[{"article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.devcel.2011.05.018"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","title":"Balancing parental contributions in plant embryonic gene activation","citation":{"short":"D. Zilberman, Balancing Parental Contributions in Plant Embryonic Gene Activation, Elsevier, 2011.","mla":"Zilberman, Daniel. “Balancing Parental Contributions in Plant Embryonic Gene Activation.” <i>Developmental Cell</i>, vol. 20, no. 6, Elsevier, 2011, pp. 735–36, doi:<a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">10.1016/j.devcel.2011.05.018</a>.","ista":"Zilberman D. 2011. Balancing parental contributions in plant embryonic gene activation, Elsevier,p.","apa":"Zilberman, D. (2011). <i>Balancing parental contributions in plant embryonic gene activation</i>. <i>Developmental Cell</i> (Vol. 20, pp. 735–736). Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">https://doi.org/10.1016/j.devcel.2011.05.018</a>","chicago":"Zilberman, Daniel. <i>Balancing Parental Contributions in Plant Embryonic Gene Activation</i>. <i>Developmental Cell</i>. Vol. 20. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">https://doi.org/10.1016/j.devcel.2011.05.018</a>.","ieee":"D. Zilberman, <i>Balancing parental contributions in plant embryonic gene activation</i>, vol. 20, no. 6. Elsevier, 2011, pp. 735–736.","ama":"Zilberman D. <i>Balancing Parental Contributions in Plant Embryonic Gene Activation</i>. Vol 20. Elsevier; 2011:735-736. doi:<a href=\"https://doi.org/10.1016/j.devcel.2011.05.018\">10.1016/j.devcel.2011.05.018</a>"},"volume":20,"day":"14","date_updated":"2021-12-14T08:34:37Z","publication_identifier":{"issn":["1534-5807"],"eissn":["1878-1551"]},"year":"2011","type":"other_academic_publication","language":[{"iso":"eng"}],"date_published":"2011-06-14T00:00:00Z","department":[{"_id":"DaZi"}],"publication":"Developmental Cell","month":"06","status":"public","oa":1,"quality_controlled":"1","_id":"9522","date_created":"2021-06-08T06:23:39Z","page":"735-736","publisher":"Elsevier","abstract":[{"lang":"eng","text":"Little is known about chromatin remodeling events immediately after fertilization. A recent report by Autran et al. (2011) in Cell now shows that chromatin regulatory pathways that silence transposable elements are responsible for global delayed activation of gene expression in the early Arabidopsis embryo."}],"external_id":{"pmid":["21664571"]},"pmid":1,"author":[{"first_name":"Daniel","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","last_name":"Zilberman","orcid":"0000-0002-0123-8649","full_name":"Zilberman, Daniel"}],"doi":"10.1016/j.devcel.2011.05.018","oa_version":"Published Version","issue":"6","publication_status":"published","intvolume":"        20","extern":"1"},{"date_updated":"2026-06-18T19:56:17Z","day":"01","type":"conference","publication_identifier":{"isbn":["9783642236716"],"issn":["0302-9743"],"eissn":["1611-3349"]},"year":"2011","date_published":"2011-08-01T00:00:00Z","language":[{"iso":"eng"}],"department":[{"_id":"HeEd"}],"main_file_link":[{"open_access":"1","url":"http://hdl.handle.net/11441/30766"}],"article_processing_charge":"No","conference":{"location":"Seville, Spain","end_date":"2011-08-31","name":"CAIP: International Conference on Computer Analysis of Images and Patterns","start_date":"2011-08-29"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Incremental-decremental algorithm for computing AT-models and persistent homology","citation":{"ista":"Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. 2011. Incremental-decremental algorithm for computing AT-models and persistent homology. Computer Analysis of Images and Patterns. CAIP: International Conference on Computer Analysis of Images and Patterns, LNCS, vol. 6854, 286–293.","mla":"Gonzalez-Diaz, Rocio, et al. “Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.” <i>Computer Analysis of Images and Patterns</i>, vol. 6854, Springer Nature, 2011, pp. 286–93, doi:<a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">10.1007/978-3-642-23672-3_35</a>.","short":"R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis of Images and Patterns, Springer Nature, 2011, pp. 286–293.","ama":"Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. Incremental-decremental algorithm for computing AT-models and persistent homology. In: <i>Computer Analysis of Images and Patterns</i>. Vol 6854. Springer Nature; 2011:286-293. doi:<a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">10.1007/978-3-642-23672-3_35</a>","chicago":"Gonzalez-Diaz, Rocio, Adrian Ion, Maria Jose Jimenez, and Regina Poyatos. “Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.” In <i>Computer Analysis of Images and Patterns</i>, 6854:286–93. Springer Nature, 2011. <a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">https://doi.org/10.1007/978-3-642-23672-3_35</a>.","ieee":"R. Gonzalez-Diaz, A. Ion, M. J. Jimenez, and R. Poyatos, “Incremental-decremental algorithm for computing AT-models and persistent homology,” in <i>Computer Analysis of Images and Patterns</i>, Seville, Spain, 2011, vol. 6854, pp. 286–293.","apa":"Gonzalez-Diaz, R., Ion, A., Jimenez, M. J., &#38; Poyatos, R. (2011). Incremental-decremental algorithm for computing AT-models and persistent homology. In <i>Computer Analysis of Images and Patterns</i> (Vol. 6854, pp. 286–293). Seville, Spain: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-642-23672-3_35\">https://doi.org/10.1007/978-3-642-23672-3_35</a>"},"volume":6854,"_id":"9648","scopus_import":"1","date_created":"2021-07-11T22:01:19Z","page":"286-293","publisher":"Springer Nature","abstract":[{"text":"In this paper, we establish a correspondence between the incremental algorithm for computing AT-models [8,9] and the one for computing persistent homology [6,14,15]. We also present a decremental algorithm for computing AT-models that allows to extend the persistence computation to a wider setting. Finally, we show how to combine incremental and decremental techniques for persistent homology computation.","lang":"eng"}],"publication":"Computer Analysis of Images and Patterns","month":"08","oa":1,"status":"public","ddc":["500"],"quality_controlled":"1","author":[{"first_name":"Rocio","full_name":"Gonzalez-Diaz, Rocio","last_name":"Gonzalez-Diaz"},{"last_name":"Ion","full_name":"Ion, Adrian","first_name":"Adrian","id":"29F89302-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Maria Jose","full_name":"Jimenez, Maria Jose","last_name":"Jimenez"},{"first_name":"Regina","last_name":"Poyatos","full_name":"Poyatos, Regina"}],"doi":"10.1007/978-3-642-23672-3_35","oa_version":"Published Version","alternative_title":["LNCS"],"publication_status":"published","intvolume":"      6854"},{"author":[{"id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym","full_name":"Maksym Serbyn","last_name":"Serbyn","orcid":"0000-0002-2399-5827"},{"last_name":"Senthil","full_name":"Senthil, Todadri S","first_name":"Todadri"},{"last_name":"Lee","full_name":"Lee, Patrick","first_name":"Patrick"}],"date_updated":"2021-01-12T08:22:18Z","day":"03","year":"2011","type":"journal_article","doi":"10.1103/PhysRevB.84.180403","date_published":"2011-11-03T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1108.3070"}],"citation":{"short":"M. Serbyn, T. Senthil, P. Lee, Physical Review B - Condensed Matter and Materials Physics 84 (2011).","mla":"Serbyn, Maksym, et al. “Exotic S=1 Spin-Liquid State with Fermionic Excitations on the Triangular Lattice.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 84, no. 18, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">10.1103/PhysRevB.84.180403</a>.","ista":"Serbyn M, Senthil T, Lee P. 2011. Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice. Physical Review B - Condensed Matter and Materials Physics. 84(18).","ieee":"M. Serbyn, T. Senthil, and P. Lee, “Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 84, no. 18. American Physical Society, 2011.","ama":"Serbyn M, Senthil T, Lee P. Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2011;84(18). doi:<a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">10.1103/PhysRevB.84.180403</a>","chicago":"Serbyn, Maksym, Todadri Senthil, and Patrick Lee. “Exotic S=1 Spin-Liquid State with Fermionic Excitations on the Triangular Lattice.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">https://doi.org/10.1103/PhysRevB.84.180403</a>.","apa":"Serbyn, M., Senthil, T., &#38; Lee, P. (2011). Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.84.180403\">https://doi.org/10.1103/PhysRevB.84.180403</a>"},"title":"Exotic S=1 spin-liquid state with fermionic excitations on the triangular lattice","volume":84,"date_created":"2018-12-11T11:49:27Z","_id":"967","publist_id":"6432","extern":1,"publisher":"American Physical Society","abstract":[{"lang":"eng","text":"Motivated by recent experiments on the material Ba3NiSb 2O9, we consider a spin-one quantum antiferromagnet on a triangular lattice with the Heisenberg bilinear and biquadratic exchange interactions and a single-ion anisotropy. Using a fermionic &quot;triplon&quot; representation for spins, we study the phase diagram within mean-field theory. In addition to a fully gapped spin-liquid ground state, we find a state where one gapless triplon mode with a Fermi surface coexists with d+id topological pairing of the other triplons. Despite the existence of a Fermi surface, this ground state has fully gapped bulk spin excitations. Such a state has linear in-temperature specific heat and constant in-plane spin susceptibility, with an unusually high Wilson ratio."}],"status":"public","oa":1,"month":"11","publication":"Physical Review B - Condensed Matter and Materials Physics","publication_status":"published","issue":"18","quality_controlled":0,"intvolume":"        84"},{"quality_controlled":0,"intvolume":"       106","status":"public","month":"04","publication":"Physical Review Letters","publication_status":"published","issue":"13","extern":1,"publisher":"American Physical Society","abstract":[{"text":"A Reply to the Comment by Andrei Sergeev, M. Reizer, and V. Mitin.","lang":"eng"}],"date_created":"2018-12-11T11:49:27Z","publist_id":"6433","_id":"968","citation":{"ieee":"M. Serbyn, M. Skvortsov, A. Varlamov, and V. Galitski, “Serbyn et al. Reply:,” <i>Physical Review Letters</i>, vol. 106, no. 13. American Physical Society, 2011.","chicago":"Serbyn, Maksym, Mikhail Skvortsov, Andrei Varlamov, and Victor Galitski. “Serbyn et Al. Reply:” <i>Physical Review Letters</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">https://doi.org/10.1103/PhysRevLett.106.139702</a>.","apa":"Serbyn, M., Skvortsov, M., Varlamov, A., &#38; Galitski, V. (2011). Serbyn et al. Reply: <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">https://doi.org/10.1103/PhysRevLett.106.139702</a>","ama":"Serbyn M, Skvortsov M, Varlamov A, Galitski V. Serbyn et al. Reply: <i>Physical Review Letters</i>. 2011;106(13). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">10.1103/PhysRevLett.106.139702</a>","ista":"Serbyn M, Skvortsov M, Varlamov A, Galitski V. 2011. Serbyn et al. Reply: Physical Review Letters. 106(13).","mla":"Serbyn, Maksym, et al. “Serbyn et Al. Reply:” <i>Physical Review Letters</i>, vol. 106, no. 13, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.106.139702\">10.1103/PhysRevLett.106.139702</a>.","short":"M. Serbyn, M. Skvortsov, A. Varlamov, V. Galitski, Physical Review Letters 106 (2011)."},"title":"Serbyn et al. Reply:","volume":106,"date_published":"2011-04-01T00:00:00Z","day":"01","author":[{"full_name":"Maksym Serbyn","last_name":"Serbyn","orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym"},{"last_name":"Skvortsov","full_name":"Skvortsov, Mikhail A","first_name":"Mikhail"},{"last_name":"Varlamov","full_name":"Varlamov, Andrei A","first_name":"Andrei"},{"last_name":"Galitski","full_name":"Galitski, Victor M","first_name":"Victor"}],"date_updated":"2021-01-12T08:22:19Z","year":"2011","type":"journal_article","doi":"10.1103/PhysRevLett.106.139702"},{"status":"public","oa":1,"month":"01","publication":"Physical Review B - Condensed Matter and Materials Physics","publication_status":"published","issue":"2","quality_controlled":0,"intvolume":"        83","date_created":"2018-12-11T11:49:28Z","_id":"969","publist_id":"6434","extern":1,"publisher":"American Physical Society","abstract":[{"lang":"eng","text":"We investigate the isotope effect on the London penetration depth of a superconductor which measures n S/m*, the ratio of superfluid density to effective mass. We use a simplified model of electrons weakly coupled to a single phonon frequency ω E, but assume that the energy gap Δ does not have any isotope effect. Nevertheless, we find an isotope effect for n S/m* which is significant if Δ is sufficiently large that it becomes comparable to ω E, a regime of interest to high-T c cuprate superconductors and possibly other families of unconventional superconductors with relatively high T c. Our model is too simple to describe the cuprates and it gives the wrong sign of the isotope effect when compared with experiment, but it is a proof of principle that the isotope effect exists for n S/m* in materials where the pairing gap and T c are not of phonon origin and have no isotope effect."}],"main_file_link":[{"url":"https://arxiv.org/abs/1009.2429","open_access":"1"}],"citation":{"short":"M. Serbyn, P. Lee, Physical Review B - Condensed Matter and Materials Physics 83 (2011).","mla":"Serbyn, Maksym, and Patrick Lee. “Isotope Effect on the Superfluid Density in Conventional and High-Temperature Superconductors.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 83, no. 2, American Physical Society, 2011, doi:<a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">10.1103/PhysRevB.83.024506</a>.","ista":"Serbyn M, Lee P. 2011. Isotope effect on the superfluid density in conventional and high-temperature superconductors. Physical Review B - Condensed Matter and Materials Physics. 83(2).","ieee":"M. Serbyn and P. Lee, “Isotope effect on the superfluid density in conventional and high-temperature superconductors,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 83, no. 2. American Physical Society, 2011.","apa":"Serbyn, M., &#38; Lee, P. (2011). Isotope effect on the superfluid density in conventional and high-temperature superconductors. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">https://doi.org/10.1103/PhysRevB.83.024506</a>","ama":"Serbyn M, Lee P. Isotope effect on the superfluid density in conventional and high-temperature superconductors. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2011;83(2). doi:<a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">10.1103/PhysRevB.83.024506</a>","chicago":"Serbyn, Maksym, and Patrick Lee. “Isotope Effect on the Superfluid Density in Conventional and High-Temperature Superconductors.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2011. <a href=\"https://doi.org/10.1103/PhysRevB.83.024506\">https://doi.org/10.1103/PhysRevB.83.024506</a>."},"title":"Isotope effect on the superfluid density in conventional and high-temperature superconductors","volume":83,"date_updated":"2021-01-12T08:22:19Z","day":"19","author":[{"id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym","full_name":"Maksym Serbyn","last_name":"Serbyn","orcid":"0000-0002-2399-5827"},{"last_name":"Lee","full_name":"Lee, Patrick","first_name":"Patrick"}],"type":"journal_article","year":"2011","doi":"10.1103/PhysRevB.83.024506","date_published":"2011-01-19T00:00:00Z"},{"citation":{"ama":"Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas). 2011. doi:<a href=\"https://doi.org/10.5061/dryad.299h8\">10.5061/dryad.299h8</a>","apa":"Palero, F., Abello, P., Macpherson, E., Beaumont, M., &#38; Pascual, M. (2011). Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas). IST Austria. <a href=\"https://doi.org/10.5061/dryad.299h8\">https://doi.org/10.5061/dryad.299h8</a>","ieee":"F. Palero, P. Abello, E. Macpherson, M. Beaumont, and M. Pascual, “Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas).” IST Austria, 2011.","chicago":"Palero, Ferran, Pere Abello, Enrique Macpherson, Mark Beaumont, and Marta Pascual. “Data from: Effect of Oceanographic Barriers and Overfishing on the Population Genetic Structure of the European Spiny Lobster (Palinurus Elephas).” IST Austria, 2011. <a href=\"https://doi.org/10.5061/dryad.299h8\">https://doi.org/10.5061/dryad.299h8</a>.","short":"F. Palero, P. Abello, E. Macpherson, M. Beaumont, M. Pascual, (2011).","mla":"Palero, Ferran, et al. <i>Data from: Effect of Oceanographic Barriers and Overfishing on the Population Genetic Structure of the European Spiny Lobster (Palinurus Elephas)</i>. IST Austria, 2011, doi:<a href=\"https://doi.org/10.5061/dryad.299h8\">10.5061/dryad.299h8</a>.","ista":"Palero F, Abello P, Macpherson E, Beaumont M, Pascual M. 2011. Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas), IST Austria, <a href=\"https://doi.org/10.5061/dryad.299h8\">10.5061/dryad.299h8</a>."},"title":"Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas)","related_material":{"record":[{"id":"3395","status":"public","relation":"used_in_publication"}]},"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.299h8"}],"department":[{"_id":"NiBa"}],"date_published":"2011-05-12T00:00:00Z","oa_version":"Published Version","year":"2011","type":"research_data_reference","doi":"10.5061/dryad.299h8","author":[{"id":"3F0E2A22-F248-11E8-B48F-1D18A9856A87","first_name":"Ferran","full_name":"Palero, Ferran","orcid":"0000-0002-0343-8329","last_name":"Palero"},{"first_name":"Pere","full_name":"Abello, Pere","last_name":"Abello"},{"full_name":"Macpherson, Enrique","last_name":"Macpherson","first_name":"Enrique"},{"last_name":"Beaumont","full_name":"Beaumont, Mark","first_name":"Mark"},{"first_name":"Marta","last_name":"Pascual","full_name":"Pascual, Marta"}],"date_updated":"2025-09-30T08:42:31Z","day":"12","status":"public","oa":1,"month":"05","abstract":[{"text":"Defining population structure and genetic diversity levels is of the utmost importance for developing efficient conservation strategies. Overfishing has caused mean annual catches of the European spiny lobster (Palinurus elephas) to decrease alarmingly along its distribution area. In this context, there is a need for comprehensive studies to evaluate the genetic health of the exploited populations. The present work is based on a set of 10 nuclear markers amplified in 331 individuals from 10 different localities covering most of P. elephas distribution area. Samples from Atlantic and Mediterranean basins showed small but significant differences, indicating that P. elephas populations do not behave as a single panmictic unit but form two partially-overlapping groups. Despite intense overfishing, our dataset did not recover a recent bottleneck signal, and showed a large and stable historical effective size instead. This result could be accounted for by specific life history traits (reproduction and longevity) and the limitations of molecular markers in covering very recent timescales for non temporal samples. Our study emphasizes the necessity of integrating information on effective population sizes and life history parameters when evaluating population connectivity levels from genetic data.","lang":"eng"}],"publisher":"IST Austria","date_created":"2021-08-02T07:11:19Z","_id":"9762"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218319/"}],"volume":101,"title":"Noise underlies switching behavior of the bacterial flagellum","citation":{"ista":"Park H, Oikonomou P, Guet CC, Cluzel P. 2011. Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. 101(10), 2336–2340.","mla":"Park, Heungwon, et al. “Noise Underlies Switching Behavior of the Bacterial Flagellum.” <i>Biophysical Journal</i>, vol. 101, no. 10, Elsevier, 2011, pp. 2336–40, doi:<a href=\"https://doi.org/10.1016/j.bpj.2011.09.040\">10.1016/j.bpj.2011.09.040</a>.","short":"H. Park, P. Oikonomou, C.C. Guet, P. Cluzel, Biophysical Journal 101 (2011) 2336–2340.","ieee":"H. Park, P. Oikonomou, C. C. Guet, and P. Cluzel, “Noise underlies switching behavior of the bacterial flagellum,” <i>Biophysical Journal</i>, vol. 101, no. 10. Elsevier, pp. 2336–2340, 2011.","chicago":"Park, Heungwon, Panos Oikonomou, Calin C Guet, and Philippe Cluzel. “Noise Underlies Switching Behavior of the Bacterial Flagellum.” <i>Biophysical Journal</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.bpj.2011.09.040\">https://doi.org/10.1016/j.bpj.2011.09.040</a>.","apa":"Park, H., Oikonomou, P., Guet, C. C., &#38; Cluzel, P. (2011). Noise underlies switching behavior of the bacterial flagellum. <i>Biophysical Journal</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.bpj.2011.09.040\">https://doi.org/10.1016/j.bpj.2011.09.040</a>","ama":"Park H, Oikonomou P, Guet CC, Cluzel P. Noise underlies switching behavior of the bacterial flagellum. <i>Biophysical Journal</i>. 2011;101(10):2336-2340. doi:<a href=\"https://doi.org/10.1016/j.bpj.2011.09.040\">10.1016/j.bpj.2011.09.040</a>"},"year":"2011","publication_identifier":{"issn":["0006-3495"]},"type":"journal_article","day":"16","date_updated":"2026-06-18T19:06:05Z","department":[{"_id":"CaGu"}],"language":[{"iso":"eng"}],"date_published":"2011-11-16T00:00:00Z","isi":1,"publication":"Biophysical Journal","month":"11","status":"public","oa":1,"quality_controlled":"1","ddc":["570"],"_id":"6496","page":"2336-2340","date_created":"2019-05-28T11:54:29Z","scopus_import":"1","abstract":[{"text":"We report the switching behavior of the full bacterial flagellum system that includes the filament and the motor in wild-type Escherichia coli cells. In sorting the motor behavior by the clockwise bias, we find that the distributions of the clockwise (CW) and counterclockwise (CCW) intervals are either exponential or nonexponential with long tails. At low bias, CW intervals are exponentially distributed and CCW intervals exhibit long tails. At intermediate CW bias (0.5) both CW and CCW intervals are mainly exponentially distributed. A simple model suggests that these two distinct switching behaviors are governed by the presence of signaling noise within the chemotaxis network. Low noise yields exponentially distributed intervals, whereas large noise yields nonexponential behavior with long tails. These drastically different motor statistics may play a role in optimizing bacterial behavior for a wide range of environmental conditions.","lang":"eng"}],"publisher":"Elsevier","external_id":{"isi":["000297143500008"],"pmid":["22098731"]},"pmid":1,"doi":"10.1016/j.bpj.2011.09.040","author":[{"last_name":"Park","full_name":"Park, Heungwon","first_name":"Heungwon"},{"first_name":"Panos","full_name":"Oikonomou, Panos","last_name":"Oikonomou"},{"first_name":"Calin C","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","last_name":"Guet","orcid":"0000-0001-6220-2052","full_name":"Guet, Calin C"},{"last_name":"Cluzel","full_name":"Cluzel, Philippe","first_name":"Philippe"}],"oa_version":"Published Version","issue":"10","publication_status":"published","intvolume":"       101"},{"_id":"6749","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","short":"CC BY-NC-SA (4.0)","image":"/images/cc_by_nc_sa.png"},"date_created":"2019-07-31T09:44:24Z","page":"127-177","publisher":"IPOL Image Processing On Line","abstract":[{"lang":"eng","text":"This article refers to algorithms based on finite difference schemes for computing mean and affine curvature evolutions of digital images, introduced by Alvarez and Morel [L. Alvarez, J.M. Morel, “Formalization and computational aspects of image analysis”, Acta Numerica, pp. 159, 1994]. We discuss consistency, stability and convergence. Our analysis focuses on some possible choices of the parameters, choices that generate multiple variants in the implementations. Meaningful visual examples on how the algorithms actually work are provided."}],"month":"09","publication":"Image Processing On Line","oa":1,"status":"public","license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","ddc":["000"],"quality_controlled":"1","file_date_updated":"2020-07-14T12:47:39Z","date_updated":"2021-01-12T08:08:50Z","day":"13","type":"journal_article","publication_identifier":{"issn":["2105-1232"]},"year":"2011","date_published":"2011-09-13T00:00:00Z","language":[{"iso":"eng"}],"has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Finite difference schemes for MCM and AMSS","citation":{"mla":"Mondelli, Marco, and Adina Ciomaga. “Finite Difference Schemes for MCM and AMSS.” <i>Image Processing On Line</i>, vol. 1, IPOL Image Processing On Line, 2011, pp. 127–77, doi:<a href=\"https://doi.org/10.5201/ipol.2011.cm_fds\">10.5201/ipol.2011.cm_fds</a>.","ista":"Mondelli M, Ciomaga A. 2011. Finite difference schemes for MCM and AMSS. Image Processing On Line. 1, 127–177.","short":"M. Mondelli, A. Ciomaga, Image Processing On Line 1 (2011) 127–177.","apa":"Mondelli, M., &#38; Ciomaga, A. (2011). Finite difference schemes for MCM and AMSS. <i>Image Processing On Line</i>. IPOL Image Processing On Line. <a href=\"https://doi.org/10.5201/ipol.2011.cm_fds\">https://doi.org/10.5201/ipol.2011.cm_fds</a>","chicago":"Mondelli, Marco, and Adina Ciomaga. “Finite Difference Schemes for MCM and AMSS.” <i>Image Processing On Line</i>. IPOL Image Processing On Line, 2011. <a href=\"https://doi.org/10.5201/ipol.2011.cm_fds\">https://doi.org/10.5201/ipol.2011.cm_fds</a>.","ama":"Mondelli M, Ciomaga A. Finite difference schemes for MCM and AMSS. <i>Image Processing On Line</i>. 2011;1:127-177. doi:<a href=\"https://doi.org/10.5201/ipol.2011.cm_fds\">10.5201/ipol.2011.cm_fds</a>","ieee":"M. Mondelli and A. Ciomaga, “Finite difference schemes for MCM and AMSS,” <i>Image Processing On Line</i>, vol. 1. IPOL Image Processing On Line, pp. 127–177, 2011."},"volume":1,"extern":"1","publication_status":"published","intvolume":"         1","file":[{"creator":"dernst","file_name":"2011_IPOL_Mondelli.pdf","date_created":"2019-08-01T06:34:21Z","date_updated":"2020-07-14T12:47:39Z","access_level":"open_access","relation":"main_file","file_id":"6751","content_type":"application/pdf","file_size":2793903,"checksum":"910710811224c633202791e0c217d05d"}],"author":[{"full_name":"Mondelli, Marco","last_name":"Mondelli","orcid":"0000-0002-3242-7020","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco"},{"last_name":"Ciomaga","full_name":"Ciomaga, Adina","first_name":"Adina"}],"doi":"10.5201/ipol.2011.cm_fds","oa_version":"Published Version"},{"publication_status":"published","status":"public","month":"01","publication":"Proceedings of the International Student Conference on Pure and Applied Mathematics","quality_controlled":"1","page":"137-156","date_created":"2019-08-05T12:20:58Z","_id":"6767","abstract":[{"text":"In the present paper we give a thorough analysis of two finite difference schemes for the Mean Curvature Motion and its affine variant, the Affine Morphological Scale Space, schemes introduced in the Image Processing framework. This analysis brings in a series of parameters that allow us to compute an accurate discrete evolution of curvature motions.\r\nThe choice of these parameters is based on intrinsic geometric properties of the evolution equations for linear, radial and elliptical functions. In the last part we present several examples, underlining the main advantages of the algorithms (the removal of pixelization effects and JPEG artifacts) as well as their major drawbacks (absence of contrast invariance and grid dependence). A detailed explanatory report, the ANSI C implementations and an on-line demo can be found at http://www.ipol.im/.","lang":"eng"}],"extern":"1","publisher":"Editura Universitãtii „Alexandru Ioan Cuza” Iasi","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","conference":{"location":"Iasi, Romania","name":"ISCOPAM: International Student Conference on Pure and Applied Mathematics","end_date":"2010-07-16","start_date":"2010-07-12"},"citation":{"short":"M. Mondelli, A. Ciomaga, in:, Proceedings of the International Student Conference on Pure and Applied Mathematics, Editura Universitãtii „Alexandru Ioan Cuza” Iasi, 2011, pp. 137–156.","mla":"Mondelli, Marco, and Adina Ciomaga. “On Finite Difference Schemes for Curvature Motions.” <i>Proceedings of the International Student Conference on Pure and Applied Mathematics</i>, Editura Universitãtii „Alexandru Ioan Cuza” Iasi, 2011, pp. 137–56, doi:<a href=\"https://doi.org/10.13140/2.1.1862.4646\">10.13140/2.1.1862.4646</a>.","ista":"Mondelli M, Ciomaga A. 2011. On finite difference schemes for curvature motions. Proceedings of the International Student Conference on Pure and Applied Mathematics. ISCOPAM: International Student Conference on Pure and Applied Mathematics, 137–156.","chicago":"Mondelli, Marco, and Adina Ciomaga. “On Finite Difference Schemes for Curvature Motions.” In <i>Proceedings of the International Student Conference on Pure and Applied Mathematics</i>, 137–56. Editura Universitãtii „Alexandru Ioan Cuza” Iasi, 2011. <a href=\"https://doi.org/10.13140/2.1.1862.4646\">https://doi.org/10.13140/2.1.1862.4646</a>.","apa":"Mondelli, M., &#38; Ciomaga, A. (2011). On finite difference schemes for curvature motions. In <i>Proceedings of the International Student Conference on Pure and Applied Mathematics</i> (pp. 137–156). Iasi, Romania: Editura Universitãtii „Alexandru Ioan Cuza” Iasi. <a href=\"https://doi.org/10.13140/2.1.1862.4646\">https://doi.org/10.13140/2.1.1862.4646</a>","ieee":"M. Mondelli and A. Ciomaga, “On finite difference schemes for curvature motions,” in <i>Proceedings of the International Student Conference on Pure and Applied Mathematics</i>, Iasi, Romania, 2011, pp. 137–156.","ama":"Mondelli M, Ciomaga A. On finite difference schemes for curvature motions. In: <i>Proceedings of the International Student Conference on Pure and Applied Mathematics</i>. Editura Universitãtii „Alexandru Ioan Cuza” Iasi; 2011:137-156. doi:<a href=\"https://doi.org/10.13140/2.1.1862.4646\">10.13140/2.1.1862.4646</a>"},"title":"On finite difference schemes for curvature motions","year":"2011","publication_identifier":{"isbn":["978-973-703-602-5"]},"type":"conference","doi":"10.13140/2.1.1862.4646","author":[{"full_name":"Mondelli, Marco","last_name":"Mondelli","orcid":"0000-0002-3242-7020","id":"27EB676C-8706-11E9-9510-7717E6697425","first_name":"Marco"},{"last_name":"Ciomaga","full_name":"Ciomaga, Adina","first_name":"Adina"}],"date_updated":"2021-01-12T08:08:56Z","day":"01","language":[{"iso":"eng"}],"date_published":"2011-01-01T00:00:00Z","oa_version":"None"},{"date_updated":"2021-01-12T08:11:43Z","author":[{"first_name":"E K H","last_name":"Salje","full_name":"Salje, E K H"},{"last_name":"Safarik","full_name":"Safarik, D J","first_name":"D J"},{"first_name":"R D","full_name":"Taylor, R D","last_name":"Taylor"},{"first_name":"M P","full_name":"Pasternak, M P","last_name":"Pasternak"},{"full_name":"Modic, Kimberly A","orcid":"0000-0001-9760-3147","last_name":"Modic","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","first_name":"Kimberly A"},{"first_name":"L A","last_name":"Groat","full_name":"Groat, L A"},{"last_name":"Lashley","full_name":"Lashley, J C","first_name":"J C"}],"day":"21","year":"2011","publication_identifier":{"issn":["0953-8984","1361-648X"]},"type":"journal_article","doi":"10.1088/0953-8984/23/10/105402","language":[{"iso":"eng"}],"date_published":"2011-02-21T00:00:00Z","oa_version":"None","article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"apa":"Salje, E. K. H., Safarik, D. J., Taylor, R. D., Pasternak, M. P., Modic, K. A., Groat, L. A., &#38; Lashley, J. C. (2011). Determination of iron sites and the amount of amorphization in radiation-damaged titanite (CaSiTiO5). <i>Journal of Physics: Condensed Matter</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/0953-8984/23/10/105402\">https://doi.org/10.1088/0953-8984/23/10/105402</a>","ieee":"E. K. H. Salje <i>et al.</i>, “Determination of iron sites and the amount of amorphization in radiation-damaged titanite (CaSiTiO5),” <i>Journal of Physics: Condensed Matter</i>, vol. 23, no. 10. IOP Publishing, 2011.","ama":"Salje EKH, Safarik DJ, Taylor RD, et al. Determination of iron sites and the amount of amorphization in radiation-damaged titanite (CaSiTiO5). <i>Journal of Physics: Condensed Matter</i>. 2011;23(10). doi:<a href=\"https://doi.org/10.1088/0953-8984/23/10/105402\">10.1088/0953-8984/23/10/105402</a>","chicago":"Salje, E K H, D J Safarik, R D Taylor, M P Pasternak, Kimberly A Modic, L A Groat, and J C Lashley. “Determination of Iron Sites and the Amount of Amorphization in Radiation-Damaged Titanite (CaSiTiO5).” <i>Journal of Physics: Condensed Matter</i>. IOP Publishing, 2011. <a href=\"https://doi.org/10.1088/0953-8984/23/10/105402\">https://doi.org/10.1088/0953-8984/23/10/105402</a>.","short":"E.K.H. Salje, D.J. Safarik, R.D. Taylor, M.P. Pasternak, K.A. Modic, L.A. Groat, J.C. Lashley, Journal of Physics: Condensed Matter 23 (2011).","ista":"Salje EKH, Safarik DJ, Taylor RD, Pasternak MP, Modic KA, Groat LA, Lashley JC. 2011. Determination of iron sites and the amount of amorphization in radiation-damaged titanite (CaSiTiO5). Journal of Physics: Condensed Matter. 23(10), 105402.","mla":"Salje, E. K. H., et al. “Determination of Iron Sites and the Amount of Amorphization in Radiation-Damaged Titanite (CaSiTiO5).” <i>Journal of Physics: Condensed Matter</i>, vol. 23, no. 10, 105402, IOP Publishing, 2011, doi:<a href=\"https://doi.org/10.1088/0953-8984/23/10/105402\">10.1088/0953-8984/23/10/105402</a>."},"title":"Determination of iron sites and the amount of amorphization in radiation-damaged titanite (CaSiTiO5)","volume":23,"date_created":"2019-11-19T13:39:30Z","_id":"7076","extern":"1","publisher":"IOP Publishing","abstract":[{"lang":"eng","text":"Iron is a ubiquitous impurity in metamict (radiation-damaged and partially amorphized) materials such as titanite (CaSiTiO5). Using 57Fe Mössbauer spectroscopy we find that iron in metamict titanite is partitioned between amorphous and crystalline regions based on valence. Trivalent iron exists in the crystalline titanite matrix whereas divalent iron exists almost exclusively in radiation-amorphized regions. We find that the relative abundances of the oxidation states correlate with the volume fraction of amorphous and crystalline regions. Our data also show that oxidation of iron proceeds along with the recrystallization of the amorphized regions. Recrystallization is confirmed to occur over the range 700 °C < T < 925 °C, and no further structural changes are observed at higher temperatures. It is surprising that our Mössbauer measurements show divalent iron to be surrounded by titanite with a high degree of short-range structural order in the amorphized regions. This observation is fundamentally different from other metamict materials such as zircon (ZrSiO4), where amorphized regions show no short-range order."}],"article_type":"original","status":"public","month":"02","publication":"Journal of Physics: Condensed Matter","article_number":"105402","publication_status":"published","issue":"10","quality_controlled":"1","intvolume":"        23"},{"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"short":"J. Capps, B. Ma, T. Drye, C. Nucklos, S. Lindsey, D. Rhodes, Q. Zhang, K.A. Modic, S. Cawthorne, F. Drymiotis, Journal of Alloys and Compounds 509 (2011) 1544–1549.","ista":"Capps J, Ma B, Drye T, Nucklos C, Lindsey S, Rhodes D, Zhang Q, Modic KA, Cawthorne S, Drymiotis F. 2011. The effect of Ag concentration on the structural, electrical and thermal transport behavior of Pb:Te:Ag:Se mixtures and improvement of thermoelectric performance via Cu doping. Journal of Alloys and Compounds. 509(5), 1544–1549.","mla":"Capps, J., et al. “The Effect of Ag Concentration on the Structural, Electrical and Thermal Transport Behavior of Pb:Te:Ag:Se Mixtures and Improvement of Thermoelectric Performance via Cu Doping.” <i>Journal of Alloys and Compounds</i>, vol. 509, no. 5, Elsevier, 2011, pp. 1544–49, doi:<a href=\"https://doi.org/10.1016/j.jallcom.2010.10.187\">10.1016/j.jallcom.2010.10.187</a>.","apa":"Capps, J., Ma, B., Drye, T., Nucklos, C., Lindsey, S., Rhodes, D., … Drymiotis, F. (2011). The effect of Ag concentration on the structural, electrical and thermal transport behavior of Pb:Te:Ag:Se mixtures and improvement of thermoelectric performance via Cu doping. <i>Journal of Alloys and Compounds</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jallcom.2010.10.187\">https://doi.org/10.1016/j.jallcom.2010.10.187</a>","ama":"Capps J, Ma B, Drye T, et al. The effect of Ag concentration on the structural, electrical and thermal transport behavior of Pb:Te:Ag:Se mixtures and improvement of thermoelectric performance via Cu doping. <i>Journal of Alloys and Compounds</i>. 2011;509(5):1544-1549. doi:<a href=\"https://doi.org/10.1016/j.jallcom.2010.10.187\">10.1016/j.jallcom.2010.10.187</a>","chicago":"Capps, J., B. Ma, T. Drye, C. Nucklos, S. Lindsey, D. Rhodes, Q. Zhang, Kimberly A Modic, S. Cawthorne, and F. Drymiotis. “The Effect of Ag Concentration on the Structural, Electrical and Thermal Transport Behavior of Pb:Te:Ag:Se Mixtures and Improvement of Thermoelectric Performance via Cu Doping.” <i>Journal of Alloys and Compounds</i>. Elsevier, 2011. <a href=\"https://doi.org/10.1016/j.jallcom.2010.10.187\">https://doi.org/10.1016/j.jallcom.2010.10.187</a>.","ieee":"J. Capps <i>et al.</i>, “The effect of Ag concentration on the structural, electrical and thermal transport behavior of Pb:Te:Ag:Se mixtures and improvement of thermoelectric performance via Cu doping,” <i>Journal of Alloys and Compounds</i>, vol. 509, no. 5. Elsevier, pp. 1544–1549, 2011."},"title":"The effect of Ag concentration on the structural, electrical and thermal transport behavior of Pb:Te:Ag:Se mixtures and improvement of thermoelectric performance via Cu doping","volume":509,"author":[{"first_name":"J.","last_name":"Capps","full_name":"Capps, J."},{"first_name":"B.","full_name":"Ma, B.","last_name":"Ma"},{"first_name":"T.","last_name":"Drye","full_name":"Drye, T."},{"first_name":"C.","full_name":"Nucklos, C.","last_name":"Nucklos"},{"first_name":"S.","last_name":"Lindsey","full_name":"Lindsey, S."},{"first_name":"D.","last_name":"Rhodes","full_name":"Rhodes, D."},{"first_name":"Q.","full_name":"Zhang, Q.","last_name":"Zhang"},{"id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","first_name":"Kimberly A","full_name":"Modic, Kimberly A","last_name":"Modic","orcid":"0000-0001-9760-3147"},{"full_name":"Cawthorne, S.","last_name":"Cawthorne","first_name":"S."},{"first_name":"F.","last_name":"Drymiotis","full_name":"Drymiotis, F."}],"day":"03","date_updated":"2021-01-12T08:11:44Z","type":"journal_article","year":"2011","publication_identifier":{"issn":["0925-8388"]},"doi":"10.1016/j.jallcom.2010.10.187","language":[{"iso":"eng"}],"date_published":"2011-02-03T00:00:00Z","oa_version":"None","status":"public","publication":"Journal of Alloys and Compounds","month":"02","publication_status":"published","issue":"5","quality_controlled":"1","intvolume":"       509","date_created":"2019-11-19T13:45:37Z","page":"1544-1549","_id":"7077","extern":"1","publisher":"Elsevier","abstract":[{"lang":"eng","text":"Pb, Te, Ag and Se, when reacted in a 1:1:x:1 (x = 1.9, 2.0, 2.01) molar ratio, form a two phase composite which consists of a phase which crystallizes in the fcc cubic PbSe structure and a phase that crystallizes in the Ag2Te structure. In this article, we demonstrate that by varying the Ag concentration, we can manipulate which variant of the Ag2Te structure stabilizes at room temperature (monoclinic α-Ag2Te or cubic β-Ag1.9Te) and can consequently manipulate the electrical and thermal transport behavior of the composite and hence the thermoelectric performance. Additionally, we show that Cu-doping results in an overall improvement in thermoelectric performance. Our results suggest that formation of composites is a viable path for achieving a phonon-glass-electron-crystal (PGEC) alloy."}],"article_type":"original"},{"oa_version":"None","language":[{"iso":"eng"}],"date_published":"2011-12-15T00:00:00Z","author":[{"last_name":"Bruce","full_name":"Bruce, Peter G.","first_name":"Peter G."},{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","first_name":"Stefan Alexander","full_name":"Freunberger, Stefan Alexander","orcid":"0000-0003-2902-5319","last_name":"Freunberger"},{"last_name":"Hardwick","full_name":"Hardwick, Laurence J.","first_name":"Laurence J."},{"last_name":"Tarascon","full_name":"Tarascon, Jean-Marie","first_name":"Jean-Marie"}],"date_updated":"2021-01-12T08:12:59Z","day":"15","doi":"10.1038/nmat3191","type":"journal_article","publication_identifier":{"issn":["1476-1122","1476-4660"]},"year":"2011","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1038/nmat3237"}]},"title":"Li–O2 and Li–S batteries with high energy storage","citation":{"short":"P.G. Bruce, S.A. Freunberger, L.J. Hardwick, J.-M. Tarascon, Nature Materials 11 (2011) 19–29.","ista":"Bruce PG, Freunberger SA, Hardwick LJ, Tarascon J-M. 2011. Li–O2 and Li–S batteries with high energy storage. Nature Materials. 11(1), 19–29.","mla":"Bruce, Peter G., et al. “Li–O2 and Li–S Batteries with High Energy Storage.” <i>Nature Materials</i>, vol. 11, no. 1, Springer Nature, 2011, pp. 19–29, doi:<a href=\"https://doi.org/10.1038/nmat3191\">10.1038/nmat3191</a>.","chicago":"Bruce, Peter G., Stefan Alexander Freunberger, Laurence J. Hardwick, and Jean-Marie Tarascon. “Li–O2 and Li–S Batteries with High Energy Storage.” <i>Nature Materials</i>. Springer Nature, 2011. <a href=\"https://doi.org/10.1038/nmat3191\">https://doi.org/10.1038/nmat3191</a>.","apa":"Bruce, P. G., Freunberger, S. A., Hardwick, L. J., &#38; Tarascon, J.-M. (2011). Li–O2 and Li–S batteries with high energy storage. <i>Nature Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nmat3191\">https://doi.org/10.1038/nmat3191</a>","ieee":"P. G. Bruce, S. A. Freunberger, L. J. Hardwick, and J.-M. Tarascon, “Li–O2 and Li–S batteries with high energy storage,” <i>Nature Materials</i>, vol. 11, no. 1. Springer Nature, pp. 19–29, 2011.","ama":"Bruce PG, Freunberger SA, Hardwick LJ, Tarascon J-M. Li–O2 and Li–S batteries with high energy storage. <i>Nature Materials</i>. 2011;11(1):19-29. doi:<a href=\"https://doi.org/10.1038/nmat3191\">10.1038/nmat3191</a>"},"volume":11,"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Springer Nature","extern":"1","article_type":"original","abstract":[{"text":"Li-ion batteries have transformed portable electronics and will play a key role in the electrification of transport. However, the highest energy storage possible for Li-ion batteries is insufficient for the long-term needs of society, for example, extended-range electric vehicles. To go beyond the horizon of Li-ion batteries is a formidable challenge; there are few options. Here we consider two: Li–air (O2) and Li–S. The energy that can be stored in Li–air (based on aqueous or non-aqueous electrolytes) and Li–S cells is compared with Li-ion; the operation of the cells is discussed, as are the significant hurdles that will have to be overcome if such batteries are to succeed. Fundamental scientific advances in understanding the reactions occurring in the cells as well as new materials are key to overcoming these obstacles. The potential benefits of Li–air and Li–S justify the continued research effort that will be needed.","lang":"eng"}],"_id":"7313","page":"19-29","date_created":"2020-01-15T12:20:01Z","intvolume":"        11","quality_controlled":"1","publication":"Nature Materials","month":"12","status":"public","issue":"1","publication_status":"published"},{"type":"journal_article","year":"2011","publication_identifier":{"issn":["1433-7851"]},"doi":"10.1002/anie.201102357","author":[{"first_name":"Stefan Alexander","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","last_name":"Freunberger","orcid":"0000-0003-2902-5319","full_name":"Freunberger, Stefan Alexander"},{"full_name":"Chen, Yuhui","last_name":"Chen","first_name":"Yuhui"},{"first_name":"Nicholas E.","last_name":"Drewett","full_name":"Drewett, Nicholas E."},{"last_name":"Hardwick","full_name":"Hardwick, Laurence J.","first_name":"Laurence J."},{"first_name":"Fanny","full_name":"Bardé, Fanny","last_name":"Bardé"},{"first_name":"Peter G.","full_name":"Bruce, Peter G.","last_name":"Bruce"}],"date_updated":"2021-01-12T08:12:59Z","day":"05","date_published":"2011-09-05T00:00:00Z","language":[{"iso":"eng"}],"oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","volume":50,"citation":{"short":"S.A. Freunberger, Y. Chen, N.E. Drewett, L.J. Hardwick, F. Bardé, P.G. Bruce, Angewandte Chemie International Edition 50 (2011) 8609–8613.","ista":"Freunberger SA, Chen Y, Drewett NE, Hardwick LJ, Bardé F, Bruce PG. 2011. The Lithium-Oxygen battery with ether-based electrolytes. Angewandte Chemie International Edition. 50(37), 8609–8613.","mla":"Freunberger, Stefan Alexander, et al. “The Lithium-Oxygen Battery with Ether-Based Electrolytes.” <i>Angewandte Chemie International Edition</i>, vol. 50, no. 37, Wiley, 2011, pp. 8609–13, doi:<a href=\"https://doi.org/10.1002/anie.201102357\">10.1002/anie.201102357</a>.","chicago":"Freunberger, Stefan Alexander, Yuhui Chen, Nicholas E. Drewett, Laurence J. Hardwick, Fanny Bardé, and Peter G. Bruce. “The Lithium-Oxygen Battery with Ether-Based Electrolytes.” <i>Angewandte Chemie International Edition</i>. Wiley, 2011. <a href=\"https://doi.org/10.1002/anie.201102357\">https://doi.org/10.1002/anie.201102357</a>.","ieee":"S. A. Freunberger, Y. Chen, N. E. Drewett, L. J. Hardwick, F. Bardé, and P. G. Bruce, “The Lithium-Oxygen battery with ether-based electrolytes,” <i>Angewandte Chemie International Edition</i>, vol. 50, no. 37. Wiley, pp. 8609–8613, 2011.","apa":"Freunberger, S. A., Chen, Y., Drewett, N. E., Hardwick, L. J., Bardé, F., &#38; Bruce, P. G. (2011). The Lithium-Oxygen battery with ether-based electrolytes. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.201102357\">https://doi.org/10.1002/anie.201102357</a>","ama":"Freunberger SA, Chen Y, Drewett NE, Hardwick LJ, Bardé F, Bruce PG. The Lithium-Oxygen battery with ether-based electrolytes. <i>Angewandte Chemie International Edition</i>. 2011;50(37):8609-8613. doi:<a href=\"https://doi.org/10.1002/anie.201102357\">10.1002/anie.201102357</a>"},"title":"The Lithium-Oxygen battery with ether-based electrolytes","date_created":"2020-01-15T12:20:19Z","page":"8609-8613","_id":"7314","abstract":[{"lang":"eng","text":"The electrolyte is one of the greatest challenges facing the development of the non‐aqueous Li–O2 battery. Although ether‐based electrolytes do from Li2O2 on the first discharge, it is shown by various techniques that they also decompose and that decomposition increases while Li2O2 decreases on cycling (see picture). Thus, these electrolytes are not suitable. "}],"article_type":"original","publisher":"Wiley","extern":"1","publication_status":"published","issue":"37","status":"public","month":"09","publication":"Angewandte Chemie International Edition","quality_controlled":"1","intvolume":"        50"},{"article_type":"original","abstract":[{"text":"Spectroscopic data (see picture) provide direct evidence that in non‐aqueous Li+ electrolyte, O2 is reduced to O2−, which then forms LiO2 on the electrode surface which disproportionates to Li2O2. On charging, Li2O2 decomposes directly, in a one‐step reaction to evolve O2 and does not pass through LiO2 as an intermediate. ","lang":"eng"}],"publisher":"Wiley","extern":"1","_id":"7315","date_created":"2020-01-15T12:20:31Z","page":"6351-6355","intvolume":"        50","issue":"28","publication_status":"published","publication":"Angewandte Chemie International Edition","month":"07","status":"public","oa_version":"None","language":[{"iso":"eng"}],"date_published":"2011-07-04T00:00:00Z","doi":"10.1002/anie.201100879","publication_identifier":{"issn":["1433-7851"]},"year":"2011","type":"journal_article","author":[{"last_name":"Peng","full_name":"Peng, Zhangquan","first_name":"Zhangquan"},{"full_name":"Freunberger, Stefan Alexander","orcid":"0000-0003-2902-5319","last_name":"Freunberger","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","first_name":"Stefan Alexander"},{"full_name":"Hardwick, Laurence J.","last_name":"Hardwick","first_name":"Laurence J."},{"full_name":"Chen, Yuhui","last_name":"Chen","first_name":"Yuhui"},{"last_name":"Giordani","full_name":"Giordani, Vincent","first_name":"Vincent"},{"first_name":"Fanny","full_name":"Bardé, Fanny","last_name":"Bardé"},{"first_name":"Petr","full_name":"Novák, Petr","last_name":"Novák"},{"first_name":"Duncan","last_name":"Graham","full_name":"Graham, Duncan"},{"first_name":"Jean-Marie","last_name":"Tarascon","full_name":"Tarascon, Jean-Marie"},{"first_name":"Peter G.","last_name":"Bruce","full_name":"Bruce, Peter G."}],"date_updated":"2021-01-12T08:12:59Z","day":"04","volume":50,"title":"Oxygen reactions in a non-aqueous Li+ electrolyte","citation":{"chicago":"Peng, Zhangquan, Stefan Alexander Freunberger, Laurence J. Hardwick, Yuhui Chen, Vincent Giordani, Fanny Bardé, Petr Novák, Duncan Graham, Jean-Marie Tarascon, and Peter G. Bruce. “Oxygen Reactions in a Non-Aqueous Li+ Electrolyte.” <i>Angewandte Chemie International Edition</i>. Wiley, 2011. <a href=\"https://doi.org/10.1002/anie.201100879\">https://doi.org/10.1002/anie.201100879</a>.","ieee":"Z. Peng <i>et al.</i>, “Oxygen reactions in a non-aqueous Li+ electrolyte,” <i>Angewandte Chemie International Edition</i>, vol. 50, no. 28. Wiley, pp. 6351–6355, 2011.","apa":"Peng, Z., Freunberger, S. A., Hardwick, L. J., Chen, Y., Giordani, V., Bardé, F., … Bruce, P. G. (2011). Oxygen reactions in a non-aqueous Li+ electrolyte. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.201100879\">https://doi.org/10.1002/anie.201100879</a>","ama":"Peng Z, Freunberger SA, Hardwick LJ, et al. Oxygen reactions in a non-aqueous Li+ electrolyte. <i>Angewandte Chemie International Edition</i>. 2011;50(28):6351-6355. doi:<a href=\"https://doi.org/10.1002/anie.201100879\">10.1002/anie.201100879</a>","ista":"Peng Z, Freunberger SA, Hardwick LJ, Chen Y, Giordani V, Bardé F, Novák P, Graham D, Tarascon J-M, Bruce PG. 2011. Oxygen reactions in a non-aqueous Li+ electrolyte. Angewandte Chemie International Edition. 50(28), 6351–6355.","mla":"Peng, Zhangquan, et al. “Oxygen Reactions in a Non-Aqueous Li+ Electrolyte.” <i>Angewandte Chemie International Edition</i>, vol. 50, no. 28, Wiley, 2011, pp. 6351–55, doi:<a href=\"https://doi.org/10.1002/anie.201100879\">10.1002/anie.201100879</a>.","short":"Z. Peng, S.A. Freunberger, L.J. Hardwick, Y. Chen, V. Giordani, F. Bardé, P. Novák, D. Graham, J.-M. Tarascon, P.G. Bruce, Angewandte Chemie International Edition 50 (2011) 6351–6355."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No"},{"year":"2011","type":"journal_article","publication_identifier":{"issn":["0002-7863","1520-5126"]},"doi":"10.1021/ja2021747","author":[{"id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","first_name":"Stefan Alexander","full_name":"Freunberger, Stefan Alexander","orcid":"0000-0003-2902-5319","last_name":"Freunberger"},{"last_name":"Chen","full_name":"Chen, Yuhui","first_name":"Yuhui"},{"first_name":"Zhangquan","last_name":"Peng","full_name":"Peng, Zhangquan"},{"first_name":"John M.","full_name":"Griffin, John M.","last_name":"Griffin"},{"last_name":"Hardwick","full_name":"Hardwick, Laurence J.","first_name":"Laurence J."},{"first_name":"Fanny","last_name":"Bardé","full_name":"Bardé, Fanny"},{"last_name":"Novák","full_name":"Novák, Petr","first_name":"Petr"},{"full_name":"Bruce, Peter G.","last_name":"Bruce","first_name":"Peter G."}],"day":"27","date_updated":"2021-01-12T08:13:00Z","date_published":"2011-04-27T00:00:00Z","language":[{"iso":"eng"}],"oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","volume":133,"citation":{"chicago":"Freunberger, Stefan Alexander, Yuhui Chen, Zhangquan Peng, John M. Griffin, Laurence J. Hardwick, Fanny Bardé, Petr Novák, and Peter G. Bruce. “Reactions in the Rechargeable Lithium–O2 Battery with Alkyl Carbonate Electrolytes.” <i>Journal of the American Chemical Society</i>. ACS, 2011. <a href=\"https://doi.org/10.1021/ja2021747\">https://doi.org/10.1021/ja2021747</a>.","ama":"Freunberger SA, Chen Y, Peng Z, et al. Reactions in the rechargeable Lithium–O2 battery with alkyl carbonate electrolytes. <i>Journal of the American Chemical Society</i>. 2011;133(20):8040-8047. doi:<a href=\"https://doi.org/10.1021/ja2021747\">10.1021/ja2021747</a>","apa":"Freunberger, S. A., Chen, Y., Peng, Z., Griffin, J. M., Hardwick, L. J., Bardé, F., … Bruce, P. G. (2011). Reactions in the rechargeable Lithium–O2 battery with alkyl carbonate electrolytes. <i>Journal of the American Chemical Society</i>. ACS. <a href=\"https://doi.org/10.1021/ja2021747\">https://doi.org/10.1021/ja2021747</a>","ieee":"S. A. Freunberger <i>et al.</i>, “Reactions in the rechargeable Lithium–O2 battery with alkyl carbonate electrolytes,” <i>Journal of the American Chemical Society</i>, vol. 133, no. 20. ACS, pp. 8040–8047, 2011.","short":"S.A. Freunberger, Y. Chen, Z. Peng, J.M. Griffin, L.J. Hardwick, F. Bardé, P. Novák, P.G. Bruce, Journal of the American Chemical Society 133 (2011) 8040–8047.","mla":"Freunberger, Stefan Alexander, et al. “Reactions in the Rechargeable Lithium–O2 Battery with Alkyl Carbonate Electrolytes.” <i>Journal of the American Chemical Society</i>, vol. 133, no. 20, ACS, 2011, pp. 8040–47, doi:<a href=\"https://doi.org/10.1021/ja2021747\">10.1021/ja2021747</a>.","ista":"Freunberger SA, Chen Y, Peng Z, Griffin JM, Hardwick LJ, Bardé F, Novák P, Bruce PG. 2011. Reactions in the rechargeable Lithium–O2 battery with alkyl carbonate electrolytes. Journal of the American Chemical Society. 133(20), 8040–8047."},"title":"Reactions in the rechargeable Lithium–O2 battery with alkyl carbonate electrolytes","page":"8040-8047","date_created":"2020-01-15T12:20:43Z","_id":"7316","article_type":"original","abstract":[{"text":"The nonaqueous rechargeable lithium–O2 battery containing an alkyl carbonate electrolyte discharges by formation of C3H6(OCO2Li)2, Li2CO3, HCO2Li, CH3CO2Li, CO2, and H2O at the cathode, due to electrolyte decomposition. Charging involves oxidation of C3H6(OCO2Li)2, Li2CO3, HCO2Li, CH3CO2Li accompanied by CO2 and H2O evolution. Mechanisms are proposed for the reactions on discharge and charge. The different pathways for discharge and charge are consistent with the widely observed voltage gap in Li–O2 cells. Oxidation of C3H6(OCO2Li)2 involves terminal carbonate groups leaving behind the OC3H6O moiety that reacts to form a thick gel on the Li anode. Li2CO3, HCO2Li, CH3CO2Li, and C3H6(OCO2Li)2 accumulate in the cathode on cycling correlating with capacity fading and cell failure. The latter is compounded by continuous consumption of the electrolyte on each discharge.","lang":"eng"}],"extern":"1","publisher":"ACS","publication_status":"published","issue":"20","status":"public","publication":"Journal of the American Chemical Society","month":"04","quality_controlled":"1","intvolume":"       133"},{"publisher":"The Electrochemical Society","extern":"1","abstract":[{"text":"Lithium-metal oxides with a high formal Li2O content, such as Li5FeO4 (5Li2O•Fe2O3) and a Li2MnO3•LiFeO2 composite ({Li2O•MnO2}•{Li2O•Fe2O3}) have been explored as electrocatalysts for primary and rechargeable Li-O2 cells. Activation occurs predominantly by Li2O removal, either electrochemically or chemically by acid-treatment. Superior electrochemical behavior is obtained if activation occurs by acid-treatment; Li2MnO3•LiFeO2 catalysts provide 2516 mAh/g (carbon) corresponding to 931 mAh/g (electrocatalyst + carbon) during the initial discharge. The reaction is reasonably reversible during the early cycles. The approach has implications for designing electrocatalysts that participate through electrochemical Li2O extraction/reformation reactions, offering exceptionally high capacities.","lang":"eng"}],"article_type":"original","_id":"7317","date_created":"2020-01-15T12:20:54Z","intvolume":"        14","quality_controlled":"1","month":"03","publication":"Electrochemical and Solid-State Letters","status":"public","issue":"5","publication_status":"published","article_number":"A64","oa_version":"None","date_published":"2011-03-02T00:00:00Z","language":[{"iso":"eng"}],"day":"02","author":[{"full_name":"Trahey, L.","last_name":"Trahey","first_name":"L."},{"first_name":"C. S.","last_name":"Johnson","full_name":"Johnson, C. S."},{"first_name":"J. T.","full_name":"Vaughey, J. T.","last_name":"Vaughey"},{"first_name":"S.-H.","last_name":"Kang","full_name":"Kang, S.-H."},{"full_name":"Hardwick, L. J.","last_name":"Hardwick","first_name":"L. J."},{"full_name":"Freunberger, Stefan Alexander","last_name":"Freunberger","orcid":"0000-0003-2902-5319","id":"A8CA28E6-CE23-11E9-AD2D-EC27E6697425","first_name":"Stefan Alexander"},{"first_name":"P. G.","full_name":"Bruce, P. G.","last_name":"Bruce"},{"first_name":"M. M.","last_name":"Thackeray","full_name":"Thackeray, M. M."}],"date_updated":"2021-01-12T08:13:00Z","doi":"10.1149/1.3555366","type":"journal_article","year":"2011","publication_identifier":{"issn":["1099-0062"]},"title":"Activated Lithium-Metal-Oxides as catalytic electrodes for Li–O2 cells","citation":{"ama":"Trahey L, Johnson CS, Vaughey JT, et al. Activated Lithium-Metal-Oxides as catalytic electrodes for Li–O2 cells. <i>Electrochemical and Solid-State Letters</i>. 2011;14(5). doi:<a href=\"https://doi.org/10.1149/1.3555366\">10.1149/1.3555366</a>","chicago":"Trahey, L., C. S. Johnson, J. T. Vaughey, S.-H. Kang, L. J. Hardwick, Stefan Alexander Freunberger, P. G. Bruce, and M. M. Thackeray. “Activated Lithium-Metal-Oxides as Catalytic Electrodes for Li–O2 Cells.” <i>Electrochemical and Solid-State Letters</i>. The Electrochemical Society, 2011. <a href=\"https://doi.org/10.1149/1.3555366\">https://doi.org/10.1149/1.3555366</a>.","apa":"Trahey, L., Johnson, C. S., Vaughey, J. T., Kang, S.-H., Hardwick, L. J., Freunberger, S. A., … Thackeray, M. M. (2011). Activated Lithium-Metal-Oxides as catalytic electrodes for Li–O2 cells. <i>Electrochemical and Solid-State Letters</i>. The Electrochemical Society. <a href=\"https://doi.org/10.1149/1.3555366\">https://doi.org/10.1149/1.3555366</a>","ieee":"L. Trahey <i>et al.</i>, “Activated Lithium-Metal-Oxides as catalytic electrodes for Li–O2 cells,” <i>Electrochemical and Solid-State Letters</i>, vol. 14, no. 5. The Electrochemical Society, 2011.","mla":"Trahey, L., et al. “Activated Lithium-Metal-Oxides as Catalytic Electrodes for Li–O2 Cells.” <i>Electrochemical and Solid-State Letters</i>, vol. 14, no. 5, A64, The Electrochemical Society, 2011, doi:<a href=\"https://doi.org/10.1149/1.3555366\">10.1149/1.3555366</a>.","ista":"Trahey L, Johnson CS, Vaughey JT, Kang S-H, Hardwick LJ, Freunberger SA, Bruce PG, Thackeray MM. 2011. Activated Lithium-Metal-Oxides as catalytic electrodes for Li–O2 cells. Electrochemical and Solid-State Letters. 14(5), A64.","short":"L. Trahey, C.S. Johnson, J.T. Vaughey, S.-H. Kang, L.J. Hardwick, S.A. Freunberger, P.G. Bruce, M.M. Thackeray, Electrochemical and Solid-State Letters 14 (2011)."},"volume":14,"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"publication_status":"published","oa":1,"status":"public","month":"06","publication":"2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro","quality_controlled":"1","keyword":["image segmentation","biomedical imaging","three dimensional displays","neurons","retina","observers","image color analysis"],"date_created":"2021-08-19T11:49:58Z","_id":"9943","abstract":[{"lang":"eng","text":"Segmentation is the process of partitioning digital images into meaningful regions. The analysis of biological high content images often requires segmentation as a first step. We propose ilastik as an easy-to-use tool which allows the user without expertise in image processing to perform segmentation and classification in a unified way. ilastik learns from labels provided by the user through a convenient mouse interface. Based on these labels, ilastik infers a problem specific segmentation. A random forest classifier is used in the learning step, in which each pixel's neighborhood is characterized by a set of generic (nonlinear) features. ilastik supports up to three spatial plus one spectral dimension and makes use of all dimensions in the feature calculation. ilastik provides realtime feedback that enables the user to interactively refine the segmentation result and hence further fine-tune the classifier. An uncertainty measure guides the user to ambiguous regions in the images. Real time performance is achieved by multi-threading which fully exploits the capabilities of modern multi-core machines. Once a classifier has been trained on a set of representative images, it can be exported and used to automatically process a very large number of images (e.g. using the CellProfiler pipeline). ilastik is an open source project and released under the BSD license at www.ilastik.org."}],"publisher":"Institute of Electrical and Electronics Engineers","extern":"1","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","conference":{"name":"ISBI: International Symposium on Biomedical Imaging","end_date":"2011-04-02","location":"Chicago, Illinois, USA","start_date":"2011-03-30"},"article_processing_charge":"No","main_file_link":[{"url":"https://www.researchgate.net/publication/224241106_Ilastik_Interactive_learning_and_segmentation_toolkit","open_access":"1"}],"citation":{"ieee":"C. M. Sommer, C. Straehle, U. Köthe, and F. A. Hamprecht, “Ilastik: Interactive learning and segmentation toolkit,” in <i>2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro</i>, Chicago, Illinois, USA, 2011.","apa":"Sommer, C. M., Straehle, C., Köthe, U., &#38; Hamprecht, F. A. (2011). Ilastik: Interactive learning and segmentation toolkit. In <i>2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro</i>. Chicago, Illinois, USA: Institute of Electrical and Electronics Engineers. <a href=\"https://doi.org/10.1109/isbi.2011.5872394\">https://doi.org/10.1109/isbi.2011.5872394</a>","ama":"Sommer CM, Straehle C, Köthe U, Hamprecht FA. Ilastik: Interactive learning and segmentation toolkit. In: <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro</i>. Institute of Electrical and Electronics Engineers; 2011. doi:<a href=\"https://doi.org/10.1109/isbi.2011.5872394\">10.1109/isbi.2011.5872394</a>","chicago":"Sommer, Christoph M, Christoph Straehle, Ullrich Köthe, and Fred A. Hamprecht. “Ilastik: Interactive Learning and Segmentation Toolkit.” In <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro</i>. Institute of Electrical and Electronics Engineers, 2011. <a href=\"https://doi.org/10.1109/isbi.2011.5872394\">https://doi.org/10.1109/isbi.2011.5872394</a>.","short":"C.M. Sommer, C. Straehle, U. Köthe, F.A. Hamprecht, in:, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro, Institute of Electrical and Electronics Engineers, 2011.","mla":"Sommer, Christoph M., et al. “Ilastik: Interactive Learning and Segmentation Toolkit.” <i>2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro</i>, Institute of Electrical and Electronics Engineers, 2011, doi:<a href=\"https://doi.org/10.1109/isbi.2011.5872394\">10.1109/isbi.2011.5872394</a>.","ista":"Sommer CM, Straehle C, Köthe U, Hamprecht FA. 2011. Ilastik: Interactive learning and segmentation toolkit. 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro. ISBI: International Symposium on Biomedical Imaging."},"title":"Ilastik: Interactive learning and segmentation toolkit","year":"2011","type":"conference","publication_identifier":{"isbn":["978-1-4244-4127-3"],"issn":["1945-7928"],"eissn":["1945-8452"]},"doi":"10.1109/isbi.2011.5872394","author":[{"orcid":"0000-0003-1216-9105","last_name":"Sommer","full_name":"Sommer, Christoph M","first_name":"Christoph M","id":"4DF26D8C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Straehle, Christoph","last_name":"Straehle","first_name":"Christoph"},{"last_name":"Köthe","full_name":"Köthe, Ullrich","first_name":"Ullrich"},{"full_name":"Hamprecht, Fred A.","last_name":"Hamprecht","first_name":"Fred A."}],"day":"09","date_updated":"2023-02-23T14:13:38Z","department":[{"_id":"Bio"}],"language":[{"iso":"eng"}],"date_published":"2011-06-09T00:00:00Z","oa_version":"Preprint"},{"publication_status":"published","issue":"10","status":"public","publication":"Development","month":"05","quality_controlled":0,"intvolume":"       138","date_created":"2018-12-11T12:01:17Z","page":"2069 - 2078","publist_id":"3615","_id":"3086","abstract":[{"text":"PIN-FORMED (PIN)-dependent auxin transport is essential for plant development and its modulation in response to the environment or endogenous signals. A NON-PHOTOTROPIC HYPOCOTYL 3 (NPH3)-like protein, MACCHI-BOU 4 (MAB4), has been shown to control PIN1 localization during organ formation, but its contribution is limited. The Arabidopsis genome contains four genes, MAB4/ENP/NPY1-LIKE1 (MEL1), MEL2, MEL3 and MEL4, highly homologous to MAB4. Genetic analysis disclosed functional redundancy between MAB4 and MEL genes in regulation of not only organ formation but also of root gravitropism, revealing that NPH3 family proteins have a wider range of functions than previously suspected. Multiple mutants showed severe reduction in PIN abundance and PIN polar localization, leading to defective expression of an auxin responsive marker DR5rev::GFP. Pharmacological analyses and fluorescence recovery after photo-bleaching experiments showed that mel mutations increase PIN2 internalization from the plasma membrane, but affect neither intracellular PIN2 trafficking nor PIN2 lateral diffusion at the plasma membrane. Notably, all MAB4 subfamily proteins show polar localization at the cell periphery in plants. The MAB4 polarity was almost identical to PIN polarity. Our results suggest that the MAB4 subfamily proteins specifically retain PIN proteins in a polarized manner at the plasma membrane, thus controlling directional auxin transport and plant development.","lang":"eng"}],"extern":1,"publisher":"Company of Biologists","volume":138,"citation":{"ama":"Furutani M, Sakamoto N, Yoshida S, et al. Polar localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers. <i>Development</i>. 2011;138(10):2069-2078. doi:<a href=\"https://doi.org/10.1242/dev.057745\">10.1242/dev.057745</a>","chicago":"Furutani, Masahiko, Norihito Sakamoto, Shuhei Yoshida, Takahito Kajiwara, Hélène Robert, Jiří Friml, and Masao Tasaka. “Polar Localized NPH3-like Proteins Regulate Polarity and Endocytosis of PIN-FORMED Auxin Efflux Carriers.” <i>Development</i>. Company of Biologists, 2011. <a href=\"https://doi.org/10.1242/dev.057745\">https://doi.org/10.1242/dev.057745</a>.","apa":"Furutani, M., Sakamoto, N., Yoshida, S., Kajiwara, T., Robert, H., Friml, J., &#38; Tasaka, M. (2011). Polar localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers. <i>Development</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/dev.057745\">https://doi.org/10.1242/dev.057745</a>","ieee":"M. Furutani <i>et al.</i>, “Polar localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers,” <i>Development</i>, vol. 138, no. 10. Company of Biologists, pp. 2069–2078, 2011.","mla":"Furutani, Masahiko, et al. “Polar Localized NPH3-like Proteins Regulate Polarity and Endocytosis of PIN-FORMED Auxin Efflux Carriers.” <i>Development</i>, vol. 138, no. 10, Company of Biologists, 2011, pp. 2069–78, doi:<a href=\"https://doi.org/10.1242/dev.057745\">10.1242/dev.057745</a>.","ista":"Furutani M, Sakamoto N, Yoshida S, Kajiwara T, Robert H, Friml J, Tasaka M. 2011. Polar localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers. Development. 138(10), 2069–2078.","short":"M. Furutani, N. Sakamoto, S. Yoshida, T. Kajiwara, H. Robert, J. Friml, M. Tasaka, Development 138 (2011) 2069–2078."},"title":"Polar localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers","year":"2011","type":"journal_article","doi":"10.1242/dev.057745","day":"01","author":[{"first_name":"Masahiko","full_name":"Furutani, Masahiko","last_name":"Furutani"},{"first_name":"Norihito","last_name":"Sakamoto","full_name":"Sakamoto, Norihito"},{"first_name":"Shuhei","full_name":"Yoshida, Shuhei","last_name":"Yoshida"},{"first_name":"Takahito","last_name":"Kajiwara","full_name":"Kajiwara, Takahito"},{"first_name":"Hélène","full_name":"Robert, Hélène S","last_name":"Robert"},{"first_name":"Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml","full_name":"Jirí Friml"},{"full_name":"Tasaka, Masao","last_name":"Tasaka","first_name":"Masao"}],"date_updated":"2021-01-12T07:40:57Z","date_published":"2011-05-01T00:00:00Z"},{"publication_status":"published","issue":"5","status":"public","publication":"Plant Cell","month":"05","quality_controlled":0,"intvolume":"        23","date_created":"2018-12-11T12:01:18Z","page":"1920 - 1931","_id":"3087","publist_id":"3614","abstract":[{"text":"Endocytosis is a crucial mechanism by which eukaryotic cells internalize extracellular and plasma membrane material, and it is required for a multitude of cellular and developmental processes in unicellular and multicellular organisms. In animals and yeast, the best characterized pathway for endocytosis depends on the function of the vesicle coat protein clathrin. Clathrinmediated endocytosis has recently been demonstrated also in plant cells, but its physiological and developmental roles remain unclear. Here, we assessed the roles of the clathrin-mediated mechanism of endocytosis in plants by genetic means. We interfered with clathrin heavy chain (CHC) function through mutants and dominant-negative approaches in Arabidopsis thaliana and established tools to manipulate clathrin function in a cell type-specific manner. The chc2 single mutants and dominant-negative CHC1 (HUB) transgenic lines were defective in bulk endocytosis as well as in internalization of prominent plasma membrane proteins. Interference with clathrin-mediated endocytosis led to defects in constitutive endocytic recycling of PIN auxin transporters and their polar distribution in embryos and roots. Consistent with this, these lines had altered auxin distribution patterns and associated auxin transport-related phenotypes, such as aberrant embryo patterning, imperfect cotyledon specification, agravitropic growth, and impaired lateral root organogenesis. Together, these data demonstrate a fundamental role for clathrin function in cell polarity, growth, patterning, and organogenesis in plants.","lang":"eng"}],"extern":1,"publisher":"American Society of Plant Biologists","volume":23,"citation":{"short":"S. Kitakura, S. Vanneste, S. Robert, C. Löfke, T. Teichmann, H. Tanaka, J. Friml, Plant Cell 23 (2011) 1920–1931.","ista":"Kitakura S, Vanneste S, Robert S, Löfke C, Teichmann T, Tanaka H, Friml J. 2011. Clathrin mediates endocytosis and polar distribution of PIN auxin transporters in Arabidopsis. Plant Cell. 23(5), 1920–1931.","mla":"Kitakura, Saeko, et al. “Clathrin Mediates Endocytosis and Polar Distribution of PIN Auxin Transporters in Arabidopsis.” <i>Plant Cell</i>, vol. 23, no. 5, American Society of Plant Biologists, 2011, pp. 1920–31, doi:<a href=\"https://doi.org/10.1105/tpc.111.083030\">10.1105/tpc.111.083030</a>.","chicago":"Kitakura, Saeko, Steffen Vanneste, Stéphanie Robert, Christian Löfke, Thomas Teichmann, Hirokazu Tanaka, and Jiří Friml. “Clathrin Mediates Endocytosis and Polar Distribution of PIN Auxin Transporters in Arabidopsis.” <i>Plant Cell</i>. American Society of Plant Biologists, 2011. <a href=\"https://doi.org/10.1105/tpc.111.083030\">https://doi.org/10.1105/tpc.111.083030</a>.","ieee":"S. Kitakura <i>et al.</i>, “Clathrin mediates endocytosis and polar distribution of PIN auxin transporters in Arabidopsis,” <i>Plant Cell</i>, vol. 23, no. 5. American Society of Plant Biologists, pp. 1920–1931, 2011.","apa":"Kitakura, S., Vanneste, S., Robert, S., Löfke, C., Teichmann, T., Tanaka, H., &#38; Friml, J. (2011). Clathrin mediates endocytosis and polar distribution of PIN auxin transporters in Arabidopsis. <i>Plant Cell</i>. American Society of Plant Biologists. <a href=\"https://doi.org/10.1105/tpc.111.083030\">https://doi.org/10.1105/tpc.111.083030</a>","ama":"Kitakura S, Vanneste S, Robert S, et al. Clathrin mediates endocytosis and polar distribution of PIN auxin transporters in Arabidopsis. <i>Plant Cell</i>. 2011;23(5):1920-1931. doi:<a href=\"https://doi.org/10.1105/tpc.111.083030\">10.1105/tpc.111.083030</a>"},"title":"Clathrin mediates endocytosis and polar distribution of PIN auxin transporters in Arabidopsis","type":"journal_article","year":"2011","doi":"10.1105/tpc.111.083030","day":"01","author":[{"first_name":"Saeko","last_name":"Kitakura","full_name":"Kitakura, Saeko"},{"first_name":"Steffen","last_name":"Vanneste","full_name":"Vanneste, Steffen"},{"first_name":"Stéphanie","full_name":"Robert, Stéphanie","last_name":"Robert"},{"full_name":"Löfke, Christian","last_name":"Löfke","first_name":"Christian"},{"last_name":"Teichmann","full_name":"Teichmann, Thomas","first_name":"Thomas"},{"first_name":"Hirokazu","full_name":"Tanaka, Hirokazu","last_name":"Tanaka"},{"first_name":"Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","orcid":"0000-0002-8302-7596","full_name":"Jirí Friml"}],"date_updated":"2021-01-12T07:40:57Z","date_published":"2011-05-01T00:00:00Z"},{"date_published":"2011-06-07T00:00:00Z","date_updated":"2021-01-12T07:40:58Z","author":[{"first_name":"Anthony","last_name":"Bishopp","full_name":"Bishopp, Anthony"},{"first_name":"Hanna","full_name":"Help, Hanna","last_name":"Help"},{"full_name":"El-Showk, Sedeer","last_name":"El Showk","first_name":"Sedeer"},{"last_name":"Weijers","full_name":"Weijers, Dolf","first_name":"Dolf"},{"full_name":"Scheres, Ben","last_name":"Scheres","first_name":"Ben"},{"full_name":"Jirí Friml","orcid":"0000-0002-8302-7596","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jirí"},{"id":"38F4F166-F248-11E8-B48F-1D18A9856A87","first_name":"Eva","full_name":"Eva Benková","last_name":"Benková","orcid":"0000-0002-8510-9739"},{"first_name":"Ari","last_name":"Mähönen","full_name":"Mähönen, Ari Pekka"},{"last_name":"Helariutta","full_name":"Helariutta, Ykä","first_name":"Ykä"}],"day":"07","doi":"10.1016/j.cub.2011.04.017","year":"2011","type":"journal_article","title":"A mutually inhibitory interaction between auxin and cytokinin specifies vascular pattern in roots","citation":{"chicago":"Bishopp, Anthony, Hanna Help, Sedeer El Showk, Dolf Weijers, Ben Scheres, Jiří Friml, Eva Benková, Ari Mähönen, and Ykä Helariutta. “A Mutually Inhibitory Interaction between Auxin and Cytokinin Specifies Vascular Pattern in Roots.” <i>Current Biology</i>. Cell Press, 2011. <a href=\"https://doi.org/10.1016/j.cub.2011.04.017\">https://doi.org/10.1016/j.cub.2011.04.017</a>.","ama":"Bishopp A, Help H, El Showk S, et al. A mutually inhibitory interaction between auxin and cytokinin specifies vascular pattern in roots. <i>Current Biology</i>. 2011;21(11):917-926. doi:<a href=\"https://doi.org/10.1016/j.cub.2011.04.017\">10.1016/j.cub.2011.04.017</a>","apa":"Bishopp, A., Help, H., El Showk, S., Weijers, D., Scheres, B., Friml, J., … Helariutta, Y. (2011). A mutually inhibitory interaction between auxin and cytokinin specifies vascular pattern in roots. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2011.04.017\">https://doi.org/10.1016/j.cub.2011.04.017</a>","ieee":"A. Bishopp <i>et al.</i>, “A mutually inhibitory interaction between auxin and cytokinin specifies vascular pattern in roots,” <i>Current Biology</i>, vol. 21, no. 11. Cell Press, pp. 917–926, 2011.","short":"A. Bishopp, H. Help, S. El Showk, D. Weijers, B. Scheres, J. Friml, E. Benková, A. Mähönen, Y. Helariutta, Current Biology 21 (2011) 917–926.","mla":"Bishopp, Anthony, et al. “A Mutually Inhibitory Interaction between Auxin and Cytokinin Specifies Vascular Pattern in Roots.” <i>Current Biology</i>, vol. 21, no. 11, Cell Press, 2011, pp. 917–26, doi:<a href=\"https://doi.org/10.1016/j.cub.2011.04.017\">10.1016/j.cub.2011.04.017</a>.","ista":"Bishopp A, Help H, El Showk S, Weijers D, Scheres B, Friml J, Benková E, Mähönen A, Helariutta Y. 2011. A mutually inhibitory interaction between auxin and cytokinin specifies vascular pattern in roots. Current Biology. 21(11), 917–926."},"volume":21,"publisher":"Cell Press","extern":1,"abstract":[{"lang":"eng","text":"Background: Whereas the majority of animals develop toward a predetermined body plan, plants show iterative growth and continually produce new organs and structures from actively dividing meristems. This raises an intriguing question: How are these newly developed organs patterned? In Arabidopsis embryos, radial symmetry is broken by the bisymmetric specification of the cotyledons in the apical domain. Subsequently, this bisymmetry is propagated to the root promeristem. Results: Here we present a mutually inhibitory feedback loop between auxin and cytokinin that sets distinct boundaries of hormonal output. Cytokinins promote the bisymmetric distribution of the PIN-FORMED (PIN) auxin efflux proteins, which channel auxin toward a central domain. High auxin promotes transcription of the cytokinin signaling inhibitor AHP6, which closes the interaction loop. This bisymmetric auxin response domain specifies the differentiation of protoxylem in a bisymmetric pattern. In embryonic roots, cytokinin is required to translate a bisymmetric auxin response in the cotyledons to a bisymmetric vascular pattern in the root promeristem. Conclusions: Our results present an interactive feedback loop between hormonal signaling and transport by which small biases in hormonal input are propagated into distinct signaling domains to specify the vascular pattern in the root meristem. It is an intriguing possibility that such a mechanism could transform radial patterns and allow continuous vascular connections between other newly emerging organs."}],"publist_id":"3613","_id":"3088","date_created":"2018-12-11T12:01:18Z","page":"917 - 926","intvolume":"        21","quality_controlled":0,"publication":"Current Biology","month":"06","status":"public","issue":"11","publication_status":"published"}]