C, Gerstner W. 2011. Inhibitory plasticity balances excitation and inhibition in sensory pathways and memory networks. Science. 334(6062), 1569–1573.","ieee":"T. P. Vogels, H. Sprekeler, F. Zenke, C. Clopath, and W. Gerstner, “Inhibitory plasticity balances excitation and inhibition in sensory pathways and memory networks,” <i>Science</i>, vol. 334, no. 6062. American Association for the Advancement of Science, pp. 1569–1573, 2011.","chicago":"Vogels, Tim P, H. Sprekeler, F. Zenke, C. Clopath, and W. Gerstner. “Inhibitory Plasticity Balances Excitation and Inhibition in Sensory Pathways and Memory Networks.” <i>Science</i>. American Association for the Advancement of Science, 2011. <a href=\"https://doi.org/10.1126/science.1211095\">https://doi.org/10.1126/science.1211095</a>."},"quality_controlled":"1","abstract":[{"lang":"eng","text":"Cortical neurons receive balanced excitatory and inhibitory synaptic currents. Such a balance could be established and maintained in an experience-dependent manner by synaptic plasticity at inhibitory synapses. We show that this mechanism provides an explanation for the sparse firing patterns observed in response to natural stimuli and fits well with a recently observed interaction of excitatory and inhibitory receptive field plasticity. The introduction of inhibitory plasticity in suitable recurrent networks provides a homeostatic mechanism that leads to asynchronous irregular network states. Further, it can accommodate synaptic memories with activity patterns that become indiscernible from the background state but can be reactivated by external stimuli. Our results suggest an essential role of inhibitory plasticity in the formation and maintenance of functional cortical circuitry."}],"date_created":"2020-06-30T13:26:17Z","type":"journal_article","publication":"Science","page":"1569-1573","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","intvolume":"       334","publication_identifier":{"issn":["0036-8075","1095-9203"]},"publication_status":"published"},{"date_published":"2011-09-14T00:00:00Z","_id":"8464","month":"09","publisher":"Wiley","abstract":[{"text":"Nonsymmetric motion: Solid‐state NMR measurements of dipolar coupling tensors provide insight into protein dynamics. The hitherto ignored asymmetry of the dipolar coupling tensor contains valuable information about motional asymmetry, which was used in the first direct site‐resolved measurement of such tensors. Important motions such as rotamer jumps can now be directly detected in the solid state.","lang":"eng"}],"date_created":"2020-09-18T10:09:40Z","year":"2011","quality_controlled":"1","issue":"46","citation":{"ista":"Schanda P, Huber M, Boisbouvier J, Meier BH, Ernst M. 2011. Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion. Angewandte Chemie International Edition. 50(46), 11005–11009.","short":"P. Schanda, M. Huber, J. Boisbouvier, B.H. Meier, M. Ernst, Angewandte Chemie International Edition 50 (2011) 11005–11009.","mla":"Schanda, Paul, et al. “Solid-State NMR Measurements of Asymmetric Dipolar Couplings Provide Insight into Protein Side-Chain Motion.” <i>Angewandte Chemie International Edition</i>, vol. 50, no. 46, Wiley, 2011, pp. 11005–09, doi:<a href=\"https://doi.org/10.1002/anie.201103944\">10.1002/anie.201103944</a>.","apa":"Schanda, P., Huber, M., Boisbouvier, J., Meier, B. H., &#38; Ernst, M. (2011). Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.201103944\">https://doi.org/10.1002/anie.201103944</a>","ama":"Schanda P, Huber M, Boisbouvier J, Meier BH, Ernst M. Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion. <i>Angewandte Chemie International Edition</i>. 2011;50(46):11005-11009. doi:<a href=\"https://doi.org/10.1002/anie.201103944\">10.1002/anie.201103944</a>","chicago":"Schanda, Paul, Matthias Huber, Jérôme Boisbouvier, Beat H. Meier, and Matthias Ernst. “Solid-State NMR Measurements of Asymmetric Dipolar Couplings Provide Insight into Protein Side-Chain Motion.” <i>Angewandte Chemie International Edition</i>. Wiley, 2011. <a href=\"https://doi.org/10.1002/anie.201103944\">https://doi.org/10.1002/anie.201103944</a>.","ieee":"P. Schanda, M. Huber, J. Boisbouvier, B. H. Meier, and M. Ernst, “Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion,” <i>Angewandte Chemie International Edition</i>, vol. 50, no. 46. Wiley, pp. 11005–11009, 2011."},"article_processing_charge":"No","page":"11005-11009","type":"journal_article","publication":"Angewandte Chemie International Edition","status":"public","language":[{"iso":"eng"}],"related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1002/anie.201206663"}]},"doi":"10.1002/anie.201103944","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"14","author":[{"first_name":"Paul","orcid":"0000-0002-9350-7606","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","last_name":"Schanda","full_name":"Schanda, Paul"},{"last_name":"Huber","full_name":"Huber, Matthias","first_name":"Matthias"},{"full_name":"Boisbouvier, Jérôme","last_name":"Boisbouvier","first_name":"Jérôme"},{"first_name":"Beat H.","last_name":"Meier","full_name":"Meier, Beat H."},{"full_name":"Ernst, Matthias","last_name":"Ernst","first_name":"Matthias"}],"date_updated":"2021-01-12T08:19:27Z","intvolume":"        50","title":"Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion","volume":50,"publication_identifier":{"issn":["1433-7851"]},"oa_version":"None","publication_status":"published","extern":"1","article_type":"original"}]