[{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2024-10-15T11:20:54Z","publication_status":"published","author":[{"last_name":"Bronstein","orcid":"0000-0001-9699-8730","first_name":"Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","full_name":"Bronstein, Alexander"},{"full_name":"Bronstein, Michael M.","first_name":"Michael M.","last_name":"Bronstein"}],"date_updated":"2024-11-18T10:18:28Z","conference":{"location":"Anchorage, AK, United States","start_date":"2008-06-23","end_date":"2008-06-28","name":"CVPR: Conference on Computer Vision and Pattern Recognition"},"language":[{"iso":"eng"}],"date_published":"2008-07-01T00:00:00Z","scopus_import":"1","quality_controlled":"1","abstract":[{"text":"Partial matching is probably one of the most challenging problems in nonrigid shape analysis. The problem consists of matching similar parts of shapes that are dissimilar on the whole and can assume different forms by undergoing nonrigid deformations. Conceptually, two shapes can be considered partially matching if they have significant similar parts, with the simplest definition of significance being the size of the parts. Thus, partial matching can be defined as a multicriterion optimization problem trying to simultaneously maximize the similarity and the size of these parts. In this paper, we propose a different definition of significance, taking into account the regularity of parts besides their size. The regularity term proposed here is similar to the spirit of the Mumford-Shah functional. Numerical experiments show that the regularized partial matching produces semantically better results compared to the non-regularized one.","lang":"eng"}],"status":"public","publication_identifier":{"isbn":["9781424423392"],"issn":["2160-7508"]},"extern":"1","month":"07","publication":"2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops","article_processing_charge":"No","doi":"10.1109/cvprw.2008.4563077","day":"01","publisher":"IEEE","title":"Not only size matters: Regularized partial matching of nonrigid shapes","type":"conference","year":"2008","citation":{"apa":"Bronstein, A. M., &#38; Bronstein, M. M. (2008). Not only size matters: Regularized partial matching of nonrigid shapes. In <i>2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops</i>. Anchorage, AK, United States: IEEE. <a href=\"https://doi.org/10.1109/cvprw.2008.4563077\">https://doi.org/10.1109/cvprw.2008.4563077</a>","mla":"Bronstein, Alex M., and Michael M. Bronstein. “Not Only Size Matters: Regularized Partial Matching of Nonrigid Shapes.” <i>2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops</i>, IEEE, 2008, doi:<a href=\"https://doi.org/10.1109/cvprw.2008.4563077\">10.1109/cvprw.2008.4563077</a>.","ista":"Bronstein AM, Bronstein MM. 2008. Not only size matters: Regularized partial matching of nonrigid shapes. 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops. CVPR: Conference on Computer Vision and Pattern Recognition.","ieee":"A. M. Bronstein and M. M. Bronstein, “Not only size matters: Regularized partial matching of nonrigid shapes,” in <i>2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops</i>, Anchorage, AK, United States, 2008.","short":"A.M. Bronstein, M.M. Bronstein, in:, 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, IEEE, 2008.","chicago":"Bronstein, Alex M., and Michael M. Bronstein. “Not Only Size Matters: Regularized Partial Matching of Nonrigid Shapes.” In <i>2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops</i>. IEEE, 2008. <a href=\"https://doi.org/10.1109/cvprw.2008.4563077\">https://doi.org/10.1109/cvprw.2008.4563077</a>.","ama":"Bronstein AM, Bronstein MM. Not only size matters: Regularized partial matching of nonrigid shapes. In: <i>2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops</i>. IEEE; 2008. doi:<a href=\"https://doi.org/10.1109/cvprw.2008.4563077\">10.1109/cvprw.2008.4563077</a>"},"_id":"18381","oa_version":"None"},{"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publication_status":"published","date_created":"2024-10-15T11:20:55Z","article_number":"104","author":[{"last_name":"Weber","full_name":"Weber, Ofir","first_name":"Ofir"},{"full_name":"Devir, Yohai S.","first_name":"Yohai S.","last_name":"Devir"},{"id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","full_name":"Bronstein, Alexander","first_name":"Alexander","orcid":"0000-0001-9699-8730","last_name":"Bronstein"},{"last_name":"Bronstein","full_name":"Bronstein, Michael M.","first_name":"Michael M."},{"full_name":"Kimmel, Ron","first_name":"Ron","last_name":"Kimmel"}],"date_updated":"2024-12-18T14:46:45Z","intvolume":"        27","abstract":[{"lang":"eng","text":"We present an efficient O(n) numerical algorithm for first-order approximation of geodesic distances on geometry images, where n is the number of points on the surface. The structure of our algorithm allows efficient implementation on parallel architectures. Two implementations on a SIMD processor and on a GPU are discussed. Numerical results demonstrate up to four orders of magnitude improvement in execution time compared to the state-of-the-art algorithms."}],"language":[{"iso":"eng"}],"scopus_import":"1","quality_controlled":"1","date_published":"2008-10-01T00:00:00Z","publication_identifier":{"issn":["0730-0301"],"eissn":["1557-7368"]},"status":"public","extern":"1","month":"10","publication":"ACM Transactions on Graphics","article_processing_charge":"No","publisher":"Association for Computing Machinery","doi":"10.1145/1409625.1409626","day":"01","title":"Parallel algorithms for approximation of distance maps on parametric surfaces","type":"journal_article","year":"2008","issue":"4","_id":"18431","citation":{"ama":"Weber O, Devir YS, Bronstein AM, Bronstein MM, Kimmel R. Parallel algorithms for approximation of distance maps on parametric surfaces. <i>ACM Transactions on Graphics</i>. 2008;27(4). doi:<a href=\"https://doi.org/10.1145/1409625.1409626\">10.1145/1409625.1409626</a>","chicago":"Weber, Ofir, Yohai S. Devir, Alex M. Bronstein, Michael M. Bronstein, and Ron Kimmel. “Parallel Algorithms for Approximation of Distance Maps on Parametric Surfaces.” <i>ACM Transactions on Graphics</i>. Association for Computing Machinery, 2008. <a href=\"https://doi.org/10.1145/1409625.1409626\">https://doi.org/10.1145/1409625.1409626</a>.","short":"O. Weber, Y.S. Devir, A.M. Bronstein, M.M. Bronstein, R. Kimmel, ACM Transactions on Graphics 27 (2008).","ista":"Weber O, Devir YS, Bronstein AM, Bronstein MM, Kimmel R. 2008. Parallel algorithms for approximation of distance maps on parametric surfaces. ACM Transactions on Graphics. 27(4), 104.","mla":"Weber, Ofir, et al. “Parallel Algorithms for Approximation of Distance Maps on Parametric Surfaces.” <i>ACM Transactions on Graphics</i>, vol. 27, no. 4, 104, Association for Computing Machinery, 2008, doi:<a href=\"https://doi.org/10.1145/1409625.1409626\">10.1145/1409625.1409626</a>.","apa":"Weber, O., Devir, Y. S., Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2008). Parallel algorithms for approximation of distance maps on parametric surfaces. <i>ACM Transactions on Graphics</i>. Association for Computing Machinery. <a href=\"https://doi.org/10.1145/1409625.1409626\">https://doi.org/10.1145/1409625.1409626</a>","ieee":"O. Weber, Y. S. Devir, A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “Parallel algorithms for approximation of distance maps on parametric surfaces,” <i>ACM Transactions on Graphics</i>, vol. 27, no. 4. Association for Computing Machinery, 2008."},"volume":27,"oa_version":"None"},{"publication":"Hydrological Processes","extern":"1","volume":22,"citation":{"ama":"Pellicciotti F, Helbing J, Rivera A, et al. A study of the energy balance and melt regime on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt models of different complexity. <i>Hydrological Processes</i>. 2008;22(19):3980-3997. doi:<a href=\"https://doi.org/10.1002/hyp.7085\">10.1002/hyp.7085</a>","chicago":"Pellicciotti, Francesca, Jakob Helbing, Andrés Rivera, Vincent Favier, Javier Corripio, José Araos, Jean-Emmanuel Sicart, and Marco Carenzo. “A Study of the Energy Balance and Melt Regime on Juncal Norte Glacier, Semi-Arid Andes of Central Chile, Using Melt Models of Different Complexity.” <i>Hydrological Processes</i>. Wiley, 2008. <a href=\"https://doi.org/10.1002/hyp.7085\">https://doi.org/10.1002/hyp.7085</a>.","short":"F. Pellicciotti, J. Helbing, A. Rivera, V. Favier, J. Corripio, J. Araos, J.-E. Sicart, M. Carenzo, Hydrological Processes 22 (2008) 3980–3997.","apa":"Pellicciotti, F., Helbing, J., Rivera, A., Favier, V., Corripio, J., Araos, J., … Carenzo, M. (2008). A study of the energy balance and melt regime on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt models of different complexity. <i>Hydrological Processes</i>. Wiley. <a href=\"https://doi.org/10.1002/hyp.7085\">https://doi.org/10.1002/hyp.7085</a>","ista":"Pellicciotti F, Helbing J, Rivera A, Favier V, Corripio J, Araos J, Sicart J-E, Carenzo M. 2008. A study of the energy balance and melt regime on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt models of different complexity. Hydrological Processes. 22(19), 3980–3997.","mla":"Pellicciotti, Francesca, et al. “A Study of the Energy Balance and Melt Regime on Juncal Norte Glacier, Semi-Arid Andes of Central Chile, Using Melt Models of Different Complexity.” <i>Hydrological Processes</i>, vol. 22, no. 19, Wiley, 2008, pp. 3980–97, doi:<a href=\"https://doi.org/10.1002/hyp.7085\">10.1002/hyp.7085</a>.","ieee":"F. Pellicciotti <i>et al.</i>, “A study of the energy balance and melt regime on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt models of different complexity,” <i>Hydrological Processes</i>, vol. 22, no. 19. Wiley, pp. 3980–3997, 2008."},"type":"journal_article","page":"3980-3997","day":"15","publisher":"Wiley","doi":"10.1002/hyp.7085","date_created":"2023-02-20T08:18:45Z","publication_identifier":{"eissn":["1099-1085"],"issn":["0885-6087"]},"intvolume":"        22","quality_controlled":"1","language":[{"iso":"eng"}],"date_updated":"2024-10-14T12:00:17Z","article_processing_charge":"No","month":"09","oa_version":"None","year":"2008","issue":"19","_id":"12656","title":"A study of the energy balance and melt regime on Juncal Norte Glacier, semi-arid Andes of central Chile, using melt models of different complexity","keyword":["Water Science and Technology"],"author":[{"last_name":"Pellicciotti","orcid":"0000-0002-5554-8087","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"},{"first_name":"Jakob","full_name":"Helbing, Jakob","last_name":"Helbing"},{"full_name":"Rivera, Andrés","first_name":"Andrés","last_name":"Rivera"},{"last_name":"Favier","full_name":"Favier, Vincent","first_name":"Vincent"},{"first_name":"Javier","full_name":"Corripio, Javier","last_name":"Corripio"},{"last_name":"Araos","full_name":"Araos, José","first_name":"José"},{"first_name":"Jean-Emmanuel","full_name":"Sicart, Jean-Emmanuel","last_name":"Sicart"},{"first_name":"Marco","full_name":"Carenzo, Marco","last_name":"Carenzo"}],"article_type":"original","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","scopus_import":"1","abstract":[{"lang":"eng","text":"We use meteorological data from two automatic weather stations (AWS) on Juncal Norte Glacier, central Chile, to investigate the glacier–climate interaction and to test ablation models of different complexity. The semi-arid Central Andes are characterized by dry summers, with precipitation close to zero, low relative humidity and intense solar radiation. We show that katabatic forcing is dominant both on the glacier tongue and in the fore field, and that low humidity and absence of clouds cause strong radiative cooling of the glacier surface. Surface albedo is basically constant for snow and ice, because of the scarcity of solid precipitation. The energy balance of the glacier is simulated for a 2-month period in austral summer using two models of different complexity, which differ in the inclusion of the heat conduction flux into the snowpack and in the parameterization of the incoming longwave radiation. Net shortwave radiation is the dominant component of the energy balance. The sensible heat flux is always positive, while both the net longwave radiation and latent heat flux are negative. Neglecting the subsurface heat flux and corresponding variations in surface temperature leads to an overestimation of ablation of 2% over a total of 3695 mm water equivalent (w.e.) at the end of the season. Correct modelling of incoming longwave radiation is crucial, and we suggest that parameterizations based on vapour pressure and air temperature should be used rather than on computed cloud amount. We also used an enhanced temperature-index model incorporating the shortwave radiation flux, which has two empirical parameters. We apply it both with values of parameters obtained for Alpine glaciers and recalibrated on Juncal Norte. The model recalibrated against the correct energy balance simulations performs very well. The model parameters respond to the meteorological conditions typical of this climatic setting."}],"date_published":"2008-09-15T00:00:00Z"},{"author":[{"full_name":"Maximilian Jösch","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","first_name":"Maximilian A","last_name":"Jösch","orcid":"0000-0002-3937-1330"},{"first_name":"Johannes","full_name":"Plett, Johannes","last_name":"Plett"},{"first_name":"Alexander","full_name":"Borst, Alexander","last_name":"Borst"},{"full_name":"Reiff, Dierk F","first_name":"Dierk","last_name":"Reiff"}],"date_created":"2018-12-11T11:51:13Z","publication_status":"published","status":"public","quality_controlled":0,"abstract":[{"lang":"eng","text":"The crystalline-like structure of the optic lobes of the fruit fly Drosophila melanogaster has made them a model system for the study of neuronal cell-fate determination, axonal path finding, and target selection. For functional studies, however, the small size of the constituting visual interneurons has so far presented a formidable barrier. We have overcome this problem by establishing in vivo whole-cell recordings [1] from genetically targeted visual interneurons of Drosophila. Here, we describe the response properties of six motion-sensitive large-field neurons in the lobula plate that form a network consisting of individually identifiable, directionally selective cells most sensitive to vertical image motion (VS cells [2, 3]). Individual VS cell responses to visual motion stimuli exhibit all the characteristics that are indicative of presynaptic input from elementary motion detectors of the correlation type [4, 5]. Different VS cells possess distinct receptive fields that are arranged sequentially along the eye's azimuth, corresponding to their characteristic cellular morphology and position within the retinotopically organized lobula plate. In addition, lateral connections between individual VS cells cause strongly overlapping receptive fields that are wider than expected from their dendritic input. Our results suggest that motion vision in different dipteran fly species is accomplished in similar circuitries and according to common algorithmic rules. The underlying neural mechanisms of population coding within the VS cell network and of elementary motion detection, respectively, can now be analyzed by the combination of electrophysiology and genetic intervention in Drosophila."}],"date_published":"2008-03-11T00:00:00Z","intvolume":"        18","acknowledgement":"This work was supported by the Max-Planck-Society and by a Human Frontier Science Program (HFSP) grant to K. Ito, A.B., and B. Nelson.","date_updated":"2021-01-12T06:49:42Z","publication":"Current Biology","publist_id":"5973","month":"03","extern":1,"volume":18,"_id":"1296","issue":"5","citation":{"short":"M.A. Jösch, J. Plett, A. Borst, D. Reiff, Current Biology 18 (2008) 368–374.","ieee":"M. A. Jösch, J. Plett, A. Borst, and D. Reiff, “Response properties of motion sensitive visual interneurons in the Lobula plate of Drosophila melanogaster,” <i>Current Biology</i>, vol. 18, no. 5. Cell Press, pp. 368–374, 2008.","mla":"Jösch, Maximilian A., et al. “Response Properties of Motion Sensitive Visual Interneurons in the Lobula Plate of Drosophila Melanogaster.” <i>Current Biology</i>, vol. 18, no. 5, Cell Press, 2008, pp. 368–74, doi:<a href=\"https://doi.org/10.1016/j.cub.2008.02.022\">10.1016/j.cub.2008.02.022</a>.","ista":"Jösch MA, Plett J, Borst A, Reiff D. 2008. Response properties of motion sensitive visual interneurons in the Lobula plate of Drosophila melanogaster. Current Biology. 18(5), 368–374.","apa":"Jösch, M. A., Plett, J., Borst, A., &#38; Reiff, D. (2008). Response properties of motion sensitive visual interneurons in the Lobula plate of Drosophila melanogaster. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2008.02.022\">https://doi.org/10.1016/j.cub.2008.02.022</a>","ama":"Jösch MA, Plett J, Borst A, Reiff D. Response properties of motion sensitive visual interneurons in the Lobula plate of Drosophila melanogaster. <i>Current Biology</i>. 2008;18(5):368-374. doi:<a href=\"https://doi.org/10.1016/j.cub.2008.02.022\">10.1016/j.cub.2008.02.022</a>","chicago":"Jösch, Maximilian A, Johannes Plett, Alexander Borst, and Dierk Reiff. “Response Properties of Motion Sensitive Visual Interneurons in the Lobula Plate of Drosophila Melanogaster.” <i>Current Biology</i>. Cell Press, 2008. <a href=\"https://doi.org/10.1016/j.cub.2008.02.022\">https://doi.org/10.1016/j.cub.2008.02.022</a>."},"year":"2008","type":"journal_article","title":"Response properties of motion sensitive visual interneurons in the Lobula plate of Drosophila melanogaster","day":"11","doi":"10.1016/j.cub.2008.02.022","publisher":"Cell Press","page":"368 - 374"},{"_id":"1982","issue":"5877","citation":{"ista":"Loose M, Fischer Friedrich E, Ries J, Kruse K, Schwille P. 2008. Spatial regulators for bacterial cell division self-organize into surface waves in vitro. Science. 320(5877), 789–792.","apa":"Loose, M., Fischer Friedrich, E., Ries, J., Kruse, K., &#38; Schwille, P. (2008). Spatial regulators for bacterial cell division self-organize into surface waves in vitro. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1154413\">https://doi.org/10.1126/science.1154413</a>","mla":"Loose, Martin, et al. “Spatial Regulators for Bacterial Cell Division Self-Organize into Surface Waves in Vitro.” <i>Science</i>, vol. 320, no. 5877, American Association for the Advancement of Science, 2008, pp. 789–92, doi:<a href=\"https://doi.org/10.1126/science.1154413\">10.1126/science.1154413</a>.","ieee":"M. Loose, E. Fischer Friedrich, J. Ries, K. Kruse, and P. Schwille, “Spatial regulators for bacterial cell division self-organize into surface waves in vitro,” <i>Science</i>, vol. 320, no. 5877. American Association for the Advancement of Science, pp. 789–792, 2008.","short":"M. Loose, E. Fischer Friedrich, J. Ries, K. Kruse, P. Schwille, Science 320 (2008) 789–792.","chicago":"Loose, Martin, Elisabeth Fischer Friedrich, Jonas Ries, Karsten Kruse, and Petra Schwille. “Spatial Regulators for Bacterial Cell Division Self-Organize into Surface Waves in Vitro.” <i>Science</i>. American Association for the Advancement of Science, 2008. <a href=\"https://doi.org/10.1126/science.1154413\">https://doi.org/10.1126/science.1154413</a>.","ama":"Loose M, Fischer Friedrich E, Ries J, Kruse K, Schwille P. Spatial regulators for bacterial cell division self-organize into surface waves in vitro. <i>Science</i>. 2008;320(5877):789-792. doi:<a href=\"https://doi.org/10.1126/science.1154413\">10.1126/science.1154413</a>"},"year":"2008","volume":320,"doi":"10.1126/science.1154413","day":"09","publisher":"American Association for the Advancement of Science","page":"789 - 792","type":"journal_article","title":"Spatial regulators for bacterial cell division self-organize into surface waves in vitro","publication":"Science","extern":1,"publist_id":"5101","month":"05","date_published":"2008-05-09T00:00:00Z","quality_controlled":0,"abstract":[{"lang":"eng","text":"In the bacterium Escherichia coli, the Min proteins oscillate between the cell poles to select the cell center as division site. This dynamic pattern has been proposed to arise by self-organization of these proteins, and several models have suggested a reaction-diffusion type mechanism. Here, we found that the Min proteins spontaneously formed planar surface waves on a flat membrane in vitro. The formation and maintenance of these patterns, which extended for hundreds of micrometers, required adenosine 5′-triphosphate (ATP), and they persisted for hours. We present a reaction-diffusion model of the MinD and MinE dynamics that accounts for our experimental observations and also captures the in vivo oscillations."}],"intvolume":"       320","status":"public","date_updated":"2021-01-12T06:54:30Z","acknowledgement":"This work was supported by the Max-Planck-Society (M.L., P.S., E.F.). ","date_created":"2018-12-11T11:55:02Z","publication_status":"published","author":[{"last_name":"Loose","orcid":"0000-0001-7309-9724","full_name":"Martin Loose","id":"462D4284-F248-11E8-B48F-1D18A9856A87","first_name":"Martin"},{"full_name":"Fischer-Friedrich, Elisabeth","first_name":"Elisabeth","last_name":"Fischer Friedrich"},{"last_name":"Ries","first_name":"Jonas","full_name":"Ries, Jonas "},{"full_name":"Kruse, Karsten","first_name":"Karsten","last_name":"Kruse"},{"last_name":"Schwille","first_name":"Petra","full_name":"Schwille, Petra "}]},{"title":"A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila","type":"journal_article","page":"421 - 431","doi":"10.1017/S0016672308009804","publisher":"Cambridge University Press","day":"01","volume":90,"year":"2008","citation":{"chicago":"Vicoso, Beatriz, Penelope Haddrill, and Brian Charlesworth. “A Multispecies Approach for Comparing Sequence Evolution of X-Linked and Autosomal Sites in Drosophila.” <i>Genetical Research</i>. Cambridge University Press, 2008. <a href=\"https://doi.org/10.1017/S0016672308009804\">https://doi.org/10.1017/S0016672308009804</a>.","ama":"Vicoso B, Haddrill P, Charlesworth B. A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila. <i>Genetical Research</i>. 2008;90(5):421-431. doi:<a href=\"https://doi.org/10.1017/S0016672308009804\">10.1017/S0016672308009804</a>","ieee":"B. Vicoso, P. Haddrill, and B. Charlesworth, “A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila,” <i>Genetical Research</i>, vol. 90, no. 5. Cambridge University Press, pp. 421–431, 2008.","apa":"Vicoso, B., Haddrill, P., &#38; Charlesworth, B. (2008). A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila. <i>Genetical Research</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/S0016672308009804\">https://doi.org/10.1017/S0016672308009804</a>","mla":"Vicoso, Beatriz, et al. “A Multispecies Approach for Comparing Sequence Evolution of X-Linked and Autosomal Sites in Drosophila.” <i>Genetical Research</i>, vol. 90, no. 5, Cambridge University Press, 2008, pp. 421–31, doi:<a href=\"https://doi.org/10.1017/S0016672308009804\">10.1017/S0016672308009804</a>.","ista":"Vicoso B, Haddrill P, Charlesworth B. 2008. A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila. Genetical Research. 90(5), 421–431.","short":"B. Vicoso, P. Haddrill, B. Charlesworth, Genetical Research 90 (2008) 421–431."},"_id":"2065","issue":"5","publist_id":"4972","month":"10","extern":1,"publication":"Genetical Research","acknowledgement":"B.V. was supported by the Portuguese Foundation for Science and Technology, P.R.H. is supported by the Natural Environmental Research Council (UK) and B.C. was supported by the Royal Society (UK)","date_updated":"2021-01-12T06:55:05Z","status":"public","intvolume":"        90","quality_controlled":0,"abstract":[{"text":"Population genetics models show that, under certain conditions, the X chromosome is expected to be under more efficient selection than the autosomes. This could lead to 'faster-X evolution', if a large proportion of mutations are fixed by positive selection, as suggested by recent studies in Drosophila. We used a multispecies approach to test this: Muller's element D, an autosomal arm, is fused to the ancestral X chromosome in Drosophila pseudoobscura and its sister species, Drosophila affinis. We tested whether the same set of genes had higher rates of non-synonymous evolution when they were X-linked (in the D. pseudoobscura/D. affinis comparison) than when they were autosomal (in Drosophila melanogaster/Drosophila yakuba). Although not significant, our results suggest this may be the case, but only for genes under particularly strong positive selection/weak purifying selection. They also suggest that genes that have become X-linked have higher levels of codon bias and slower synonymous site evolution, consistent with more effective selection on codon usage at X-linked sites.","lang":"eng"}],"date_published":"2008-10-01T00:00:00Z","author":[{"full_name":"Beatriz Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","first_name":"Beatriz","orcid":"0000-0002-4579-8306","last_name":"Vicoso"},{"first_name":"Penelope","full_name":"Haddrill, Penelope R","last_name":"Haddrill"},{"last_name":"Charlesworth","full_name":"Charlesworth, Brian","first_name":"Brian"}],"publication_status":"published","date_created":"2018-12-11T11:55:30Z"},{"author":[{"orcid":"0000-0001-6511-9385","last_name":"Bickel","full_name":"Bickel, Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","first_name":"Bernd"},{"first_name":"Manuel","full_name":"Lang, Manuel","last_name":"Lang"},{"first_name":"Mario","full_name":"Botsch, Mario","last_name":"Botsch"},{"first_name":"Miguel","full_name":"Otaduy, Miguel","last_name":"Otaduy"},{"first_name":"Markus","full_name":"Gross, Markus","last_name":"Gross"}],"publication_status":"published","date_created":"2018-12-11T11:55:35Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","date_published":"2008-01-01T00:00:00Z","abstract":[{"text":"This paper presents a novel method for real-time animation of highly-detailed facial expressions based on a multi-scale decomposition of facial geometry into large-scale motion and fine-scale details, such as expression wrinkles. Our hybrid animation is tailored to the specific characteristics of large- and fine-scale facial deformations: Large-scale deformations are computed with a fast linear shell model, which is intuitively and accurately controlled through a sparse set of motion-capture markers or user-defined handle points. Fine-scale facial details are incorporated using a novel pose-space deformation technique, which learns the correspondence of sparse measurements of skin strain to wrinkle formation from a small set of example poses. Our hybrid method features real-time animation of highly-detailed faces with realistic wrinkle formation, and allows both large-scale deformations and fine-scale wrinkles to be edited intuitively. Furthermore, our pose-space representation enables the transfer of facial details to novel expressions or other facial models.","lang":"eng"}],"language":[{"iso":"eng"}],"acknowledgement":"This research was supported by the NCCR Co-Me of the Swiss National Science Foundation.","conference":{"name":"SIGGRAPH: Eurographics Symposium on Computer Animation"},"date_updated":"2021-01-12T06:55:10Z","publist_id":"4960","extern":"1","oa_version":"None","year":"2008","_id":"2078","citation":{"ieee":"B. Bickel, M. Lang, M. Botsch, M. Otaduy, and M. Gross, “Pose-space animation and transfer of facial details,” presented at the SIGGRAPH: Eurographics Symposium on Computer Animation, 2008, pp. 57–66.","mla":"Bickel, Bernd, et al. <i>Pose-Space Animation and Transfer of Facial Details</i>. ACM, 2008, pp. 57–66, doi:<a href=\"https://doi.org/10.2312/SCA/SCA08/057-066\">10.2312/SCA/SCA08/057-066</a>.","apa":"Bickel, B., Lang, M., Botsch, M., Otaduy, M., &#38; Gross, M. (2008). Pose-space animation and transfer of facial details (pp. 57–66). Presented at the SIGGRAPH: Eurographics Symposium on Computer Animation, ACM. <a href=\"https://doi.org/10.2312/SCA/SCA08/057-066\">https://doi.org/10.2312/SCA/SCA08/057-066</a>","ista":"Bickel B, Lang M, Botsch M, Otaduy M, Gross M. 2008. Pose-space animation and transfer of facial details. SIGGRAPH: Eurographics Symposium on Computer Animation, 57–66.","short":"B. Bickel, M. Lang, M. Botsch, M. Otaduy, M. Gross, in:, ACM, 2008, pp. 57–66.","chicago":"Bickel, Bernd, Manuel Lang, Mario Botsch, Miguel Otaduy, and Markus Gross. “Pose-Space Animation and Transfer of Facial Details,” 57–66. ACM, 2008. <a href=\"https://doi.org/10.2312/SCA/SCA08/057-066\">https://doi.org/10.2312/SCA/SCA08/057-066</a>.","ama":"Bickel B, Lang M, Botsch M, Otaduy M, Gross M. Pose-space animation and transfer of facial details. In: ACM; 2008:57-66. doi:<a href=\"https://doi.org/10.2312/SCA/SCA08/057-066\">10.2312/SCA/SCA08/057-066</a>"},"title":"Pose-space animation and transfer of facial details","type":"conference","page":"57  - 66","publisher":"ACM","doi":"10.2312/SCA/SCA08/057-066"},{"publist_id":"5115","month":"09","extern":1,"publication":"Biochemistry","title":"Chemical and NADH-induced, ROS-dependent, cross-linking between sublimits of complex I from Escherichia coli and Thermus thermophilus","type":"journal_article","page":"10262 - 10270","doi":"10.1021/bi801160u","publisher":"ACS","day":"30","volume":47,"year":"2008","citation":{"chicago":"Berrisford, John, Christopher Thompson, and Leonid A Sazanov. “Chemical and NADH-Induced, ROS-Dependent, Cross-Linking between Sublimits of Complex I from Escherichia Coli and Thermus Thermophilus.” <i>Biochemistry</i>. ACS, 2008. <a href=\"https://doi.org/10.1021/bi801160u\">https://doi.org/10.1021/bi801160u</a>.","ama":"Berrisford J, Thompson C, Sazanov LA. Chemical and NADH-induced, ROS-dependent, cross-linking between sublimits of complex I from Escherichia coli and Thermus thermophilus. <i>Biochemistry</i>. 2008;47(39):10262-10270. doi:<a href=\"https://doi.org/10.1021/bi801160u\">10.1021/bi801160u</a>","apa":"Berrisford, J., Thompson, C., &#38; Sazanov, L. A. (2008). Chemical and NADH-induced, ROS-dependent, cross-linking between sublimits of complex I from Escherichia coli and Thermus thermophilus. <i>Biochemistry</i>. ACS. <a href=\"https://doi.org/10.1021/bi801160u\">https://doi.org/10.1021/bi801160u</a>","ista":"Berrisford J, Thompson C, Sazanov LA. 2008. Chemical and NADH-induced, ROS-dependent, cross-linking between sublimits of complex I from Escherichia coli and Thermus thermophilus. Biochemistry. 47(39), 10262–10270.","mla":"Berrisford, John, et al. “Chemical and NADH-Induced, ROS-Dependent, Cross-Linking between Sublimits of Complex I from Escherichia Coli and Thermus Thermophilus.” <i>Biochemistry</i>, vol. 47, no. 39, ACS, 2008, pp. 10262–70, doi:<a href=\"https://doi.org/10.1021/bi801160u\">10.1021/bi801160u</a>.","ieee":"J. Berrisford, C. Thompson, and L. A. Sazanov, “Chemical and NADH-induced, ROS-dependent, cross-linking between sublimits of complex I from Escherichia coli and Thermus thermophilus,” <i>Biochemistry</i>, vol. 47, no. 39. ACS, pp. 10262–10270, 2008.","short":"J. Berrisford, C. Thompson, L.A. Sazanov, Biochemistry 47 (2008) 10262–10270."},"_id":"1967","issue":"39","author":[{"last_name":"Berrisford","first_name":"John","full_name":"Berrisford, John M"},{"first_name":"Christopher","full_name":"Thompson, Christopher J","last_name":"Thompson"},{"id":"338D39FE-F248-11E8-B48F-1D18A9856A87","full_name":"Leonid Sazanov","first_name":"Leonid A","last_name":"Sazanov","orcid":"0000-0002-0977-7989"}],"publication_status":"published","date_created":"2018-12-11T11:54:57Z","acknowledgement":"This research was funded by the Medical Research Council.","date_updated":"2021-01-12T06:54:24Z","status":"public","intvolume":"        47","abstract":[{"text":"Complex I of respiratory chains transfers electrons from NADH to ubiquinone, coupled to the translocation of protons across the membrane. Two alternative coupling mechanisms are being discussed, redox-driven or conformation-driven. Using &quot;zero-length&quot; cross-linking reagent and isolated hydrophilic domains of complex I from Escherichia coli and Thermus thermophilus, we show that the pattern of cross-links between subunits changes significantly in the presence of NADH. Similar observations were made previously with intact purified E. coli and bovine complex I. This indicates that, upon reduction with NADH, similar conformational changes are likely to occur in the intact enzyme and in the isolated hydrophilic domain (which can be used for crystallographic studies). Within intact E. coli complex I, the cross-link between the hydrophobic subunits NuoA and NuoJ was abolished in the presence of NADH, indicating that conformational changes extend into the membrane domain, possibly as part of a coupling mechanism. Unexpectedly, in the absence of any chemical cross-linker, incubation of complex I with NADH resulted in covalent cross-links between subunits Nqo4 (NuoCD) and Nqo6 (NuoB), as well as between Nqo6 and Nqo9. Their formation depends on the presence of oxygen and so is likely a result of oxidative damage via reactive oxygen species (ROS) induced cross-linking. In addition, ROS- and metal ion-dependent proteolysis of these subunits (as well as Nqo3) is observed. Fe-S cluster N2 is coordinated between subunits Nqo4 and Nqo6 and could be involved in these processes. Our observations suggest that oxidative damage to complex I in vivo may include not only side-chain modifications but also protein cross-linking and degradation.","lang":"eng"}],"quality_controlled":0,"date_published":"2008-09-30T00:00:00Z"},{"type":"journal_article","title":"Three-dimensional structure of respiratory complex I from Escherichia coli in ice in the presence of nucleotides","doi":"10.1016/j.bbabio.2008.03.023","publisher":"Elsevier","day":"01","page":"711 - 718","volume":1777,"_id":"1968","citation":{"ieee":"D. Morgan and L. A. Sazanov, “Three-dimensional structure of respiratory complex I from Escherichia coli in ice in the presence of nucleotides,” <i>Biochimica et Biophysica Acta - Bioenergetics</i>, vol. 1777, no. 7–8. Elsevier, pp. 711–718, 2008.","mla":"Morgan, David, and Leonid A. Sazanov. “Three-Dimensional Structure of Respiratory Complex I from Escherichia Coli in Ice in the Presence of Nucleotides.” <i>Biochimica et Biophysica Acta - Bioenergetics</i>, vol. 1777, no. 7–8, Elsevier, 2008, pp. 711–18, doi:<a href=\"https://doi.org/10.1016/j.bbabio.2008.03.023\">10.1016/j.bbabio.2008.03.023</a>.","ista":"Morgan D, Sazanov LA. 2008. Three-dimensional structure of respiratory complex I from Escherichia coli in ice in the presence of nucleotides. Biochimica et Biophysica Acta - Bioenergetics. 1777(7–8), 711–718.","apa":"Morgan, D., &#38; Sazanov, L. A. (2008). Three-dimensional structure of respiratory complex I from Escherichia coli in ice in the presence of nucleotides. <i>Biochimica et Biophysica Acta - Bioenergetics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.bbabio.2008.03.023\">https://doi.org/10.1016/j.bbabio.2008.03.023</a>","short":"D. Morgan, L.A. Sazanov, Biochimica et Biophysica Acta - Bioenergetics 1777 (2008) 711–718.","chicago":"Morgan, David, and Leonid A Sazanov. “Three-Dimensional Structure of Respiratory Complex I from Escherichia Coli in Ice in the Presence of Nucleotides.” <i>Biochimica et Biophysica Acta - Bioenergetics</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.bbabio.2008.03.023\">https://doi.org/10.1016/j.bbabio.2008.03.023</a>.","ama":"Morgan D, Sazanov LA. Three-dimensional structure of respiratory complex I from Escherichia coli in ice in the presence of nucleotides. <i>Biochimica et Biophysica Acta - Bioenergetics</i>. 2008;1777(7-8):711-718. doi:<a href=\"https://doi.org/10.1016/j.bbabio.2008.03.023\">10.1016/j.bbabio.2008.03.023</a>"},"issue":"7-8","year":"2008","publist_id":"5116","month":"07","extern":1,"publication":"Biochimica et Biophysica Acta - Bioenergetics","acknowledgement":"This work was supported by the Medical Research Council.","date_updated":"2021-01-12T06:54:24Z","status":"public","abstract":[{"text":"\n\nComplex I (NADH:ubiquinone oxidoreductase) is the largest protein complex of bacterial and mitochondrial respiratory chains. The first three-dimensional structure of bacterial complex I in vitrified ice was determined by electron cryo-microscopy and single particle analysis. The structure of the Escherichia coli enzyme incubated with either NAD+ (as a reference) or NADH was calculated to 35 and 39 Å resolution, respectively. The X-ray structure of the peripheral arm of Thermus thermophilus complex I was docked into the reference EM structure. The model obtained indicates that Fe-S cluster N2 is close to the membrane domain interface, allowing for effective electron transfer to membrane-embedded quinone. At the current resolution, the structures in the presence of NAD+ or NADH are similar. Additionally, side-view class averages were calculated for the negatively stained bovine enzyme. The structures of bovine complex I in the presence of either NAD+ or NADH also appeared to be similar. These observations indicate that conformational changes upon reduction with NADH, suggested to occur by a range of studies, are smaller than had been thought previously. The model of the entire bacterial complex I could be built from the crystal structures of subcomplexes using the EM envelope described here.","lang":"eng"}],"quality_controlled":0,"date_published":"2008-07-01T00:00:00Z","intvolume":"      1777","author":[{"last_name":"Morgan","first_name":"David","full_name":"Morgan, David J"},{"first_name":"Leonid A","full_name":"Leonid Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","last_name":"Sazanov","orcid":"0000-0002-0977-7989"}],"publication_status":"published","date_created":"2018-12-11T11:54:58Z"},{"volume":20,"citation":{"short":"U. Kutay, M. Hetzer, Current Opinion in Cell Biology 20 (2008) 669–677.","ieee":"U. Kutay and M. Hetzer, “Reorganization of the nuclear envelope during open mitosis,” <i>Current Opinion in Cell Biology</i>, vol. 20, no. 6. Elsevier, pp. 669–677, 2008.","ista":"Kutay U, Hetzer M. 2008. Reorganization of the nuclear envelope during open mitosis. Current Opinion in Cell Biology. 20(6), 669–677.","apa":"Kutay, U., &#38; Hetzer, M. (2008). Reorganization of the nuclear envelope during open mitosis. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">https://doi.org/10.1016/j.ceb.2008.09.010</a>","mla":"Kutay, Ulrike, and Martin Hetzer. “Reorganization of the Nuclear Envelope during Open Mitosis.” <i>Current Opinion in Cell Biology</i>, vol. 20, no. 6, Elsevier, 2008, pp. 669–77, doi:<a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">10.1016/j.ceb.2008.09.010</a>.","ama":"Kutay U, Hetzer M. Reorganization of the nuclear envelope during open mitosis. <i>Current Opinion in Cell Biology</i>. 2008;20(6):669-677. doi:<a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">10.1016/j.ceb.2008.09.010</a>","chicago":"Kutay, Ulrike, and Martin Hetzer. “Reorganization of the Nuclear Envelope during Open Mitosis.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.ceb.2008.09.010\">https://doi.org/10.1016/j.ceb.2008.09.010</a>."},"type":"journal_article","day":"01","publisher":"Elsevier","doi":"10.1016/j.ceb.2008.09.010","page":"669-677","publication":"Current Opinion in Cell Biology","extern":"1","publication_identifier":{"issn":["0955-0674"]},"language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"        20","external_id":{"pmid":["18938243"]},"date_updated":"2024-10-14T11:29:10Z","date_created":"2022-04-07T07:55:00Z","oa_version":"None","issue":"6","_id":"11109","year":"2008","keyword":["Cell Biology"],"title":"Reorganization of the nuclear envelope during open mitosis","article_processing_charge":"No","month":"12","pmid":1,"status":"public","date_published":"2008-12-01T00:00:00Z","abstract":[{"text":"The nuclear envelope (NE) provides a selective barrier between the nuclear interior and the cytoplasm and constitutes a central component of intracellular architecture. During mitosis in metazoa, the NE breaks down leading to the complete mixing of the nuclear content with the cytosol. Interestingly, many NE components actively participate in mitotic progression. After chromosome segregation, the NE is reassembled around decondensing chromatin and the nuclear compartment is reestablished in the daughter cells. Here, we summarize recent progress in deciphering the molecular mechanisms underlying NE dynamics during cell division.","lang":"eng"}],"scopus_import":"1","author":[{"last_name":"Kutay","first_name":"Ulrike","full_name":"Kutay, Ulrike"},{"full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","first_name":"Martin W","last_name":"HETZER","orcid":"0000-0002-2111-992X"}],"article_type":"original","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"pmid":1,"month":"10","article_processing_charge":"No","keyword":["Cell Biology"],"title":"Structure, dynamics and function of nuclear pore complexes","issue":"10","_id":"11110","year":"2008","oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"review","publication_status":"published","author":[{"first_name":"Maximiliano A.","full_name":"D’Angelo, Maximiliano A.","last_name":"D’Angelo"},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W","first_name":"Martin W","orcid":"0000-0002-2111-992X","last_name":"HETZER"}],"date_published":"2008-10-01T00:00:00Z","abstract":[{"lang":"eng","text":"Nuclear pore complexes are large aqueous channels that penetrate the nuclear envelope, thereby connecting the nuclear interior with the cytoplasm. Until recently, these macromolecular complexes were viewed as static structures, the only function of which was to control the molecular trafficking between the two compartments. It has now become evident that this simplistic scenario is inaccurate and that nuclear pore complexes are highly dynamic multiprotein assemblies involved in diverse cellular processes ranging from the organization of the cytoskeleton to gene expression. In this review, we discuss the most recent developments in the nuclear-pore-complex field, focusing on the assembly, disassembly, maintenance and function of this macromolecular structure."}],"scopus_import":"1","status":"public","extern":"1","publication":"Trends in Cell Biology","day":"01","doi":"10.1016/j.tcb.2008.07.009","publisher":"Elsevier","page":"456-466","type":"journal_article","citation":{"short":"M.A. D’Angelo, M. Hetzer, Trends in Cell Biology 18 (2008) 456–466.","ieee":"M. A. D’Angelo and M. Hetzer, “Structure, dynamics and function of nuclear pore complexes,” <i>Trends in Cell Biology</i>, vol. 18, no. 10. Elsevier, pp. 456–466, 2008.","mla":"D’Angelo, Maximiliano A., and Martin Hetzer. “Structure, Dynamics and Function of Nuclear Pore Complexes.” <i>Trends in Cell Biology</i>, vol. 18, no. 10, Elsevier, 2008, pp. 456–66, doi:<a href=\"https://doi.org/10.1016/j.tcb.2008.07.009\">10.1016/j.tcb.2008.07.009</a>.","ista":"D’Angelo MA, Hetzer M. 2008. Structure, dynamics and function of nuclear pore complexes. Trends in Cell Biology. 18(10), 456–466.","apa":"D’Angelo, M. A., &#38; Hetzer, M. (2008). Structure, dynamics and function of nuclear pore complexes. <i>Trends in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tcb.2008.07.009\">https://doi.org/10.1016/j.tcb.2008.07.009</a>","ama":"D’Angelo MA, Hetzer M. Structure, dynamics and function of nuclear pore complexes. <i>Trends in Cell Biology</i>. 2008;18(10):456-466. doi:<a href=\"https://doi.org/10.1016/j.tcb.2008.07.009\">10.1016/j.tcb.2008.07.009</a>","chicago":"D’Angelo, Maximiliano A., and Martin Hetzer. “Structure, Dynamics and Function of Nuclear Pore Complexes.” <i>Trends in Cell Biology</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.tcb.2008.07.009\">https://doi.org/10.1016/j.tcb.2008.07.009</a>."},"volume":18,"date_created":"2022-04-07T07:55:10Z","date_updated":"2024-10-14T11:29:21Z","external_id":{"pmid":["18786826"]},"quality_controlled":"1","language":[{"iso":"eng"}],"intvolume":"        18","publication_identifier":{"issn":["0962-8924"]}},{"volume":182,"citation":{"mla":"Anderson, Daniel J., and Martin Hetzer. “Reshaping of the Endoplasmic Reticulum Limits the Rate for Nuclear Envelope Formation.” <i>Journal of Cell Biology</i>, vol. 182, no. 5, Rockefeller University Press, 2008, pp. 911–24, doi:<a href=\"https://doi.org/10.1083/jcb.200805140\">10.1083/jcb.200805140</a>.","ista":"Anderson DJ, Hetzer M. 2008. Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation. Journal of Cell Biology. 182(5), 911–924.","apa":"Anderson, D. J., &#38; Hetzer, M. (2008). Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a href=\"https://doi.org/10.1083/jcb.200805140\">https://doi.org/10.1083/jcb.200805140</a>","ieee":"D. J. Anderson and M. Hetzer, “Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation,” <i>Journal of Cell Biology</i>, vol. 182, no. 5. Rockefeller University Press, pp. 911–924, 2008.","short":"D.J. Anderson, M. Hetzer, Journal of Cell Biology 182 (2008) 911–924.","chicago":"Anderson, Daniel J., and Martin Hetzer. “Reshaping of the Endoplasmic Reticulum Limits the Rate for Nuclear Envelope Formation.” <i>Journal of Cell Biology</i>. Rockefeller University Press, 2008. <a href=\"https://doi.org/10.1083/jcb.200805140\">https://doi.org/10.1083/jcb.200805140</a>.","ama":"Anderson DJ, Hetzer M. Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation. <i>Journal of Cell Biology</i>. 2008;182(5):911-924. doi:<a href=\"https://doi.org/10.1083/jcb.200805140\">10.1083/jcb.200805140</a>"},"type":"journal_article","page":"911-924","day":"08","doi":"10.1083/jcb.200805140","publisher":"Rockefeller University Press","publication":"Journal of Cell Biology","extern":"1","publication_identifier":{"issn":["0021-9525"],"eissn":["1540-8140"]},"intvolume":"       182","quality_controlled":"1","language":[{"iso":"eng"}],"external_id":{"pmid":["18779370"]},"date_updated":"2024-10-14T11:29:29Z","date_created":"2022-04-07T07:55:23Z","oa_version":"None","year":"2008","issue":"5","_id":"11111","title":"Reshaping of the endoplasmic reticulum limits the rate for nuclear envelope formation","keyword":["Cell Biology"],"article_processing_charge":"No","month":"09","pmid":1,"status":"public","abstract":[{"text":"During mitosis in metazoans, segregated chromosomes become enclosed by the nuclear envelope (NE), a double membrane that is continuous with the endoplasmic reticulum (ER). Recent in vitro data suggest that NE formation occurs by chromatin-mediated reorganization of the tubular ER; however, the basic principles of such a membrane-reshaping process remain uncharacterized. Here, we present a quantitative analysis of nuclear membrane assembly in mammalian cells using time-lapse microscopy. From the initial recruitment of ER tubules to chromatin, the formation of a membrane-enclosed, transport-competent nucleus occurs within ∼12 min. Overexpression of the ER tubule-forming proteins reticulon 3, reticulon 4, and DP1 inhibits NE formation and nuclear expansion, whereas their knockdown accelerates nuclear assembly. This suggests that the transition from membrane tubules to sheets is rate-limiting for nuclear assembly. Our results provide evidence that ER-shaping proteins are directly involved in the reconstruction of the nuclear compartment and that morphological restructuring of the ER is the principal mechanism of NE formation in vivo.","lang":"eng"}],"scopus_import":"1","date_published":"2008-09-08T00:00:00Z","author":[{"last_name":"Anderson","first_name":"Daniel J.","full_name":"Anderson, Daniel J."},{"last_name":"HETZER","orcid":"0000-0002-2111-992X","first_name":"Martin W","full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed"}],"article_type":"original","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"date_created":"2022-04-07T07:55:34Z","external_id":{"pmid":["18495454"]},"date_updated":"2024-10-14T11:29:38Z","publication_identifier":{"issn":["0955-0674"]},"quality_controlled":"1","language":[{"iso":"eng"}],"intvolume":"        20","extern":"1","publication":"Current Opinion in Cell Biology","type":"journal_article","doi":"10.1016/j.ceb.2008.03.016","day":"01","publisher":"Elsevier","page":"386-392","volume":20,"citation":{"ama":"Anderson DJ, Hetzer M. The life cycle of the metazoan nuclear envelope. <i>Current Opinion in Cell Biology</i>. 2008;20(4):386-392. doi:<a href=\"https://doi.org/10.1016/j.ceb.2008.03.016\">10.1016/j.ceb.2008.03.016</a>","chicago":"Anderson, Daniel J, and Martin Hetzer. “The Life Cycle of the Metazoan Nuclear Envelope.” <i>Current Opinion in Cell Biology</i>. Elsevier, 2008. <a href=\"https://doi.org/10.1016/j.ceb.2008.03.016\">https://doi.org/10.1016/j.ceb.2008.03.016</a>.","short":"D.J. Anderson, M. Hetzer, Current Opinion in Cell Biology 20 (2008) 386–392.","apa":"Anderson, D. J., &#38; Hetzer, M. (2008). The life cycle of the metazoan nuclear envelope. <i>Current Opinion in Cell Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ceb.2008.03.016\">https://doi.org/10.1016/j.ceb.2008.03.016</a>","mla":"Anderson, Daniel J., and Martin Hetzer. “The Life Cycle of the Metazoan Nuclear Envelope.” <i>Current Opinion in Cell Biology</i>, vol. 20, no. 4, Elsevier, 2008, pp. 386–92, doi:<a href=\"https://doi.org/10.1016/j.ceb.2008.03.016\">10.1016/j.ceb.2008.03.016</a>.","ista":"Anderson DJ, Hetzer M. 2008. The life cycle of the metazoan nuclear envelope. Current Opinion in Cell Biology. 20(4), 386–392.","ieee":"D. J. Anderson and M. Hetzer, “The life cycle of the metazoan nuclear envelope,” <i>Current Opinion in Cell Biology</i>, vol. 20, no. 4. Elsevier, pp. 386–392, 2008."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Anderson","first_name":"Daniel J","full_name":"Anderson, Daniel J"},{"last_name":"HETZER","orcid":"0000-0002-2111-992X","first_name":"Martin W","full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed"}],"publication_status":"published","article_type":"original","status":"public","scopus_import":"1","abstract":[{"text":"The nuclear envelope is a double-layered membrane that encloses the nuclear genome and transcriptional machinery. In dividing cells of metazoa, the nucleus completely disassembles during mitosis, creating the need to re-establish the nuclear compartment at the end of each cell division. Given the crucial role of the nuclear envelope in gene regulation and cellular organization, it is not surprising that its biogenesis and organization have become active research areas. We will review recent insights into nuclear membrane dynamics during the cell cycle.","lang":"eng"}],"date_published":"2008-08-01T00:00:00Z","month":"08","pmid":1,"article_processing_charge":"No","keyword":["Cell Biology"],"title":"The life cycle of the metazoan nuclear envelope","oa_version":"None","_id":"11112","issue":"4","year":"2008"},{"date_published":"2008-01-15T00:00:00Z","scopus_import":"1","abstract":[{"lang":"eng","text":"The nuclear envelope (NE), a double membrane enclosing the nucleus of eukaryotic cells, controls the flow of information between the nucleoplasm and the cytoplasm and provides a scaffold for the organization of chromatin and the cytoskeleton. In dividing metazoan cells, the NE breaks down at the onset of mitosis and then reforms around segregated chromosomes to generate the daughter nuclei. Recent data from intact cells and cell-free nuclear assembly systems suggest that the endoplasmic reticulum (ER) is the source of membrane for NE assembly. At the end of mitosis, ER membrane tubules are targeted to chromatin via tubule ends and reorganized into flat nuclear membrane sheets by specific DNA-binding membrane proteins. In contrast to previous models, which proposed vesicle fusion to be the principal mechanism of NE formation, these new studies suggest that the nuclear membrane forms by the chromatin-mediated reshaping of the ER."}],"status":"public","publication_status":"published","article_type":"letter_note","author":[{"full_name":"Anderson, Daniel J.","first_name":"Daniel J.","last_name":"Anderson"},{"orcid":"0000-0002-2111-992X","last_name":"HETZER","first_name":"Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"year":"2008","issue":"2","_id":"11113","oa_version":"Published Version","title":"Shaping the endoplasmic reticulum into the nuclear envelope","keyword":["Cell Biology"],"article_processing_charge":"No","pmid":1,"month":"01","intvolume":"       121","quality_controlled":"1","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0021-9533"],"eissn":["1477-9137"]},"date_updated":"2024-10-14T11:29:47Z","external_id":{"pmid":["18187447"]},"date_created":"2022-04-07T07:55:46Z","citation":{"ama":"Anderson DJ, Hetzer M. Shaping the endoplasmic reticulum into the nuclear envelope. <i>Journal of Cell Science</i>. 2008;121(2):137-142. doi:<a href=\"https://doi.org/10.1242/jcs.005777\">10.1242/jcs.005777</a>","chicago":"Anderson, Daniel J., and Martin Hetzer. “Shaping the Endoplasmic Reticulum into the Nuclear Envelope.” <i>Journal of Cell Science</i>. The Company of Biologists, 2008. <a href=\"https://doi.org/10.1242/jcs.005777\">https://doi.org/10.1242/jcs.005777</a>.","short":"D.J. Anderson, M. Hetzer, Journal of Cell Science 121 (2008) 137–142.","ista":"Anderson DJ, Hetzer M. 2008. Shaping the endoplasmic reticulum into the nuclear envelope. Journal of Cell Science. 121(2), 137–142.","mla":"Anderson, Daniel J., and Martin Hetzer. “Shaping the Endoplasmic Reticulum into the Nuclear Envelope.” <i>Journal of Cell Science</i>, vol. 121, no. 2, The Company of Biologists, 2008, pp. 137–42, doi:<a href=\"https://doi.org/10.1242/jcs.005777\">10.1242/jcs.005777</a>.","apa":"Anderson, D. J., &#38; Hetzer, M. (2008). Shaping the endoplasmic reticulum into the nuclear envelope. <i>Journal of Cell Science</i>. The Company of Biologists. <a href=\"https://doi.org/10.1242/jcs.005777\">https://doi.org/10.1242/jcs.005777</a>","ieee":"D. J. Anderson and M. Hetzer, “Shaping the endoplasmic reticulum into the nuclear envelope,” <i>Journal of Cell Science</i>, vol. 121, no. 2. The Company of Biologists, pp. 137–142, 2008."},"volume":121,"page":"137-142","publisher":"The Company of Biologists","day":"15","doi":"10.1242/jcs.005777","type":"journal_article","publication":"Journal of Cell Science","extern":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1242/jcs.005777"}]},{"article_processing_charge":"No","month":"04","pmid":1,"oa_version":"Published Version","issue":"4","_id":"11114","year":"2008","keyword":["Multidisciplinary"],"title":"Single bead affinity detection (SINBAD) for the analysis of protein-protein interactions","author":[{"first_name":"Roberta","full_name":"Schulte, Roberta","last_name":"Schulte"},{"first_name":"Jessica","full_name":"Talamas, Jessica","last_name":"Talamas"},{"last_name":"Doucet","first_name":"Christine","full_name":"Doucet, Christine"},{"full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","first_name":"Martin W","last_name":"HETZER","orcid":"0000-0002-2111-992X"}],"publication_status":"published","article_type":"original","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","scopus_import":"1","abstract":[{"text":"We present a miniaturized pull-down method for the detection of protein-protein interactions using standard affinity chromatography reagents. Binding events between different proteins, which are color-coded with quantum dots (QDs), are visualized on single affinity chromatography beads by fluorescence microscopy. The use of QDs for single molecule detection allows the simultaneous analysis of multiple protein-protein binding events and reduces the amount of time and material needed to perform a pull-down experiment.","lang":"eng"}],"date_published":"2008-04-30T00:00:00Z","publication":"PLoS ONE","main_file_link":[{"open_access":"1","url":" https://doi.org/10.1371/journal.pone.0002061"}],"extern":"1","volume":3,"citation":{"chicago":"Schulte, Roberta, Jessica Talamas, Christine Doucet, and Martin Hetzer. “Single Bead Affinity Detection (SINBAD) for the Analysis of Protein-Protein Interactions.” <i>PLoS ONE</i>. Public Library of Science, 2008. <a href=\"https://doi.org/10.1371/journal.pone.0002061\">https://doi.org/10.1371/journal.pone.0002061</a>.","ama":"Schulte R, Talamas J, Doucet C, Hetzer M. Single bead affinity detection (SINBAD) for the analysis of protein-protein interactions. <i>PLoS ONE</i>. 2008;3(4). doi:<a href=\"https://doi.org/10.1371/journal.pone.0002061\">10.1371/journal.pone.0002061</a>","mla":"Schulte, Roberta, et al. “Single Bead Affinity Detection (SINBAD) for the Analysis of Protein-Protein Interactions.” <i>PLoS ONE</i>, vol. 3, no. 4, e2061, Public Library of Science, 2008, doi:<a href=\"https://doi.org/10.1371/journal.pone.0002061\">10.1371/journal.pone.0002061</a>.","ista":"Schulte R, Talamas J, Doucet C, Hetzer M. 2008. Single bead affinity detection (SINBAD) for the analysis of protein-protein interactions. PLoS ONE. 3(4), e2061.","apa":"Schulte, R., Talamas, J., Doucet, C., &#38; Hetzer, M. (2008). Single bead affinity detection (SINBAD) for the analysis of protein-protein interactions. <i>PLoS ONE</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0002061\">https://doi.org/10.1371/journal.pone.0002061</a>","ieee":"R. Schulte, J. Talamas, C. Doucet, and M. Hetzer, “Single bead affinity detection (SINBAD) for the analysis of protein-protein interactions,” <i>PLoS ONE</i>, vol. 3, no. 4. Public Library of Science, 2008.","short":"R. Schulte, J. Talamas, C. Doucet, M. Hetzer, PLoS ONE 3 (2008)."},"type":"journal_article","publisher":"Public Library of Science","doi":"10.1371/journal.pone.0002061","day":"30","article_number":"e2061","date_created":"2022-04-07T07:55:57Z","publication_identifier":{"issn":["1932-6203"]},"quality_controlled":"1","language":[{"iso":"eng"}],"intvolume":"         3","external_id":{"pmid":["18446240"]},"date_updated":"2024-10-14T11:29:56Z"},{"date_updated":"2021-01-12T06:47:49Z","external_id":{"arxiv":["0710.5083"]},"intvolume":"       100","language":[{"iso":"eng"}],"date_created":"2018-12-11T11:49:48Z","day":"28","publisher":"American Physical Society","doi":"10.1103/PhysRevLett.100.080404","type":"journal_article","citation":{"ama":"Gustavsson M, Haller E, Mark M, Danzl JG, Rojas Kopeinig G, Nägerl H. Control of interaction-induced dephasing of bloch oscillations. <i>Physical Review Letters</i>. 2008;100(8). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">10.1103/PhysRevLett.100.080404</a>","chicago":"Gustavsson, Mattias, Elmar Haller, Manfred Mark, Johann G Danzl, Gabriel Rojas Kopeinig, and Hanns Nägerl. “Control of Interaction-Induced Dephasing of Bloch Oscillations.” <i>Physical Review Letters</i>. American Physical Society, 2008. <a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">https://doi.org/10.1103/PhysRevLett.100.080404</a>.","short":"M. Gustavsson, E. Haller, M. Mark, J.G. Danzl, G. Rojas Kopeinig, H. Nägerl, Physical Review Letters 100 (2008).","ieee":"M. Gustavsson, E. Haller, M. Mark, J. G. Danzl, G. Rojas Kopeinig, and H. Nägerl, “Control of interaction-induced dephasing of bloch oscillations,” <i>Physical Review Letters</i>, vol. 100, no. 8. American Physical Society, 2008.","apa":"Gustavsson, M., Haller, E., Mark, M., Danzl, J. G., Rojas Kopeinig, G., &#38; Nägerl, H. (2008). Control of interaction-induced dephasing of bloch oscillations. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">https://doi.org/10.1103/PhysRevLett.100.080404</a>","ista":"Gustavsson M, Haller E, Mark M, Danzl JG, Rojas Kopeinig G, Nägerl H. 2008. Control of interaction-induced dephasing of bloch oscillations. Physical Review Letters. 100(8).","mla":"Gustavsson, Mattias, et al. “Control of Interaction-Induced Dephasing of Bloch Oscillations.” <i>Physical Review Letters</i>, vol. 100, no. 8, American Physical Society, 2008, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.080404\">10.1103/PhysRevLett.100.080404</a>."},"volume":100,"extern":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/0710.5083"}],"publist_id":"6353","publication":"Physical Review Letters","acknowledgement":"We thank A. Daley for theoretical support and for help with\r\nsetting  up the  numerical  calculations  and  A. Buchleitner\r\nand  his  group  for  useful  discussions.  We  are  grateful  to\r\nA. Liem and H. Zellmer for valuable assistance in setting\r\nup the 1064 nm fiber amplifier system. We acknowledge\r\ncontributions  by  P.  Unterwaditzer  and  T.  Flir  during  the\r\nearly   stages   of   the   experiment.   We   are   indebted   to\r\nR.  Grimm  for  generous  support  and  gratefully  acknowledge  funding  by  the  Austrian  Ministry  of  Science  and\r\nResearch (BMWF) and the Austrian Science Fund (FWF).","arxiv":1,"date_published":"2008-02-28T00:00:00Z","abstract":[{"text":"We report on the control of interaction-induced dephasing of Bloch oscillations for an atomic Bose-Einstein condensate in an optical lattice. We quantify the dephasing in terms of the width of the quasimomentum distribution and measure its dependence on time for different interaction strengths which we control by means of a Feshbach resonance. For minimal interaction, the dephasing time is increased from a few to more than 20 thousand Bloch oscillation periods, allowing us to realize a BEC-based atom interferometer in the noninteracting limit.","lang":"eng"}],"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"publication_status":"published","author":[{"full_name":"Gustavsson, Mattias","first_name":"Mattias","last_name":"Gustavsson"},{"full_name":"Haller, Elmar","first_name":"Elmar","last_name":"Haller"},{"last_name":"Mark","first_name":"Manfred","full_name":"Mark, Manfred"},{"last_name":"Danzl","orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G"},{"full_name":"Rojas Kopeinig, Gabriel","first_name":"Gabriel","last_name":"Rojas Kopeinig"},{"full_name":"Nägerl, Hanns","first_name":"Hanns","last_name":"Nägerl"}],"title":"Control of interaction-induced dephasing of bloch oscillations","year":"2008","_id":"1036","issue":"8","oa_version":"None","month":"02","article_processing_charge":"No"},{"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/0710.4052"}],"extern":"1","publist_id":"6352","publication":"Physical Review Letters","day":"29","publisher":"American Physical Society","doi":"10.1103/PhysRevLett.100.083002","type":"journal_article","citation":{"short":"S. Knoop, M. Mark, F. Ferlaino, J.G. Danzl, T. Kraemer, H. Nägerl, R. Grimm, Physical Review Letters 100 (2008).","ieee":"S. Knoop <i>et al.</i>, “Metastable feshbach molecules in high rotational states,” <i>Physical Review Letters</i>, vol. 100, no. 8. American Physical Society, 2008.","mla":"Knoop, Steven, et al. “Metastable Feshbach Molecules in High Rotational States.” <i>Physical Review Letters</i>, vol. 100, no. 8, American Physical Society, 2008, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">10.1103/PhysRevLett.100.083002</a>.","apa":"Knoop, S., Mark, M., Ferlaino, F., Danzl, J. G., Kraemer, T., Nägerl, H., &#38; Grimm, R. (2008). Metastable feshbach molecules in high rotational states. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">https://doi.org/10.1103/PhysRevLett.100.083002</a>","ista":"Knoop S, Mark M, Ferlaino F, Danzl JG, Kraemer T, Nägerl H, Grimm R. 2008. Metastable feshbach molecules in high rotational states. Physical Review Letters. 100(8).","ama":"Knoop S, Mark M, Ferlaino F, et al. Metastable feshbach molecules in high rotational states. <i>Physical Review Letters</i>. 2008;100(8). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">10.1103/PhysRevLett.100.083002</a>","chicago":"Knoop, Steven, Michael Mark, Francesca Ferlaino, Johann G Danzl, Tobias Kraemer, Hanns Nägerl, and Rudolf Grimm. “Metastable Feshbach Molecules in High Rotational States.” <i>Physical Review Letters</i>. American Physical Society, 2008. <a href=\"https://doi.org/10.1103/PhysRevLett.100.083002\">https://doi.org/10.1103/PhysRevLett.100.083002</a>."},"volume":100,"date_created":"2018-12-11T11:49:49Z","date_updated":"2021-01-12T06:47:50Z","external_id":{"arxiv":["0710.4052"]},"language":[{"iso":"eng"}],"intvolume":"       100","month":"02","article_processing_charge":"No","title":"Metastable feshbach molecules in high rotational states","issue":"8","_id":"1037","year":"2008","oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"publication_status":"published","author":[{"first_name":"Steven","full_name":"Knoop, Steven","last_name":"Knoop"},{"last_name":"Mark","first_name":"Michael","full_name":"Mark, Michael"},{"first_name":"Francesca","full_name":"Ferlaino, Francesca","last_name":"Ferlaino"},{"first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","last_name":"Danzl","orcid":"0000-0001-8559-3973"},{"first_name":"Tobias","full_name":"Kraemer, Tobias","last_name":"Kraemer"},{"last_name":"Nägerl","first_name":"Hanns","full_name":"Nägerl, Hanns"},{"first_name":"Rudolf","full_name":"Grimm, Rudolf","last_name":"Grimm"}],"arxiv":1,"acknowledgement":"We thank S. Du ̈rr and T. Volz for fruitful discussions. We acknowledge support by the Austrian Science Fund (FWF) within No. SFB 15 (project part 16). S.K. is supported within the Marie Curie Intra-European Program of the European Commission. F.F. is supported within the Lise Meitner program of the FWF.","abstract":[{"text":"We experimentally demonstrate Cs2 Feshbach molecules well above the dissociation threshold, which are stable against spontaneous decay on the time scale of 1s. An optically trapped sample of ultracold dimers is prepared in a high rotational state and magnetically tuned into a region with a negative binding energy. The metastable character of these molecules arises from the large centrifugal barrier in combination with negligible coupling to states with low rotational angular momentum. A sharp onset of dissociation with increasing magnetic field is mediated by a crossing with a lower rotational dimer state and facilitates dissociation on demand with a well-defined energy.","lang":"eng"}],"date_published":"2008-02-29T00:00:00Z","status":"public"},{"publication_status":"published","author":[{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G","first_name":"Johann G","orcid":"0000-0001-8559-3973","last_name":"Danzl"},{"last_name":"Haller","full_name":"Haller, Elmar","first_name":"Elmar"},{"last_name":"Gustavsson","first_name":"Mattias","full_name":"Gustavsson, Mattias"},{"last_name":"Mark","full_name":"Mark, Manfred","first_name":"Manfred"},{"last_name":"Hart","full_name":"Hart, Russell","first_name":"Russell"},{"full_name":"Bouloufa, Nadia","first_name":"Nadia","last_name":"Bouloufa"},{"full_name":"Dulieu, Olivier","first_name":"Olivier","last_name":"Dulieu"},{"first_name":"Helmut","full_name":"Ritsch, Helmut","last_name":"Ritsch"},{"last_name":"Nägerl","first_name":"Hanns","full_name":"Nägerl, Hanns"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"date_published":"2008-08-22T00:00:00Z","abstract":[{"lang":"eng","text":"Molecular cooling techniques face the hurdle of dissipating translational as well as internal energy in the presence of a rich electronic, vibrational, and rotational energy spectrum. In our experiment, we create a translationally ultracold, dense quantum gas of molecules bound by more than 1000 wave numbers in the electronic ground state. Specifically, we stimulate with 80% efficiency, a two-photon transfer of molecules associated on a Feshbach resonance from a Bose-Einstein condensate of cesium atoms. In the process, the initial loose, long-range electrostatic bond of the Feshbach molecule is coherently transformed into a tight chemical bond. We demonstrate coherence of the transfer in a Ramsey-type experiment and show that the molecular sample is not heated during the transfer. Our results show that the preparation of a quantum gas of molecules in specific rovibrational states is possible and that the creation of a Bose-Einstein condensate of molecules in their rovibronic ground state is within reach."}],"status":"public","arxiv":1,"acknowledgement":" We thank the team of J. Hecker Denschlag, the LevT team in our group, and T. Bergeman for very helpful discussions and M. Prevedelli for technical assistance. We are indebted to R. Grimm for generous support and gratefully acknowledge funding by the Austrian Ministry of Science and Research (Bundesministerium für Wissenschaft und Forschung) and the Austrian Science Fund (Fonds zur Förderung der wissenschaftlichen Forschung) in the form of a START prize grant and by the European Science Foundation in the framework of the EuroQUAM collective research project QuDipMol.\r\n","article_processing_charge":"No","month":"08","issue":"5892","_id":"1039","year":"2008","oa_version":"None","title":"Quantum gas of deeply bound ground state molecules","date_created":"2018-12-11T11:49:49Z","language":[{"iso":"eng"}],"intvolume":"       321","date_updated":"2021-01-12T06:47:50Z","external_id":{"arxiv":["0806.2284"]},"publication":"Science","main_file_link":[{"url":"https://arxiv.org/abs/0806.2284","open_access":"1"}],"extern":"1","publist_id":"6351","citation":{"chicago":"Danzl, Johann G, Elmar Haller, Mattias Gustavsson, Manfred Mark, Russell Hart, Nadia Bouloufa, Olivier Dulieu, Helmut Ritsch, and Hanns Nägerl. “Quantum Gas of Deeply Bound Ground State Molecules.” <i>Science</i>. American Association for the Advancement of Science, 2008. <a href=\"https://doi.org/10.1126/science.1159909\">https://doi.org/10.1126/science.1159909</a>.","ama":"Danzl JG, Haller E, Gustavsson M, et al. Quantum gas of deeply bound ground state molecules. <i>Science</i>. 2008;321(5892):1062-1066. doi:<a href=\"https://doi.org/10.1126/science.1159909\">10.1126/science.1159909</a>","apa":"Danzl, J. G., Haller, E., Gustavsson, M., Mark, M., Hart, R., Bouloufa, N., … Nägerl, H. (2008). Quantum gas of deeply bound ground state molecules. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1159909\">https://doi.org/10.1126/science.1159909</a>","mla":"Danzl, Johann G., et al. “Quantum Gas of Deeply Bound Ground State Molecules.” <i>Science</i>, vol. 321, no. 5892, American Association for the Advancement of Science, 2008, pp. 1062–66, doi:<a href=\"https://doi.org/10.1126/science.1159909\">10.1126/science.1159909</a>.","ista":"Danzl JG, Haller E, Gustavsson M, Mark M, Hart R, Bouloufa N, Dulieu O, Ritsch H, Nägerl H. 2008. Quantum gas of deeply bound ground state molecules. Science. 321(5892), 1062–1066.","ieee":"J. G. Danzl <i>et al.</i>, “Quantum gas of deeply bound ground state molecules,” <i>Science</i>, vol. 321, no. 5892. American Association for the Advancement of Science, pp. 1062–1066, 2008.","short":"J.G. Danzl, E. Haller, M. Gustavsson, M. Mark, R. Hart, N. Bouloufa, O. Dulieu, H. Ritsch, H. Nägerl, Science 321 (2008) 1062–1066."},"volume":321,"day":"22","publisher":"American Association for the Advancement of Science","doi":"10.1126/science.1159909","page":"1062 - 1066","type":"journal_article"},{"doi":"10.1021/om700916f","publisher":"American Chemical Society","day":"15","page":"394-401","type":"journal_article","citation":{"ama":"Šarić A, Vrček V, Bühl M. Density functional study of protonated formylmetallocenes. <i>Organometallics</i>. 2008;27(3):394-401. doi:<a href=\"https://doi.org/10.1021/om700916f\">10.1021/om700916f</a>","chicago":"Šarić, Anđela, Valerije Vrček, and Michael Bühl. “Density Functional Study of Protonated Formylmetallocenes.” <i>Organometallics</i>. American Chemical Society, 2008. <a href=\"https://doi.org/10.1021/om700916f\">https://doi.org/10.1021/om700916f</a>.","short":"A. Šarić, V. Vrček, M. Bühl, Organometallics 27 (2008) 394–401.","ieee":"A. Šarić, V. Vrček, and M. Bühl, “Density functional study of protonated formylmetallocenes,” <i>Organometallics</i>, vol. 27, no. 3. American Chemical Society, pp. 394–401, 2008.","mla":"Šarić, Anđela, et al. “Density Functional Study of Protonated Formylmetallocenes.” <i>Organometallics</i>, vol. 27, no. 3, American Chemical Society, 2008, pp. 394–401, doi:<a href=\"https://doi.org/10.1021/om700916f\">10.1021/om700916f</a>.","apa":"Šarić, A., Vrček, V., &#38; Bühl, M. (2008). Density functional study of protonated formylmetallocenes. <i>Organometallics</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/om700916f\">https://doi.org/10.1021/om700916f</a>","ista":"Šarić A, Vrček V, Bühl M. 2008. Density functional study of protonated formylmetallocenes. Organometallics. 27(3), 394–401."},"volume":27,"main_file_link":[{"url":"https://pubs.acs.org/doi/10.1021/om700916f"}],"extern":"1","publication":"Organometallics","date_updated":"2021-11-30T08:04:44Z","language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"        27","publication_identifier":{"issn":["0276-7333"],"eissn":["1520-6041"]},"date_created":"2021-11-29T15:31:06Z","keyword":["Inorganic Chemistry","Organic Chemistry","Physical and Theoretical Chemistry"],"title":"Density functional study of protonated formylmetallocenes","issue":"3","_id":"10392","year":"2008","oa_version":"None","month":"01","article_processing_charge":"No","acknowledgement":"M.B. wishes to thank Prof. W. Thiel and the Max-Planck-Institut für Kohlenforschung for continuing support. A Humboldt fellowship for V.V. is gratefully acknowledged. Computations were performed on Compaq XP1000 and ES40 workstations as well as on an Intel Xeon PC cluster at the MPI Mülheim. A.S. thanks the Computing Center of the University of Zagreb SRCE for allocating computer time on the Isabella cluster.","abstract":[{"text":"Protonated formylmetallocenes [M(C5H5)(C5H4-CHOH)]+ (M = Fe, Ru) and their isomers have been studied at the BP86 and B3LYP levels of density functional theory. Oxygen-protonated isomers are the most stable forms in each case, with a plethora of ring- or metal-protonated species at least ca. 14 and 10 kcal/mol higher in energy for M = Fe and Ru, respectively. The computed rotational barriers around the C−C bond connecting the cyclopentadienyl and protonated formyl moieties, ca. 18 kcal/mol, are indicative of substantial conjugation between these moieties. Some of the ring- and iron-protonated species are models for possible intermediates in Friedel–Crafts acylation of ferrocene, and the computations provide further evidence that exo attack is clearly favored over endo attack of the electrophile in this reaction. The structures of the most stable mono- and diprotonated formylferrocenes are corroborated by the good agreement between GIAO-B3LYP-computed and experimental NMR chemical shifts.","lang":"eng"}],"date_published":"2008-01-15T00:00:00Z","scopus_import":"1","status":"public","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","publication_status":"published","article_type":"original","author":[{"first_name":"Anđela","full_name":"Šarić, Anđela","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","orcid":"0000-0002-7854-2139","last_name":"Šarić"},{"full_name":"Vrček, Valerije","first_name":"Valerije","last_name":"Vrček"},{"last_name":"Bühl","full_name":"Bühl, Michael","first_name":"Michael"}]},{"intvolume":"        11","date_published":"2008-12-04T00:00:00Z","quality_controlled":0,"abstract":[{"lang":"eng","text":"We consider the linear stochastic Cauchy problem dX (t) =AX (t) dt +B dWH (t), t≥ 0, where A generates a C0-semigroup on a Banach space E, WH is a cylindrical Brownian motion over a Hilbert space H, and B: H → E is a bounded operator. Assuming the existence of a unique minimal invariant measure μ∞, let Lp denote the realization of the Ornstein-Uhlenbeck operator associated with this problem in Lp (E, μ∞). Under suitable assumptions concerning the invariance of the range of B under the semigroup generated by A, we prove the following domain inclusions, valid for 1 &lt; p ≤ 2: Image omitted. Here WHk, p (E, μinfin; denotes the kth order Sobolev space of functions with Fréchet derivatives up to order k in the direction of H. No symmetry assumptions are made on L p."}],"status":"public","date_updated":"2021-01-12T06:55:26Z","acknowledgement":"The authors are supported by the ‘VIDI subsidie’ 639.032.201 of the Netherlands Organization for Scientific Research (NWO) and by the Research Training Network HPRN-CT-2002-00281.","publication_status":"published","date_created":"2018-12-11T11:55:50Z","author":[{"orcid":"0000-0002-0845-1338","last_name":"Maas","full_name":"Jan Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","first_name":"Jan"},{"full_name":"van Neerven, Jan M","first_name":"Jan","last_name":"Van Neerven"}],"oa":1,"year":"2008","_id":"2120","citation":{"short":"J. Maas, J. Van Neerven, Infinite Dimensional Analysis, Quantum Probability and Related Topics 11 (2008) 603–626.","ieee":"J. Maas and J. Van Neerven, “On the domain of non-symmetric Ornstein-Uhlenbeck operators in banach spaces,” <i>Infinite Dimensional Analysis, Quantum Probability and Related Topics</i>, vol. 11, no. 4. World Scientific Publishing, pp. 603–626, 2008.","apa":"Maas, J., &#38; Van Neerven, J. (2008). On the domain of non-symmetric Ornstein-Uhlenbeck operators in banach spaces. <i>Infinite Dimensional Analysis, Quantum Probability and Related Topics</i>. World Scientific Publishing. <a href=\"https://doi.org/10.1142/S0219025708003245\">https://doi.org/10.1142/S0219025708003245</a>","mla":"Maas, Jan, and Jan Van Neerven. “On the Domain of Non-Symmetric Ornstein-Uhlenbeck Operators in Banach Spaces.” <i>Infinite Dimensional Analysis, Quantum Probability and Related Topics</i>, vol. 11, no. 4, World Scientific Publishing, 2008, pp. 603–26, doi:<a href=\"https://doi.org/10.1142/S0219025708003245\">10.1142/S0219025708003245</a>.","ista":"Maas J, Van Neerven J. 2008. On the domain of non-symmetric Ornstein-Uhlenbeck operators in banach spaces. Infinite Dimensional Analysis, Quantum Probability and Related Topics. 11(4), 603–626.","ama":"Maas J, Van Neerven J. On the domain of non-symmetric Ornstein-Uhlenbeck operators in banach spaces. <i>Infinite Dimensional Analysis, Quantum Probability and Related Topics</i>. 2008;11(4):603-626. doi:<a href=\"https://doi.org/10.1142/S0219025708003245\">10.1142/S0219025708003245</a>","chicago":"Maas, Jan, and Jan Van Neerven. “On the Domain of Non-Symmetric Ornstein-Uhlenbeck Operators in Banach Spaces.” <i>Infinite Dimensional Analysis, Quantum Probability and Related Topics</i>. World Scientific Publishing, 2008. <a href=\"https://doi.org/10.1142/S0219025708003245\">https://doi.org/10.1142/S0219025708003245</a>."},"issue":"4","volume":11,"page":"603 - 626","publisher":"World Scientific Publishing","doi":"10.1142/S0219025708003245","day":"04","title":"On the domain of non-symmetric Ornstein-Uhlenbeck operators in banach spaces","type":"journal_article","publication":"Infinite Dimensional Analysis, Quantum Probability and Related Topics","extern":1,"main_file_link":[{"open_access":"1","url":"http://repository.tudelft.nl/view/ir/uuid:c8eca915-d38b-4827-a4d9-e89baabb43a6/"}],"publist_id":"4914","month":"12"}]