[{"month":"10","citation":{"ama":"Dziembowski S, Pietrzak KZ. Intrusion resilient secret sharing. In: IEEE; 2007:227-237. doi:<a href=\"https://doi.org/10.1109/FOCS.2007.63\">10.1109/FOCS.2007.63</a>","ieee":"S. Dziembowski and K. Z. Pietrzak, “Intrusion resilient secret sharing,” presented at the FOCS: Foundations of Computer Science, 2007, pp. 227–237.","apa":"Dziembowski, S., &#38; Pietrzak, K. Z. (2007). Intrusion resilient secret sharing (pp. 227–237). Presented at the FOCS: Foundations of Computer Science, IEEE. <a href=\"https://doi.org/10.1109/FOCS.2007.63\">https://doi.org/10.1109/FOCS.2007.63</a>","mla":"Dziembowski, Stefan, and Krzysztof Z. Pietrzak. <i>Intrusion Resilient Secret Sharing</i>. IEEE, 2007, pp. 227–37, doi:<a href=\"https://doi.org/10.1109/FOCS.2007.63\">10.1109/FOCS.2007.63</a>.","short":"S. Dziembowski, K.Z. Pietrzak, in:, IEEE, 2007, pp. 227–237.","chicago":"Dziembowski, Stefan, and Krzysztof Z Pietrzak. “Intrusion Resilient Secret Sharing,” 227–37. IEEE, 2007. <a href=\"https://doi.org/10.1109/FOCS.2007.63\">https://doi.org/10.1109/FOCS.2007.63</a>.","ista":"Dziembowski S, Pietrzak KZ. 2007. Intrusion resilient secret sharing. FOCS: Foundations of Computer Science, 227–237."},"doi":"10.1109/FOCS.2007.63","author":[{"first_name":"Stefan","last_name":"Dziembowski","full_name":"Dziembowski, Stefan"},{"orcid":"0000-0002-9139-1654","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","full_name":"Krzysztof Pietrzak","last_name":"Pietrzak","first_name":"Krzysztof Z"}],"date_published":"2007-10-23T00:00:00Z","abstract":[{"lang":"eng","text":"We introduce a new primitive called intrusion-resilient secret sharing (IRSS), whose security proof exploits the fact that there exist functions which can be efficiently computed interactively using low communication complexity in k, but not in k-1 rounds. IRSS is a means of sharing a secret message amongst a set of players which comes with a very strong security guarantee. The shares in an IRSS are made artificially large so that it is hard to retrieve them completely, and the reconstruction procedure is interactive requiring the players to exchange k short messages. The adversaries considered can attack the scheme in rounds, where in each round the adversary chooses some player to corrupt and some function, and retrieves the output of that function applied to the share of the corrupted player. This model captures for example computers connected to a network which can occasionally he infected by malicious software like viruses, which can compute any function on the infected machine, but cannot sent out a huge amount of data. Using methods from the bounded-retrieval model, we construct an IRSS scheme which is secure against any computationally unbounded adversary as long as the total amount of information retrieved by the adversary is somewhat less than the length of the shares, and the adversary makes at most k-1 corruption rounds (as described above, where k rounds are necessary for reconstruction). We extend our basic scheme in several ways in order to allow the shares sent by the dealer to be short (the players then blow them up locally) and to handle even stronger adversaries who can learn some of the shares completely. As mentioned, there is an obvious connection between IRSS schemes and the fact that there exist functions with an exponential gap in their communication complexity for k and k-1 rounds. Our scheme implies such a separation which is in several aspects stronger than the previously known ones."}],"year":"2007","publication_status":"published","date_updated":"2021-01-12T07:41:54Z","title":"Intrusion resilient secret sharing","_id":"3220","type":"conference","day":"23","date_created":"2018-12-11T12:02:05Z","status":"public","quality_controlled":0,"extern":1,"conference":{"name":"FOCS: Foundations of Computer Science"},"publist_id":"3459","page":"227 - 237","publisher":"IEEE"},{"publist_id":"3460","conference":{"name":"EUROCRYPT: Theory and Applications of Cryptographic Techniques"},"page":"517 - 533","extern":1,"acknowledgement":"This work was partially supported by the Zurich Information Security Center. It represents the views of the authors.","publisher":"Springer","type":"conference","day":"12","date_updated":"2021-01-12T07:41:54Z","title":"Range extension for weak PRFs the good the bad and the ugly","_id":"3221","alternative_title":["LNCS"],"quality_controlled":0,"intvolume":"      4515","status":"public","date_created":"2018-12-11T12:02:06Z","year":"2007","publication_status":"published","date_published":"2007-06-12T00:00:00Z","abstract":[{"lang":"eng","text":"We investigate a general class of (black-box) constructions for range extension of weak pseudorandom functions: a construction based on m independent functions F 1,...,F m is given by a set of strings over {1,...,m}*, where for example {〈2〉, 〈1,2〉} corresponds to the function X ↦[F 2(X),F 2(F 1(X))]. All efficient constructions for range expansion of weak pseudorandom functions that we are aware of are of this form.\nWe completely classify such constructions as good, bad or ugly, where the good constructions are those whose security can be proven via a black-box reduction, the bad constructions are those whose insecurity can be proven via a black-box reduction, and the ugly constructions are those which are neither good nor bad.\nOur classification shows that the range expansion from [10] is optimal, in the sense that it achieves the best possible expansion (2 m  − 1 when using m keys).\nAlong the way we show that for weak quasirandom functions (i.e. in the information theoretic setting), all constructions which are not bad – in particular all the ugly ones – are secure."}],"doi":"10.1007/978-3-540-72540-4_30","month":"06","citation":{"ista":"Pietrzak KZ, Sjödin J. 2007. Range extension for weak PRFs the good the bad and the ugly. EUROCRYPT: Theory and Applications of Cryptographic Techniques, LNCS, vol. 4515, 517–533.","chicago":"Pietrzak, Krzysztof Z, and Johan Sjödin. “Range Extension for Weak PRFs the Good the Bad and the Ugly,” 4515:517–33. Springer, 2007. <a href=\"https://doi.org/10.1007/978-3-540-72540-4_30\">https://doi.org/10.1007/978-3-540-72540-4_30</a>.","short":"K.Z. Pietrzak, J. Sjödin, in:, Springer, 2007, pp. 517–533.","mla":"Pietrzak, Krzysztof Z., and Johan Sjödin. <i>Range Extension for Weak PRFs the Good the Bad and the Ugly</i>. Vol. 4515, Springer, 2007, pp. 517–33, doi:<a href=\"https://doi.org/10.1007/978-3-540-72540-4_30\">10.1007/978-3-540-72540-4_30</a>.","apa":"Pietrzak, K. Z., &#38; Sjödin, J. (2007). Range extension for weak PRFs the good the bad and the ugly (Vol. 4515, pp. 517–533). Presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, Springer. <a href=\"https://doi.org/10.1007/978-3-540-72540-4_30\">https://doi.org/10.1007/978-3-540-72540-4_30</a>","ieee":"K. Z. Pietrzak and J. Sjödin, “Range extension for weak PRFs the good the bad and the ugly,” presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, 2007, vol. 4515, pp. 517–533.","ama":"Pietrzak KZ, Sjödin J. Range extension for weak PRFs the good the bad and the ugly. In: Vol 4515. Springer; 2007:517-533. doi:<a href=\"https://doi.org/10.1007/978-3-540-72540-4_30\">10.1007/978-3-540-72540-4_30</a>"},"author":[{"orcid":"0000-0002-9139-1654","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","first_name":"Krzysztof Z","last_name":"Pietrzak","full_name":"Krzysztof Pietrzak"},{"first_name":"Johan","last_name":"Sjödin","full_name":"Sjödin,  Johan"}],"volume":4515},{"publisher":"Springer","page":"86 - 102","conference":{"name":"TCC: Theory of Cryptography Conference"},"publist_id":"3457","extern":1,"quality_controlled":0,"alternative_title":["LNCS"],"date_created":"2018-12-11T12:02:06Z","status":"public","intvolume":"      4392","day":"22","type":"conference","_id":"3222","title":"Parallel repetition of computationally sound protocols revisited","date_updated":"2021-01-12T07:41:54Z","publication_status":"published","year":"2007","date_published":"2007-03-22T00:00:00Z","abstract":[{"text":"Parallel repetition is well known to reduce the error probability at an exponential rate for single- and multi-prover interactive proofs.\nBellare, Impagliazzo and Naor (1997) show that this is also true for protocols where the soundness only holds against computationally bounded provers (e.g. interactive arguments) if the protocol has at most three rounds.\nOn the other hand, for four rounds they give a protocol where this is no longer the case: the error probability does not decrease below some constant even if the protocol is repeated a polynomial number of times. Unfortunately, this protocol is not very convincing as the communication complexity of each instance of the protocol grows linearly with the number of repetitions, and for such protocols the error does not even decrease for some types of interactive proofs. Noticing this, Bellare et al. construct (a quite artificial) oracle relative to which a four round protocol exists whose communication complexity does not depend on the number of parallel repetitions. This shows that there is no “black-box” error reduction theorem for four round protocols.\nIn this paper we give the first computationally sound protocol where k-fold parallel repetition does not decrease the error probability below some constant for any polynomial k (and where the communication complexity does not depend on k). The protocol has eight rounds and uses the universal arguments of Barak and Goldreich (2001). We also give another four round protocol relative to an oracle, unlike the artificial oracle of Bellare et al., we just need a generic group. This group can then potentially be instantiated with some real group satisfying some well defined hardness assumptions (we do not know of any candidate for such a group at the moment).","lang":"eng"}],"volume":4392,"author":[{"id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9139-1654","full_name":"Krzysztof Pietrzak","first_name":"Krzysztof Z","last_name":"Pietrzak"},{"full_name":"Wikström, Douglas","first_name":"Douglas","last_name":"Wikström"}],"doi":"10.1007/978-3-540-70936-7_5","citation":{"mla":"Pietrzak, Krzysztof Z., and Douglas Wikström. <i>Parallel Repetition of Computationally Sound Protocols Revisited</i>. Vol. 4392, Springer, 2007, pp. 86–102, doi:<a href=\"https://doi.org/10.1007/978-3-540-70936-7_5\">10.1007/978-3-540-70936-7_5</a>.","apa":"Pietrzak, K. Z., &#38; Wikström, D. (2007). Parallel repetition of computationally sound protocols revisited (Vol. 4392, pp. 86–102). Presented at the TCC: Theory of Cryptography Conference, Springer. <a href=\"https://doi.org/10.1007/978-3-540-70936-7_5\">https://doi.org/10.1007/978-3-540-70936-7_5</a>","ieee":"K. Z. Pietrzak and D. Wikström, “Parallel repetition of computationally sound protocols revisited,” presented at the TCC: Theory of Cryptography Conference, 2007, vol. 4392, pp. 86–102.","ama":"Pietrzak KZ, Wikström D. Parallel repetition of computationally sound protocols revisited. In: Vol 4392. Springer; 2007:86-102. doi:<a href=\"https://doi.org/10.1007/978-3-540-70936-7_5\">10.1007/978-3-540-70936-7_5</a>","ista":"Pietrzak KZ, Wikström D. 2007. Parallel repetition of computationally sound protocols revisited. TCC: Theory of Cryptography Conference, LNCS, vol. 4392, 86–102.","short":"K.Z. Pietrzak, D. Wikström, in:, Springer, 2007, pp. 86–102.","chicago":"Pietrzak, Krzysztof Z, and Douglas Wikström. “Parallel Repetition of Computationally Sound Protocols Revisited,” 4392:86–102. Springer, 2007. <a href=\"https://doi.org/10.1007/978-3-540-70936-7_5\">https://doi.org/10.1007/978-3-540-70936-7_5</a>."},"month":"03"},{"day":"11","type":"conference","_id":"3223","title":"Improving the security of MACs via randomized message preprocessing","date_updated":"2021-01-12T07:41:55Z","quality_controlled":0,"alternative_title":["LNCS"],"status":"public","date_created":"2018-12-11T12:02:06Z","intvolume":"      4593","page":"414 - 433","conference":{"name":"FSE: Fast Software Encryption"},"publist_id":"3458","extern":1,"publisher":"Springer","doi":"10.1007/978-3-540-74619-5_26","citation":{"mla":"Dodis, Yevgeniy, and Krzysztof Z. Pietrzak. <i>Improving the Security of MACs via Randomized Message Preprocessing</i>. Vol. 4593, Springer, 2007, pp. 414–33, doi:<a href=\"https://doi.org/10.1007/978-3-540-74619-5_26\">10.1007/978-3-540-74619-5_26</a>.","apa":"Dodis, Y., &#38; Pietrzak, K. Z. (2007). Improving the security of MACs via randomized message preprocessing (Vol. 4593, pp. 414–433). Presented at the FSE: Fast Software Encryption, Springer. <a href=\"https://doi.org/10.1007/978-3-540-74619-5_26\">https://doi.org/10.1007/978-3-540-74619-5_26</a>","ieee":"Y. Dodis and K. Z. Pietrzak, “Improving the security of MACs via randomized message preprocessing,” presented at the FSE: Fast Software Encryption, 2007, vol. 4593, pp. 414–433.","ama":"Dodis Y, Pietrzak KZ. Improving the security of MACs via randomized message preprocessing. In: Vol 4593. Springer; 2007:414-433. doi:<a href=\"https://doi.org/10.1007/978-3-540-74619-5_26\">10.1007/978-3-540-74619-5_26</a>","ista":"Dodis Y, Pietrzak KZ. 2007. Improving the security of MACs via randomized message preprocessing. FSE: Fast Software Encryption, LNCS, vol. 4593, 414–433.","chicago":"Dodis, Yevgeniy, and Krzysztof Z Pietrzak. “Improving the Security of MACs via Randomized Message Preprocessing,” 4593:414–33. Springer, 2007. <a href=\"https://doi.org/10.1007/978-3-540-74619-5_26\">https://doi.org/10.1007/978-3-540-74619-5_26</a>.","short":"Y. Dodis, K.Z. Pietrzak, in:, Springer, 2007, pp. 414–433."},"month":"10","volume":4593,"author":[{"last_name":"Dodis","first_name":"Yevgeniy","full_name":"Dodis, Yevgeniy"},{"orcid":"0000-0002-9139-1654","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","full_name":"Krzysztof Pietrzak","first_name":"Krzysztof Z","last_name":"Pietrzak"}],"publication_status":"published","year":"2007","abstract":[{"text":"“Hash then encrypt” is an approach to message authentication, where first the message is hashed down using an ε-universal hash function, and then the resulting k-bit value is encrypted, say with a block-cipher. The security of this scheme is proportional to εq2, where q is the number of MACs the adversary can request. As ε is at least 2−k, the best one can hope for is O(q2/2k) security. Unfortunately, such small ε is not achieved by simple hash functions used in practice, such as the polynomial evaluation or the Merkle-Damg ̊ard construction, where ε grows with the message length L.\nThe main insight of this work comes from the fact that, by using ran- domized message preprocessing via a short random salt p (which must then be sent as part of the authentication tag), we can use the “hash then encrypt” paradigm with suboptimal “practical” ε-universal hash func- tions, and still improve its exact security to optimal O(q2/2k). Specif- ically, by using at most an O(logL)-bit salt p, one can always regain the optimal exact security O(q2/2k), even in situations where ε grows polynomially with L. We also give very simple preprocessing maps for popular “suboptimal” hash functions, namely polynomial evaluation and the Merkle-Damg ̊ard construction.\nOur results come from a general extension of the classical Carter- Wegman paradigm, which we believe is of independent interest. On a high level, it shows that public randomization allows one to use the potentially much smaller “average-case” collision probability in place of the “worst-case” collision probability ε.","lang":"eng"}],"date_published":"2007-10-11T00:00:00Z"},{"month":"01","issue":"2","citation":{"short":"M. Desai, D. Weissman, M. Feldman, Genetics 177 (2007) 1001–10.","chicago":"Desai, Michael, Daniel Weissman, and Marcus Feldman. “Evolution Can Favor Antagonistic Epistasis.” <i>Genetics</i>. Genetics Society of America, 2007. <a href=\"https://doi.org/10.1534/genetics.107.075812\">https://doi.org/10.1534/genetics.107.075812</a>.","ista":"Desai M, Weissman D, Feldman M. 2007. Evolution can favor antagonistic epistasis. Genetics. 177(2), 1001–10.","ieee":"M. Desai, D. Weissman, and M. Feldman, “Evolution can favor antagonistic epistasis,” <i>Genetics</i>, vol. 177, no. 2. Genetics Society of America, pp. 1001–10, 2007.","apa":"Desai, M., Weissman, D., &#38; Feldman, M. (2007). Evolution can favor antagonistic epistasis. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.107.075812\">https://doi.org/10.1534/genetics.107.075812</a>","mla":"Desai, Michael, et al. “Evolution Can Favor Antagonistic Epistasis.” <i>Genetics</i>, vol. 177, no. 2, Genetics Society of America, 2007, pp. 1001–10, doi:<a href=\"https://doi.org/10.1534/genetics.107.075812\">10.1534/genetics.107.075812</a>.","ama":"Desai M, Weissman D, Feldman M. Evolution can favor antagonistic epistasis. <i>Genetics</i>. 2007;177(2):1001-1010. doi:<a href=\"https://doi.org/10.1534/genetics.107.075812\">10.1534/genetics.107.075812</a>"},"doi":"10.1534/genetics.107.075812","author":[{"last_name":"Desai","first_name":"Michael","full_name":"Desai, Michael M"},{"id":"2D0CE020-F248-11E8-B48F-1D18A9856A87","first_name":"Daniel","last_name":"Weissman","full_name":"Daniel Weissman"},{"last_name":"Feldman","first_name":"Marcus","full_name":"Feldman, Marcus W"}],"volume":177,"date_published":"2007-01-01T00:00:00Z","abstract":[{"lang":"eng","text":"The accumulation of deleterious mutations plays a major role in evolution, and key to this are the interactions between their fitness effects, known as epistasis. Whether mutations tend to interact synergistically (with multiple mutations being more deleterious than would be expected from their individual fitness effects) or antagonistically is important for a variety of evolutionary questions, particularly the evolution of sex. Unfortunately, the experimental evidence on the prevalence and strength of epistasis is mixed and inconclusive. Here we study theoretically whether synergistic or antagonistic epistasis is likely to be favored by evolution and by how much. We find that in the presence of recombination, evolution favors less synergistic or more antagonistic epistasis whenever mutations that change the epistasis in this direction are possible. This is because evolution favors increased buffering against the effects of deleterious mutations. This suggests that we should not expect synergistic epistasis to be widespread in nature and hence that the mutational deterministic hypothesis for the advantage of sex may not apply widely."}],"year":"2007","publication_status":"published","date_updated":"2021-01-12T07:42:32Z","title":"Evolution can favor antagonistic epistasis","_id":"3305","type":"journal_article","day":"01","intvolume":"       177","date_created":"2018-12-11T12:02:34Z","status":"public","quality_controlled":0,"extern":1,"publist_id":"3335","page":"1001 - 10","publisher":"Genetics Society of America","publication":"Genetics"},{"status":"public","date_created":"2018-12-11T12:03:11Z","intvolume":"        93","quality_controlled":0,"date_updated":"2021-01-12T07:43:18Z","title":"Free energy of membrane protein unfolding derived from single-molecule force measurements","_id":"3411","type":"journal_article","day":"01","publisher":"Biophysical Society","oa":1,"publication":"Biophysical Journal","extern":1,"main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1913163/","open_access":"1"}],"publist_id":"2990","page":"930 - 937","author":[{"first_name":"Johannes","last_name":"Preiner","full_name":"Preiner, Johannes"},{"id":"33BA6C30-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8023-9315","full_name":"Harald Janovjak","first_name":"Harald L","last_name":"Janovjak"},{"full_name":"Rankl, Christian","first_name":"Christian","last_name":"Rankl"},{"full_name":"Knaus, Helene","first_name":"Helene","last_name":"Knaus"},{"full_name":"Cisneros, David A","first_name":"David","last_name":"Cisneros"},{"full_name":"Kedrov, Alexej","last_name":"Kedrov","first_name":"Alexej"},{"full_name":"Kienberger, Ferry","last_name":"Kienberger","first_name":"Ferry"},{"last_name":"Mueller","first_name":"Daniel","full_name":"Mueller, Daniel J"},{"full_name":"Hinterdorfer, Peter","first_name":"Peter","last_name":"Hinterdorfer"}],"volume":93,"month":"08","citation":{"ama":"Preiner J, Janovjak HL, Rankl C, et al. Free energy of membrane protein unfolding derived from single-molecule force measurements. <i>Biophysical Journal</i>. 2007;93(3):930-937. doi:<a href=\"https://doi.org/10.1529/biophysj.106.096982\">10.1529/biophysj.106.096982</a>","mla":"Preiner, Johannes, et al. “Free Energy of Membrane Protein Unfolding Derived from Single-Molecule Force Measurements.” <i>Biophysical Journal</i>, vol. 93, no. 3, Biophysical Society, 2007, pp. 930–37, doi:<a href=\"https://doi.org/10.1529/biophysj.106.096982\">10.1529/biophysj.106.096982</a>.","ieee":"J. Preiner <i>et al.</i>, “Free energy of membrane protein unfolding derived from single-molecule force measurements,” <i>Biophysical Journal</i>, vol. 93, no. 3. Biophysical Society, pp. 930–937, 2007.","apa":"Preiner, J., Janovjak, H. L., Rankl, C., Knaus, H., Cisneros, D., Kedrov, A., … Hinterdorfer, P. (2007). Free energy of membrane protein unfolding derived from single-molecule force measurements. <i>Biophysical Journal</i>. Biophysical Society. <a href=\"https://doi.org/10.1529/biophysj.106.096982\">https://doi.org/10.1529/biophysj.106.096982</a>","ista":"Preiner J, Janovjak HL, Rankl C, Knaus H, Cisneros D, Kedrov A, Kienberger F, Mueller D, Hinterdorfer P. 2007. Free energy of membrane protein unfolding derived from single-molecule force measurements. Biophysical Journal. 93(3), 930–937.","short":"J. Preiner, H.L. Janovjak, C. Rankl, H. Knaus, D. Cisneros, A. Kedrov, F. Kienberger, D. Mueller, P. Hinterdorfer, Biophysical Journal 93 (2007) 930–937.","chicago":"Preiner, Johannes, Harald L Janovjak, Christian Rankl, Helene Knaus, David Cisneros, Alexej Kedrov, Ferry Kienberger, Daniel Mueller, and Peter Hinterdorfer. “Free Energy of Membrane Protein Unfolding Derived from Single-Molecule Force Measurements.” <i>Biophysical Journal</i>. Biophysical Society, 2007. <a href=\"https://doi.org/10.1529/biophysj.106.096982\">https://doi.org/10.1529/biophysj.106.096982</a>."},"issue":"3","doi":"10.1529/biophysj.106.096982","date_published":"2007-08-01T00:00:00Z","abstract":[{"lang":"eng","text":"Mechanical single-molecule techniques offer exciting possibilities to investigate protein folding and stability in native environments at submolecular resolution. By applying a free-energy reconstruction procedure developed by Hummer and Szabo, which is based on a statistical theorem introduced by Jarzynski, we determined the unfolding free energy of the membrane proteins bacteriorhodopsin (BR), halorhodopsin, and the sodium-proton antiporter NhaA. The calculated energies ranged from 290.5kcal/mol for BR to 485.5kcal/mol for NhaA. For the remarkably stable BR, the equilibrium unfolding free energy was independent of pulling rate and temperature ranging between 18 and 42°C. Our experiments also revealed heterogeneous energetic properties in individual transmembrane helices. In halorhodopsin, the stabilization of a short helical segment yielded a characteristic signature in the energy profile. In NhaA, a pronounced peak was observed at a functionally important site in the protein. Since a large variety of single- and multispan membrane proteins can be tackled in mechanical unfolding experiments, our approach provides a basis for systematically elucidating energetic properties of membrane proteins with the resolution of individual secondary-structure elements."}],"year":"2007","publication_status":"published"},{"doi":"10.1146/annurev.biophys.36.040306.132640","citation":{"ista":"Kedrov A, Janovjak HL, Sapra T, Mueller D. 2007. Deciphering molecular interactions of native membrane proteins by single-molecule force spectroscopy. Annual Review of Biophysics. 36, 233–260.","chicago":"Kedrov, Alexej, Harald L Janovjak, Tanuj Sapra, and Daniel Mueller. “Deciphering Molecular Interactions of Native Membrane Proteins by Single-Molecule Force Spectroscopy.” <i>Annual Review of Biophysics</i>. Annual Reviews, 2007. <a href=\"https://doi.org/10.1146/annurev.biophys.36.040306.132640\">https://doi.org/10.1146/annurev.biophys.36.040306.132640</a>.","short":"A. Kedrov, H.L. Janovjak, T. Sapra, D. Mueller, Annual Review of Biophysics 36 (2007) 233–260.","ama":"Kedrov A, Janovjak HL, Sapra T, Mueller D. Deciphering molecular interactions of native membrane proteins by single-molecule force spectroscopy. <i>Annual Review of Biophysics</i>. 2007;36:233-260. doi:<a href=\"https://doi.org/10.1146/annurev.biophys.36.040306.132640\">10.1146/annurev.biophys.36.040306.132640</a>","mla":"Kedrov, Alexej, et al. “Deciphering Molecular Interactions of Native Membrane Proteins by Single-Molecule Force Spectroscopy.” <i>Annual Review of Biophysics</i>, vol. 36, Annual Reviews, 2007, pp. 233–60, doi:<a href=\"https://doi.org/10.1146/annurev.biophys.36.040306.132640\">10.1146/annurev.biophys.36.040306.132640</a>.","ieee":"A. Kedrov, H. L. Janovjak, T. Sapra, and D. Mueller, “Deciphering molecular interactions of native membrane proteins by single-molecule force spectroscopy,” <i>Annual Review of Biophysics</i>, vol. 36. Annual Reviews, pp. 233–260, 2007.","apa":"Kedrov, A., Janovjak, H. L., Sapra, T., &#38; Mueller, D. (2007). Deciphering molecular interactions of native membrane proteins by single-molecule force spectroscopy. <i>Annual Review of Biophysics</i>. Annual Reviews. <a href=\"https://doi.org/10.1146/annurev.biophys.36.040306.132640\">https://doi.org/10.1146/annurev.biophys.36.040306.132640</a>"},"month":"06","volume":36,"author":[{"full_name":"Kedrov, Alexej","first_name":"Alexej","last_name":"Kedrov"},{"full_name":"Harald Janovjak","last_name":"Janovjak","first_name":"Harald L","orcid":"0000-0002-8023-9315","id":"33BA6C30-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Sapra, Tanuj K","first_name":"Tanuj","last_name":"Sapra"},{"full_name":"Mueller, Daniel J","last_name":"Mueller","first_name":"Daniel"}],"publication_status":"published","year":"2007","date_published":"2007-06-01T00:00:00Z","abstract":[{"text":"Molecular interactions are the basic language of biological processes.\nThey establish the forces interacting between the building blocks of\nproteins and other macromolecules, thus determining their functional\nroles. Because molecular interactions trigger virtually every\nbiological process, approaches to decipher their language are needed.\nSingle-molecule force spectroscopy (SMFS) has been used to detect\nand characterize different types of molecular interactions that occur\nbetween and within native membrane proteins. The first experiments\ndetected and localized molecular interactions that stabilized\nmembrane proteins, including how these interactions were established\nduring folding of α-helical secondary structure elements into\nthe native protein and how they changed with oligomerization, temperature,\nand mutations. SMFS also enables investigators to detect\nand locate molecular interactions established during ligand and inhibitor\nbinding. These exciting applications provide opportunities\nfor studying the molecular forces of life. Further developments will\nelucidate the origins of molecular interactions encoded in their lifetimes,\ninteraction ranges, interplay, and dynamics characteristic of biological systems.","lang":"eng"}],"day":"01","type":"review","_id":"3412","date_updated":"2019-04-26T07:22:27Z","title":"Deciphering molecular interactions of native membrane proteins by single-molecule force spectroscopy","quality_controlled":0,"date_created":"2018-12-11T12:03:11Z","status":"public","intvolume":"        36","page":"233 - 260","publist_id":"2989","extern":1,"publication":"Annual Review of Biophysics","publisher":"Annual Reviews"},{"issue":"44","citation":{"chicago":"Klajn, Rafal, Anatoliy O. Pinchuk, George C. Schatz, and Bartosz A. Grzybowski. “Synthesis of Heterodimeric Sphere–Prism Nanostructures via Metastable Gold Supraspheres.” <i>Angewandte Chemie International Edition</i>. Wiley, 2007. <a href=\"https://doi.org/10.1002/anie.200702570\">https://doi.org/10.1002/anie.200702570</a>.","short":"R. Klajn, A.O. Pinchuk, G.C. Schatz, B.A. Grzybowski, Angewandte Chemie International Edition 46 (2007) 8363–8367.","ista":"Klajn R, Pinchuk AO, Schatz GC, Grzybowski BA. 2007. Synthesis of heterodimeric sphere–prism nanostructures via metastable gold supraspheres. Angewandte Chemie International Edition. 46(44), 8363–8367.","ieee":"R. Klajn, A. O. Pinchuk, G. C. Schatz, and B. A. Grzybowski, “Synthesis of heterodimeric sphere–prism nanostructures via metastable gold supraspheres,” <i>Angewandte Chemie International Edition</i>, vol. 46, no. 44. Wiley, pp. 8363–8367, 2007.","apa":"Klajn, R., Pinchuk, A. O., Schatz, G. C., &#38; Grzybowski, B. A. (2007). Synthesis of heterodimeric sphere–prism nanostructures via metastable gold supraspheres. <i>Angewandte Chemie International Edition</i>. Wiley. <a href=\"https://doi.org/10.1002/anie.200702570\">https://doi.org/10.1002/anie.200702570</a>","mla":"Klajn, Rafal, et al. “Synthesis of Heterodimeric Sphere–Prism Nanostructures via Metastable Gold Supraspheres.” <i>Angewandte Chemie International Edition</i>, vol. 46, no. 44, Wiley, 2007, pp. 8363–67, doi:<a href=\"https://doi.org/10.1002/anie.200702570\">10.1002/anie.200702570</a>.","ama":"Klajn R, Pinchuk AO, Schatz GC, Grzybowski BA. Synthesis of heterodimeric sphere–prism nanostructures via metastable gold supraspheres. <i>Angewandte Chemie International Edition</i>. 2007;46(44):8363-8367. doi:<a href=\"https://doi.org/10.1002/anie.200702570\">10.1002/anie.200702570</a>"},"month":"11","keyword":["General Chemistry","Catalysis"],"author":[{"first_name":"Rafal","last_name":"Klajn","full_name":"Klajn, Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"},{"first_name":"Anatoliy O.","last_name":"Pinchuk","full_name":"Pinchuk, Anatoliy O."},{"full_name":"Schatz, George C.","first_name":"George C.","last_name":"Schatz"},{"last_name":"Grzybowski","first_name":"Bartosz A.","full_name":"Grzybowski, Bartosz A."}],"article_type":"original","date_published":"2007-11-12T00:00:00Z","oa_version":"None","publication_status":"published","year":"2007","_id":"13424","title":"Synthesis of heterodimeric sphere–prism nanostructures via metastable gold supraspheres","publication_identifier":{"issn":["1433-7851"],"eissn":["1521-3773"]},"intvolume":"        46","quality_controlled":"1","extern":"1","external_id":{"pmid":["17902083"]},"doi":"10.1002/anie.200702570","volume":46,"language":[{"iso":"eng"}],"scopus_import":"1","abstract":[{"text":"Changing shapes: Metastable spherical aggregates of gold nanoparticles undergo a one-to-one, thermally induced transformation into heterodimers comprising connected plate and spherical domains. By controlling the reaction time, it is possible to isolate a variety of structures differing in the relative sizes of the domains and in the overall optical properties (see picture).","lang":"eng"}],"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-08-08T11:17:57Z","day":"12","type":"journal_article","date_created":"2023-08-01T10:31:08Z","status":"public","pmid":1,"page":"8363-8367","publication":"Angewandte Chemie International Edition","publisher":"Wiley"},{"citation":{"ama":"Klajn R, Bishop KJM, Grzybowski BA. Light-controlled self-assembly of reversible and irreversible nanoparticle suprastructures. <i>Proceedings of the National Academy of Sciences</i>. 2007;104(25):10305-10309. doi:<a href=\"https://doi.org/10.1073/pnas.0611371104\">10.1073/pnas.0611371104</a>","mla":"Klajn, Rafal, et al. “Light-Controlled Self-Assembly of Reversible and Irreversible Nanoparticle Suprastructures.” <i>Proceedings of the National Academy of Sciences</i>, vol. 104, no. 25, Proceedings of the National Academy of Sciences, 2007, pp. 10305–09, doi:<a href=\"https://doi.org/10.1073/pnas.0611371104\">10.1073/pnas.0611371104</a>.","ieee":"R. Klajn, K. J. M. Bishop, and B. A. Grzybowski, “Light-controlled self-assembly of reversible and irreversible nanoparticle suprastructures,” <i>Proceedings of the National Academy of Sciences</i>, vol. 104, no. 25. Proceedings of the National Academy of Sciences, pp. 10305–10309, 2007.","apa":"Klajn, R., Bishop, K. J. M., &#38; Grzybowski, B. A. (2007). Light-controlled self-assembly of reversible and irreversible nanoparticle suprastructures. <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.0611371104\">https://doi.org/10.1073/pnas.0611371104</a>","ista":"Klajn R, Bishop KJM, Grzybowski BA. 2007. Light-controlled self-assembly of reversible and irreversible nanoparticle suprastructures. Proceedings of the National Academy of Sciences. 104(25), 10305–10309.","chicago":"Klajn, Rafal, Kyle J. M. Bishop, and Bartosz A. Grzybowski. “Light-Controlled Self-Assembly of Reversible and Irreversible Nanoparticle Suprastructures.” <i>Proceedings of the National Academy of Sciences</i>. Proceedings of the National Academy of Sciences, 2007. <a href=\"https://doi.org/10.1073/pnas.0611371104\">https://doi.org/10.1073/pnas.0611371104</a>.","short":"R. Klajn, K.J.M. Bishop, B.A. Grzybowski, Proceedings of the National Academy of Sciences 104 (2007) 10305–10309."},"issue":"25","month":"06","keyword":["Multidisciplinary"],"author":[{"full_name":"Klajn, Rafal","first_name":"Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"},{"last_name":"Bishop","first_name":"Kyle J. M.","full_name":"Bishop, Kyle J. M."},{"last_name":"Grzybowski","first_name":"Bartosz A.","full_name":"Grzybowski, Bartosz A."}],"article_type":"original","date_published":"2007-06-19T00:00:00Z","publication_status":"published","oa_version":"Published Version","year":"2007","_id":"13425","title":"Light-controlled self-assembly of reversible and irreversible nanoparticle suprastructures","publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"intvolume":"       104","quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.1073/pnas.0611371104","open_access":"1"}],"extern":"1","oa":1,"external_id":{"pmid":["17563381"]},"doi":"10.1073/pnas.0611371104","volume":104,"language":[{"iso":"eng"}],"scopus_import":"1","abstract":[{"lang":"eng","text":"Nanoparticles (NPs) decorated with ligands combining photoswitchable dipoles and covalent cross-linkers can be assembled by light into organized, three-dimensional suprastructures of various types and sizes. NPs covered with only few photoactive ligands form metastable crystals that can be assembled and disassembled “on demand” by using light of different wavelengths. For higher surface concentrations, self-assembly is irreversible, and the NPs organize into permanently cross-linked structures including robust supracrystals and plastic spherical aggregates."}],"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2023-08-08T11:24:51Z","day":"19","type":"journal_article","status":"public","date_created":"2023-08-01T10:31:19Z","pmid":1,"page":"10305-10309","publication":"Proceedings of the National Academy of Sciences","publisher":"Proceedings of the National Academy of Sciences"},{"keyword":["Electrochemistry","Spectroscopy","Surfaces and Interfaces","Condensed Matter Physics","General Materials Science"],"author":[{"first_name":"Maciej","last_name":"Paszewski","full_name":"Paszewski, Maciej"},{"last_name":"Smoukov","first_name":"Stoyan K.","full_name":"Smoukov, Stoyan K."},{"full_name":"Klajn, Rafal","first_name":"Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"},{"full_name":"Grzybowski, Bartosz A.","last_name":"Grzybowski","first_name":"Bartosz A."}],"issue":"10","citation":{"ama":"Paszewski M, Smoukov SK, Klajn R, Grzybowski BA. Multilevel surface nano- and microstructuring via sequential photoswelling of dichromated gelatin. <i>Langmuir</i>. 2007;23(10):5419-5422. doi:<a href=\"https://doi.org/10.1021/la062982c\">10.1021/la062982c</a>","apa":"Paszewski, M., Smoukov, S. K., Klajn, R., &#38; Grzybowski, B. A. (2007). Multilevel surface nano- and microstructuring via sequential photoswelling of dichromated gelatin. <i>Langmuir</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/la062982c\">https://doi.org/10.1021/la062982c</a>","ieee":"M. Paszewski, S. K. Smoukov, R. Klajn, and B. A. Grzybowski, “Multilevel surface nano- and microstructuring via sequential photoswelling of dichromated gelatin,” <i>Langmuir</i>, vol. 23, no. 10. American Chemical Society, pp. 5419–5422, 2007.","mla":"Paszewski, Maciej, et al. “Multilevel Surface Nano- and Microstructuring via Sequential Photoswelling of Dichromated Gelatin.” <i>Langmuir</i>, vol. 23, no. 10, American Chemical Society, 2007, pp. 5419–22, doi:<a href=\"https://doi.org/10.1021/la062982c\">10.1021/la062982c</a>.","short":"M. Paszewski, S.K. Smoukov, R. Klajn, B.A. Grzybowski, Langmuir 23 (2007) 5419–5422.","chicago":"Paszewski, Maciej, Stoyan K. Smoukov, Rafal Klajn, and Bartosz A. Grzybowski. “Multilevel Surface Nano- and Microstructuring via Sequential Photoswelling of Dichromated Gelatin.” <i>Langmuir</i>. American Chemical Society, 2007. <a href=\"https://doi.org/10.1021/la062982c\">https://doi.org/10.1021/la062982c</a>.","ista":"Paszewski M, Smoukov SK, Klajn R, Grzybowski BA. 2007. Multilevel surface nano- and microstructuring via sequential photoswelling of dichromated gelatin. Langmuir. 23(10), 5419–5422."},"month":"04","oa_version":"None","publication_status":"published","year":"2007","date_published":"2007-04-11T00:00:00Z","article_type":"original","quality_controlled":"1","intvolume":"        23","publication_identifier":{"eissn":["1520-5827"],"issn":["0743-7463"]},"_id":"13426","title":"Multilevel surface nano- and microstructuring via sequential photoswelling of dichromated gelatin","extern":"1","volume":23,"external_id":{"pmid":["17425340"]},"doi":"10.1021/la062982c","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"Photoswelling of thin films of dichromated gelatin provides a basis for fabrication of multilevel surface reliefs via sequential UV illumination through different photomasks. The remarkable feature of this simple, benchtop technique is that by adjusting irradiation times, film thickness, or its hydration state the heights of the developed features can be varied from few nanometers to tens of microns. After UV exposure, the surface structures can be replicated faithfully into either soft or hard PDMS stamps.","lang":"eng"}],"article_processing_charge":"No","scopus_import":"1","language":[{"iso":"eng"}],"status":"public","date_created":"2023-08-01T10:31:33Z","day":"11","type":"journal_article","date_updated":"2023-08-08T11:26:24Z","publication":"Langmuir","publisher":"American Chemical Society","page":"5419-5422","pmid":1},{"publication_identifier":{"eissn":["1095-9203"],"issn":["0036-8075"]},"title":"Plastic and moldable metals by self-assembly of sticky nanoparticle aggregates","_id":"13427","quality_controlled":"1","intvolume":"       316","extern":"1","month":"04","issue":"5822","citation":{"short":"R. Klajn, K.J.M. Bishop, M. Fialkowski, M. Paszewski, C.J. Campbell, T.P. Gray, B.A. Grzybowski, Science 316 (2007) 261–264.","chicago":"Klajn, Rafal, Kyle J. M. Bishop, Marcin Fialkowski, Maciej Paszewski, Christopher J. Campbell, Timothy P. Gray, and Bartosz A. Grzybowski. “Plastic and Moldable Metals by Self-Assembly of Sticky Nanoparticle Aggregates.” <i>Science</i>. American Association for the Advancement of Science, 2007. <a href=\"https://doi.org/10.1126/science.1139131\">https://doi.org/10.1126/science.1139131</a>.","ista":"Klajn R, Bishop KJM, Fialkowski M, Paszewski M, Campbell CJ, Gray TP, Grzybowski BA. 2007. Plastic and moldable metals by self-assembly of sticky nanoparticle aggregates. Science. 316(5822), 261–264.","ama":"Klajn R, Bishop KJM, Fialkowski M, et al. Plastic and moldable metals by self-assembly of sticky nanoparticle aggregates. <i>Science</i>. 2007;316(5822):261-264. doi:<a href=\"https://doi.org/10.1126/science.1139131\">10.1126/science.1139131</a>","apa":"Klajn, R., Bishop, K. J. M., Fialkowski, M., Paszewski, M., Campbell, C. J., Gray, T. P., &#38; Grzybowski, B. A. (2007). Plastic and moldable metals by self-assembly of sticky nanoparticle aggregates. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1139131\">https://doi.org/10.1126/science.1139131</a>","ieee":"R. Klajn <i>et al.</i>, “Plastic and moldable metals by self-assembly of sticky nanoparticle aggregates,” <i>Science</i>, vol. 316, no. 5822. American Association for the Advancement of Science, pp. 261–264, 2007.","mla":"Klajn, Rafal, et al. “Plastic and Moldable Metals by Self-Assembly of Sticky Nanoparticle Aggregates.” <i>Science</i>, vol. 316, no. 5822, American Association for the Advancement of Science, 2007, pp. 261–64, doi:<a href=\"https://doi.org/10.1126/science.1139131\">10.1126/science.1139131</a>."},"author":[{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal","first_name":"Rafal","last_name":"Klajn"},{"full_name":"Bishop, Kyle J. M.","first_name":"Kyle J. M.","last_name":"Bishop"},{"full_name":"Fialkowski, Marcin","last_name":"Fialkowski","first_name":"Marcin"},{"full_name":"Paszewski, Maciej","last_name":"Paszewski","first_name":"Maciej"},{"full_name":"Campbell, Christopher J.","first_name":"Christopher J.","last_name":"Campbell"},{"last_name":"Gray","first_name":"Timothy P.","full_name":"Gray, Timothy P."},{"last_name":"Grzybowski","first_name":"Bartosz A.","full_name":"Grzybowski, Bartosz A."}],"keyword":["Multidisciplinary"],"article_type":"letter_note","year":"2007","oa_version":"None","publication_status":"published","date_published":"2007-04-13T00:00:00Z","type":"journal_article","day":"13","date_updated":"2023-08-08T11:28:29Z","status":"public","date_created":"2023-08-01T10:36:08Z","page":"261-264","pmid":1,"publisher":"American Association for the Advancement of Science","publication":"Science","doi":"10.1126/science.1139131","external_id":{"pmid":["17431176"]},"volume":316,"scopus_import":"1","language":[{"iso":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","abstract":[{"text":"Deformable, spherical aggregates of metal nanoparticles connected by long-chain dithiol ligands self-assemble into nanostructured materials of macroscopic dimensions. These materials are plastic and moldable against arbitrarily shaped masters and can be thermally hardened into polycrystalline metal structures of controllable porosity. In addition, in both plastic and hardened states, the assemblies are electrically conductive and exhibit Ohmic characteristics down to ∼20 volts per meter. The self-assembly method leading to such materials is applicable both to pure metals and to bimetallic structures of various elemental compositions.","lang":"eng"}]},{"volume":17,"author":[{"last_name":"Viney","first_name":"Tim","full_name":"Viney, Tim J"},{"last_name":"Bálint","first_name":"Kamill","full_name":"Bálint, Kamill"},{"first_name":"Dániel","last_name":"Hillier","full_name":"Hillier, Dániel"},{"id":"36ACD32E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8635-0877","first_name":"Sandra","last_name":"Siegert","full_name":"Sandra Siegert"},{"last_name":"Boldogköi","first_name":"Zsolt","full_name":"Boldogköi, Zsolt S"},{"first_name":"Lynn","last_name":"Enquist","full_name":"Enquist, Lynn W"},{"first_name":"Markus","last_name":"Meister","full_name":"Meister, Markus"},{"first_name":"Constance","last_name":"Cepko","full_name":"Cepko, Constance L"},{"full_name":"Roska, Botond M","last_name":"Roska","first_name":"Botond"}],"doi":"10.1016/j.cub.2007.04.058","citation":{"ista":"Viney T, Bálint K, Hillier D, Siegert S, Boldogköi Z, Enquist L, Meister M, Cepko C, Roska B. 2007. Local retinal circuits of melanopsin-containing ganglion cells identified by transsynaptic viral tracing. Current Biology. 17(11), 981–988.","short":"T. Viney, K. Bálint, D. Hillier, S. Siegert, Z. Boldogköi, L. Enquist, M. Meister, C. Cepko, B. Roska, Current Biology 17 (2007) 981–988.","chicago":"Viney, Tim, Kamill Bálint, Dániel Hillier, Sandra Siegert, Zsolt Boldogköi, Lynn Enquist, Markus Meister, Constance Cepko, and Botond Roska. “Local Retinal Circuits of Melanopsin-Containing Ganglion Cells Identified by Transsynaptic Viral Tracing.” <i>Current Biology</i>. Cell Press, 2007. <a href=\"https://doi.org/10.1016/j.cub.2007.04.058\">https://doi.org/10.1016/j.cub.2007.04.058</a>.","ama":"Viney T, Bálint K, Hillier D, et al. Local retinal circuits of melanopsin-containing ganglion cells identified by transsynaptic viral tracing. <i>Current Biology</i>. 2007;17(11):981-988. doi:<a href=\"https://doi.org/10.1016/j.cub.2007.04.058\">10.1016/j.cub.2007.04.058</a>","mla":"Viney, Tim, et al. “Local Retinal Circuits of Melanopsin-Containing Ganglion Cells Identified by Transsynaptic Viral Tracing.” <i>Current Biology</i>, vol. 17, no. 11, Cell Press, 2007, pp. 981–88, doi:<a href=\"https://doi.org/10.1016/j.cub.2007.04.058\">10.1016/j.cub.2007.04.058</a>.","apa":"Viney, T., Bálint, K., Hillier, D., Siegert, S., Boldogköi, Z., Enquist, L., … Roska, B. (2007). Local retinal circuits of melanopsin-containing ganglion cells identified by transsynaptic viral tracing. <i>Current Biology</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cub.2007.04.058\">https://doi.org/10.1016/j.cub.2007.04.058</a>","ieee":"T. Viney <i>et al.</i>, “Local retinal circuits of melanopsin-containing ganglion cells identified by transsynaptic viral tracing,” <i>Current Biology</i>, vol. 17, no. 11. Cell Press, pp. 981–988, 2007."},"issue":"11","month":"06","publication_status":"published","year":"2007","date_published":"2007-06-05T00:00:00Z","abstract":[{"text":"Intrinsically photosensitive melanopsin-containing retinal ganglion cells (ipRGCs) control important physiological processes, including the circadian rhythm, the pupillary reflex, and the suppression of locomotor behavior (reviewed in [1]). ipRGCs are also activated by classical photoreceptors, the rods and cones, through local retinal circuits [2, 3]. ipRGCs can be transsynaptically labeled through the pupillary-reflex circuit with the derivatives of the Bartha strain of the alphaherpesvirus pseudorabies virus(PRV) [4, 5] that express GFP [6-12]. Bartha-strain derivatives spread only in the retrograde direction [13]. There is evidence that infected cells function normally for a while during GFP expression [7]. Here we combine transsynaptic PRV labeling, two-photon laser microscopy, and electrophysiological techniques to trace the local circuit of different ipRGC subtypes in the mouse retina and record light-evoked activity from the transsynaptically labeled ganglion cells. First, we show that ipRGCs are connected by monostratified amacrine cells that provide strong inhibition from classical-photoreceptor-driven circuits. Second, we show evidence that dopaminergic interplexiform cells are synaptically connected to ipRGCs. The latter finding provides a circuitry link between light-dark adaptation and ipRGC function.","lang":"eng"}],"quality_controlled":0,"date_created":"2018-12-11T11:54:04Z","intvolume":"        17","status":"public","day":"05","type":"journal_article","_id":"1797","title":"Local retinal circuits of melanopsin-containing ganglion cells identified by transsynaptic viral tracing","date_updated":"2021-01-12T06:53:15Z","publication":"Current Biology","publisher":"Cell Press","page":"981 - 988","publist_id":"5313","extern":1,"acknowledgement":"This study was supported by Office of Naval Research Multidisciplinary University Research Initiative [ONR MURI] and Naval International Cooperative Opportunities in Science and Technology Program [NICOP] grants, a Marie Curie Excellence Grant, a Human Frontier Science Program [HFSP] Young Investigator grant, and Friedrich Miescher Institute funds to B.R."},{"publication":"Journal of the American Chemical Society","publisher":"American Chemical Society","page":"15768-15769","pmid":1,"status":"public","date_created":"2024-09-09T14:44:32Z","day":"05","type":"journal_article","date_updated":"2025-01-03T10:59:43Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"We compare the low bias conductance of a series of alkanes terminated on their ends with dimethyl phosphines, methyl sulfides, and amines and find that junctions formed with dimethyl phosphine terminated alkanes have the highest conductance. We see unambiguous conductance signatures with these link groups, indicating that the binding is well-defined and electronically selective. This allows a detailed analysis of the single-molecule junction elongation properties which correlate well with calculations based on density functional theory.","lang":"eng"}],"article_processing_charge":"No","scopus_import":"1","language":[{"iso":"eng"}],"OA_type":"closed access","volume":129,"external_id":{"pmid":["18052282"]},"doi":"10.1021/ja0773857","extern":"1","quality_controlled":"1","intvolume":"       129","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"_id":"18035","title":"Contact chemistry and single-molecule conductance:  A comparison of phosphines, methyl sulfides, and amines","oa_version":"None","publication_status":"published","year":"2007","date_published":"2007-12-05T00:00:00Z","article_type":"letter_note","author":[{"full_name":"Park, Young S.","last_name":"Park","first_name":"Young S."},{"full_name":"Whalley, Adam C.","last_name":"Whalley","first_name":"Adam C."},{"full_name":"Kamenetska, Maria","last_name":"Kamenetska","first_name":"Maria"},{"full_name":"Steigerwald, Michael L.","first_name":"Michael L.","last_name":"Steigerwald"},{"full_name":"Hybertsen, Mark S.","last_name":"Hybertsen","first_name":"Mark S."},{"full_name":"Nuckolls, Colin","last_name":"Nuckolls","first_name":"Colin"},{"full_name":"Venkataraman, Latha","first_name":"Latha","last_name":"Venkataraman","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf"}],"citation":{"ama":"Park YS, Whalley AC, Kamenetska M, et al. Contact chemistry and single-molecule conductance:  A comparison of phosphines, methyl sulfides, and amines. <i>Journal of the American Chemical Society</i>. 2007;129(51):15768-15769. doi:<a href=\"https://doi.org/10.1021/ja0773857\">10.1021/ja0773857</a>","apa":"Park, Y. S., Whalley, A. C., Kamenetska, M., Steigerwald, M. L., Hybertsen, M. S., Nuckolls, C., &#38; Venkataraman, L. (2007). Contact chemistry and single-molecule conductance:  A comparison of phosphines, methyl sulfides, and amines. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja0773857\">https://doi.org/10.1021/ja0773857</a>","ieee":"Y. S. Park <i>et al.</i>, “Contact chemistry and single-molecule conductance:  A comparison of phosphines, methyl sulfides, and amines,” <i>Journal of the American Chemical Society</i>, vol. 129, no. 51. American Chemical Society, pp. 15768–15769, 2007.","mla":"Park, Young S., et al. “Contact Chemistry and Single-Molecule Conductance:  A Comparison of Phosphines, Methyl Sulfides, and Amines.” <i>Journal of the American Chemical Society</i>, vol. 129, no. 51, American Chemical Society, 2007, pp. 15768–69, doi:<a href=\"https://doi.org/10.1021/ja0773857\">10.1021/ja0773857</a>.","chicago":"Park, Young S., Adam C. Whalley, Maria Kamenetska, Michael L. Steigerwald, Mark S. Hybertsen, Colin Nuckolls, and Latha Venkataraman. “Contact Chemistry and Single-Molecule Conductance:  A Comparison of Phosphines, Methyl Sulfides, and Amines.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2007. <a href=\"https://doi.org/10.1021/ja0773857\">https://doi.org/10.1021/ja0773857</a>.","short":"Y.S. Park, A.C. Whalley, M. Kamenetska, M.L. Steigerwald, M.S. Hybertsen, C. Nuckolls, L. Venkataraman, Journal of the American Chemical Society 129 (2007) 15768–15769.","ista":"Park YS, Whalley AC, Kamenetska M, Steigerwald ML, Hybertsen MS, Nuckolls C, Venkataraman L. 2007. Contact chemistry and single-molecule conductance:  A comparison of phosphines, methyl sulfides, and amines. Journal of the American Chemical Society. 129(51), 15768–15769."},"issue":"51","month":"12"},{"intvolume":"       111","quality_controlled":"1","_id":"18036","title":"Efficacy of Au−Au contacts for scanning tunneling microscopy molecular conductance measurements","publication_identifier":{"issn":["1932-7447"],"eissn":["1932-7455"]},"extern":"1","author":[{"full_name":"Millar, David","last_name":"Millar","first_name":"David"},{"id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","orcid":"0000-0002-6957-6089","full_name":"Venkataraman, Latha","last_name":"Venkataraman","first_name":"Latha"},{"full_name":"Doerrer, Linda H.","first_name":"Linda H.","last_name":"Doerrer"}],"issue":"47","citation":{"ista":"Millar D, Venkataraman L, Doerrer LH. 2007. Efficacy of Au−Au contacts for scanning tunneling microscopy molecular conductance measurements. The Journal of Physical Chemistry C. 111(47), 17635–17639.","chicago":"Millar, David, Latha Venkataraman, and Linda H. Doerrer. “Efficacy of Au−Au Contacts for Scanning Tunneling Microscopy Molecular Conductance Measurements.” <i>The Journal of Physical Chemistry C</i>. American Chemical Society, 2007. <a href=\"https://doi.org/10.1021/jp0756101\">https://doi.org/10.1021/jp0756101</a>.","short":"D. Millar, L. Venkataraman, L.H. Doerrer, The Journal of Physical Chemistry C 111 (2007) 17635–17639.","ama":"Millar D, Venkataraman L, Doerrer LH. Efficacy of Au−Au contacts for scanning tunneling microscopy molecular conductance measurements. <i>The Journal of Physical Chemistry C</i>. 2007;111(47):17635-17639. doi:<a href=\"https://doi.org/10.1021/jp0756101\">10.1021/jp0756101</a>","mla":"Millar, David, et al. “Efficacy of Au−Au Contacts for Scanning Tunneling Microscopy Molecular Conductance Measurements.” <i>The Journal of Physical Chemistry C</i>, vol. 111, no. 47, American Chemical Society, 2007, pp. 17635–39, doi:<a href=\"https://doi.org/10.1021/jp0756101\">10.1021/jp0756101</a>.","apa":"Millar, D., Venkataraman, L., &#38; Doerrer, L. H. (2007). Efficacy of Au−Au contacts for scanning tunneling microscopy molecular conductance measurements. <i>The Journal of Physical Chemistry C</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jp0756101\">https://doi.org/10.1021/jp0756101</a>","ieee":"D. Millar, L. Venkataraman, and L. H. Doerrer, “Efficacy of Au−Au contacts for scanning tunneling microscopy molecular conductance measurements,” <i>The Journal of Physical Chemistry C</i>, vol. 111, no. 47. American Chemical Society, pp. 17635–17639, 2007."},"month":"11","date_published":"2007-11-02T00:00:00Z","oa_version":"None","publication_status":"published","year":"2007","article_type":"original","date_created":"2024-09-09T14:45:13Z","status":"public","date_updated":"2025-01-03T11:02:03Z","day":"02","type":"journal_article","publication":"The Journal of Physical Chemistry C","publisher":"American Chemical Society","page":"17635-17639","volume":111,"doi":"10.1021/jp0756101","abstract":[{"lang":"eng","text":"We measured conductance traces while breaking gold point contacts in a solution of molecules containing the μ-p-phenylenediethynyl X−C⋮C−C6H4−C⋮C−X unit, with eight different capping X groups:  Au−P(OMe)3 (1), H (2), SiMe3 (3), Au−P(cy)3 (4), Au−PMe2Ph (5), Au−PMePh2 (6), Au−PMe3 (7), and Au−PPh3 (8). Our goal with this work was to achieve a direct Au−C link with a conjugated organic group, potentially forming a molecular junction without chemical link groups that typically decrease junction conductances, such as thiols or amines. Conductance traces collected in the presence of molecules 1, 2, 3, 5, and 7 reveal additional steps at conductances as high as 0.1 G0 (G0 = 2e2/h) down to the measurable limits of the experimental setup. Conductance histograms generated from these traces therefore show a broad increase of counts when compared to a control histogram collected in the solvent alone suggesting the binding of the molecules to the broken Au contacts. The histograms for molecules 1, 5, 7, and 2 were not distinguishable, although that of molecule 3 had considerably fewer counts over the entire conductance range, suggesting that the steric bulk of the SiMe3 prevented frequent junction formation. The histograms collected in a solution of molecules 4, 6, or 8 did not differ from that of the control histogram probably because of the steric bulk of the Au−PR3 capping groups prevented the formation a molecular junction."}],"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_type":"closed access","language":[{"iso":"eng"}],"scopus_import":"1"},{"publication":"Nano Letters","publisher":"American Chemical Society","pmid":1,"page":"3477-3482","status":"public","date_created":"2024-09-09T14:52:18Z","date_updated":"2025-01-03T11:04:27Z","arxiv":1,"day":"27","type":"journal_article","abstract":[{"lang":"eng","text":"A combination of theory and experiment is used to quantitatively understand the conductance of single-molecule benzenediamine−gold junctions. A newly developed analysis is applied to a measured junction conductance distribution, based on 59 000 individual conductance traces, which has a clear peak at 0.0064 G0 and a width of ±47%. This analysis establishes that the distribution width originates predominantly from variations in conductance across different junctions rather than variations in conductance during junction elongation. Conductance calculations based on density functional theory (DFT) for 15 distinct junction geometries show a similar spread. We show explicitly that differences in local structure have a limited influence on conductance because the amine−Au bonding motif is well-defined and flexible, explaining the narrow distributions seen in the experiments. The minimal impact of junction structure on conductance permits an unambiguous comparison of calculated and measured conductance values and a direct assessment of the widely used DFT theoretical framework. The average calculated conductance (0.046 G0) is found to be seven times larger than experiment. This discrepancy is explained quantitatively in terms of electron correlation effects to the molecular level alignments in the junction."}],"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","OA_type":"green","language":[{"iso":"eng"}],"scopus_import":"1","volume":7,"external_id":{"pmid":["17900162"],"arxiv":["0707.2091"]},"doi":"10.1021/nl072058i","oa":1,"extern":"1","main_file_link":[{"url":"https://arxiv.org/abs/0707.2091","open_access":"1"}],"intvolume":"         7","quality_controlled":"1","_id":"18037","title":"Amine−gold linked single-molecule circuits:  Experiment and theory","publication_identifier":{"issn":["1530-6984"],"eissn":["1530-6992"]},"OA_place":"repository","date_published":"2007-09-27T00:00:00Z","oa_version":"Preprint","publication_status":"published","year":"2007","article_type":"letter_note","author":[{"full_name":"Quek, Su Ying","last_name":"Quek","first_name":"Su Ying"},{"orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","full_name":"Venkataraman, Latha","last_name":"Venkataraman","first_name":"Latha"},{"last_name":"Choi","first_name":"Hyoung Joon","full_name":"Choi, Hyoung Joon"},{"last_name":"Louie","first_name":"Steven G.","full_name":"Louie, Steven G."},{"full_name":"Hybertsen, Mark S.","first_name":"Mark S.","last_name":"Hybertsen"},{"last_name":"Neaton","first_name":"J. B.","full_name":"Neaton, J. B."}],"citation":{"ieee":"S. Y. Quek, L. Venkataraman, H. J. Choi, S. G. Louie, M. S. Hybertsen, and J. B. Neaton, “Amine−gold linked single-molecule circuits:  Experiment and theory,” <i>Nano Letters</i>, vol. 7, no. 11. American Chemical Society, pp. 3477–3482, 2007.","apa":"Quek, S. Y., Venkataraman, L., Choi, H. J., Louie, S. G., Hybertsen, M. S., &#38; Neaton, J. B. (2007). Amine−gold linked single-molecule circuits:  Experiment and theory. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/nl072058i\">https://doi.org/10.1021/nl072058i</a>","mla":"Quek, Su Ying, et al. “Amine−gold Linked Single-Molecule Circuits:  Experiment and Theory.” <i>Nano Letters</i>, vol. 7, no. 11, American Chemical Society, 2007, pp. 3477–82, doi:<a href=\"https://doi.org/10.1021/nl072058i\">10.1021/nl072058i</a>.","ama":"Quek SY, Venkataraman L, Choi HJ, Louie SG, Hybertsen MS, Neaton JB. Amine−gold linked single-molecule circuits:  Experiment and theory. <i>Nano Letters</i>. 2007;7(11):3477-3482. doi:<a href=\"https://doi.org/10.1021/nl072058i\">10.1021/nl072058i</a>","short":"S.Y. Quek, L. Venkataraman, H.J. Choi, S.G. Louie, M.S. Hybertsen, J.B. Neaton, Nano Letters 7 (2007) 3477–3482.","chicago":"Quek, Su Ying, Latha Venkataraman, Hyoung Joon Choi, Steven G. Louie, Mark S. Hybertsen, and J. B. Neaton. “Amine−gold Linked Single-Molecule Circuits:  Experiment and Theory.” <i>Nano Letters</i>. American Chemical Society, 2007. <a href=\"https://doi.org/10.1021/nl072058i\">https://doi.org/10.1021/nl072058i</a>.","ista":"Quek SY, Venkataraman L, Choi HJ, Louie SG, Hybertsen MS, Neaton JB. 2007. Amine−gold linked single-molecule circuits:  Experiment and theory. Nano Letters. 7(11), 3477–3482."},"issue":"11","month":"09"},{"date_created":"2024-09-09T14:52:57Z","status":"public","day":"22","type":"journal_article","date_updated":"2025-01-03T11:06:28Z","publication":"Journal of the American Chemical Society","publisher":"American Chemical Society","page":"12376-12377","pmid":1,"volume":129,"external_id":{"pmid":["17887757"]},"doi":"10.1021/ja0745097","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Cyclic voltammetry determines first and second oxidation potentials of conducting diamines. The results show that unsubstituted and methyl-substituted molecules conduct electricity in partially positively charged states, reflecting electron delocalization at the wire−gold junctions, but with electron-withdrawing substituents, the molecular wires are closer to uncharged as conductors, consistent with HOMO arguments."}],"article_processing_charge":"No","scopus_import":"1","OA_type":"closed access","language":[{"iso":"eng"}],"quality_controlled":"1","intvolume":"       129","publication_identifier":{"eissn":["1520-5126"],"issn":["0002-7863"]},"_id":"18038","title":"Oxidation potentials correlate with conductivities of aromatic molecular wires","extern":"1","author":[{"full_name":"Quinn, Jordan R.","first_name":"Jordan R.","last_name":"Quinn"},{"full_name":"Foss, Frank W.","last_name":"Foss","first_name":"Frank W."},{"id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","orcid":"0000-0002-6957-6089","full_name":"Venkataraman, Latha","last_name":"Venkataraman","first_name":"Latha"},{"full_name":"Breslow, Ronald","last_name":"Breslow","first_name":"Ronald"}],"citation":{"short":"J.R. Quinn, F.W. Foss, L. Venkataraman, R. Breslow, Journal of the American Chemical Society 129 (2007) 12376–12377.","chicago":"Quinn, Jordan R., Frank W. Foss, Latha Venkataraman, and Ronald Breslow. “Oxidation Potentials Correlate with Conductivities of Aromatic Molecular Wires.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2007. <a href=\"https://doi.org/10.1021/ja0745097\">https://doi.org/10.1021/ja0745097</a>.","ista":"Quinn JR, Foss FW, Venkataraman L, Breslow R. 2007. Oxidation potentials correlate with conductivities of aromatic molecular wires. Journal of the American Chemical Society. 129(41), 12376–12377.","ieee":"J. R. Quinn, F. W. Foss, L. Venkataraman, and R. Breslow, “Oxidation potentials correlate with conductivities of aromatic molecular wires,” <i>Journal of the American Chemical Society</i>, vol. 129, no. 41. American Chemical Society, pp. 12376–12377, 2007.","apa":"Quinn, J. R., Foss, F. W., Venkataraman, L., &#38; Breslow, R. (2007). Oxidation potentials correlate with conductivities of aromatic molecular wires. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja0745097\">https://doi.org/10.1021/ja0745097</a>","mla":"Quinn, Jordan R., et al. “Oxidation Potentials Correlate with Conductivities of Aromatic Molecular Wires.” <i>Journal of the American Chemical Society</i>, vol. 129, no. 41, American Chemical Society, 2007, pp. 12376–77, doi:<a href=\"https://doi.org/10.1021/ja0745097\">10.1021/ja0745097</a>.","ama":"Quinn JR, Foss FW, Venkataraman L, Breslow R. Oxidation potentials correlate with conductivities of aromatic molecular wires. <i>Journal of the American Chemical Society</i>. 2007;129(41):12376-12377. doi:<a href=\"https://doi.org/10.1021/ja0745097\">10.1021/ja0745097</a>"},"issue":"41","month":"09","publication_status":"published","oa_version":"None","year":"2007","date_published":"2007-09-22T00:00:00Z","article_type":"letter_note"},{"type":"journal_article","day":"09","date_updated":"2025-01-03T11:08:39Z","arxiv":1,"status":"public","date_created":"2024-09-09T14:53:43Z","page":"6714-6715","pmid":1,"publisher":"American Chemical Society","publication":"Journal of the American Chemical Society","doi":"10.1021/ja0715804","external_id":{"arxiv":["0705.3374"],"pmid":["17488083"]},"volume":129,"scopus_import":"1","language":[{"iso":"eng"}],"OA_type":"green","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","abstract":[{"lang":"eng","text":"Conductivities have been measured for diaminoacenes with benzene, naphthalene, and anthracene rings. The conductivities were strong functions of the placement of the amino group contact points for the gold electrodes. There was good correlation with quantum-mechanical theory, and with the stabilities of the related mono- and dications of the molecules. It is proposed that some electron abstraction by the drain precedes electron donation by the source with these electron-rich systems."}],"publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"title":"Single-molecule junction conductance through diaminoacenes","_id":"18039","quality_controlled":"1","intvolume":"       129","main_file_link":[{"url":"https://arxiv.org/abs/0705.3374","open_access":"1"}],"extern":"1","oa":1,"month":"05","issue":"21","citation":{"ieee":"J. R. Quinn, F. W. Foss, L. Venkataraman, M. S. Hybertsen, and R. Breslow, “Single-molecule junction conductance through diaminoacenes,” <i>Journal of the American Chemical Society</i>, vol. 129, no. 21. American Chemical Society, pp. 6714–6715, 2007.","apa":"Quinn, J. R., Foss, F. W., Venkataraman, L., Hybertsen, M. S., &#38; Breslow, R. (2007). Single-molecule junction conductance through diaminoacenes. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja0715804\">https://doi.org/10.1021/ja0715804</a>","mla":"Quinn, Jordan R., et al. “Single-Molecule Junction Conductance through Diaminoacenes.” <i>Journal of the American Chemical Society</i>, vol. 129, no. 21, American Chemical Society, 2007, pp. 6714–15, doi:<a href=\"https://doi.org/10.1021/ja0715804\">10.1021/ja0715804</a>.","ama":"Quinn JR, Foss FW, Venkataraman L, Hybertsen MS, Breslow R. Single-molecule junction conductance through diaminoacenes. <i>Journal of the American Chemical Society</i>. 2007;129(21):6714-6715. doi:<a href=\"https://doi.org/10.1021/ja0715804\">10.1021/ja0715804</a>","short":"J.R. Quinn, F.W. Foss, L. Venkataraman, M.S. Hybertsen, R. Breslow, Journal of the American Chemical Society 129 (2007) 6714–6715.","chicago":"Quinn, Jordan R., Frank W. Foss, Latha Venkataraman, Mark S. Hybertsen, and Ronald Breslow. “Single-Molecule Junction Conductance through Diaminoacenes.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2007. <a href=\"https://doi.org/10.1021/ja0715804\">https://doi.org/10.1021/ja0715804</a>.","ista":"Quinn JR, Foss FW, Venkataraman L, Hybertsen MS, Breslow R. 2007. Single-molecule junction conductance through diaminoacenes. Journal of the American Chemical Society. 129(21), 6714–6715."},"author":[{"full_name":"Quinn, Jordan R.","last_name":"Quinn","first_name":"Jordan R."},{"last_name":"Foss","first_name":"Frank W.","full_name":"Foss, Frank W."},{"last_name":"Venkataraman","first_name":"Latha","full_name":"Venkataraman, Latha","orcid":"0000-0002-6957-6089","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf"},{"last_name":"Hybertsen","first_name":"Mark S.","full_name":"Hybertsen, Mark S."},{"full_name":"Breslow, Ronald","last_name":"Breslow","first_name":"Ronald"}],"article_type":"original","year":"2007","publication_status":"published","oa_version":"Preprint","OA_place":"repository","date_published":"2007-05-09T00:00:00Z"},{"article_type":"letter_note","publication_status":"published","oa_version":"Preprint","year":"2007","OA_place":"repository","date_published":"2007-01-25T00:00:00Z","citation":{"ista":"Venkataraman L, Park YS, Whalley AC, Nuckolls C, Hybertsen MS, Steigerwald ML. 2007. Electronics and dhemistry:  Varying single-molecule junction conductance using chemical substituents. Nano Letters. 7(2), 502–506.","chicago":"Venkataraman, Latha, Young S. Park, Adam C. Whalley, Colin Nuckolls, Mark S. Hybertsen, and Michael L. Steigerwald. “Electronics and Dhemistry:  Varying Single-Molecule Junction Conductance Using Chemical Substituents.” <i>Nano Letters</i>. American Chemical Society, 2007. <a href=\"https://doi.org/10.1021/nl062923j\">https://doi.org/10.1021/nl062923j</a>.","short":"L. Venkataraman, Y.S. Park, A.C. Whalley, C. Nuckolls, M.S. Hybertsen, M.L. Steigerwald, Nano Letters 7 (2007) 502–506.","mla":"Venkataraman, Latha, et al. “Electronics and Dhemistry:  Varying Single-Molecule Junction Conductance Using Chemical Substituents.” <i>Nano Letters</i>, vol. 7, no. 2, American Chemical Society, 2007, pp. 502–06, doi:<a href=\"https://doi.org/10.1021/nl062923j\">10.1021/nl062923j</a>.","apa":"Venkataraman, L., Park, Y. S., Whalley, A. C., Nuckolls, C., Hybertsen, M. S., &#38; Steigerwald, M. L. (2007). Electronics and dhemistry:  Varying single-molecule junction conductance using chemical substituents. <i>Nano Letters</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/nl062923j\">https://doi.org/10.1021/nl062923j</a>","ieee":"L. Venkataraman, Y. S. Park, A. C. Whalley, C. Nuckolls, M. S. Hybertsen, and M. L. Steigerwald, “Electronics and dhemistry:  Varying single-molecule junction conductance using chemical substituents,” <i>Nano Letters</i>, vol. 7, no. 2. American Chemical Society, pp. 502–506, 2007.","ama":"Venkataraman L, Park YS, Whalley AC, Nuckolls C, Hybertsen MS, Steigerwald ML. Electronics and dhemistry:  Varying single-molecule junction conductance using chemical substituents. <i>Nano Letters</i>. 2007;7(2):502-506. doi:<a href=\"https://doi.org/10.1021/nl062923j\">10.1021/nl062923j</a>"},"issue":"2","month":"01","author":[{"id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf","orcid":"0000-0002-6957-6089","full_name":"Venkataraman, Latha","last_name":"Venkataraman","first_name":"Latha"},{"first_name":"Young S.","last_name":"Park","full_name":"Park, Young S."},{"full_name":"Whalley, Adam C.","first_name":"Adam C.","last_name":"Whalley"},{"full_name":"Nuckolls, Colin","first_name":"Colin","last_name":"Nuckolls"},{"first_name":"Mark S.","last_name":"Hybertsen","full_name":"Hybertsen, Mark S."},{"full_name":"Steigerwald, Michael L.","last_name":"Steigerwald","first_name":"Michael L."}],"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/cond-mat/0703446"}],"extern":"1","oa":1,"publication_identifier":{"issn":["1530-6984"],"eissn":["1530-6992"]},"_id":"18040","title":"Electronics and dhemistry:  Varying single-molecule junction conductance using chemical substituents","quality_controlled":"1","intvolume":"         7","scopus_import":"1","language":[{"iso":"eng"}],"OA_type":"green","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"We measure the low bias conductance of a series of substituted benzene diamine molecules while breaking a gold point contact in a solution of the molecules. Transport through these substituted benzenes is by means of nonresonant tunneling or superexchange, with the molecular junction conductance depending on the alignment of the metal Fermi level to the closest molecular level. Electron-donating substituents, which drive the occupied molecular orbitals up, increase the junction conductance, while electron-withdrawing substituents have the opposite effect. Thus for the measured series, conductance varies inversely with the calculated ionization potential of the molecules. These results reveal that the occupied states are closest to the gold Fermi energy, indicating that the tunneling transport through these molecules is analogous to hole tunneling through an insulating film."}],"article_processing_charge":"No","external_id":{"pmid":["17253760"],"arxiv":["cond-mat/0703446"]},"doi":"10.1021/nl062923j","volume":7,"page":"502-506","pmid":1,"publication":"Nano Letters","publisher":"American Chemical Society","day":"25","type":"journal_article","arxiv":1,"date_updated":"2025-01-03T11:11:01Z","status":"public","date_created":"2024-09-09T15:06:38Z"},{"volume":4485,"author":[{"full_name":"Bronstein, Alexander","first_name":"Alexander","last_name":"Bronstein","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","orcid":"0000-0001-9699-8730"},{"full_name":"Bronstein, Michael M.","last_name":"Bronstein","first_name":"Michael M."},{"full_name":"Bruckstein, Alfred M.","first_name":"Alfred M.","last_name":"Bruckstein"},{"last_name":"Kimmel","first_name":"Ron","full_name":"Kimmel, Ron"}],"citation":{"mla":"Bronstein, Alex M., et al. “Paretian Similarity for Partial Comparison of Non-Rigid Objects.” <i>First International Conference on Scale Space and Variational Methods in Computer Vision</i>, vol. 4485, Springer Nature, 2007, pp. 264–75, doi:<a href=\"https://doi.org/10.1007/978-3-540-72823-8_23\">10.1007/978-3-540-72823-8_23</a>.","apa":"Bronstein, A. M., Bronstein, M. M., Bruckstein, A. M., &#38; Kimmel, R. (2007). Paretian similarity for partial comparison of non-rigid objects. In <i>First International Conference on Scale Space and Variational Methods in Computer Vision</i> (Vol. 4485, pp. 264–275). Ischia, Italy: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-540-72823-8_23\">https://doi.org/10.1007/978-3-540-72823-8_23</a>","ieee":"A. M. Bronstein, M. M. Bronstein, A. M. Bruckstein, and R. Kimmel, “Paretian similarity for partial comparison of non-rigid objects,” in <i>First International Conference on Scale Space and Variational Methods in Computer Vision</i>, Ischia, Italy, 2007, vol. 4485, pp. 264–275.","ama":"Bronstein AM, Bronstein MM, Bruckstein AM, Kimmel R. Paretian similarity for partial comparison of non-rigid objects. In: <i>First International Conference on Scale Space and Variational Methods in Computer Vision</i>. Vol 4485. Springer Nature; 2007:264-275. doi:<a href=\"https://doi.org/10.1007/978-3-540-72823-8_23\">10.1007/978-3-540-72823-8_23</a>","ista":"Bronstein AM, Bronstein MM, Bruckstein AM, Kimmel R. 2007. Paretian similarity for partial comparison of non-rigid objects. First International Conference on Scale Space and Variational Methods in Computer Vision. SSVM: Scape Space and Variational Methods in Computer Vision, LNCS, vol. 4485, 264–275.","short":"A.M. Bronstein, M.M. Bronstein, A.M. Bruckstein, R. Kimmel, in:, First International Conference on Scale Space and Variational Methods in Computer Vision, Springer Nature, 2007, pp. 264–275.","chicago":"Bronstein, Alex M., Michael M. Bronstein, Alfred M. Bruckstein, and Ron Kimmel. “Paretian Similarity for Partial Comparison of Non-Rigid Objects.” In <i>First International Conference on Scale Space and Variational Methods in Computer Vision</i>, 4485:264–75. Springer Nature, 2007. <a href=\"https://doi.org/10.1007/978-3-540-72823-8_23\">https://doi.org/10.1007/978-3-540-72823-8_23</a>."},"month":"06","doi":"10.1007/978-3-540-72823-8_23","abstract":[{"text":"In this paper, we address the problem of partial comparison of non-rigid objects. We introduce a new class of set-valued distances, related to the concept of Pareto optimality in economics. Such distances allow to capture intrinsic geometric similarity between parts of non-rigid objects, obtaining semantically meaningful comparison results. The numerical implementation of our method is computationally efficient and is similar to GMDS, a multidimensional scaling-like continuous optimization problem.","lang":"eng"}],"date_published":"2007-06-15T00:00:00Z","article_processing_charge":"No","oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","year":"2007","language":[{"iso":"eng"}],"scopus_import":"1","status":"public","intvolume":"      4485","date_created":"2024-10-15T11:20:54Z","quality_controlled":"1","alternative_title":["LNCS"],"_id":"18336","title":"Paretian similarity for partial comparison of non-rigid objects","date_updated":"2024-11-18T10:05:10Z","day":"15","type":"conference","publication_identifier":{"eisbn":["9783540728238"],"isbn":["9783540728221"]},"publication":"First International Conference on Scale Space and Variational Methods in Computer Vision","publisher":"Springer Nature","extern":"1","page":"264-275","conference":{"start_date":"2007-05-30","end_date":"2007-06-02","name":"SSVM: Scape Space and Variational Methods in Computer Vision","location":"Ischia, Italy"}},{"_id":"18367","date_updated":"2024-10-21T09:09:42Z","title":"Weighted distance maps computation on parametric three-dimensional manifolds","day":"20","publication_identifier":{"issn":["0021-9991"]},"type":"journal_article","date_created":"2024-10-15T11:20:54Z","intvolume":"       225","status":"public","quality_controlled":"1","extern":"1","page":"771-784","publication":"Journal of Computational Physics","publisher":"Elsevier","citation":{"chicago":"Bronstein, Alex M., Michael M. Bronstein, and Ron Kimmel. “Weighted Distance Maps Computation on Parametric Three-Dimensional Manifolds.” <i>Journal of Computational Physics</i>. Elsevier, 2007. <a href=\"https://doi.org/10.1016/j.jcp.2007.01.009\">https://doi.org/10.1016/j.jcp.2007.01.009</a>.","short":"A.M. Bronstein, M.M. Bronstein, R. Kimmel, Journal of Computational Physics 225 (2007) 771–784.","ista":"Bronstein AM, Bronstein MM, Kimmel R. 2007. Weighted distance maps computation on parametric three-dimensional manifolds. Journal of Computational Physics. 225(1), 771–784.","apa":"Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2007). Weighted distance maps computation on parametric three-dimensional manifolds. <i>Journal of Computational Physics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jcp.2007.01.009\">https://doi.org/10.1016/j.jcp.2007.01.009</a>","ieee":"A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “Weighted distance maps computation on parametric three-dimensional manifolds,” <i>Journal of Computational Physics</i>, vol. 225, no. 1. Elsevier, pp. 771–784, 2007.","mla":"Bronstein, Alex M., et al. “Weighted Distance Maps Computation on Parametric Three-Dimensional Manifolds.” <i>Journal of Computational Physics</i>, vol. 225, no. 1, Elsevier, 2007, pp. 771–84, doi:<a href=\"https://doi.org/10.1016/j.jcp.2007.01.009\">10.1016/j.jcp.2007.01.009</a>.","ama":"Bronstein AM, Bronstein MM, Kimmel R. Weighted distance maps computation on parametric three-dimensional manifolds. <i>Journal of Computational Physics</i>. 2007;225(1):771-784. doi:<a href=\"https://doi.org/10.1016/j.jcp.2007.01.009\">10.1016/j.jcp.2007.01.009</a>"},"issue":"1","month":"01","doi":"10.1016/j.jcp.2007.01.009","volume":225,"author":[{"orcid":"0000-0001-9699-8730","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","full_name":"Bronstein, Alexander","last_name":"Bronstein","first_name":"Alexander"},{"first_name":"Michael M.","last_name":"Bronstein","full_name":"Bronstein, Michael M."},{"full_name":"Kimmel, Ron","last_name":"Kimmel","first_name":"Ron"}],"language":[{"iso":"eng"}],"scopus_import":"1","article_type":"original","abstract":[{"lang":"eng","text":"We propose an efficient computational solver for eikonal equations on parametric three-dimensional manifolds. Our\r\napproach is based on the fast marching method for solving the eikonal equation in ð(n log n) steps on n grid points by\r\nnumerically simulating wavefront propagation. The obtuse angle splitting problem is reformulated as a set of small integer\r\nlinear programs, that can be solved in ð(n). Numerical simulations demonstrate the accuracy of the proposed algorithm."}],"date_published":"2007-01-20T00:00:00Z","article_processing_charge":"No","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"None","year":"2007"}]