[{"date_created":"2024-10-15T11:20:54Z","publication_status":"published","_id":"18357","issue":"3","scopus_import":"1","month":"03","quality_controlled":"1","citation":{"ista":"Bronstein AM, Bronstein MM, Kimmel R. 2009. Topology-invariant similarity of nonrigid shapes. International Journal of Computer Vision. 81(3), 281–301.","chicago":"Bronstein, Alex M., Michael M. Bronstein, and Ron Kimmel. “Topology-Invariant Similarity of Nonrigid Shapes.” <i>International Journal of Computer Vision</i>. Springer Nature, 2009. <a href=\"https://doi.org/10.1007/s11263-008-0172-2\">https://doi.org/10.1007/s11263-008-0172-2</a>.","mla":"Bronstein, Alex M., et al. “Topology-Invariant Similarity of Nonrigid Shapes.” <i>International Journal of Computer Vision</i>, vol. 81, no. 3, Springer Nature, 2009, pp. 281–301, doi:<a href=\"https://doi.org/10.1007/s11263-008-0172-2\">10.1007/s11263-008-0172-2</a>.","ieee":"A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “Topology-invariant similarity of nonrigid shapes,” <i>International Journal of Computer Vision</i>, vol. 81, no. 3. Springer Nature, pp. 281–301, 2009.","apa":"Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2009). Topology-invariant similarity of nonrigid shapes. <i>International Journal of Computer Vision</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11263-008-0172-2\">https://doi.org/10.1007/s11263-008-0172-2</a>","ama":"Bronstein AM, Bronstein MM, Kimmel R. Topology-invariant similarity of nonrigid shapes. <i>International Journal of Computer Vision</i>. 2009;81(3):281-301. doi:<a href=\"https://doi.org/10.1007/s11263-008-0172-2\">10.1007/s11263-008-0172-2</a>","short":"A.M. Bronstein, M.M. Bronstein, R. Kimmel, International Journal of Computer Vision 81 (2009) 281–301."},"type":"journal_article","extern":"1","abstract":[{"text":"This paper explores the problem of similarity criteria between nonrigid shapes. Broadly speaking, such criteria are divided into intrinsic and extrinsic, the first referring to the metric structure of the object and the latter to how it is laid out in the Euclidean space. Both criteria have their advantages and disadvantages: extrinsic similarity is sensitive to nonrigid deformations, while intrinsic similarity is sensitive to topological noise. In this paper, we approach the problem from the perspective of metric geometry. We show that by unifying the extrinsic and intrinsic similarity criteria, it is possible to obtain a stronger topology-invariant similarity, suitable for comparing deformed shapes with different topology. We construct this new joint criterion as a tradeoff between the extrinsic and intrinsic similarity and use it as a set-valued distance. Numerical results demonstrate the efficiency of our approach in cases where using either extrinsic or intrinsic criteria alone would fail.","lang":"eng"}],"OA_type":"closed access","volume":81,"publisher":"Springer Nature","oa_version":"None","page":"281-301","date_updated":"2024-10-22T07:27:15Z","author":[{"full_name":"Bronstein, Alexander","last_name":"Bronstein","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","orcid":"0000-0001-9699-8730","first_name":"Alexander"},{"full_name":"Bronstein, Michael M.","last_name":"Bronstein","first_name":"Michael M."},{"first_name":"Ron","full_name":"Kimmel, Ron","last_name":"Kimmel"}],"title":"Topology-invariant similarity of nonrigid shapes","article_processing_charge":"No","language":[{"iso":"eng"}],"status":"public","date_published":"2009-03-01T00:00:00Z","intvolume":"        81","day":"01","doi":"10.1007/s11263-008-0172-2","publication_identifier":{"issn":["0920-5691"],"eissn":["1573-1405"]},"year":"2009","article_type":"original","publication":"International Journal of Computer Vision","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"publication_status":"published","oa_version":"None","date_created":"2024-10-15T11:20:54Z","conference":{"name":"ICCV: International Conference on Computer Vision","location":"Kyoto, Japan","start_date":"2009-09-27","end_date":"2009-10-04"},"author":[{"first_name":"O.","full_name":"Rubinstein, O.","last_name":"Rubinstein"},{"first_name":"Y.","full_name":"Honen, Y.","last_name":"Honen"},{"orcid":"0000-0001-9699-8730","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","last_name":"Bronstein","full_name":"Bronstein, Alexander","first_name":"Alexander"},{"last_name":"Bronstein","full_name":"Bronstein, M. M.","first_name":"M. M."},{"last_name":"Kimmel","full_name":"Kimmel, R.","first_name":"R."}],"title":"3D-color video camera","date_updated":"2024-11-19T13:00:24Z","_id":"18391","language":[{"iso":"eng"}],"month":"10","status":"public","article_processing_charge":"No","scopus_import":"1","citation":{"ista":"Rubinstein O, Honen Y, Bronstein AM, Bronstein MM, Kimmel R. 2009. 3D-color video camera. 12th International Conference on Computer Vision Workshops. ICCV: International Conference on Computer Vision.","chicago":"Rubinstein, O., Y. Honen, Alex M. Bronstein, M. M. Bronstein, and R. Kimmel. “3D-Color Video Camera.” In <i>12th International Conference on Computer Vision Workshops</i>. IEEE, 2009. <a href=\"https://doi.org/10.1109/iccvw.2009.5457433\">https://doi.org/10.1109/iccvw.2009.5457433</a>.","mla":"Rubinstein, O., et al. “3D-Color Video Camera.” <i>12th International Conference on Computer Vision Workshops</i>, IEEE, 2009, doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457433\">10.1109/iccvw.2009.5457433</a>.","ama":"Rubinstein O, Honen Y, Bronstein AM, Bronstein MM, Kimmel R. 3D-color video camera. In: <i>12th International Conference on Computer Vision Workshops</i>. IEEE; 2009. doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457433\">10.1109/iccvw.2009.5457433</a>","apa":"Rubinstein, O., Honen, Y., Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2009). 3D-color video camera. In <i>12th International Conference on Computer Vision Workshops</i>. Kyoto, Japan: IEEE. <a href=\"https://doi.org/10.1109/iccvw.2009.5457433\">https://doi.org/10.1109/iccvw.2009.5457433</a>","ieee":"O. Rubinstein, Y. Honen, A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “3D-color video camera,” in <i>12th International Conference on Computer Vision Workshops</i>, Kyoto, Japan, 2009.","short":"O. Rubinstein, Y. Honen, A.M. Bronstein, M.M. Bronstein, R. Kimmel, in:, 12th International Conference on Computer Vision Workshops, IEEE, 2009."},"extern":"1","abstract":[{"text":"We introduce a design of a coded light-based 3D color video camera optimized for build up cost as well as accuracy in depth reconstruction and acquisition speed. The components of the system include a monochromatic camera and an off-the-shelf LED projector synchronized by a miniature circuit. The projected patterns are captured and processed at a rate of 200 fps and allow for real-time reconstruction of both depth and color at video rates. The reconstruction and display are performed at around 30 depth profiles and color texture per second using a graphics processing unit (GPU).","lang":"eng"}],"day":"15","doi":"10.1109/iccvw.2009.5457433","type":"conference","date_published":"2009-10-15T00:00:00Z","quality_controlled":"1","year":"2009","OA_type":"closed access","publication":"12th International Conference on Computer Vision Workshops","publisher":"IEEE","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"quality_controlled":"1","date_published":"2009-11-01T00:00:00Z","type":"conference","abstract":[{"lang":"eng","text":"Feature-based methods have recently gained popularity in computer vision and pattern recognition communities, in applications such as object recognition and image retrieval. In this paper, we explore analogous approaches in the 3D world applied to the problem of non-rigid shape search and retrieval in large databases."}],"doi":"10.1109/iccvw.2009.5457682","extern":"1","day":"01","citation":{"short":"M. Ovsjanikov, A.M. Bronstein, M.M. Bronstein, L.J. Guibas, in:, 12th International Conference on Computer Vision Workshops, IEEE, 2009.","ista":"Ovsjanikov M, Bronstein AM, Bronstein MM, Guibas LJ. 2009. Shape Google: A computer vision approach to isometry invariant shape retrieval. 12th International Conference on Computer Vision Workshops. ICCV: International Conference on Computer Vision.","chicago":"Ovsjanikov, Maks, Alex M. Bronstein, Michael M. Bronstein, and Leonidas J. Guibas. “Shape Google: A Computer Vision Approach to Isometry Invariant Shape Retrieval.” In <i>12th International Conference on Computer Vision Workshops</i>. IEEE, 2009. <a href=\"https://doi.org/10.1109/iccvw.2009.5457682\">https://doi.org/10.1109/iccvw.2009.5457682</a>.","mla":"Ovsjanikov, Maks, et al. “Shape Google: A Computer Vision Approach to Isometry Invariant Shape Retrieval.” <i>12th International Conference on Computer Vision Workshops</i>, IEEE, 2009, doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457682\">10.1109/iccvw.2009.5457682</a>.","apa":"Ovsjanikov, M., Bronstein, A. M., Bronstein, M. M., &#38; Guibas, L. J. (2009). Shape Google: A computer vision approach to isometry invariant shape retrieval. In <i>12th International Conference on Computer Vision Workshops</i>. Kyoto, Japan: IEEE. <a href=\"https://doi.org/10.1109/iccvw.2009.5457682\">https://doi.org/10.1109/iccvw.2009.5457682</a>","ama":"Ovsjanikov M, Bronstein AM, Bronstein MM, Guibas LJ. Shape Google: A computer vision approach to isometry invariant shape retrieval. In: <i>12th International Conference on Computer Vision Workshops</i>. IEEE; 2009. doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457682\">10.1109/iccvw.2009.5457682</a>","ieee":"M. Ovsjanikov, A. M. Bronstein, M. M. Bronstein, and L. J. Guibas, “Shape Google: A computer vision approach to isometry invariant shape retrieval,” in <i>12th International Conference on Computer Vision Workshops</i>, Kyoto, Japan, 2009."},"publication_identifier":{"isbn":["9781424444427"]},"year":"2009","publication":"12th International Conference on Computer Vision Workshops","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"IEEE","date_created":"2024-10-15T11:20:54Z","oa_version":"None","publication_status":"published","conference":{"name":"ICCV: International Conference on Computer Vision","location":"Kyoto, Japan","start_date":"2009-10-27","end_date":"2009-10-04"},"date_updated":"2024-11-18T10:38:45Z","_id":"18392","author":[{"last_name":"Ovsjanikov","full_name":"Ovsjanikov, Maks","first_name":"Maks"},{"id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","full_name":"Bronstein, Alexander","last_name":"Bronstein","orcid":"0000-0001-9699-8730","first_name":"Alexander"},{"last_name":"Bronstein","full_name":"Bronstein, Michael M.","first_name":"Michael M."},{"first_name":"Leonidas J.","last_name":"Guibas","full_name":"Guibas, Leonidas J."}],"title":"Shape Google: A computer vision approach to isometry invariant shape retrieval","scopus_import":"1","article_processing_charge":"No","language":[{"iso":"eng"}],"month":"11","status":"public"},{"publication_status":"published","oa_version":"None","date_created":"2024-10-15T11:20:54Z","conference":{"name":"ICCV: International Conference on Computer Vision","location":"Kyoto, Japan","start_date":"2009-09-27","end_date":"2009-10-04"},"author":[{"first_name":"Yohai S.","full_name":"Devir, Yohai S.","last_name":"Devir"},{"full_name":"Rosman, Guy","last_name":"Rosman","first_name":"Guy"},{"first_name":"Alexander","orcid":"0000-0001-9699-8730","last_name":"Bronstein","full_name":"Bronstein, Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6"},{"first_name":"Michael M.","full_name":"Bronstein, Michael M.","last_name":"Bronstein"},{"first_name":"Ron","last_name":"Kimmel","full_name":"Kimmel, Ron"}],"title":"On reconstruction of non-rigid shapes with intrinsic regularization","_id":"18393","date_updated":"2024-11-18T10:29:12Z","status":"public","language":[{"iso":"eng"}],"month":"11","article_processing_charge":"No","scopus_import":"1","citation":{"short":"Y.S. Devir, G. Rosman, A.M. Bronstein, M.M. Bronstein, R. Kimmel, in:, 12th International Conference on Computer Vision Workshops, IEEE, 2009.","chicago":"Devir, Yohai S., Guy Rosman, Alex M. Bronstein, Michael M. Bronstein, and Ron Kimmel. “On Reconstruction of Non-Rigid Shapes with Intrinsic Regularization.” In <i>12th International Conference on Computer Vision Workshops</i>. IEEE, 2009. <a href=\"https://doi.org/10.1109/iccvw.2009.5457688\">https://doi.org/10.1109/iccvw.2009.5457688</a>.","ista":"Devir YS, Rosman G, Bronstein AM, Bronstein MM, Kimmel R. 2009. On reconstruction of non-rigid shapes with intrinsic regularization. 12th International Conference on Computer Vision Workshops. ICCV: International Conference on Computer Vision.","mla":"Devir, Yohai S., et al. “On Reconstruction of Non-Rigid Shapes with Intrinsic Regularization.” <i>12th International Conference on Computer Vision Workshops</i>, IEEE, 2009, doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457688\">10.1109/iccvw.2009.5457688</a>.","apa":"Devir, Y. S., Rosman, G., Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2009). On reconstruction of non-rigid shapes with intrinsic regularization. In <i>12th International Conference on Computer Vision Workshops</i>. Kyoto, Japan: IEEE. <a href=\"https://doi.org/10.1109/iccvw.2009.5457688\">https://doi.org/10.1109/iccvw.2009.5457688</a>","ama":"Devir YS, Rosman G, Bronstein AM, Bronstein MM, Kimmel R. On reconstruction of non-rigid shapes with intrinsic regularization. In: <i>12th International Conference on Computer Vision Workshops</i>. IEEE; 2009. doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457688\">10.1109/iccvw.2009.5457688</a>","ieee":"Y. S. Devir, G. Rosman, A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “On reconstruction of non-rigid shapes with intrinsic regularization,” in <i>12th International Conference on Computer Vision Workshops</i>, Kyoto, Japan, 2009."},"extern":"1","type":"conference","day":"01","doi":"10.1109/iccvw.2009.5457688","abstract":[{"text":"Shape-from-X is a generic type of inverse problems in computer vision, in which a shape is reconstructed from some measurements. A specially challenging setting of this problem is the case in which the reconstructed shapes are non-rigid. In this paper, we propose a framework for intrinsic regularization of such problems. The assumption is that we have the geometric structure of a shape which is intrinsically (up to bending) similar to the one we would like to reconstruct. For that goal, we formulate a variation with respect to vertex coordinates of a triangulated mesh approximating the continuous shape. The numerical core of the proposed method is based on differentiating the fast marching update step for geodesic distance computation.","lang":"eng"}],"date_published":"2009-11-01T00:00:00Z","quality_controlled":"1","publication_identifier":{"isbn":["9781424444427"]},"year":"2009","publication":"12th International Conference on Computer Vision Workshops","publisher":"IEEE","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"publisher":"Information Processing Society of Japan","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"url":"https://doi.org/10.2197/ipsjtcva.1.105","open_access":"1"}],"volume":1,"publication":"IPSJ Transactions on Computer Vision and Applications","publication_identifier":{"eissn":["1882-6695"]},"year":"2009","citation":{"mla":"Bronstein, Alex M., et al. “Partial Similarity of Shapes Using a Statistical Significance Measure.” <i>IPSJ Transactions on Computer Vision and Applications</i>, vol. 1, Information Processing Society of Japan, 2009, pp. 105–14, doi:<a href=\"https://doi.org/10.2197/ipsjtcva.1.105\">10.2197/ipsjtcva.1.105</a>.","ista":"Bronstein AM, Bronstein MM, Carmon Y, Kimmel R. 2009. Partial similarity of shapes using a statistical significance measure. IPSJ Transactions on Computer Vision and Applications. 1, 105–114.","chicago":"Bronstein, Alex M., Michael M. Bronstein, Yair Carmon, and Ron Kimmel. “Partial Similarity of Shapes Using a Statistical Significance Measure.” <i>IPSJ Transactions on Computer Vision and Applications</i>. Information Processing Society of Japan, 2009. <a href=\"https://doi.org/10.2197/ipsjtcva.1.105\">https://doi.org/10.2197/ipsjtcva.1.105</a>.","ieee":"A. M. Bronstein, M. M. Bronstein, Y. Carmon, and R. Kimmel, “Partial similarity of shapes using a statistical significance measure,” <i>IPSJ Transactions on Computer Vision and Applications</i>, vol. 1. Information Processing Society of Japan, pp. 105–114, 2009.","ama":"Bronstein AM, Bronstein MM, Carmon Y, Kimmel R. Partial similarity of shapes using a statistical significance measure. <i>IPSJ Transactions on Computer Vision and Applications</i>. 2009;1:105-114. doi:<a href=\"https://doi.org/10.2197/ipsjtcva.1.105\">10.2197/ipsjtcva.1.105</a>","apa":"Bronstein, A. M., Bronstein, M. M., Carmon, Y., &#38; Kimmel, R. (2009). Partial similarity of shapes using a statistical significance measure. <i>IPSJ Transactions on Computer Vision and Applications</i>. Information Processing Society of Japan. <a href=\"https://doi.org/10.2197/ipsjtcva.1.105\">https://doi.org/10.2197/ipsjtcva.1.105</a>","short":"A.M. Bronstein, M.M. Bronstein, Y. Carmon, R. Kimmel, IPSJ Transactions on Computer Vision and Applications 1 (2009) 105–114."},"oa":1,"doi":"10.2197/ipsjtcva.1.105","abstract":[{"text":"Partial matching of geometric structures is important in computer vision, pattern recognition and shape analysis applications. The problem consists of matching similar parts of shapes that may be dissimilar as a whole. Recently, it was proposed to consider partial similarity as a multi-criterion optimization problem trying to simultaneously maximize the similarity and the significance of the matching parts. A major challenge in that framework is providing a quantitative measure of the significance of a part of an object. Here, we define the significance of a part of a shape by its discriminative power with respect do a given shape database — that is, the uniqueness of the part. We define a point-wise significance density using a statistical weighting approach similar to the term frequency-inverse document frequency (tf-idf) weighting employed in search engines. The significance measure of a given part is obtained by integrating over this density. Numerical experiments show that the proposed approach produces intuitive significant parts, and demonstrate an improvement in the performance of partial matching between shapes. ","lang":"eng"}],"extern":"1","day":"31","type":"journal_article","date_published":"2009-03-31T00:00:00Z","quality_controlled":"1","intvolume":"         1","language":[{"iso":"eng"}],"status":"public","month":"03","article_processing_charge":"No","scopus_import":"1","title":"Partial similarity of shapes using a statistical significance measure","author":[{"first_name":"Alexander","full_name":"Bronstein, Alexander","last_name":"Bronstein","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","orcid":"0000-0001-9699-8730"},{"first_name":"Michael M.","full_name":"Bronstein, Michael M.","last_name":"Bronstein"},{"first_name":"Yair","last_name":"Carmon","full_name":"Carmon, Yair"},{"first_name":"Ron","full_name":"Kimmel, Ron","last_name":"Kimmel"}],"_id":"18438","date_updated":"2024-12-18T16:01:54Z","page":"105-114","publication_status":"published","oa_version":"Published Version","date_created":"2024-10-15T11:20:55Z"},{"year":"2009","publication_identifier":{"eisbn":["9781402094576"],"eissn":["1570-6605"],"isbn":["9781402094569"],"issn":["1570-6591"]},"date_published":"2009-01-01T00:00:00Z","day":"01","doi":"10.1007/978-1-4020-9457-6_15","oa":1,"OA_place":"repository","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","arxiv":1,"publication":"Astrophysics and Space Science Proceedings","oa_version":"Preprint","article_processing_charge":"No","status":"public","language":[{"iso":"eng"}],"page":"385-418","date_updated":"2025-01-03T12:14:49Z","author":[{"first_name":"Zoltán","orcid":"0000-0003-3633-5403","id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36","full_name":"Haiman, Zoltán","last_name":"Haiman"}],"title":"Observing the first stars and black holes","quality_controlled":"1","abstract":[{"lang":"eng","text":"The high sensitivity of JWST will open a new window on the end of the cosmological dark ages. Small stellar clusters, with a stellar mass of several × 106 M⊙, and low-mass black holes (BHs), with a mass of several $× 105 M⊙ should be directly detectable out to redshift z = 10, and individual supernovae (SNe) and gamma ray burst GRB afterglows are bright enough to be visible beyond this redshift. Dense primordial gas, in the process of collapsing from large scales to form protogalaxies, may also be possible to image through diffuse recombination line emission, possibly even before stars or BHs are formed. In this article, I discuss the key physical processes that are expected to have determined the sizes of the first star–clusters and black holes, and the prospect of studying these objects by direct detections with JWST and with other instruments. The direct light emitted by the very first stellar clusters and intermediate-mass black holes at z > 10 will likely fall below JWST’s detection threshold. However, JWST could reveal a decline at the faint-end of the high-redshift luminosity function, and thereby shed light on radiative and other feedback effects that operate at these early epochs. JWST will also have the sensitivity to detect individual SNe from beyond z = 10. In a dedicated survey lasting for several weeks, thousands of SNe could be detected at z > 6, with a redshift distribution extending to the formation of the very first stars at z ≳ 15. Using these SNe as tracers may be the only method to map out the earliest stages of the cosmic star–formation history. Finally, we point out that studying the earliest objects at high redshift will also offer a new window on the primordial power spectrum, on ∼100 times smaller scales than probed by current large-scale structure data."}],"extern":"1","type":"conference","citation":{"short":"Z. Haiman, in:, Astrophysics and Space Science Proceedings, Springer Nature, Dordrecht, 2009, pp. 385–418.","ieee":"Z. Haiman, “Observing the first stars and black holes,” in <i>Astrophysics and Space Science Proceedings</i>, 2009, pp. 385–418.","apa":"Haiman, Z. (2009). Observing the first stars and black holes. In <i>Astrophysics and Space Science Proceedings</i> (pp. 385–418). Dordrecht: Springer Nature. <a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">https://doi.org/10.1007/978-1-4020-9457-6_15</a>","ama":"Haiman Z. Observing the first stars and black holes. In: <i>Astrophysics and Space Science Proceedings</i>. Dordrecht: Springer Nature; 2009:385-418. doi:<a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">10.1007/978-1-4020-9457-6_15</a>","chicago":"Haiman, Zoltán. “Observing the First Stars and Black Holes.” In <i>Astrophysics and Space Science Proceedings</i>, 385–418. Dordrecht: Springer Nature, 2009. <a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">https://doi.org/10.1007/978-1-4020-9457-6_15</a>.","ista":"Haiman Z. 2009. Observing the first stars and black holes. Astrophysics and Space Science Proceedings. , Astrophysics and Space Science Proceedings, , 385–418.","mla":"Haiman, Zoltán. “Observing the First Stars and Black Holes.” <i>Astrophysics and Space Science Proceedings</i>, Springer Nature, 2009, pp. 385–418, doi:<a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">10.1007/978-1-4020-9457-6_15</a>."},"main_file_link":[{"url":"https://arxiv.org/abs/0809.3926","open_access":"1"}],"publisher":"Springer Nature","OA_type":"green","external_id":{"arxiv":["0809.3926"]},"alternative_title":["Astrophysics and Space Science Proceedings"],"date_created":"2025-01-03T12:09:18Z","publication_status":"published","scopus_import":"1","place":"Dordrecht","month":"01","_id":"18726"},{"oa_version":"Preprint","editor":[{"first_name":"Harley A.","full_name":"Thronson, Harley A.","last_name":"Thronson"},{"last_name":"Stiavelli","full_name":"Stiavelli, Massimo","first_name":"Massimo"},{"last_name":"Tielens","full_name":"Tielens, Alexander","first_name":"Alexander"}],"date_updated":"2025-01-07T12:52:13Z","page":"385-418","title":"Observing the First Stars and Black Holes","author":[{"orcid":"0000-0003-3633-5403","last_name":"Haiman","full_name":"Haiman, Zoltán","id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36","first_name":"Zoltán"}],"article_processing_charge":"No","status":"public","language":[{"iso":"eng"}],"date_published":"2009-02-11T00:00:00Z","oa":1,"day":"11","doi":"10.1007/978-1-4020-9457-6_15","publication_identifier":{"eissn":["1570-6605"],"eisbn":["9781402094576"],"isbn":["9781402094569"],"issn":["1570-6591"]},"year":"2009","arxiv":1,"publication":"Astrophysics in the Next Decade","OA_place":"repository","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2025-01-03T12:29:16Z","publication_status":"published","external_id":{"arxiv":["0809.3926"]},"alternative_title":["Astrophysics and Space Science Proceedings"],"_id":"18735","scopus_import":"1","month":"02","quality_controlled":"1","citation":{"short":"Z. Haiman, in:, H.A. Thronson, M. Stiavelli, A. Tielens (Eds.), Astrophysics in the Next Decade, Springer Nature, 2009, pp. 385–418.","ama":"Haiman Z. Observing the First Stars and Black Holes. In: Thronson HA, Stiavelli M, Tielens A, eds. <i>Astrophysics in the Next Decade</i>. Springer Nature; 2009:385-418. doi:<a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">10.1007/978-1-4020-9457-6_15</a>","ieee":"Z. Haiman, “Observing the First Stars and Black Holes,” in <i>Astrophysics in the Next Decade</i>, H. A. Thronson, M. Stiavelli, and A. Tielens, Eds. Springer Nature, 2009, pp. 385–418.","apa":"Haiman, Z. (2009). Observing the First Stars and Black Holes. In H. A. Thronson, M. Stiavelli, &#38; A. Tielens (Eds.), <i>Astrophysics in the Next Decade</i> (pp. 385–418). Springer Nature. <a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">https://doi.org/10.1007/978-1-4020-9457-6_15</a>","mla":"Haiman, Zoltán. “Observing the First Stars and Black Holes.” <i>Astrophysics in the Next Decade</i>, edited by Harley A. Thronson et al., Springer Nature, 2009, pp. 385–418, doi:<a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">10.1007/978-1-4020-9457-6_15</a>.","ista":"Haiman Z. 2009.Observing the First Stars and Black Holes. In: Astrophysics in the Next Decade. Astrophysics and Space Science Proceedings, , 385–418.","chicago":"Haiman, Zoltán. “Observing the First Stars and Black Holes.” In <i>Astrophysics in the Next Decade</i>, edited by Harley A. Thronson, Massimo Stiavelli, and Alexander Tielens, 385–418. Springer Nature, 2009. <a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">https://doi.org/10.1007/978-1-4020-9457-6_15</a>."},"extern":"1","type":"book_chapter","abstract":[{"text":"The high sensitivity of JWST will open a new window on the end of the cosmological dark ages. Small stellar clusters, with a stellar mass of several × 106 M⊙, and low-mass black holes (BHs), with a mass of several $× 105 M⊙ should be directly detectable out to redshift z = 10, and individual supernovae (SNe) and gamma ray burst GRB afterglows are bright enough to be visible beyond this redshift. Dense primordial gas, in the process of collapsing from large scales to form protogalaxies, may also be possible to image through diffuse recombination line emission, possibly even before stars or BHs are formed. In this article, I discuss the key physical processes that are expected to have determined the sizes of the first star–clusters and black holes, and the prospect of studying these objects by direct detections with JWST and with other instruments. The direct light emitted by the very first stellar clusters and intermediate-mass black holes at z > 10 will likely fall below JWST’s detection threshold. However, JWST could reveal a decline at the faint-end of the high-redshift luminosity function, and thereby shed light on radiative and other feedback effects that operate at these early epochs. JWST will also have the sensitivity to detect individual SNe from beyond z = 10. In a dedicated survey lasting for several weeks, thousands of SNe could be detected at z > 6, with a redshift distribution extending to the formation of the very first stars at z ≳ 15. Using these SNe as tracers may be the only method to map out the earliest stages of the cosmic star–formation history. Finally, we point out that studying the earliest objects at high redshift will also offer a new window on the primordial power spectrum, on ∼100 times smaller scales than probed by current large-scale structure data.","lang":"eng"}],"OA_type":"green","main_file_link":[{"url":"https://arxiv.org/abs/0809.3926","open_access":"1"}],"publisher":"Springer Nature"},{"author":[{"full_name":"Carenzo, Marco","last_name":"Carenzo","first_name":"Marco"},{"orcid":"0000-0002-5554-8087","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti","first_name":"Francesca"},{"first_name":"Stefan","full_name":"Rimkus, Stefan","last_name":"Rimkus"},{"full_name":"Burlando, Paolo","last_name":"Burlando","first_name":"Paolo"}],"title":"Assessing the transferability and robustness of an enhanced temperature-index glacier-melt model","date_updated":"2024-10-14T12:00:39Z","page":"258-274","language":[{"iso":"eng"}],"status":"public","article_processing_charge":"No","oa_version":"Published Version","publication":"Journal of Glaciology","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"day":"01","doi":"10.3189/002214309788608804","date_published":"2009-03-01T00:00:00Z","intvolume":"        55","article_type":"original","year":"2009","publication_identifier":{"eissn":["1727-5652"],"issn":["0022-1430"]},"_id":"12654","month":"03","issue":"190","scopus_import":"1","publication_status":"published","date_created":"2023-02-20T08:18:34Z","volume":55,"publisher":"Cambridge University Press","main_file_link":[{"open_access":"1","url":"https://doi.org/10.3189/002214309788608804"}],"citation":{"ama":"Carenzo M, Pellicciotti F, Rimkus S, Burlando P. Assessing the transferability and robustness of an enhanced temperature-index glacier-melt model. <i>Journal of Glaciology</i>. 2009;55(190):258-274. doi:<a href=\"https://doi.org/10.3189/002214309788608804\">10.3189/002214309788608804</a>","apa":"Carenzo, M., Pellicciotti, F., Rimkus, S., &#38; Burlando, P. (2009). Assessing the transferability and robustness of an enhanced temperature-index glacier-melt model. <i>Journal of Glaciology</i>. Cambridge University Press. <a href=\"https://doi.org/10.3189/002214309788608804\">https://doi.org/10.3189/002214309788608804</a>","ieee":"M. Carenzo, F. Pellicciotti, S. Rimkus, and P. Burlando, “Assessing the transferability and robustness of an enhanced temperature-index glacier-melt model,” <i>Journal of Glaciology</i>, vol. 55, no. 190. Cambridge University Press, pp. 258–274, 2009.","mla":"Carenzo, Marco, et al. “Assessing the Transferability and Robustness of an Enhanced Temperature-Index Glacier-Melt Model.” <i>Journal of Glaciology</i>, vol. 55, no. 190, Cambridge University Press, 2009, pp. 258–74, doi:<a href=\"https://doi.org/10.3189/002214309788608804\">10.3189/002214309788608804</a>.","chicago":"Carenzo, Marco, Francesca Pellicciotti, Stefan Rimkus, and Paolo Burlando. “Assessing the Transferability and Robustness of an Enhanced Temperature-Index Glacier-Melt Model.” <i>Journal of Glaciology</i>. Cambridge University Press, 2009. <a href=\"https://doi.org/10.3189/002214309788608804\">https://doi.org/10.3189/002214309788608804</a>.","ista":"Carenzo M, Pellicciotti F, Rimkus S, Burlando P. 2009. Assessing the transferability and robustness of an enhanced temperature-index glacier-melt model. Journal of Glaciology. 55(190), 258–274.","short":"M. Carenzo, F. Pellicciotti, S. Rimkus, P. Burlando, Journal of Glaciology 55 (2009) 258–274."},"type":"journal_article","abstract":[{"lang":"eng","text":"We investigate the transferability of an enhanced temperature-index melt model that was developed and tested on Haut Glacier d’Arolla, Switzerland, in the 2001 season. The model’s empirical parameters (temperature factor, TF, and shortwave radiation factor, SRF) are recalibrated for: (1) other locations on Haut Glacier d’Arolla; (2) subperiods of distinct meteorological conditions; (3) different years on Haut Glacier d’Arolla; and (4) other glaciers in different years. The model parameters are optimized against simulations of an energy-balance model validated against ablation observations. Results are compared with those obtained with the original parameters. The model works very well when applied to other sites, seasons and glaciers, with the exception of overcast conditions. Differences are due to underestimation of high melt rates. The parameter values are associated with the prevailing energy-balance conditions, showing that high SRF are obtained on clear-sky days, whereas higher TF are typical of locations where glacier winds prevail and turbulent fluxes are high. We also provide a range of parameters clearly associated with the site’s location and its meteorological characteristics that could help to assign parameter values to sites where few data are available."}],"extern":"1","quality_controlled":"1"},{"_id":"12655","month":"01","scopus_import":"1","issue":"50","publication_status":"published","date_created":"2023-02-20T08:18:40Z","volume":50,"publisher":"International Glaciological Society","main_file_link":[{"open_access":"1","url":"https://doi.org/10.3189/172756409787769555"}],"abstract":[{"text":"We discuss the inclusion of the subsurface heat-conduction flux into the calculation of the energy balance and ablation at the glacier–atmosphere interface. Data from automatic weather stations are used to force an energy-balance model at several locations on alpine glaciers and at one site in the dry Andes of central Chile. The heat-conduction flux is computed using a two-layer scheme, assuming that 36% of the net shortwave radiation is absorbed by the surface layer and that the rest penetrates into the snowpack. We compare simulations conducted with and without subsurface heat flux. Results show that assuming a surface temperature of zero degrees leads to a larger overestimation of melt at the sites in the accumulation area (10.4–13.3%) than in the ablation area (0.5–2.8%), due to lower air temperatures and the presence of snow. The difference between simulations with and without heat conduction is also high at the beginning and end of the ablation season (up to 29% for the first 15 days of the season), when air temperatures are lower and snow covers the glacier surface, while they are of little importance during periods of sustained melt at all the locations investigated.","lang":"eng"}],"type":"journal_article","extern":"1","citation":{"short":"F. Pellicciotti, M. Carenzo, J. Helbing, S. Rimkus, P. Burlando, Annals of Glaciology 50 (2009) 16–24.","ista":"Pellicciotti F, Carenzo M, Helbing J, Rimkus S, Burlando P. 2009. On the role of subsurface heat conduction in glacier energy-balance modelling. Annals of Glaciology. 50(50), 16–24.","chicago":"Pellicciotti, Francesca, Marco Carenzo, Jakob Helbing, Stefan Rimkus, and Paolo Burlando. “On the Role of Subsurface Heat Conduction in Glacier Energy-Balance Modelling.” <i>Annals of Glaciology</i>. International Glaciological Society, 2009. <a href=\"https://doi.org/10.3189/172756409787769555\">https://doi.org/10.3189/172756409787769555</a>.","mla":"Pellicciotti, Francesca, et al. “On the Role of Subsurface Heat Conduction in Glacier Energy-Balance Modelling.” <i>Annals of Glaciology</i>, vol. 50, no. 50, International Glaciological Society, 2009, pp. 16–24, doi:<a href=\"https://doi.org/10.3189/172756409787769555\">10.3189/172756409787769555</a>.","apa":"Pellicciotti, F., Carenzo, M., Helbing, J., Rimkus, S., &#38; Burlando, P. (2009). On the role of subsurface heat conduction in glacier energy-balance modelling. <i>Annals of Glaciology</i>. International Glaciological Society. <a href=\"https://doi.org/10.3189/172756409787769555\">https://doi.org/10.3189/172756409787769555</a>","ama":"Pellicciotti F, Carenzo M, Helbing J, Rimkus S, Burlando P. On the role of subsurface heat conduction in glacier energy-balance modelling. <i>Annals of Glaciology</i>. 2009;50(50):16-24. doi:<a href=\"https://doi.org/10.3189/172756409787769555\">10.3189/172756409787769555</a>","ieee":"F. Pellicciotti, M. Carenzo, J. Helbing, S. Rimkus, and P. Burlando, “On the role of subsurface heat conduction in glacier energy-balance modelling,” <i>Annals of Glaciology</i>, vol. 50, no. 50. International Glaciological Society, pp. 16–24, 2009."},"quality_controlled":"1","title":"On the role of subsurface heat conduction in glacier energy-balance modelling","author":[{"orcid":"0000-0002-5554-8087","last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca"},{"full_name":"Carenzo, Marco","last_name":"Carenzo","first_name":"Marco"},{"full_name":"Helbing, Jakob","last_name":"Helbing","first_name":"Jakob"},{"last_name":"Rimkus","full_name":"Rimkus, Stefan","first_name":"Stefan"},{"first_name":"Paolo","last_name":"Burlando","full_name":"Burlando, Paolo"}],"page":"16-24","date_updated":"2024-10-14T12:00:29Z","status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No","oa_version":"Published Version","publication":"Annals of Glaciology","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.3189/172756409787769555","day":"01","oa":1,"intvolume":"        50","date_published":"2009-01-01T00:00:00Z","year":"2009","article_type":"original","publication_identifier":{"eissn":["1727-5644"],"issn":["0260-3055"]}},{"citation":{"mla":"Raghu, Shamprasad, et al. “Synaptic Organization of Lobula Plate Tangential Cells in Drosophila: Dα7 Cholinergic Receptors.” <i>Journal of Neurogenetics</i>, vol. 23, no. 1–2, Informa Healthcare, 2009, pp. 200–09, doi:<a href=\"https://doi.org/10.1080/01677060802471684\">10.1080/01677060802471684</a>.","ista":"Raghu S, Jösch MA, Sigrist S, Borst A, Reiff D. 2009. Synaptic organization of lobula plate tangential cells in Drosophila: Dα7 cholinergic receptors. Journal of Neurogenetics. 23(1–2), 200–209.","chicago":"Raghu, Shamprasad, Maximilian A Jösch, Stephan Sigrist, Alexander Borst, and Dierk Reiff. “Synaptic Organization of Lobula Plate Tangential Cells in Drosophila: Dα7 Cholinergic Receptors.” <i>Journal of Neurogenetics</i>. Informa Healthcare, 2009. <a href=\"https://doi.org/10.1080/01677060802471684\">https://doi.org/10.1080/01677060802471684</a>.","ieee":"S. Raghu, M. A. Jösch, S. Sigrist, A. Borst, and D. Reiff, “Synaptic organization of lobula plate tangential cells in Drosophila: Dα7 cholinergic receptors,” <i>Journal of Neurogenetics</i>, vol. 23, no. 1–2. Informa Healthcare, pp. 200–209, 2009.","ama":"Raghu S, Jösch MA, Sigrist S, Borst A, Reiff D. Synaptic organization of lobula plate tangential cells in Drosophila: Dα7 cholinergic receptors. <i>Journal of Neurogenetics</i>. 2009;23(1-2):200-209. doi:<a href=\"https://doi.org/10.1080/01677060802471684\">10.1080/01677060802471684</a>","apa":"Raghu, S., Jösch, M. A., Sigrist, S., Borst, A., &#38; Reiff, D. (2009). Synaptic organization of lobula plate tangential cells in Drosophila: Dα7 cholinergic receptors. <i>Journal of Neurogenetics</i>. Informa Healthcare. <a href=\"https://doi.org/10.1080/01677060802471684\">https://doi.org/10.1080/01677060802471684</a>","short":"S. Raghu, M.A. Jösch, S. Sigrist, A. Borst, D. Reiff, Journal of Neurogenetics 23 (2009) 200–209."},"day":"01","doi":"10.1080/01677060802471684","extern":1,"abstract":[{"lang":"eng","text":"The nervous system of seeing animals derives information about optic flow in two subsequent steps. First, local motion vectors are calculated from moving retinal images, and second, the spatial distribution of these vectors is analyzed on the dendrites of large downstream neurons. In dipteran flies, this second step relies on a set of motion-sensitive lobula plate tangential cells (LPTCs), which have been studied in great detail in large fly species. Yet, studies on neurons that convey information to LPTCs and neuroanatomical investigations that enable a mechanistic understanding of the underlying dendritic computations in LPTCs are rare. We investigated the subcellular distribution of nicotinic acetylcholine receptors (nAChRs) on two sets of LPTCs: vertical system (VS) and horizontal system (HS) cells in Drosophila melanogaster. In this paper, we describe that both cell types express Dα7-type nAChR subunits specifically on higher order dendritic branches, similar to the expression of gamma aminobutyric acid (GABA) receptors. These findings support a model in which directional selectivity of LPTCs is achieved by the dendritic integration of excitatory, cholinergic, and inhibitory GABA-ergic input from local motion detectors with opposite preferred direction. Nonetheless, whole-cell recordings in mutant flies without Dα7 nAChRs revealed that direction selectivity of VS and HS cells is largely retained. In addition, mutant LPTCs were responsive to acetylcholine and remaining nAChR receptors were labeled by α-bungarotoxin. These results in LPTCs with genetically manipulated excitatory input synapses suggest a robust cellular implementation of dendritic processing that warrants direction selectivity. The underlying mechanism that ensures appropriate nAChR-mediated synaptic currents and the functional implications of separate sets or heteromultimeric nAChRs can now be addressed in this system."}],"type":"journal_article","date_published":"2009-03-01T00:00:00Z","intvolume":"        23","quality_controlled":0,"year":"2009","volume":23,"publication":"Journal of Neurogenetics","publisher":"Informa Healthcare","publication_status":"published","publist_id":"5972","date_created":"2018-12-11T11:51:15Z","author":[{"full_name":"Raghu, Shamprasad V","last_name":"Raghu","first_name":"Shamprasad"},{"first_name":"Maximilian A","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","full_name":"Maximilian Jösch","last_name":"Jösch","orcid":"0000-0002-3937-1330"},{"last_name":"Sigrist","full_name":"Sigrist, Stephan J","first_name":"Stephan"},{"last_name":"Borst","full_name":"Borst, Alexander","first_name":"Alexander"},{"last_name":"Reiff","full_name":"Reiff, Dierk F","first_name":"Dierk"}],"title":"Synaptic organization of lobula plate tangential cells in Drosophila: Dα7 cholinergic receptors","date_updated":"2021-01-12T06:49:44Z","_id":"1302","page":"200 - 209","status":"public","month":"03","issue":"1-2"},{"intvolume":"       168","quality_controlled":0,"date_published":"2009-10-01T00:00:00Z","extern":1,"day":"01","doi":"10.1016/j.jsb.2009.03.016","type":"journal_article","abstract":[{"lang":"eng","text":"During many cellular processes such as cell division, polarization and motility, the plasma membrane does not only represent a passive physical barrier, but also provides a highly dynamic platform for the interplay between lipids, membrane binding proteins and cytoskeletal elements. Even though many regulators of these interactions are known, their mutual interdependence appears to be highly complex and difficult to study in a living cell. Over the past few years, in vitro studies on membrane-cytoskeleton interactions using biomimetic membranes turned out to be extremely helpful to get better mechanistic insight into the dynamics of these processes. In this review, we discuss some of the recent developments using in vitro assays to dissect the role of the players involved: lipids in the membrane, proteins binding to membranes and proteins binding to membrane proteins. We also summarize advantages and disadvantages of supported lipid bilayers as model membrane."}],"citation":{"ieee":"M. Loose and P. Schwille, “Biomimetic membrane systems to study cellular organization,” <i>Journal of Structural Biology</i>, vol. 168, no. 1. Academic Press, pp. 143–151, 2009.","apa":"Loose, M., &#38; Schwille, P. (2009). Biomimetic membrane systems to study cellular organization. <i>Journal of Structural Biology</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.jsb.2009.03.016\">https://doi.org/10.1016/j.jsb.2009.03.016</a>","ama":"Loose M, Schwille P. Biomimetic membrane systems to study cellular organization. <i>Journal of Structural Biology</i>. 2009;168(1):143-151. doi:<a href=\"https://doi.org/10.1016/j.jsb.2009.03.016\">10.1016/j.jsb.2009.03.016</a>","ista":"Loose M, Schwille P. 2009. Biomimetic membrane systems to study cellular organization. Journal of Structural Biology. 168(1), 143–151.","chicago":"Loose, Martin, and Petra Schwille. “Biomimetic Membrane Systems to Study Cellular Organization.” <i>Journal of Structural Biology</i>. Academic Press, 2009. <a href=\"https://doi.org/10.1016/j.jsb.2009.03.016\">https://doi.org/10.1016/j.jsb.2009.03.016</a>.","mla":"Loose, Martin, and Petra Schwille. “Biomimetic Membrane Systems to Study Cellular Organization.” <i>Journal of Structural Biology</i>, vol. 168, no. 1, Academic Press, 2009, pp. 143–51, doi:<a href=\"https://doi.org/10.1016/j.jsb.2009.03.016\">10.1016/j.jsb.2009.03.016</a>.","short":"M. Loose, P. Schwille, Journal of Structural Biology 168 (2009) 143–151."},"year":"2009","publication":"Journal of Structural Biology","volume":168,"publisher":"Academic Press","date_created":"2018-12-11T11:55:03Z","publist_id":"5099","publication_status":"published","_id":"1983","page":"143 - 151","date_updated":"2021-01-12T06:54:30Z","author":[{"orcid":"0000-0001-7309-9724","last_name":"Loose","full_name":"Martin Loose","id":"462D4284-F248-11E8-B48F-1D18A9856A87","first_name":"Martin"},{"last_name":"Schwille","full_name":"Schwille, Petra ","first_name":"Petra"}],"title":"Biomimetic membrane systems to study cellular organization","issue":"1","month":"10","status":"public"},{"acknowledgement":"This work was supported by EU contract LSHG-CT-2004-503568 ComBio, the Spanish ministry of education (M.M.C.), and EU-STREP active BioMics (A.D.). Research in the Nedelec lab is funded by the Center for Modeling and Simulation in the Biosciences (http://www.bioms.de), the Volkswagenstiftung, and Human Frontier Science Program grant RGY84.","year":"2009","quality_controlled":0,"intvolume":"       138","date_published":"2009-08-07T00:00:00Z","extern":1,"day":"07","type":"journal_article","abstract":[{"lang":"eng","text":"In animal and plant cells, mitotic chromatin locally generates microtubules that self-organize into a mitotic spindle, and its dimensions and bipolar symmetry are essential for accurate chromosome segregation. By immobilizing microscopic chromatin-coated beads on slide surfaces using a microprinting technique, we have examined the effect of chromatin on the dimensions and symmetry of spindles in Xenopus laevis cytoplasmic extracts. While circular spots with diameters around 14-18 μm trigger bipolar spindle formation, larger spots generate an incorrect number of poles. We also examined lines of chromatin with various dimensions. Their length determined the number of poles that formed, with a 6 × 18 μm rectangular patch generating normal spindle morphology. Around longer lines, multiple poles formed and the structures were disorganized. While lines thinner than 10 μm generated symmetric structures, thicker lines induced the formation of asymmetric structures where all microtubules are on the same side of the line. Our results show that chromatin defines spindle shape and orientation. For a video summary of this article, see the PaperFlick file available with the online Supplemental Data."}],"doi":"10.1016/j.cell.2009.05.027","citation":{"short":"A. Dinarina, C. Pugieux, M. Corral, M. Loose, J. Spatz, É. Karsenti, F. Nédélec, Cell 138 (2009) 502–513.","ama":"Dinarina A, Pugieux C, Corral M, et al. Chromatin shapes the mitotic spindle. <i>Cell</i>. 2009;138(3):502-513. doi:<a href=\"https://doi.org/10.1016/j.cell.2009.05.027\">10.1016/j.cell.2009.05.027</a>","ieee":"A. Dinarina <i>et al.</i>, “Chromatin shapes the mitotic spindle,” <i>Cell</i>, vol. 138, no. 3. Cell Press, pp. 502–513, 2009.","apa":"Dinarina, A., Pugieux, C., Corral, M., Loose, M., Spatz, J., Karsenti, É., &#38; Nédélec, F. (2009). Chromatin shapes the mitotic spindle. <i>Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cell.2009.05.027\">https://doi.org/10.1016/j.cell.2009.05.027</a>","mla":"Dinarina, Ana, et al. “Chromatin Shapes the Mitotic Spindle.” <i>Cell</i>, vol. 138, no. 3, Cell Press, 2009, pp. 502–13, doi:<a href=\"https://doi.org/10.1016/j.cell.2009.05.027\">10.1016/j.cell.2009.05.027</a>.","chicago":"Dinarina, Ana, Céline Pugieux, Maria Corral, Martin Loose, Joachim Spatz, Éric Karsenti, and François Nédélec. “Chromatin Shapes the Mitotic Spindle.” <i>Cell</i>. Cell Press, 2009. <a href=\"https://doi.org/10.1016/j.cell.2009.05.027\">https://doi.org/10.1016/j.cell.2009.05.027</a>.","ista":"Dinarina A, Pugieux C, Corral M, Loose M, Spatz J, Karsenti É, Nédélec F. 2009. Chromatin shapes the mitotic spindle. Cell. 138(3), 502–513."},"publisher":"Cell Press","publication":"Cell","volume":138,"date_created":"2018-12-11T11:55:03Z","publist_id":"5100","publication_status":"published","issue":"3","status":"public","month":"08","page":"502 - 513","_id":"1984","date_updated":"2021-01-12T06:54:30Z","author":[{"first_name":"Ana","full_name":"Dinarina, Ana","last_name":"Dinarina"},{"first_name":"Céline","last_name":"Pugieux","full_name":"Pugieux, Céline"},{"first_name":"Maria","full_name":"Corral, Maria M","last_name":"Corral"},{"first_name":"Martin","full_name":"Martin Loose","last_name":"Loose","id":"462D4284-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7309-9724"},{"first_name":"Joachim","full_name":"Spatz, Joachim P","last_name":"Spatz"},{"last_name":"Karsenti","full_name":"Karsenti, Éric","first_name":"Éric"},{"full_name":"Nédélec, François J","last_name":"Nédélec","first_name":"François"}],"title":"Chromatin shapes the mitotic spindle"},{"publist_id":"4971","date_created":"2018-12-11T11:55:31Z","publication_status":"published","_id":"2067","date_updated":"2021-01-12T06:55:06Z","page":"1699 - 1701","author":[{"first_name":"Beatriz","orcid":"0000-0002-4579-8306","last_name":"Vicoso","full_name":"Beatriz Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Brian","last_name":"Charlesworth","full_name":"Charlesworth, Brian"}],"title":"Recombination rates may affect the ratio of X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster","issue":"4","status":"public","month":"04","date_published":"2009-04-01T00:00:00Z","quality_controlled":0,"intvolume":"       181","citation":{"ieee":"B. Vicoso and B. Charlesworth, “Recombination rates may affect the ratio of X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster,” <i>Genetics</i>, vol. 181, no. 4. Genetics Society of America, pp. 1699–1701, 2009.","ama":"Vicoso B, Charlesworth B. Recombination rates may affect the ratio of X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster. <i>Genetics</i>. 2009;181(4):1699-1701. doi:<a href=\"https://doi.org/10.1534/genetics.108.098004\">10.1534/genetics.108.098004</a>","apa":"Vicoso, B., &#38; Charlesworth, B. (2009). Recombination rates may affect the ratio of X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.108.098004\">https://doi.org/10.1534/genetics.108.098004</a>","ista":"Vicoso B, Charlesworth B. 2009. Recombination rates may affect the ratio of X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster. Genetics. 181(4), 1699–1701.","chicago":"Vicoso, Beatriz, and Brian Charlesworth. “Recombination Rates May Affect the Ratio of X to Autosomal Noncoding Polymorphism in African Populations of Drosophila Melanogaster.” <i>Genetics</i>. Genetics Society of America, 2009. <a href=\"https://doi.org/10.1534/genetics.108.098004\">https://doi.org/10.1534/genetics.108.098004</a>.","mla":"Vicoso, Beatriz, and Brian Charlesworth. “Recombination Rates May Affect the Ratio of X to Autosomal Noncoding Polymorphism in African Populations of Drosophila Melanogaster.” <i>Genetics</i>, vol. 181, no. 4, Genetics Society of America, 2009, pp. 1699–701, doi:<a href=\"https://doi.org/10.1534/genetics.108.098004\">10.1534/genetics.108.098004</a>.","short":"B. Vicoso, B. Charlesworth, Genetics 181 (2009) 1699–1701."},"doi":"10.1534/genetics.108.098004","type":"journal_article","extern":1,"day":"01","year":"2009","acknowledgement":"This work was funded by a Portuguese Foundation for Science and Technology scholarship to B.V., and B.C. was supported by the Royal Society","publication":"Genetics","volume":181,"publisher":"Genetics Society of America"},{"_id":"2068","date_updated":"2021-01-12T06:55:06Z","page":"576 - 583","author":[{"last_name":"Vicoso","full_name":"Beatriz Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4579-8306","first_name":"Beatriz"},{"first_name":"Brian","full_name":"Charlesworth, Brian","last_name":"Charlesworth"}],"title":"The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation?","issue":"5","status":"public","month":"05","publist_id":"4970","date_created":"2018-12-11T11:55:31Z","publication_status":"published","publication":"Journal of Molecular Evolution","volume":68,"publisher":"Springer","date_published":"2009-05-01T00:00:00Z","quality_controlled":0,"intvolume":"        68","citation":{"short":"B. Vicoso, B. Charlesworth, Journal of Molecular Evolution 68 (2009) 576–583.","chicago":"Vicoso, Beatriz, and Brian Charlesworth. “The Deficit of Male-Biased Genes on the D. Melanogaster X Chromosome Is Expression-Dependent: A Consequence of Dosage Compensation?” <i>Journal of Molecular Evolution</i>. Springer, 2009. <a href=\"https://doi.org/10.1007/s00239-009-9235-4\">https://doi.org/10.1007/s00239-009-9235-4</a>.","ista":"Vicoso B, Charlesworth B. 2009. The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation? Journal of Molecular Evolution. 68(5), 576–583.","mla":"Vicoso, Beatriz, and Brian Charlesworth. “The Deficit of Male-Biased Genes on the D. Melanogaster X Chromosome Is Expression-Dependent: A Consequence of Dosage Compensation?” <i>Journal of Molecular Evolution</i>, vol. 68, no. 5, Springer, 2009, pp. 576–83, doi:<a href=\"https://doi.org/10.1007/s00239-009-9235-4\">10.1007/s00239-009-9235-4</a>.","ieee":"B. Vicoso and B. Charlesworth, “The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation?,” <i>Journal of Molecular Evolution</i>, vol. 68, no. 5. Springer, pp. 576–583, 2009.","ama":"Vicoso B, Charlesworth B. The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation? <i>Journal of Molecular Evolution</i>. 2009;68(5):576-583. doi:<a href=\"https://doi.org/10.1007/s00239-009-9235-4\">10.1007/s00239-009-9235-4</a>","apa":"Vicoso, B., &#38; Charlesworth, B. (2009). The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation? <i>Journal of Molecular Evolution</i>. Springer. <a href=\"https://doi.org/10.1007/s00239-009-9235-4\">https://doi.org/10.1007/s00239-009-9235-4</a>"},"abstract":[{"lang":"eng","text":"In Drosophila, there is a consistent deficit of male-biased genes on the X chromosome. It has been suggested that male-biased genes may evolve from initially unbiased genes as a result of increased expression levels in males. If transcription rates are limited, a large increase in expression in the testis may be harder to achieve for single-copy X-linked genes than for autosomal genes, because they are already hypertranscribed due to dosage compensation. This hypothesis predicts that the larger the increase in expression required to make a male-biased gene, the lower the chance of this being achievable if it is located on the X chromosome. Consequently, highly expressed male-biased genes should be located on the X chromosome less often than lowly expressed male-biased genes. This pattern is observed in our analysis of publicly available data, where microarray data or EST data are used to detect male-biased genes in D. melanogaster and to measure their expression levels. This is consistent with the idea that limitations in transcription rates may prevent male-biased genes from accumulating on the X chromosome."}],"type":"journal_article","doi":"10.1007/s00239-009-9235-4","day":"01","extern":1,"acknowledgement":"This work was funded by a Portuguese Foundation for Science and Technology scholarship to B.V., and B.C. was supported by the Royal Society","year":"2009"},{"publisher":"Wiley-Blackwell","volume":63,"publication":"Evolution","acknowledgement":"This work was funded by a Portuguese Foundation for Science and Technology scholarship to BV, and BC was supported by the Royal Society","year":"2009","type":"journal_article","extern":1,"abstract":[{"text":"Current models of X-linked and autosomal evolutionary rates often assume that the effective population size of the X chromosome (NeX) is equal to three-quarters of the autosomal population size (NeA). However, polymorphism studies of Drosophila melanogaster and D. simulans suggest that there are often significant deviations from this value. We have computed fixation rates of beneficial and deleterious mutations at X-linked and autosomal sites when this occurs. We find that NeX/NeA is a crucial parameter for the rates of evolution of X-linked sites compared to autosomal sites. Faster-X evolution due to the fixation of beneficial mutations can occur under a much wider range of levels of dominance when NeX/N eA &gt; 3/4. We also examined various parameters that are known to influence the rates of evolution at X-linked and autosomal sites, such as different mutation rates in males and females and mutations that are sexually antagonistic, to determine which cases can lead to faster-X evolution. We show that, when the rate of nonsynonymous evolution is normalized by the rate of neutral evolution, a sex difference in mutation rate has no influence on the conditions for faster-X evolution.","lang":"eng"}],"doi":"10.1111/j.1558-5646.2009.00719.x","day":"01","citation":{"short":"B. Vicoso, B. Charlesworth, Evolution 63 (2009) 2413–2426.","ieee":"B. Vicoso and B. Charlesworth, “Effective population size and the faster-X effect: An extended model,” <i>Evolution</i>, vol. 63, no. 9. Wiley-Blackwell, pp. 2413–2426, 2009.","ama":"Vicoso B, Charlesworth B. Effective population size and the faster-X effect: An extended model. <i>Evolution</i>. 2009;63(9):2413-2426. doi:<a href=\"https://doi.org/10.1111/j.1558-5646.2009.00719.x\">10.1111/j.1558-5646.2009.00719.x</a>","apa":"Vicoso, B., &#38; Charlesworth, B. (2009). Effective population size and the faster-X effect: An extended model. <i>Evolution</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/j.1558-5646.2009.00719.x\">https://doi.org/10.1111/j.1558-5646.2009.00719.x</a>","mla":"Vicoso, Beatriz, and Brian Charlesworth. “Effective Population Size and the Faster-X Effect: An Extended Model.” <i>Evolution</i>, vol. 63, no. 9, Wiley-Blackwell, 2009, pp. 2413–26, doi:<a href=\"https://doi.org/10.1111/j.1558-5646.2009.00719.x\">10.1111/j.1558-5646.2009.00719.x</a>.","chicago":"Vicoso, Beatriz, and Brian Charlesworth. “Effective Population Size and the Faster-X Effect: An Extended Model.” <i>Evolution</i>. Wiley-Blackwell, 2009. <a href=\"https://doi.org/10.1111/j.1558-5646.2009.00719.x\">https://doi.org/10.1111/j.1558-5646.2009.00719.x</a>.","ista":"Vicoso B, Charlesworth B. 2009. Effective population size and the faster-X effect: An extended model. Evolution. 63(9), 2413–2426."},"intvolume":"        63","quality_controlled":0,"date_published":"2009-09-01T00:00:00Z","status":"public","month":"09","issue":"9","title":"Effective population size and the faster-X effect: An extended model","author":[{"first_name":"Beatriz","last_name":"Vicoso","full_name":"Beatriz Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4579-8306"},{"first_name":"Brian","last_name":"Charlesworth","full_name":"Charlesworth, Brian"}],"date_updated":"2021-01-12T06:55:06Z","_id":"2069","page":"2413 - 2426","publication_status":"published","date_created":"2018-12-11T11:55:32Z","publist_id":"4968"},{"author":[{"first_name":"Beatriz","orcid":"0000-0002-4579-8306","full_name":"Beatriz Vicoso","last_name":"Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Doris","full_name":"Bachtrog, Doris","last_name":"Bachtrog"}],"title":"Progress and prospects toward our understanding of the evolution of dosage compensation","page":"585 - 602","_id":"2070","date_updated":"2021-01-12T06:55:07Z","status":"public","month":"07","issue":"5","publication_status":"published","publist_id":"4969","date_created":"2018-12-11T11:55:32Z","volume":17,"publication":"Chromosome Research","publisher":"Springer","citation":{"ieee":"B. Vicoso and D. Bachtrog, “Progress and prospects toward our understanding of the evolution of dosage compensation,” <i>Chromosome Research</i>, vol. 17, no. 5. Springer, pp. 585–602, 2009.","apa":"Vicoso, B., &#38; Bachtrog, D. (2009). Progress and prospects toward our understanding of the evolution of dosage compensation. <i>Chromosome Research</i>. Springer. <a href=\"https://doi.org/10.1007/s10577-009-9053-y\">https://doi.org/10.1007/s10577-009-9053-y</a>","ama":"Vicoso B, Bachtrog D. Progress and prospects toward our understanding of the evolution of dosage compensation. <i>Chromosome Research</i>. 2009;17(5):585-602. doi:<a href=\"https://doi.org/10.1007/s10577-009-9053-y\">10.1007/s10577-009-9053-y</a>","chicago":"Vicoso, Beatriz, and Doris Bachtrog. “Progress and Prospects toward Our Understanding of the Evolution of Dosage Compensation.” <i>Chromosome Research</i>. Springer, 2009. <a href=\"https://doi.org/10.1007/s10577-009-9053-y\">https://doi.org/10.1007/s10577-009-9053-y</a>.","ista":"Vicoso B, Bachtrog D. 2009. Progress and prospects toward our understanding of the evolution of dosage compensation. Chromosome Research. 17(5), 585–602.","mla":"Vicoso, Beatriz, and Doris Bachtrog. “Progress and Prospects toward Our Understanding of the Evolution of Dosage Compensation.” <i>Chromosome Research</i>, vol. 17, no. 5, Springer, 2009, pp. 585–602, doi:<a href=\"https://doi.org/10.1007/s10577-009-9053-y\">10.1007/s10577-009-9053-y</a>.","short":"B. Vicoso, D. Bachtrog, Chromosome Research 17 (2009) 585–602."},"abstract":[{"lang":"eng","text":"In many eukaryotic organisms, gender is determined by a pair of heteromorphic sex chromosomes. Degeneration of the non-recombining Y chromosome is a general facet of sex chromosome evolution. Selective pressure to restore expression levels of X-linked genes relative to autosomes accompanies Y-chromosome degeneration, thus driving the evolution of dosage compensation mechanisms. This review focuses on evolutionary aspects of dosage compensation, in light of recent advances in comparative and functional genomics that have substantially increased our understanding of the molecular mechanisms of dosage compensation and how it evolved. We review processes involved in sex chromosome evolution, and discuss the dynamic interaction between Y degeneration and the acquisition of dosage compensation. We compare mechanisms of dosage compensation and the origin of dosage compensation genes between different taxa and comment on sex chromosomes that apparently lack compensation mechanisms. Finally, we discuss how dosage compensation systems can also influence the evolution of well-established sex chromosomes."}],"type":"journal_article","extern":1,"doi":"10.1007/s10577-009-9053-y","day":"01","date_published":"2009-07-01T00:00:00Z","quality_controlled":0,"intvolume":"        17","year":"2009","acknowledgement":"This research is funded by NIH Grant GM076007 and a Sloan Research Fellowship and a David and Lucile Packard Fellowship to D.B."},{"date_published":"2009-10-23T00:00:00Z","intvolume":"       284","quality_controlled":0,"citation":{"apa":"Berrisford, J., &#38; Sazanov, L. A. (2009). Structural basis for the mechanism of respiratory complex I. <i>Journal of Biological Chemistry</i>. American Society for Biochemistry and Molecular Biology. <a href=\"https://doi.org/10.1074/jbc.M109.032144\">https://doi.org/10.1074/jbc.M109.032144</a>","ama":"Berrisford J, Sazanov LA. Structural basis for the mechanism of respiratory complex I. <i>Journal of Biological Chemistry</i>. 2009;284(43):29773-29783. doi:<a href=\"https://doi.org/10.1074/jbc.M109.032144\">10.1074/jbc.M109.032144</a>","ieee":"J. Berrisford and L. A. Sazanov, “Structural basis for the mechanism of respiratory complex I,” <i>Journal of Biological Chemistry</i>, vol. 284, no. 43. American Society for Biochemistry and Molecular Biology, pp. 29773–29783, 2009.","ista":"Berrisford J, Sazanov LA. 2009. Structural basis for the mechanism of respiratory complex I. Journal of Biological Chemistry. 284(43), 29773–29783.","chicago":"Berrisford, John, and Leonid A Sazanov. “Structural Basis for the Mechanism of Respiratory Complex I.” <i>Journal of Biological Chemistry</i>. American Society for Biochemistry and Molecular Biology, 2009. <a href=\"https://doi.org/10.1074/jbc.M109.032144\">https://doi.org/10.1074/jbc.M109.032144</a>.","mla":"Berrisford, John, and Leonid A. Sazanov. “Structural Basis for the Mechanism of Respiratory Complex I.” <i>Journal of Biological Chemistry</i>, vol. 284, no. 43, American Society for Biochemistry and Molecular Biology, 2009, pp. 29773–83, doi:<a href=\"https://doi.org/10.1074/jbc.M109.032144\">10.1074/jbc.M109.032144</a>.","short":"J. Berrisford, L.A. Sazanov, Journal of Biological Chemistry 284 (2009) 29773–29783."},"abstract":[{"lang":"eng","text":"Complex I plays a central role in cellular energy production, coupling electron transfer between NADH and quinone to proton translocation. The mechanism of this highly efficient enzyme is currently unknown. Mitochondrial complex I is a major source of reactive oxygen species, which may be one of the causes of aging. Dysfunction of complex I is implicated in many human neurodegenerative diseases. We have determined several x-ray structures of the oxidized and reduced hydrophilic domain of complex I from Thermus thermophilus at up to 3.1 Å resolution. The structures reveal the mode of interaction of complex I with NADH, explaining known kinetic data and providing implications for the mechanism of reactive oxygen species production at the flavin site of complex I. Bound metals were identified in the channel at the interface with the frataxin-like subunit Nqo15, indicating possible iron-binding sites. Conformational changes upon reduction of the complex involve adjustments in the nucleotide-binding pocket, as well as small but significant shifts of several α-helices at the interface with the membrane domain. These shifts are likely to be driven by the reduction of nearby iron-sulfur clusters N2 and N6a/b. Cluster N2 is the electron donor to quinone and is coordinated by unique motif involving two consecutive (tandem) cysteines. An unprecedented &quot;on/off switch&quot; (disconnection) of coordinating bonds between the tandem cysteines and this cluster was observed upon reduction. Comparison of the structures suggests a novel mechanism of coupling between electron transfer and proton translocation, combining conformational changes and protonation/deprotonation of tandem cysteines."}],"doi":"10.1074/jbc.M109.032144","day":"23","extern":1,"type":"journal_article","acknowledgement":"This work was supported by the Medical Research Council. ","year":"2009","publication":"Journal of Biological Chemistry","volume":284,"publisher":"American Society for Biochemistry and Molecular Biology","publist_id":"5114","date_created":"2018-12-11T11:54:59Z","publication_status":"published","date_updated":"2021-01-12T06:54:26Z","_id":"1971","page":"29773 - 29783","title":"Structural basis for the mechanism of respiratory complex I","author":[{"first_name":"John","last_name":"Berrisford","full_name":"Berrisford, John M"},{"first_name":"Leonid A","last_name":"Sazanov","full_name":"Leonid Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0977-7989"}],"issue":"43","month":"10","status":"public"},{"publication":"The Astrophysical Journal","volume":693,"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publisher":"IOP Publishing Ltd.","quality_controlled":"1","intvolume":"       693","date_published":"2009-03-10T00:00:00Z","type":"journal_article","abstract":[{"lang":"eng","text":"In order to better understand magnetic reconnection and particle acceleration in solar flares, we compare the RHESSI hard X-ray (HXR) footpoint motions of three flares with a detailed study of the corresponding topology given by a Magnetic Charge Topology model. We analyze the relationship between the footpoint motions and topological spine lines and find that the examined footpoint sources move along spine lines. We present a three-dimensional topological model in which this movement can be understood. As reconnection proceeds, flux is transferred between the reconnecting domains, causing the separator to move. The movement of the separator\\'s chromospheric ends, identified with the HXR footpoints, is along those spine lines on which the separator ends."}],"extern":"1","doi":"10.1088/0004-637X/693/2/1628","day":"10","citation":{"short":"A. Des Jardins, R. Canfield, D. Longcope, C. Fordyce, S.R. Waitukaitis, The Astrophysical Journal 693 (2009) 1628–1636.","ieee":"A. Des Jardins, R. Canfield, D. Longcope, C. Fordyce, and S. R. Waitukaitis, “Reconnection in three dimensions: The role of spines in three eruptive flares,” <i>The Astrophysical Journal</i>, vol. 693, no. 2. IOP Publishing Ltd., pp. 1628–1636, 2009.","ama":"Des Jardins A, Canfield R, Longcope D, Fordyce C, Waitukaitis SR. Reconnection in three dimensions: The role of spines in three eruptive flares. <i>The Astrophysical Journal</i>. 2009;693(2):1628-1636. doi:<a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">10.1088/0004-637X/693/2/1628</a>","apa":"Des Jardins, A., Canfield, R., Longcope, D., Fordyce, C., &#38; Waitukaitis, S. R. (2009). Reconnection in three dimensions: The role of spines in three eruptive flares. <i>The Astrophysical Journal</i>. IOP Publishing Ltd. <a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">https://doi.org/10.1088/0004-637X/693/2/1628</a>","mla":"Des Jardins, Angela, et al. “Reconnection in Three Dimensions: The Role of Spines in Three Eruptive Flares.” <i>The Astrophysical Journal</i>, vol. 693, no. 2, IOP Publishing Ltd., 2009, pp. 1628–36, doi:<a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">10.1088/0004-637X/693/2/1628</a>.","ista":"Des Jardins A, Canfield R, Longcope D, Fordyce C, Waitukaitis SR. 2009. Reconnection in three dimensions: The role of spines in three eruptive flares. The Astrophysical Journal. 693(2), 1628–1636.","chicago":"Des Jardins, Angela, Richard Canfield, Dana Longcope, Crystal Fordyce, and Scott R Waitukaitis. “Reconnection in Three Dimensions: The Role of Spines in Three Eruptive Flares.” <i>The Astrophysical Journal</i>. IOP Publishing Ltd., 2009. <a href=\"https://doi.org/10.1088/0004-637X/693/2/1628\">https://doi.org/10.1088/0004-637X/693/2/1628</a>."},"year":"2009","acknowledgement":"This work was supported by RHESSI funds from the University of California at Berkeley through a contract, SA1868-26308PG, with Montana State University. Funding for our Research Experience for Undergraduates (REU) students was provided by NSF grant ATM-0243923.","_id":"110","page":"1628 - 1636","date_updated":"2021-01-12T06:48:16Z","title":"Reconnection in three dimensions: The role of spines in three eruptive flares","author":[{"full_name":"Des Jardins, Angela","last_name":"Des Jardins","first_name":"Angela"},{"first_name":"Richard","last_name":"Canfield","full_name":"Canfield, Richard"},{"first_name":"Dana","last_name":"Longcope","full_name":"Longcope, Dana"},{"full_name":"Fordyce, Crystal","last_name":"Fordyce","first_name":"Crystal"},{"first_name":"Scott R","orcid":"0000-0002-2299-3176","last_name":"Waitukaitis","full_name":"Waitukaitis, Scott R","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87"}],"issue":"2","status":"public","language":[{"iso":"eng"}],"month":"03","date_created":"2018-12-11T11:44:41Z","oa_version":"None","publist_id":"7944","publication_status":"published"},{"publist_id":"7943","oa_version":"None","date_created":"2018-12-11T11:44:41Z","publication_status":"published","_id":"111","date_updated":"2021-01-12T06:48:21Z","page":"1110 - 1113","author":[{"first_name":"John","last_name":"Royer","full_name":"Royer, John"},{"full_name":"Evans, Daniel","last_name":"Evans","first_name":"Daniel"},{"last_name":"Oyarte","full_name":"Oyarte, Loreto","first_name":"Loreto"},{"first_name":"Qiti","last_name":"Guo","full_name":"Guo, Qiti"},{"full_name":"Kapit, Eliot","last_name":"Kapit","first_name":"Eliot"},{"full_name":"Möbius, Matthias","last_name":"Möbius","first_name":"Matthias"},{"last_name":"Waitukaitis","full_name":"Waitukaitis, Scott R","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2299-3176","first_name":"Scott R"},{"first_name":"Heinrich","full_name":"Jaeger, Heinrich","last_name":"Jaeger"}],"title":"High-speed tracking of rupture and clustering in freely falling granular streams","issue":"7250","status":"public","month":"06","language":[{"iso":"eng"}],"date_published":"2009-06-25T00:00:00Z","quality_controlled":"1","intvolume":"       459","citation":{"short":"J. Royer, D. Evans, L. Oyarte, Q. Guo, E. Kapit, M. Möbius, S.R. Waitukaitis, H. Jaeger, Nature 459 (2009) 1110–1113.","apa":"Royer, J., Evans, D., Oyarte, L., Guo, Q., Kapit, E., Möbius, M., … Jaeger, H. (2009). High-speed tracking of rupture and clustering in freely falling granular streams. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature08115\">https://doi.org/10.1038/nature08115</a>","ieee":"J. Royer <i>et al.</i>, “High-speed tracking of rupture and clustering in freely falling granular streams,” <i>Nature</i>, vol. 459, no. 7250. Nature Publishing Group, pp. 1110–1113, 2009.","ama":"Royer J, Evans D, Oyarte L, et al. High-speed tracking of rupture and clustering in freely falling granular streams. <i>Nature</i>. 2009;459(7250):1110-1113. doi:<a href=\"https://doi.org/10.1038/nature08115\">10.1038/nature08115</a>","mla":"Royer, John, et al. “High-Speed Tracking of Rupture and Clustering in Freely Falling Granular Streams.” <i>Nature</i>, vol. 459, no. 7250, Nature Publishing Group, 2009, pp. 1110–13, doi:<a href=\"https://doi.org/10.1038/nature08115\">10.1038/nature08115</a>.","chicago":"Royer, John, Daniel Evans, Loreto Oyarte, Qiti Guo, Eliot Kapit, Matthias Möbius, Scott R Waitukaitis, and Heinrich Jaeger. “High-Speed Tracking of Rupture and Clustering in Freely Falling Granular Streams.” <i>Nature</i>. Nature Publishing Group, 2009. <a href=\"https://doi.org/10.1038/nature08115\">https://doi.org/10.1038/nature08115</a>.","ista":"Royer J, Evans D, Oyarte L, Guo Q, Kapit E, Möbius M, Waitukaitis SR, Jaeger H. 2009. High-speed tracking of rupture and clustering in freely falling granular streams. Nature. 459(7250), 1110–1113."},"type":"journal_article","day":"25","doi":"10.1038/nature08115","abstract":[{"lang":"eng","text":"Thin streams of liquid commonly break up into characteristic droplet patterns owing to the surface-tension-driven PlateauRayleigh instability 1-3. Very similar patterns are observed when initially uniform streams of dry granular material break up into clusters of grains4-6, even though flows of macroscopic particles are considered to lack surface tension7,8. Recent studies on freely falling granular streams tracked fluctuations in the stream profile9, but the clustering mechanism remained unresolved because the full evolution of the instability could not be observed. Here we demonstrate that the cluster formation is driven by minute, nanoNewton cohesive forces that arise from a combination of van der Waals interactions and capillary bridges between nanometre-scale surface asperities. Our experiments involve high-speed video imaging of the granular stream in the co-moving frame, control over the properties of the grain surfaces and the use of atomic force microscopy to measure grain-grain interactions. The cohesive forces that we measure correspond to an equivalent surface tension five orders of magnitude below that, of ordinary liquids. We find that, the shapes of these weakly cohesive, non-thermal clusters of macroscopic particles closely resemble droplets resulting from thermally induced rupture of liquid nanojets 10-12."}],"extern":"1","year":"2009","acknowledgement":"This work was supported by NSF through its MRSEC programme and the Inter-American Materials Collaboration Chicago-Chile, and by the Keck Initiative for Ultrafast Imaging at the University of Chicago.","publication":"Nature","volume":459,"publisher":"Nature Publishing Group","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87"},{"status":"public","language":[{"iso":"eng"}],"article_processing_charge":"No","author":[{"first_name":"Martin W","last_name":"HETZER","full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X"},{"full_name":"Wente, Susan R.","last_name":"Wente","first_name":"Susan R."}],"title":"Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes","date_updated":"2024-10-14T11:28:25Z","page":"606-616","keyword":["Developmental Biology","Cell Biology","General Biochemistry","Genetics and Molecular Biology","Molecular Biology"],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"Developmental Cell","article_type":"review","publication_identifier":{"issn":["1534-5807"]},"year":"2009","oa":1,"day":"17","doi":"10.1016/j.devcel.2009.10.007","date_published":"2009-11-17T00:00:00Z","intvolume":"        17","month":"11","scopus_import":"1","issue":"5","_id":"11103","external_id":{"pmid":["19922866"]},"publication_status":"published","date_created":"2022-04-07T07:53:45Z","publisher":"Elsevier","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.devcel.2009.10.007"}],"volume":17,"citation":{"ama":"Hetzer M, Wente SR. Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes. <i>Developmental Cell</i>. 2009;17(5):606-616. doi:<a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">10.1016/j.devcel.2009.10.007</a>","ieee":"M. Hetzer and S. R. Wente, “Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes,” <i>Developmental Cell</i>, vol. 17, no. 5. Elsevier, pp. 606–616, 2009.","apa":"Hetzer, M., &#38; Wente, S. R. (2009). Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes. <i>Developmental Cell</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">https://doi.org/10.1016/j.devcel.2009.10.007</a>","mla":"Hetzer, Martin, and Susan R. Wente. “Border Control at the Nucleus: Biogenesis and Organization of the Nuclear Membrane and Pore Complexes.” <i>Developmental Cell</i>, vol. 17, no. 5, Elsevier, 2009, pp. 606–16, doi:<a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">10.1016/j.devcel.2009.10.007</a>.","ista":"Hetzer M, Wente SR. 2009. Border control at the nucleus: Biogenesis and organization of the nuclear membrane and pore complexes. Developmental Cell. 17(5), 606–616.","chicago":"Hetzer, Martin, and Susan R. Wente. “Border Control at the Nucleus: Biogenesis and Organization of the Nuclear Membrane and Pore Complexes.” <i>Developmental Cell</i>. Elsevier, 2009. <a href=\"https://doi.org/10.1016/j.devcel.2009.10.007\">https://doi.org/10.1016/j.devcel.2009.10.007</a>.","short":"M. Hetzer, S.R. Wente, Developmental Cell 17 (2009) 606–616."},"type":"journal_article","pmid":1,"abstract":[{"text":"Over the last decade, the nuclear envelope (NE) has emerged as a key component in the organization and function of the nuclear genome. As many as 100 different proteins are thought to specifically localize to this double membrane that separates the cytoplasm and the nucleoplasm of eukaryotic cells. Selective portals through the NE are formed at sites where the inner and outer nuclear membranes are fused, and the coincident assembly of ∼30 proteins into nuclear pore complexes occurs. These nuclear pore complexes are essential for the control of nucleocytoplasmic exchange. Many of the NE and nuclear pore proteins are thought to play crucial roles in gene regulation and thus are increasingly linked to human diseases.","lang":"eng"}],"extern":"1","quality_controlled":"1"}]