[{"arxiv":1,"main_file_link":[{"url":"https://arxiv.org/abs/0901.1139","open_access":"1"}],"_id":"18031","language":[{"iso":"eng"}],"type":"journal_article","pmid":1,"extern":"1","OA_type":"green","volume":4,"issue":"4","publication_identifier":{"eissn":["1748-3395"],"issn":["1748-3387"]},"date_published":"2009-04-01T00:00:00Z","oa":1,"publication":"Nature Nanotechnology","author":[{"full_name":"Quek, Su Ying","first_name":"Su Ying","last_name":"Quek"},{"first_name":"Maria","full_name":"Kamenetska, Maria","last_name":"Kamenetska"},{"full_name":"Steigerwald, Michael L.","first_name":"Michael L.","last_name":"Steigerwald"},{"last_name":"Choi","full_name":"Choi, Hyoung Joon","first_name":"Hyoung Joon"},{"last_name":"Louie","full_name":"Louie, Steven G.","first_name":"Steven G."},{"full_name":"Hybertsen, Mark S.","first_name":"Mark S.","last_name":"Hybertsen"},{"last_name":"Neaton","first_name":"J. B.","full_name":"Neaton, J. B."},{"last_name":"Venkataraman","orcid":"0000-0002-6957-6089","first_name":"Latha","full_name":"Venkataraman, Latha","id":"9ebb78a5-cc0d-11ee-8322-fae086a32caf"}],"abstract":[{"lang":"eng","text":"Molecular-scale components are expected to be central to the realization of nanoscale electronic devices1,2,3. Although molecular-scale switching has been reported in atomic quantum point contacts4,5,6, single-molecule junctions provide the additional flexibility of tuning the on/off conductance states through molecular design. To date, switching in single-molecule junctions has been attributed to changes in the conformation or charge state of the molecule7,8,9,10,11,12. Here, we demonstrate reversible binary switching in a single-molecule junction by mechanical control of the metal–molecule contact geometry. We show that 4,4'-bipyridine–gold single-molecule junctions can be reversibly switched between two conductance states through repeated junction elongation and compression. Using first-principles calculations, we attribute the different measured conductance states to distinct contact geometries at the flexible but stable nitrogen–gold bond: conductance is low when the N–Au bond is perpendicular to the conducting π-system, and high otherwise. This switching mechanism, inherent to the pyridine–gold link, could form the basis of a new class of mechanically activated single-molecule switches."}],"OA_place":"repository","quality_controlled":"1","publication_status":"published","citation":{"ieee":"S. Y. Quek <i>et al.</i>, “Mechanically controlled binary conductance switching of a single-molecule junction,” <i>Nature Nanotechnology</i>, vol. 4, no. 4. Springer Nature, pp. 230–234, 2009.","mla":"Quek, Su Ying, et al. “Mechanically Controlled Binary Conductance Switching of a Single-Molecule Junction.” <i>Nature Nanotechnology</i>, vol. 4, no. 4, Springer Nature, 2009, pp. 230–34, doi:<a href=\"https://doi.org/10.1038/nnano.2009.10\">10.1038/nnano.2009.10</a>.","ista":"Quek SY, Kamenetska M, Steigerwald ML, Choi HJ, Louie SG, Hybertsen MS, Neaton JB, Venkataraman L. 2009. Mechanically controlled binary conductance switching of a single-molecule junction. Nature Nanotechnology. 4(4), 230–234.","chicago":"Quek, Su Ying, Maria Kamenetska, Michael L. Steigerwald, Hyoung Joon Choi, Steven G. Louie, Mark S. Hybertsen, J. B. Neaton, and Latha Venkataraman. “Mechanically Controlled Binary Conductance Switching of a Single-Molecule Junction.” <i>Nature Nanotechnology</i>. Springer Nature, 2009. <a href=\"https://doi.org/10.1038/nnano.2009.10\">https://doi.org/10.1038/nnano.2009.10</a>.","ama":"Quek SY, Kamenetska M, Steigerwald ML, et al. Mechanically controlled binary conductance switching of a single-molecule junction. <i>Nature Nanotechnology</i>. 2009;4(4):230-234. doi:<a href=\"https://doi.org/10.1038/nnano.2009.10\">10.1038/nnano.2009.10</a>","short":"S.Y. Quek, M. Kamenetska, M.L. Steigerwald, H.J. Choi, S.G. Louie, M.S. Hybertsen, J.B. Neaton, L. Venkataraman, Nature Nanotechnology 4 (2009) 230–234.","apa":"Quek, S. Y., Kamenetska, M., Steigerwald, M. L., Choi, H. J., Louie, S. G., Hybertsen, M. S., … Venkataraman, L. (2009). Mechanically controlled binary conductance switching of a single-molecule junction. <i>Nature Nanotechnology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/nnano.2009.10\">https://doi.org/10.1038/nnano.2009.10</a>"},"oa_version":"Preprint","status":"public","intvolume":"         4","date_updated":"2025-01-03T10:42:35Z","date_created":"2024-09-09T13:53:36Z","day":"01","publisher":"Springer Nature","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"04","scopus_import":"1","title":"Mechanically controlled binary conductance switching of a single-molecule junction","article_type":"letter_note","article_processing_charge":"No","external_id":{"arxiv":["0901.1139"],"pmid":["19350032"]},"doi":"10.1038/nnano.2009.10","year":"2009","page":"230-234"},{"publication_status":"published","citation":{"chicago":"Friedlander, Tamar, and Naama Brenner. “Adaptive Response by State-Dependent Inactivation.” <i>PNAS</i>. National Academy of Sciences, 2009. <a href=\"https://doi.org/10.1073/pnas.0902146106 \">https://doi.org/10.1073/pnas.0902146106 </a>.","short":"T. Friedlander, N. Brenner, PNAS 106 (2009) 22558–22563.","ama":"Friedlander T, Brenner N. Adaptive response by state-dependent inactivation. <i>PNAS</i>. 2009;106(52):22558-22563. doi:<a href=\"https://doi.org/10.1073/pnas.0902146106 \">10.1073/pnas.0902146106 </a>","apa":"Friedlander, T., &#38; Brenner, N. (2009). Adaptive response by state-dependent inactivation. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.0902146106 \">https://doi.org/10.1073/pnas.0902146106 </a>","ieee":"T. Friedlander and N. Brenner, “Adaptive response by state-dependent inactivation,” <i>PNAS</i>, vol. 106, no. 52. National Academy of Sciences, pp. 22558–22563, 2009.","mla":"Friedlander, Tamar, and Naama Brenner. “Adaptive Response by State-Dependent Inactivation.” <i>PNAS</i>, vol. 106, no. 52, National Academy of Sciences, 2009, pp. 22558–63, doi:<a href=\"https://doi.org/10.1073/pnas.0902146106 \">10.1073/pnas.0902146106 </a>.","ista":"Friedlander T, Brenner N. 2009. Adaptive response by state-dependent inactivation. PNAS. 106(52), 22558–22563."},"publist_id":"5281","title":"Adaptive response by state-dependent inactivation","quality_controlled":0,"page":"22558 - 22563","year":"2009","doi":"10.1073/pnas.0902146106 ","author":[{"last_name":"Friedlander","full_name":"Tamar Friedlander","id":"36A5845C-F248-11E8-B48F-1D18A9856A87","first_name":"Tamar"},{"first_name":"Naama","full_name":"Brenner, Naama","last_name":"Brenner"}],"publication":"PNAS","month":"12","date_published":"2009-12-01T00:00:00Z","oa":1,"abstract":[{"text":"Many membrane channels and receptors exhibit adaptive, or desensitized, response to a strong sustained input stimulus. A key mechanism that underlies this response is the slow, activity-dependent removal of responding molecules to a pool which is unavailable to respond immediately to the input. This mechanism is implemented in different ways in various biological systems and has traditionally been studied separately for each. Here we highlight the common aspects of this principle, shared by many biological systems, and suggest a unifying theoretical framework. We study theoretically a class of models which describes the general mechanism and allows us to distinguish its universal from system-specific features. We show that under general conditions, regardless of the details of kinetics, molecule availability encodes an averaging over past activity and feeds back multiplicatively on the system output. The kinetics of recovery from unavailability determines the effective memory kernel inside the feedback branch, giving rise to a variety of system-specific forms of adaptive response—precise or input-dependent, exponential or power-law—as special cases of the same model. ","lang":"eng"}],"_id":"1825","main_file_link":[{"open_access":"1","url":"http://www.pnas.org/content/106/52/22558.full.pdf"}],"publisher":"National Academy of Sciences","issue":"52","extern":1,"volume":106,"type":"journal_article","intvolume":"       106","status":"public","day":"01","date_updated":"2021-01-12T06:53:26Z","date_created":"2018-12-11T11:54:13Z"},{"issue":"2","publication_identifier":{"issn":["0920-5691"],"eissn":["1573-1405"]},"OA_type":"closed access","volume":84,"extern":"1","type":"journal_article","language":[{"iso":"eng"}],"_id":"18356","oa_version":"None","citation":{"apa":"Bronstein, A. M., Bronstein, M. M., Bruckstein, A. M., &#38; Kimmel, R. (2009). Partial similarity of objects, or how to compare a centaur to a horse. <i>International Journal of Computer Vision</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11263-008-0147-3\">https://doi.org/10.1007/s11263-008-0147-3</a>","short":"A.M. Bronstein, M.M. Bronstein, A.M. Bruckstein, R. Kimmel, International Journal of Computer Vision 84 (2009) 163–183.","ama":"Bronstein AM, Bronstein MM, Bruckstein AM, Kimmel R. Partial similarity of objects, or how to compare a centaur to a horse. <i>International Journal of Computer Vision</i>. 2009;84(2):163-183. doi:<a href=\"https://doi.org/10.1007/s11263-008-0147-3\">10.1007/s11263-008-0147-3</a>","chicago":"Bronstein, Alex M., Michael M. Bronstein, Alfred M. Bruckstein, and Ron Kimmel. “Partial Similarity of Objects, or How to Compare a Centaur to a Horse.” <i>International Journal of Computer Vision</i>. Springer Nature, 2009. <a href=\"https://doi.org/10.1007/s11263-008-0147-3\">https://doi.org/10.1007/s11263-008-0147-3</a>.","ista":"Bronstein AM, Bronstein MM, Bruckstein AM, Kimmel R. 2009. Partial similarity of objects, or how to compare a centaur to a horse. International Journal of Computer Vision. 84(2), 163–183.","ieee":"A. M. Bronstein, M. M. Bronstein, A. M. Bruckstein, and R. Kimmel, “Partial similarity of objects, or how to compare a centaur to a horse,” <i>International Journal of Computer Vision</i>, vol. 84, no. 2. Springer Nature, pp. 163–183, 2009.","mla":"Bronstein, Alex M., et al. “Partial Similarity of Objects, or How to Compare a Centaur to a Horse.” <i>International Journal of Computer Vision</i>, vol. 84, no. 2, Springer Nature, 2009, pp. 163–83, doi:<a href=\"https://doi.org/10.1007/s11263-008-0147-3\">10.1007/s11263-008-0147-3</a>."},"publication_status":"published","quality_controlled":"1","abstract":[{"lang":"eng","text":"Similarity is one of the most important abstract concepts in human perception of the world. In computer vision, numerous applications deal with comparing objects observed in a scene with some a priori known patterns. Often, it happens that while two objects are not similar, they have large similar parts, that is, they are partially similar. Here, we present a novel approach to quantify partial similarity using the notion of Pareto optimality. We exemplify our approach on the problems of recognizing non-rigid geometric objects, images, and analyzing text sequences."}],"author":[{"last_name":"Bronstein","orcid":"0000-0001-9699-8730","first_name":"Alexander","full_name":"Bronstein, Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6"},{"first_name":"Michael M.","full_name":"Bronstein, Michael M.","last_name":"Bronstein"},{"first_name":"Alfred M.","full_name":"Bruckstein, Alfred M.","last_name":"Bruckstein"},{"last_name":"Kimmel","full_name":"Kimmel, Ron","first_name":"Ron"}],"publication":"International Journal of Computer Vision","date_published":"2009-08-01T00:00:00Z","publisher":"Springer Nature","day":"01","date_updated":"2024-10-22T07:55:59Z","date_created":"2024-10-15T11:20:54Z","intvolume":"        84","status":"public","page":"163-183","year":"2009","doi":"10.1007/s11263-008-0147-3","article_processing_charge":"No","article_type":"original","title":"Partial similarity of objects, or how to compare a centaur to a horse","scopus_import":"1","month":"08","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"title":"Topology-invariant similarity of nonrigid shapes","article_type":"original","article_processing_charge":"No","doi":"10.1007/s11263-008-0172-2","page":"281-301","year":"2009","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"03","scopus_import":"1","publisher":"Springer Nature","status":"public","intvolume":"        81","date_created":"2024-10-15T11:20:54Z","date_updated":"2024-10-22T07:27:15Z","day":"01","quality_controlled":"1","citation":{"apa":"Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2009). Topology-invariant similarity of nonrigid shapes. <i>International Journal of Computer Vision</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11263-008-0172-2\">https://doi.org/10.1007/s11263-008-0172-2</a>","ama":"Bronstein AM, Bronstein MM, Kimmel R. Topology-invariant similarity of nonrigid shapes. <i>International Journal of Computer Vision</i>. 2009;81(3):281-301. doi:<a href=\"https://doi.org/10.1007/s11263-008-0172-2\">10.1007/s11263-008-0172-2</a>","short":"A.M. Bronstein, M.M. Bronstein, R. Kimmel, International Journal of Computer Vision 81 (2009) 281–301.","chicago":"Bronstein, Alex M., Michael M. Bronstein, and Ron Kimmel. “Topology-Invariant Similarity of Nonrigid Shapes.” <i>International Journal of Computer Vision</i>. Springer Nature, 2009. <a href=\"https://doi.org/10.1007/s11263-008-0172-2\">https://doi.org/10.1007/s11263-008-0172-2</a>.","ista":"Bronstein AM, Bronstein MM, Kimmel R. 2009. Topology-invariant similarity of nonrigid shapes. International Journal of Computer Vision. 81(3), 281–301.","mla":"Bronstein, Alex M., et al. “Topology-Invariant Similarity of Nonrigid Shapes.” <i>International Journal of Computer Vision</i>, vol. 81, no. 3, Springer Nature, 2009, pp. 281–301, doi:<a href=\"https://doi.org/10.1007/s11263-008-0172-2\">10.1007/s11263-008-0172-2</a>.","ieee":"A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “Topology-invariant similarity of nonrigid shapes,” <i>International Journal of Computer Vision</i>, vol. 81, no. 3. Springer Nature, pp. 281–301, 2009."},"publication_status":"published","oa_version":"None","date_published":"2009-03-01T00:00:00Z","author":[{"last_name":"Bronstein","orcid":"0000-0001-9699-8730","first_name":"Alexander","full_name":"Bronstein, Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6"},{"last_name":"Bronstein","first_name":"Michael M.","full_name":"Bronstein, Michael M."},{"last_name":"Kimmel","first_name":"Ron","full_name":"Kimmel, Ron"}],"publication":"International Journal of Computer Vision","abstract":[{"text":"This paper explores the problem of similarity criteria between nonrigid shapes. Broadly speaking, such criteria are divided into intrinsic and extrinsic, the first referring to the metric structure of the object and the latter to how it is laid out in the Euclidean space. Both criteria have their advantages and disadvantages: extrinsic similarity is sensitive to nonrigid deformations, while intrinsic similarity is sensitive to topological noise. In this paper, we approach the problem from the perspective of metric geometry. We show that by unifying the extrinsic and intrinsic similarity criteria, it is possible to obtain a stronger topology-invariant similarity, suitable for comparing deformed shapes with different topology. We construct this new joint criterion as a tradeoff between the extrinsic and intrinsic similarity and use it as a set-valued distance. Numerical results demonstrate the efficiency of our approach in cases where using either extrinsic or intrinsic criteria alone would fail.","lang":"eng"}],"_id":"18357","type":"journal_article","language":[{"iso":"eng"}],"issue":"3","publication_identifier":{"issn":["0920-5691"],"eissn":["1573-1405"]},"OA_type":"closed access","volume":81,"extern":"1"},{"publisher":"IEEE","_id":"18391","OA_type":"closed access","extern":"1","language":[{"iso":"eng"}],"type":"conference","status":"public","day":"15","conference":{"name":"ICCV: International Conference on Computer Vision","start_date":"2009-09-27","location":"Kyoto, Japan","end_date":"2009-10-04"},"date_updated":"2024-11-19T13:00:24Z","date_created":"2024-10-15T11:20:54Z","article_processing_charge":"No","publication_status":"published","citation":{"apa":"Rubinstein, O., Honen, Y., Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2009). 3D-color video camera. In <i>12th International Conference on Computer Vision Workshops</i>. Kyoto, Japan: IEEE. <a href=\"https://doi.org/10.1109/iccvw.2009.5457433\">https://doi.org/10.1109/iccvw.2009.5457433</a>","short":"O. Rubinstein, Y. Honen, A.M. Bronstein, M.M. Bronstein, R. Kimmel, in:, 12th International Conference on Computer Vision Workshops, IEEE, 2009.","ama":"Rubinstein O, Honen Y, Bronstein AM, Bronstein MM, Kimmel R. 3D-color video camera. In: <i>12th International Conference on Computer Vision Workshops</i>. IEEE; 2009. doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457433\">10.1109/iccvw.2009.5457433</a>","chicago":"Rubinstein, O., Y. Honen, Alex M. Bronstein, M. M. Bronstein, and R. Kimmel. “3D-Color Video Camera.” In <i>12th International Conference on Computer Vision Workshops</i>. IEEE, 2009. <a href=\"https://doi.org/10.1109/iccvw.2009.5457433\">https://doi.org/10.1109/iccvw.2009.5457433</a>.","ista":"Rubinstein O, Honen Y, Bronstein AM, Bronstein MM, Kimmel R. 2009. 3D-color video camera. 12th International Conference on Computer Vision Workshops. ICCV: International Conference on Computer Vision.","ieee":"O. Rubinstein, Y. Honen, A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “3D-color video camera,” in <i>12th International Conference on Computer Vision Workshops</i>, Kyoto, Japan, 2009.","mla":"Rubinstein, O., et al. “3D-Color Video Camera.” <i>12th International Conference on Computer Vision Workshops</i>, IEEE, 2009, doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457433\">10.1109/iccvw.2009.5457433</a>."},"title":"3D-color video camera","quality_controlled":"1","oa_version":"None","year":"2009","doi":"10.1109/iccvw.2009.5457433","publication":"12th International Conference on Computer Vision Workshops","month":"10","author":[{"last_name":"Rubinstein","full_name":"Rubinstein, O.","first_name":"O."},{"last_name":"Honen","first_name":"Y.","full_name":"Honen, Y."},{"full_name":"Bronstein, Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","first_name":"Alexander","orcid":"0000-0001-9699-8730","last_name":"Bronstein"},{"last_name":"Bronstein","first_name":"M. M.","full_name":"Bronstein, M. M."},{"last_name":"Kimmel","first_name":"R.","full_name":"Kimmel, R."}],"date_published":"2009-10-15T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"We introduce a design of a coded light-based 3D color video camera optimized for build up cost as well as accuracy in depth reconstruction and acquisition speed. The components of the system include a monochromatic camera and an off-the-shelf LED projector synchronized by a miniature circuit. The projected patterns are captured and processed at a rate of 200 fps and allow for real-time reconstruction of both depth and color at video rates. The reconstruction and display are performed at around 30 depth profiles and color texture per second using a graphics processing unit (GPU).","lang":"eng"}],"scopus_import":"1"},{"author":[{"full_name":"Ovsjanikov, Maks","first_name":"Maks","last_name":"Ovsjanikov"},{"orcid":"0000-0001-9699-8730","last_name":"Bronstein","full_name":"Bronstein, Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","first_name":"Alexander"},{"first_name":"Michael M.","full_name":"Bronstein, Michael M.","last_name":"Bronstein"},{"first_name":"Leonidas J.","full_name":"Guibas, Leonidas J.","last_name":"Guibas"}],"month":"11","publication":"12th International Conference on Computer Vision Workshops","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2009-11-01T00:00:00Z","scopus_import":"1","abstract":[{"lang":"eng","text":"Feature-based methods have recently gained popularity in computer vision and pattern recognition communities, in applications such as object recognition and image retrieval. In this paper, we explore analogous approaches in the 3D world applied to the problem of non-rigid shape search and retrieval in large databases."}],"publication_status":"published","citation":{"ieee":"M. Ovsjanikov, A. M. Bronstein, M. M. Bronstein, and L. J. Guibas, “Shape Google: A computer vision approach to isometry invariant shape retrieval,” in <i>12th International Conference on Computer Vision Workshops</i>, Kyoto, Japan, 2009.","mla":"Ovsjanikov, Maks, et al. “Shape Google: A Computer Vision Approach to Isometry Invariant Shape Retrieval.” <i>12th International Conference on Computer Vision Workshops</i>, IEEE, 2009, doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457682\">10.1109/iccvw.2009.5457682</a>.","ista":"Ovsjanikov M, Bronstein AM, Bronstein MM, Guibas LJ. 2009. Shape Google: A computer vision approach to isometry invariant shape retrieval. 12th International Conference on Computer Vision Workshops. ICCV: International Conference on Computer Vision.","chicago":"Ovsjanikov, Maks, Alex M. Bronstein, Michael M. Bronstein, and Leonidas J. Guibas. “Shape Google: A Computer Vision Approach to Isometry Invariant Shape Retrieval.” In <i>12th International Conference on Computer Vision Workshops</i>. IEEE, 2009. <a href=\"https://doi.org/10.1109/iccvw.2009.5457682\">https://doi.org/10.1109/iccvw.2009.5457682</a>.","short":"M. Ovsjanikov, A.M. Bronstein, M.M. Bronstein, L.J. Guibas, in:, 12th International Conference on Computer Vision Workshops, IEEE, 2009.","ama":"Ovsjanikov M, Bronstein AM, Bronstein MM, Guibas LJ. Shape Google: A computer vision approach to isometry invariant shape retrieval. In: <i>12th International Conference on Computer Vision Workshops</i>. IEEE; 2009. doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457682\">10.1109/iccvw.2009.5457682</a>","apa":"Ovsjanikov, M., Bronstein, A. M., Bronstein, M. M., &#38; Guibas, L. J. (2009). Shape Google: A computer vision approach to isometry invariant shape retrieval. In <i>12th International Conference on Computer Vision Workshops</i>. Kyoto, Japan: IEEE. <a href=\"https://doi.org/10.1109/iccvw.2009.5457682\">https://doi.org/10.1109/iccvw.2009.5457682</a>"},"article_processing_charge":"No","title":"Shape Google: A computer vision approach to isometry invariant shape retrieval","quality_controlled":"1","oa_version":"None","year":"2009","doi":"10.1109/iccvw.2009.5457682","status":"public","day":"01","date_updated":"2024-11-18T10:38:45Z","date_created":"2024-10-15T11:20:54Z","conference":{"start_date":"2009-10-27","name":"ICCV: International Conference on Computer Vision","location":"Kyoto, Japan","end_date":"2009-10-04"},"publisher":"IEEE","_id":"18392","publication_identifier":{"isbn":["9781424444427"]},"extern":"1","type":"conference","language":[{"iso":"eng"}]},{"date_created":"2024-10-15T11:20:54Z","date_updated":"2024-11-18T10:29:12Z","conference":{"name":"ICCV: International Conference on Computer Vision","start_date":"2009-09-27","location":"Kyoto, Japan","end_date":"2009-10-04"},"day":"01","status":"public","type":"conference","language":[{"iso":"eng"}],"publication_identifier":{"isbn":["9781424444427"]},"extern":"1","publisher":"IEEE","_id":"18393","scopus_import":"1","abstract":[{"lang":"eng","text":"Shape-from-X is a generic type of inverse problems in computer vision, in which a shape is reconstructed from some measurements. A specially challenging setting of this problem is the case in which the reconstructed shapes are non-rigid. In this paper, we propose a framework for intrinsic regularization of such problems. The assumption is that we have the geometric structure of a shape which is intrinsically (up to bending) similar to the one we would like to reconstruct. For that goal, we formulate a variation with respect to vertex coordinates of a triangulated mesh approximating the continuous shape. The numerical core of the proposed method is based on differentiating the fast marching update step for geodesic distance computation."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2009-11-01T00:00:00Z","author":[{"full_name":"Devir, Yohai S.","first_name":"Yohai S.","last_name":"Devir"},{"last_name":"Rosman","first_name":"Guy","full_name":"Rosman, Guy"},{"full_name":"Bronstein, Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","first_name":"Alexander","orcid":"0000-0001-9699-8730","last_name":"Bronstein"},{"last_name":"Bronstein","first_name":"Michael M.","full_name":"Bronstein, Michael M."},{"last_name":"Kimmel","first_name":"Ron","full_name":"Kimmel, Ron"}],"publication":"12th International Conference on Computer Vision Workshops","month":"11","doi":"10.1109/iccvw.2009.5457688","oa_version":"None","year":"2009","quality_controlled":"1","title":"On reconstruction of non-rigid shapes with intrinsic regularization","citation":{"ieee":"Y. S. Devir, G. Rosman, A. M. Bronstein, M. M. Bronstein, and R. Kimmel, “On reconstruction of non-rigid shapes with intrinsic regularization,” in <i>12th International Conference on Computer Vision Workshops</i>, Kyoto, Japan, 2009.","mla":"Devir, Yohai S., et al. “On Reconstruction of Non-Rigid Shapes with Intrinsic Regularization.” <i>12th International Conference on Computer Vision Workshops</i>, IEEE, 2009, doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457688\">10.1109/iccvw.2009.5457688</a>.","ista":"Devir YS, Rosman G, Bronstein AM, Bronstein MM, Kimmel R. 2009. On reconstruction of non-rigid shapes with intrinsic regularization. 12th International Conference on Computer Vision Workshops. ICCV: International Conference on Computer Vision.","chicago":"Devir, Yohai S., Guy Rosman, Alex M. Bronstein, Michael M. Bronstein, and Ron Kimmel. “On Reconstruction of Non-Rigid Shapes with Intrinsic Regularization.” In <i>12th International Conference on Computer Vision Workshops</i>. IEEE, 2009. <a href=\"https://doi.org/10.1109/iccvw.2009.5457688\">https://doi.org/10.1109/iccvw.2009.5457688</a>.","short":"Y.S. Devir, G. Rosman, A.M. Bronstein, M.M. Bronstein, R. Kimmel, in:, 12th International Conference on Computer Vision Workshops, IEEE, 2009.","ama":"Devir YS, Rosman G, Bronstein AM, Bronstein MM, Kimmel R. On reconstruction of non-rigid shapes with intrinsic regularization. In: <i>12th International Conference on Computer Vision Workshops</i>. IEEE; 2009. doi:<a href=\"https://doi.org/10.1109/iccvw.2009.5457688\">10.1109/iccvw.2009.5457688</a>","apa":"Devir, Y. S., Rosman, G., Bronstein, A. M., Bronstein, M. M., &#38; Kimmel, R. (2009). On reconstruction of non-rigid shapes with intrinsic regularization. In <i>12th International Conference on Computer Vision Workshops</i>. Kyoto, Japan: IEEE. <a href=\"https://doi.org/10.1109/iccvw.2009.5457688\">https://doi.org/10.1109/iccvw.2009.5457688</a>"},"publication_status":"published","article_processing_charge":"No"},{"article_processing_charge":"No","publication_status":"published","citation":{"mla":"Bronstein, Alex M., et al. “Partial Similarity of Shapes Using a Statistical Significance Measure.” <i>IPSJ Transactions on Computer Vision and Applications</i>, vol. 1, Information Processing Society of Japan, 2009, pp. 105–14, doi:<a href=\"https://doi.org/10.2197/ipsjtcva.1.105\">10.2197/ipsjtcva.1.105</a>.","ieee":"A. M. Bronstein, M. M. Bronstein, Y. Carmon, and R. Kimmel, “Partial similarity of shapes using a statistical significance measure,” <i>IPSJ Transactions on Computer Vision and Applications</i>, vol. 1. Information Processing Society of Japan, pp. 105–114, 2009.","ista":"Bronstein AM, Bronstein MM, Carmon Y, Kimmel R. 2009. Partial similarity of shapes using a statistical significance measure. IPSJ Transactions on Computer Vision and Applications. 1, 105–114.","chicago":"Bronstein, Alex M., Michael M. Bronstein, Yair Carmon, and Ron Kimmel. “Partial Similarity of Shapes Using a Statistical Significance Measure.” <i>IPSJ Transactions on Computer Vision and Applications</i>. Information Processing Society of Japan, 2009. <a href=\"https://doi.org/10.2197/ipsjtcva.1.105\">https://doi.org/10.2197/ipsjtcva.1.105</a>.","short":"A.M. Bronstein, M.M. Bronstein, Y. Carmon, R. Kimmel, IPSJ Transactions on Computer Vision and Applications 1 (2009) 105–114.","ama":"Bronstein AM, Bronstein MM, Carmon Y, Kimmel R. Partial similarity of shapes using a statistical significance measure. <i>IPSJ Transactions on Computer Vision and Applications</i>. 2009;1:105-114. doi:<a href=\"https://doi.org/10.2197/ipsjtcva.1.105\">10.2197/ipsjtcva.1.105</a>","apa":"Bronstein, A. M., Bronstein, M. M., Carmon, Y., &#38; Kimmel, R. (2009). Partial similarity of shapes using a statistical significance measure. <i>IPSJ Transactions on Computer Vision and Applications</i>. Information Processing Society of Japan. <a href=\"https://doi.org/10.2197/ipsjtcva.1.105\">https://doi.org/10.2197/ipsjtcva.1.105</a>"},"quality_controlled":"1","title":"Partial similarity of shapes using a statistical significance measure","year":"2009","oa_version":"Published Version","page":"105-114","doi":"10.2197/ipsjtcva.1.105","month":"03","publication":"IPSJ Transactions on Computer Vision and Applications","author":[{"last_name":"Bronstein","orcid":"0000-0001-9699-8730","first_name":"Alexander","full_name":"Bronstein, Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6"},{"first_name":"Michael M.","full_name":"Bronstein, Michael M.","last_name":"Bronstein"},{"last_name":"Carmon","first_name":"Yair","full_name":"Carmon, Yair"},{"last_name":"Kimmel","full_name":"Kimmel, Ron","first_name":"Ron"}],"date_published":"2009-03-31T00:00:00Z","oa":1,"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Partial matching of geometric structures is important in computer vision, pattern recognition and shape analysis applications. The problem consists of matching similar parts of shapes that may be dissimilar as a whole. Recently, it was proposed to consider partial similarity as a multi-criterion optimization problem trying to simultaneously maximize the similarity and the significance of the matching parts. A major challenge in that framework is providing a quantitative measure of the significance of a part of an object. Here, we define the significance of a part of a shape by its discriminative power with respect do a given shape database — that is, the uniqueness of the part. We define a point-wise significance density using a statistical weighting approach similar to the term frequency-inverse document frequency (tf-idf) weighting employed in search engines. The significance measure of a given part is obtained by integrating over this density. Numerical experiments show that the proposed approach produces intuitive significant parts, and demonstrate an improvement in the performance of partial matching between shapes. "}],"scopus_import":"1","main_file_link":[{"url":"https://doi.org/10.2197/ipsjtcva.1.105","open_access":"1"}],"_id":"18438","publisher":"Information Processing Society of Japan","extern":"1","volume":1,"publication_identifier":{"eissn":["1882-6695"]},"type":"journal_article","language":[{"iso":"eng"}],"intvolume":"         1","status":"public","day":"31","date_created":"2024-10-15T11:20:55Z","date_updated":"2024-12-18T16:01:54Z"},{"title":"Observing the first stars and black holes","article_processing_charge":"No","doi":"10.1007/978-1-4020-9457-6_15","external_id":{"arxiv":["0809.3926"]},"year":"2009","page":"385-418","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","scopus_import":"1","publisher":"Springer Nature","status":"public","date_created":"2025-01-03T12:09:18Z","date_updated":"2025-01-03T12:14:49Z","day":"01","place":"Dordrecht","quality_controlled":"1","publication_status":"published","citation":{"ieee":"Z. Haiman, “Observing the first stars and black holes,” in <i>Astrophysics and Space Science Proceedings</i>, 2009, pp. 385–418.","mla":"Haiman, Zoltán. “Observing the First Stars and Black Holes.” <i>Astrophysics and Space Science Proceedings</i>, Springer Nature, 2009, pp. 385–418, doi:<a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">10.1007/978-1-4020-9457-6_15</a>.","ista":"Haiman Z. 2009. Observing the first stars and black holes. Astrophysics and Space Science Proceedings. , Astrophysics and Space Science Proceedings, , 385–418.","ama":"Haiman Z. Observing the first stars and black holes. In: <i>Astrophysics and Space Science Proceedings</i>. Dordrecht: Springer Nature; 2009:385-418. doi:<a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">10.1007/978-1-4020-9457-6_15</a>","short":"Z. Haiman, in:, Astrophysics and Space Science Proceedings, Springer Nature, Dordrecht, 2009, pp. 385–418.","chicago":"Haiman, Zoltán. “Observing the First Stars and Black Holes.” In <i>Astrophysics and Space Science Proceedings</i>, 385–418. Dordrecht: Springer Nature, 2009. <a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">https://doi.org/10.1007/978-1-4020-9457-6_15</a>.","apa":"Haiman, Z. (2009). Observing the first stars and black holes. In <i>Astrophysics and Space Science Proceedings</i> (pp. 385–418). Dordrecht: Springer Nature. <a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">https://doi.org/10.1007/978-1-4020-9457-6_15</a>"},"oa_version":"Preprint","date_published":"2009-01-01T00:00:00Z","oa":1,"alternative_title":["Astrophysics and Space Science Proceedings"],"publication":"Astrophysics and Space Science Proceedings","author":[{"full_name":"Haiman, Zoltán","id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36","first_name":"Zoltán","orcid":"0000-0003-3633-5403","last_name":"Haiman"}],"OA_place":"repository","abstract":[{"text":"The high sensitivity of JWST will open a new window on the end of the cosmological dark ages. Small stellar clusters, with a stellar mass of several × 106 M⊙, and low-mass black holes (BHs), with a mass of several $× 105 M⊙ should be directly detectable out to redshift z = 10, and individual supernovae (SNe) and gamma ray burst GRB afterglows are bright enough to be visible beyond this redshift. Dense primordial gas, in the process of collapsing from large scales to form protogalaxies, may also be possible to image through diffuse recombination line emission, possibly even before stars or BHs are formed. In this article, I discuss the key physical processes that are expected to have determined the sizes of the first star–clusters and black holes, and the prospect of studying these objects by direct detections with JWST and with other instruments. The direct light emitted by the very first stellar clusters and intermediate-mass black holes at z > 10 will likely fall below JWST’s detection threshold. However, JWST could reveal a decline at the faint-end of the high-redshift luminosity function, and thereby shed light on radiative and other feedback effects that operate at these early epochs. JWST will also have the sensitivity to detect individual SNe from beyond z = 10. In a dedicated survey lasting for several weeks, thousands of SNe could be detected at z > 6, with a redshift distribution extending to the formation of the very first stars at z ≳ 15. Using these SNe as tracers may be the only method to map out the earliest stages of the cosmic star–formation history. Finally, we point out that studying the earliest objects at high redshift will also offer a new window on the primordial power spectrum, on ∼100 times smaller scales than probed by current large-scale structure data.","lang":"eng"}],"main_file_link":[{"url":"https://arxiv.org/abs/0809.3926","open_access":"1"}],"_id":"18726","type":"conference","language":[{"iso":"eng"}],"OA_type":"green","extern":"1","publication_identifier":{"isbn":["9781402094569"],"issn":["1570-6591"],"eissn":["1570-6605"],"eisbn":["9781402094576"]},"arxiv":1},{"status":"public","date_updated":"2025-01-07T12:52:13Z","date_created":"2025-01-03T12:29:16Z","day":"11","publisher":"Springer Nature","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"02","scopus_import":"1","title":"Observing the First Stars and Black Holes","article_processing_charge":"No","doi":"10.1007/978-1-4020-9457-6_15","external_id":{"arxiv":["0809.3926"]},"page":"385-418","year":"2009","arxiv":1,"_id":"18735","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/0809.3926"}],"type":"book_chapter","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1570-6605"],"eisbn":["9781402094576"],"isbn":["9781402094569"],"issn":["1570-6591"]},"extern":"1","OA_type":"green","alternative_title":["Astrophysics and Space Science Proceedings"],"oa":1,"date_published":"2009-02-11T00:00:00Z","author":[{"first_name":"Zoltán","full_name":"Haiman, Zoltán","id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36","last_name":"Haiman","orcid":"0000-0003-3633-5403"}],"publication":"Astrophysics in the Next Decade","editor":[{"first_name":"Harley A.","full_name":"Thronson, Harley A.","last_name":"Thronson"},{"last_name":"Stiavelli","first_name":"Massimo","full_name":"Stiavelli, Massimo"},{"last_name":"Tielens","full_name":"Tielens, Alexander","first_name":"Alexander"}],"abstract":[{"lang":"eng","text":"The high sensitivity of JWST will open a new window on the end of the cosmological dark ages. Small stellar clusters, with a stellar mass of several × 106 M⊙, and low-mass black holes (BHs), with a mass of several $× 105 M⊙ should be directly detectable out to redshift z = 10, and individual supernovae (SNe) and gamma ray burst GRB afterglows are bright enough to be visible beyond this redshift. Dense primordial gas, in the process of collapsing from large scales to form protogalaxies, may also be possible to image through diffuse recombination line emission, possibly even before stars or BHs are formed. In this article, I discuss the key physical processes that are expected to have determined the sizes of the first star–clusters and black holes, and the prospect of studying these objects by direct detections with JWST and with other instruments. The direct light emitted by the very first stellar clusters and intermediate-mass black holes at z > 10 will likely fall below JWST’s detection threshold. However, JWST could reveal a decline at the faint-end of the high-redshift luminosity function, and thereby shed light on radiative and other feedback effects that operate at these early epochs. JWST will also have the sensitivity to detect individual SNe from beyond z = 10. In a dedicated survey lasting for several weeks, thousands of SNe could be detected at z > 6, with a redshift distribution extending to the formation of the very first stars at z ≳ 15. Using these SNe as tracers may be the only method to map out the earliest stages of the cosmic star–formation history. Finally, we point out that studying the earliest objects at high redshift will also offer a new window on the primordial power spectrum, on ∼100 times smaller scales than probed by current large-scale structure data."}],"OA_place":"repository","quality_controlled":"1","publication_status":"published","citation":{"ama":"Haiman Z. Observing the First Stars and Black Holes. In: Thronson HA, Stiavelli M, Tielens A, eds. <i>Astrophysics in the Next Decade</i>. Springer Nature; 2009:385-418. doi:<a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">10.1007/978-1-4020-9457-6_15</a>","short":"Z. Haiman, in:, H.A. Thronson, M. Stiavelli, A. Tielens (Eds.), Astrophysics in the Next Decade, Springer Nature, 2009, pp. 385–418.","chicago":"Haiman, Zoltán. “Observing the First Stars and Black Holes.” In <i>Astrophysics in the Next Decade</i>, edited by Harley A. Thronson, Massimo Stiavelli, and Alexander Tielens, 385–418. Springer Nature, 2009. <a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">https://doi.org/10.1007/978-1-4020-9457-6_15</a>.","apa":"Haiman, Z. (2009). Observing the First Stars and Black Holes. In H. A. Thronson, M. Stiavelli, &#38; A. Tielens (Eds.), <i>Astrophysics in the Next Decade</i> (pp. 385–418). Springer Nature. <a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">https://doi.org/10.1007/978-1-4020-9457-6_15</a>","ieee":"Z. Haiman, “Observing the First Stars and Black Holes,” in <i>Astrophysics in the Next Decade</i>, H. A. Thronson, M. Stiavelli, and A. Tielens, Eds. Springer Nature, 2009, pp. 385–418.","mla":"Haiman, Zoltán. “Observing the First Stars and Black Holes.” <i>Astrophysics in the Next Decade</i>, edited by Harley A. Thronson et al., Springer Nature, 2009, pp. 385–418, doi:<a href=\"https://doi.org/10.1007/978-1-4020-9457-6_15\">10.1007/978-1-4020-9457-6_15</a>.","ista":"Haiman Z. 2009.Observing the First Stars and Black Holes. In: Astrophysics in the Next Decade. Astrophysics and Space Science Proceedings, , 385–418."},"oa_version":"Preprint"},{"type":"journal_article","issue":"4","extern":1,"volume":181,"_id":"2067","publisher":"Genetics Society of America","date_created":"2018-12-11T11:55:31Z","date_updated":"2021-01-12T06:55:06Z","day":"01","status":"public","intvolume":"       181","doi":"10.1534/genetics.108.098004","page":"1699 - 1701","year":"2009","quality_controlled":0,"title":"Recombination rates may affect the ratio of X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster","acknowledgement":"This work was funded by a Portuguese Foundation for Science and Technology scholarship to B.V., and B.C. was supported by the Royal Society","citation":{"mla":"Vicoso, Beatriz, and Brian Charlesworth. “Recombination Rates May Affect the Ratio of X to Autosomal Noncoding Polymorphism in African Populations of Drosophila Melanogaster.” <i>Genetics</i>, vol. 181, no. 4, Genetics Society of America, 2009, pp. 1699–701, doi:<a href=\"https://doi.org/10.1534/genetics.108.098004\">10.1534/genetics.108.098004</a>.","ieee":"B. Vicoso and B. Charlesworth, “Recombination rates may affect the ratio of X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster,” <i>Genetics</i>, vol. 181, no. 4. Genetics Society of America, pp. 1699–1701, 2009.","ista":"Vicoso B, Charlesworth B. 2009. Recombination rates may affect the ratio of X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster. Genetics. 181(4), 1699–1701.","ama":"Vicoso B, Charlesworth B. Recombination rates may affect the ratio of X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster. <i>Genetics</i>. 2009;181(4):1699-1701. doi:<a href=\"https://doi.org/10.1534/genetics.108.098004\">10.1534/genetics.108.098004</a>","short":"B. Vicoso, B. Charlesworth, Genetics 181 (2009) 1699–1701.","chicago":"Vicoso, Beatriz, and Brian Charlesworth. “Recombination Rates May Affect the Ratio of X to Autosomal Noncoding Polymorphism in African Populations of Drosophila Melanogaster.” <i>Genetics</i>. Genetics Society of America, 2009. <a href=\"https://doi.org/10.1534/genetics.108.098004\">https://doi.org/10.1534/genetics.108.098004</a>.","apa":"Vicoso, B., &#38; Charlesworth, B. (2009). Recombination rates may affect the ratio of X to autosomal noncoding polymorphism in African populations of Drosophila melanogaster. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.108.098004\">https://doi.org/10.1534/genetics.108.098004</a>"},"publication_status":"published","publist_id":"4971","date_published":"2009-04-01T00:00:00Z","author":[{"last_name":"Vicoso","orcid":"0000-0002-4579-8306","first_name":"Beatriz","full_name":"Beatriz Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Charlesworth, Brian","first_name":"Brian","last_name":"Charlesworth"}],"publication":"Genetics","month":"04"},{"citation":{"short":"B. Vicoso, B. Charlesworth, Journal of Molecular Evolution 68 (2009) 576–583.","ama":"Vicoso B, Charlesworth B. The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation? <i>Journal of Molecular Evolution</i>. 2009;68(5):576-583. doi:<a href=\"https://doi.org/10.1007/s00239-009-9235-4\">10.1007/s00239-009-9235-4</a>","chicago":"Vicoso, Beatriz, and Brian Charlesworth. “The Deficit of Male-Biased Genes on the D. Melanogaster X Chromosome Is Expression-Dependent: A Consequence of Dosage Compensation?” <i>Journal of Molecular Evolution</i>. Springer, 2009. <a href=\"https://doi.org/10.1007/s00239-009-9235-4\">https://doi.org/10.1007/s00239-009-9235-4</a>.","apa":"Vicoso, B., &#38; Charlesworth, B. (2009). The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation? <i>Journal of Molecular Evolution</i>. Springer. <a href=\"https://doi.org/10.1007/s00239-009-9235-4\">https://doi.org/10.1007/s00239-009-9235-4</a>","ieee":"B. Vicoso and B. Charlesworth, “The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation?,” <i>Journal of Molecular Evolution</i>, vol. 68, no. 5. Springer, pp. 576–583, 2009.","mla":"Vicoso, Beatriz, and Brian Charlesworth. “The Deficit of Male-Biased Genes on the D. Melanogaster X Chromosome Is Expression-Dependent: A Consequence of Dosage Compensation?” <i>Journal of Molecular Evolution</i>, vol. 68, no. 5, Springer, 2009, pp. 576–83, doi:<a href=\"https://doi.org/10.1007/s00239-009-9235-4\">10.1007/s00239-009-9235-4</a>.","ista":"Vicoso B, Charlesworth B. 2009. The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation? Journal of Molecular Evolution. 68(5), 576–583."},"publist_id":"4970","publication_status":"published","acknowledgement":"This work was funded by a Portuguese Foundation for Science and Technology scholarship to B.V., and B.C. was supported by the Royal Society","title":"The deficit of male-biased genes on the D. melanogaster X chromosome is expression-dependent: A consequence of dosage compensation?","quality_controlled":0,"page":"576 - 583","year":"2009","doi":"10.1007/s00239-009-9235-4","author":[{"full_name":"Beatriz Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","first_name":"Beatriz","orcid":"0000-0002-4579-8306","last_name":"Vicoso"},{"full_name":"Charlesworth, Brian","first_name":"Brian","last_name":"Charlesworth"}],"publication":"Journal of Molecular Evolution","month":"05","date_published":"2009-05-01T00:00:00Z","abstract":[{"lang":"eng","text":"In Drosophila, there is a consistent deficit of male-biased genes on the X chromosome. It has been suggested that male-biased genes may evolve from initially unbiased genes as a result of increased expression levels in males. If transcription rates are limited, a large increase in expression in the testis may be harder to achieve for single-copy X-linked genes than for autosomal genes, because they are already hypertranscribed due to dosage compensation. This hypothesis predicts that the larger the increase in expression required to make a male-biased gene, the lower the chance of this being achievable if it is located on the X chromosome. Consequently, highly expressed male-biased genes should be located on the X chromosome less often than lowly expressed male-biased genes. This pattern is observed in our analysis of publicly available data, where microarray data or EST data are used to detect male-biased genes in D. melanogaster and to measure their expression levels. This is consistent with the idea that limitations in transcription rates may prevent male-biased genes from accumulating on the X chromosome."}],"_id":"2068","publisher":"Springer","issue":"5","extern":1,"volume":68,"type":"journal_article","intvolume":"        68","status":"public","day":"01","date_created":"2018-12-11T11:55:31Z","date_updated":"2021-01-12T06:55:06Z"},{"publisher":"Wiley-Blackwell","_id":"2069","type":"journal_article","issue":"9","volume":63,"extern":1,"status":"public","intvolume":"        63","date_updated":"2021-01-12T06:55:06Z","date_created":"2018-12-11T11:55:32Z","day":"01","acknowledgement":"This work was funded by a Portuguese Foundation for Science and Technology scholarship to BV, and BC was supported by the Royal Society","title":"Effective population size and the faster-X effect: An extended model","quality_controlled":0,"publication_status":"published","publist_id":"4968","citation":{"ista":"Vicoso B, Charlesworth B. 2009. Effective population size and the faster-X effect: An extended model. Evolution. 63(9), 2413–2426.","ieee":"B. Vicoso and B. Charlesworth, “Effective population size and the faster-X effect: An extended model,” <i>Evolution</i>, vol. 63, no. 9. Wiley-Blackwell, pp. 2413–2426, 2009.","mla":"Vicoso, Beatriz, and Brian Charlesworth. “Effective Population Size and the Faster-X Effect: An Extended Model.” <i>Evolution</i>, vol. 63, no. 9, Wiley-Blackwell, 2009, pp. 2413–26, doi:<a href=\"https://doi.org/10.1111/j.1558-5646.2009.00719.x\">10.1111/j.1558-5646.2009.00719.x</a>.","apa":"Vicoso, B., &#38; Charlesworth, B. (2009). Effective population size and the faster-X effect: An extended model. <i>Evolution</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/j.1558-5646.2009.00719.x\">https://doi.org/10.1111/j.1558-5646.2009.00719.x</a>","short":"B. Vicoso, B. Charlesworth, Evolution 63 (2009) 2413–2426.","ama":"Vicoso B, Charlesworth B. Effective population size and the faster-X effect: An extended model. <i>Evolution</i>. 2009;63(9):2413-2426. doi:<a href=\"https://doi.org/10.1111/j.1558-5646.2009.00719.x\">10.1111/j.1558-5646.2009.00719.x</a>","chicago":"Vicoso, Beatriz, and Brian Charlesworth. “Effective Population Size and the Faster-X Effect: An Extended Model.” <i>Evolution</i>. Wiley-Blackwell, 2009. <a href=\"https://doi.org/10.1111/j.1558-5646.2009.00719.x\">https://doi.org/10.1111/j.1558-5646.2009.00719.x</a>."},"doi":"10.1111/j.1558-5646.2009.00719.x","page":"2413 - 2426","year":"2009","date_published":"2009-09-01T00:00:00Z","author":[{"last_name":"Vicoso","orcid":"0000-0002-4579-8306","first_name":"Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","full_name":"Beatriz Vicoso"},{"full_name":"Charlesworth, Brian","first_name":"Brian","last_name":"Charlesworth"}],"month":"09","publication":"Evolution","abstract":[{"lang":"eng","text":"Current models of X-linked and autosomal evolutionary rates often assume that the effective population size of the X chromosome (NeX) is equal to three-quarters of the autosomal population size (NeA). However, polymorphism studies of Drosophila melanogaster and D. simulans suggest that there are often significant deviations from this value. We have computed fixation rates of beneficial and deleterious mutations at X-linked and autosomal sites when this occurs. We find that NeX/NeA is a crucial parameter for the rates of evolution of X-linked sites compared to autosomal sites. Faster-X evolution due to the fixation of beneficial mutations can occur under a much wider range of levels of dominance when NeX/N eA &gt; 3/4. We also examined various parameters that are known to influence the rates of evolution at X-linked and autosomal sites, such as different mutation rates in males and females and mutations that are sexually antagonistic, to determine which cases can lead to faster-X evolution. We show that, when the rate of nonsynonymous evolution is normalized by the rate of neutral evolution, a sex difference in mutation rate has no influence on the conditions for faster-X evolution."}]},{"_id":"2070","publisher":"Springer","type":"journal_article","volume":17,"extern":1,"issue":"5","status":"public","intvolume":"        17","date_updated":"2021-01-12T06:55:07Z","date_created":"2018-12-11T11:55:32Z","day":"01","quality_controlled":0,"acknowledgement":"This research is funded by NIH Grant GM076007 and a Sloan Research Fellowship and a David and Lucile Packard Fellowship to D.B.","title":"Progress and prospects toward our understanding of the evolution of dosage compensation","citation":{"ama":"Vicoso B, Bachtrog D. Progress and prospects toward our understanding of the evolution of dosage compensation. <i>Chromosome Research</i>. 2009;17(5):585-602. doi:<a href=\"https://doi.org/10.1007/s10577-009-9053-y\">10.1007/s10577-009-9053-y</a>","short":"B. Vicoso, D. Bachtrog, Chromosome Research 17 (2009) 585–602.","chicago":"Vicoso, Beatriz, and Doris Bachtrog. “Progress and Prospects toward Our Understanding of the Evolution of Dosage Compensation.” <i>Chromosome Research</i>. Springer, 2009. <a href=\"https://doi.org/10.1007/s10577-009-9053-y\">https://doi.org/10.1007/s10577-009-9053-y</a>.","apa":"Vicoso, B., &#38; Bachtrog, D. (2009). Progress and prospects toward our understanding of the evolution of dosage compensation. <i>Chromosome Research</i>. Springer. <a href=\"https://doi.org/10.1007/s10577-009-9053-y\">https://doi.org/10.1007/s10577-009-9053-y</a>","ieee":"B. Vicoso and D. Bachtrog, “Progress and prospects toward our understanding of the evolution of dosage compensation,” <i>Chromosome Research</i>, vol. 17, no. 5. Springer, pp. 585–602, 2009.","mla":"Vicoso, Beatriz, and Doris Bachtrog. “Progress and Prospects toward Our Understanding of the Evolution of Dosage Compensation.” <i>Chromosome Research</i>, vol. 17, no. 5, Springer, 2009, pp. 585–602, doi:<a href=\"https://doi.org/10.1007/s10577-009-9053-y\">10.1007/s10577-009-9053-y</a>.","ista":"Vicoso B, Bachtrog D. 2009. Progress and prospects toward our understanding of the evolution of dosage compensation. Chromosome Research. 17(5), 585–602."},"publication_status":"published","publist_id":"4969","doi":"10.1007/s10577-009-9053-y","year":"2009","page":"585 - 602","date_published":"2009-07-01T00:00:00Z","month":"07","publication":"Chromosome Research","author":[{"first_name":"Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","full_name":"Beatriz Vicoso","last_name":"Vicoso","orcid":"0000-0002-4579-8306"},{"last_name":"Bachtrog","first_name":"Doris","full_name":"Bachtrog, Doris"}],"abstract":[{"text":"In many eukaryotic organisms, gender is determined by a pair of heteromorphic sex chromosomes. Degeneration of the non-recombining Y chromosome is a general facet of sex chromosome evolution. Selective pressure to restore expression levels of X-linked genes relative to autosomes accompanies Y-chromosome degeneration, thus driving the evolution of dosage compensation mechanisms. This review focuses on evolutionary aspects of dosage compensation, in light of recent advances in comparative and functional genomics that have substantially increased our understanding of the molecular mechanisms of dosage compensation and how it evolved. We review processes involved in sex chromosome evolution, and discuss the dynamic interaction between Y degeneration and the acquisition of dosage compensation. We compare mechanisms of dosage compensation and the origin of dosage compensation genes between different taxa and comment on sex chromosomes that apparently lack compensation mechanisms. Finally, we discuss how dosage compensation systems can also influence the evolution of well-established sex chromosomes.","lang":"eng"}]},{"type":"conference","issue":"3","extern":1,"volume":28,"_id":"2094","publisher":"ACM","date_created":"2018-12-11T11:55:40Z","date_updated":"2019-04-26T07:22:08Z","conference":{"name":"ACM SIGGRAPH"},"day":"27","status":"public","intvolume":"        28","doi":"10.1145/1576246.1531395 ","year":"2009","quality_controlled":0,"title":"Capture and modeling of non-linear heterogeneous soft tissue","acknowledgement":"This research was supported by the NCCR Co-Me grant of the Swiss National Science Foundation. Moritz Bacher was partially supported by the Initiative in Innovative Computing (IIC) and the School of Engineering and Applied Sciences (SEAS) at Harvard. ","citation":{"apa":"Bickel, B., Bac̈Her, M., Otaduy, M., Matusik, W., Pfister, H., &#38; Groß, M. (2009). Capture and modeling of non-linear heterogeneous soft tissue (Vol. 28). Presented at the ACM SIGGRAPH, ACM. <a href=\"https://doi.org/10.1145/1576246.1531395 \">https://doi.org/10.1145/1576246.1531395 </a>","short":"B. Bickel, M. Bac̈Her, M. Otaduy, W. Matusik, H. Pfister, M. Groß, in:, ACM, 2009.","ama":"Bickel B, Bac̈Her M, Otaduy M, Matusik W, Pfister H, Groß M. Capture and modeling of non-linear heterogeneous soft tissue. In: Vol 28. ACM; 2009. doi:<a href=\"https://doi.org/10.1145/1576246.1531395 \">10.1145/1576246.1531395 </a>","chicago":"Bickel, Bernd, Moritz Bac̈Her, Miguel Otaduy, Wojciech Matusik, Hanspeter Pfister, and Markus Groß. “Capture and Modeling of Non-Linear Heterogeneous Soft Tissue,” Vol. 28. ACM, 2009. <a href=\"https://doi.org/10.1145/1576246.1531395 \">https://doi.org/10.1145/1576246.1531395 </a>.","ista":"Bickel B, Bac̈Her M, Otaduy M, Matusik W, Pfister H, Groß M. 2009. Capture and modeling of non-linear heterogeneous soft tissue. ACM SIGGRAPH vol. 28.","mla":"Bickel, Bernd, et al. <i>Capture and Modeling of Non-Linear Heterogeneous Soft Tissue</i>. Vol. 28, no. 3, ACM, 2009, doi:<a href=\"https://doi.org/10.1145/1576246.1531395 \">10.1145/1576246.1531395 </a>.","ieee":"B. Bickel, M. Bac̈Her, M. Otaduy, W. Matusik, H. Pfister, and M. Groß, “Capture and modeling of non-linear heterogeneous soft tissue,” presented at the ACM SIGGRAPH, 2009, vol. 28, no. 3."},"publist_id":"4940","publication_status":"published","abstract":[{"lang":"eng","text":"This paper introduces a data-driven representation and modeling technique for simulating non-linear heterogeneous soft tissue. It simplifies the construction of convincing deformable models by avoiding complex selection and tuning of physical material parameters, yet retaining the richness of non-linear heterogeneous behavior. We acquire a set of example deformations of a real object, and represent each of them as a spatially varying stress-strain relationship in a finite-element model. We then model the material by non-linear interpolation of these stress-strain relationships in strain-space. Our method relies on a simple-to-build capture system and an efficient run-time simulation algorithm based on incremental loading, making it suitable for interactive computer graphics applications. We present the results of our approach for several non-linear materials and biological soft tissue, with accurate agreement of our model to the measured data. "}],"date_published":"2009-07-27T00:00:00Z","author":[{"orcid":"0000-0001-6511-9385","last_name":"Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87","full_name":"Bernd Bickel","first_name":"Bernd"},{"last_name":"Bac̈Her","first_name":"Moritz","full_name":"Bac̈her, Moritz"},{"last_name":"Otaduy","first_name":"Miguel","full_name":"Otaduy, Miguel A"},{"full_name":"Matusik, Wojciech","first_name":"Wojciech","last_name":"Matusik"},{"last_name":"Pfister","first_name":"Hanspeter","full_name":"Pfister, Hanspeter"},{"first_name":"Markus","full_name":"Groß, Markus S","last_name":"Groß"}],"month":"07"},{"article_type":"original","title":"The structure of d(CACACG)·d(CGTGTG)","article_processing_charge":"No","doi":"10.1107/s1744309108037706","year":"2009","page":"8-13","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"01","has_accepted_license":"1","publisher":"International Union of Crystallography","status":"public","intvolume":"        65","date_updated":"2026-02-23T08:54:20Z","date_created":"2026-02-06T12:06:24Z","day":"01","quality_controlled":"1","citation":{"chicago":"Venkadesh, S., Pradeep K Mandal, and N. Gautham. “The Structure of d(CACACG)·d(CGTGTG).” <i>Acta Crystallographica Section F Structural Biology Communications</i>. International Union of Crystallography, 2009. <a href=\"https://doi.org/10.1107/s1744309108037706\">https://doi.org/10.1107/s1744309108037706</a>.","ama":"Venkadesh S, Mandal PK, Gautham N. The structure of d(CACACG)·d(CGTGTG). <i>Acta Crystallographica Section F Structural Biology Communications</i>. 2009;65(1):8-13. doi:<a href=\"https://doi.org/10.1107/s1744309108037706\">10.1107/s1744309108037706</a>","short":"S. Venkadesh, P.K. Mandal, N. Gautham, Acta Crystallographica Section F Structural Biology Communications 65 (2009) 8–13.","apa":"Venkadesh, S., Mandal, P. K., &#38; Gautham, N. (2009). The structure of d(CACACG)·d(CGTGTG). <i>Acta Crystallographica Section F Structural Biology Communications</i>. International Union of Crystallography. <a href=\"https://doi.org/10.1107/s1744309108037706\">https://doi.org/10.1107/s1744309108037706</a>","ieee":"S. Venkadesh, P. K. Mandal, and N. Gautham, “The structure of d(CACACG)·d(CGTGTG),” <i>Acta Crystallographica Section F Structural Biology Communications</i>, vol. 65, no. 1. International Union of Crystallography, pp. 8–13, 2009.","mla":"Venkadesh, S., et al. “The Structure of d(CACACG)·d(CGTGTG).” <i>Acta Crystallographica Section F Structural Biology Communications</i>, vol. 65, no. 1, International Union of Crystallography, 2009, pp. 8–13, doi:<a href=\"https://doi.org/10.1107/s1744309108037706\">10.1107/s1744309108037706</a>.","ista":"Venkadesh S, Mandal PK, Gautham N. 2009. The structure of d(CACACG)·d(CGTGTG). Acta Crystallographica Section F Structural Biology Communications. 65(1), 8–13."},"publication_status":"published","oa_version":"None","date_published":"2009-01-01T00:00:00Z","publication":"Acta Crystallographica Section F Structural Biology Communications","author":[{"last_name":"Venkadesh","full_name":"Venkadesh, S.","first_name":"S."},{"last_name":"Mandal","orcid":"0000-0001-5996-956X","first_name":"Pradeep K","full_name":"Mandal, Pradeep K","id":"6a3def15-d4b4-11ef-9fa9-a24c1f545ec3"},{"last_name":"Gautham","first_name":"N.","full_name":"Gautham, N."}],"abstract":[{"text":"The crystal structure of d(CACACG)·d(CGTGTG) was solved to a resolution of 2.05 Å in space group P21. The duplex assumes the left-handed Z-DNA structure. The presence of two A·T base pairs in the hexamer does not greatly affect the conformation. The most significant changes compared with the regular structure of Z-DNA are in the values of twist in the central portion of the helix. This variation, as well as others in the values of roll, inclination etc., follow the pattern observed previously in the structure of d(CGCACG)·d(CGTGCG).","lang":"eng"}],"_id":"21150","type":"journal_article","language":[{"iso":"eng"}],"extern":"1","OA_type":"closed access","volume":65,"publication_identifier":{"issn":["1744-3091"]},"issue":"1"},{"publication":"Journal of Functional Analysis","month":"10","author":[{"first_name":"Jan","full_name":"Jan Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","last_name":"Maas","orcid":"0000-0002-0845-1338"},{"last_name":"Van Neerven","full_name":"van Neerven, Jan M","first_name":"Jan"}],"date_published":"2009-10-15T00:00:00Z","oa":1,"abstract":[{"text":"Let (E, H, μ) be an abstract Wiener space and let DV : = V D, where D denotes the Malliavin derivative and V is a closed and densely defined operator from H into another Hilbert space under(H, {combining low line}). Given a bounded operator B on under(H, {combining low line}), coercive on the range over(R (V), -), we consider the operators A : = V* B V in H and under(A, {combining low line}) : = V V* B in under(H, {combining low line}), as well as the realisations of the operators L : = DV* B DV and under(L, {combining low line}) : = DV DV* B in Lp (E, μ) and Lp (E, μ ; under(H, {combining low line})) respectively, where 1 &lt; p &lt; ∞. Our main result asserts that the following four assertions are equivalent: (1)D (sqrt(L)) = D (DV) with {norm of matrix} sqrt(L) f {norm of matrix}p {minus tilde} {norm of matrix} DV f {norm of matrix}p for f ∈ D (sqrt(L));(2)under(L, {combining low line}) admits a bounded H∞-functional calculus on over(R (DV), -);(3)D (sqrt(A)) = D (V) with {norm of matrix} sqrt(A) h {norm of matrix} {minus tilde} {norm of matrix} V h {norm of matrix} for h ∈ D (sqrt(A));(4)under(A, {combining low line}) admits a bounded H∞-functional calculus on over(R (V), -). Moreover, if these conditions are satisfied, then D (L) = D (DV2) ∩ D (DA). The equivalence (1)-(4) is a non-symmetric generalisation of the classical Meyer inequalities of Malliavin calculus (where under(H, {combining low line}) = H, V = I, B = frac(1, 2) I). A one-sided version of (1)-(4), giving Lp-boundedness of the Riesz transform DV / sqrt(L) in terms of a square function estimate, is also obtained. As an application let -A generate an analytic C0-contraction semigroup on a Hilbert space H and let -L be the Lp-realisation of the generator of its second quantisation. Our results imply that two-sided bounds for the Riesz transform of L are equivalent with the Kato square root property for A. The boundedness of the Riesz transform is used to obtain an Lp-domain characterisation for the operator L.","lang":"eng"}],"publication_status":"published","citation":{"ista":"Maas J, Van Neerven J. 2009. Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces. Journal of Functional Analysis. 257(8), 2410–2475.","ieee":"J. Maas and J. Van Neerven, “Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces,” <i>Journal of Functional Analysis</i>, vol. 257, no. 8. Academic Press, pp. 2410–2475, 2009.","mla":"Maas, Jan, and Jan Van Neerven. “Boundedness of Riesz Transforms for Elliptic Operators on Abstract Wiener Spaces.” <i>Journal of Functional Analysis</i>, vol. 257, no. 8, Academic Press, 2009, pp. 2410–75, doi:<a href=\"https://doi.org/10.1016/j.jfa.2009.07.001\">10.1016/j.jfa.2009.07.001</a>.","apa":"Maas, J., &#38; Van Neerven, J. (2009). Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces. <i>Journal of Functional Analysis</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.jfa.2009.07.001\">https://doi.org/10.1016/j.jfa.2009.07.001</a>","chicago":"Maas, Jan, and Jan Van Neerven. “Boundedness of Riesz Transforms for Elliptic Operators on Abstract Wiener Spaces.” <i>Journal of Functional Analysis</i>. Academic Press, 2009. <a href=\"https://doi.org/10.1016/j.jfa.2009.07.001\">https://doi.org/10.1016/j.jfa.2009.07.001</a>.","short":"J. Maas, J. Van Neerven, Journal of Functional Analysis 257 (2009) 2410–2475.","ama":"Maas J, Van Neerven J. Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces. <i>Journal of Functional Analysis</i>. 2009;257(8):2410-2475. doi:<a href=\"https://doi.org/10.1016/j.jfa.2009.07.001\">10.1016/j.jfa.2009.07.001</a>"},"publist_id":"4913","title":"Boundedness of Riesz transforms for elliptic operators on abstract Wiener spaces","quality_controlled":0,"year":"2009","page":"2410 - 2475","doi":"10.1016/j.jfa.2009.07.001","intvolume":"       257","status":"public","day":"15","date_created":"2018-12-11T11:55:49Z","date_updated":"2021-01-12T06:55:25Z","_id":"2119","publisher":"Academic Press","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/0804.1432"}],"extern":1,"volume":257,"issue":"8","type":"journal_article"},{"author":[{"first_name":"Rostislav","full_name":"Vedrinskiǐ, Rostislav V","last_name":"Vedrinskiǐ"},{"full_name":"Kraǐzman, V. L","first_name":"V.","last_name":"Kraǐzman"},{"last_name":"Lemeshko","orcid":"0000-0002-6990-7802","first_name":"Mikhail","full_name":"Mikhail Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Nazarenko","full_name":"Nazarenko, Elena S","first_name":"Elena"},{"full_name":"Novakovich, Alexander A","first_name":"Alexander","last_name":"Novakovich"},{"last_name":"Reznichenko","full_name":"Reznichenko, Larisa A","first_name":"Larisa"},{"last_name":"Fokin","first_name":"Vladimir","full_name":"Fokin, Vladimir N"},{"first_name":"Victoria","full_name":"Shuvaeva, Victoria A","last_name":"Shuvaeva"}],"month":"07","date_published":"2009-07-12T00:00:00Z","abstract":[{"text":"The local atomic structure of PbTiO3, BaTiO3, and KNbO3 perovskite-type crystals and K x Na1 − x NbO3 solid solutions in different phases is investigated using the angular dependence of the pre-edge structure of the Ti and Nb K X-ray absorption spectra and the EXAFS data. In noncubic phases, a considerable deviation of the local structure from the structure determined from diffraction data is observed only for the tetragonal phase of the BaTiO3 crystal. It is revealed that, in the cubic phase of niobates, the niobium atoms are characterized by significant displacements from the centrosymmetric positions along the threefold axes, so that they are close in the magnitude and the direction to the displacements in the low-temperatures rhombohedral phases.","lang":"eng"}],"citation":{"ieee":"R. Vedrinskiǐ <i>et al.</i>, “Local atomic structure of niobates and titanates from X-ray absorption spectroscopic data,” presented at the CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII), 2009, vol. 51, no. 7, pp. 1394–1398.","mla":"Vedrinskiǐ, Rostislav, et al. <i>Local Atomic Structure of Niobates and Titanates from X-Ray Absorption Spectroscopic Data</i>. Vol. 51, no. 7, Springer, 2009, pp. 1394–98, doi:<a href=\"https://doi.org/10.1134/S106378340907018X\">10.1134/S106378340907018X</a>.","ista":"Vedrinskiǐ R, Kraǐzman V, Lemeshko M, Nazarenko E, Novakovich A, Reznichenko L, Fokin V, Shuvaeva V. 2009. Local atomic structure of niobates and titanates from X-ray absorption spectroscopic data. CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII) vol. 51, 1394–1398.","chicago":"Vedrinskiǐ, Rostislav, V. Kraǐzman, Mikhail Lemeshko, Elena Nazarenko, Alexander Novakovich, Larisa Reznichenko, Vladimir Fokin, and Victoria Shuvaeva. “Local Atomic Structure of Niobates and Titanates from X-Ray Absorption Spectroscopic Data,” 51:1394–98. Springer, 2009. <a href=\"https://doi.org/10.1134/S106378340907018X\">https://doi.org/10.1134/S106378340907018X</a>.","short":"R. Vedrinskiǐ, V. Kraǐzman, M. Lemeshko, E. Nazarenko, A. Novakovich, L. Reznichenko, V. Fokin, V. Shuvaeva, in:, Springer, 2009, pp. 1394–1398.","ama":"Vedrinskiǐ R, Kraǐzman V, Lemeshko M, et al. Local atomic structure of niobates and titanates from X-ray absorption spectroscopic data. In: Vol 51. Springer; 2009:1394-1398. doi:<a href=\"https://doi.org/10.1134/S106378340907018X\">10.1134/S106378340907018X</a>","apa":"Vedrinskiǐ, R., Kraǐzman, V., Lemeshko, M., Nazarenko, E., Novakovich, A., Reznichenko, L., … Shuvaeva, V. (2009). Local atomic structure of niobates and titanates from X-ray absorption spectroscopic data (Vol. 51, pp. 1394–1398). Presented at the CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII), Springer. <a href=\"https://doi.org/10.1134/S106378340907018X\">https://doi.org/10.1134/S106378340907018X</a>"},"publist_id":"4898","publication_status":"published","acknowledgement":"This study was supported by the Russian Founda*tion for Basic Research (project no. 07*02*00796a).","quality_controlled":0,"title":"Local atomic structure of niobates and titanates from X-ray absorption spectroscopic data","page":"1394 - 1398","year":"2009","doi":"10.1134/S106378340907018X","intvolume":"        51","status":"public","day":"12","date_updated":"2021-01-12T06:55:31Z","date_created":"2018-12-11T11:55:55Z","conference":{"name":"CoPoF: 18th All-Russia Conference on Physics of Ferroelectrics (VKS-XVIII)"},"_id":"2136","publisher":"Springer","issue":"7","volume":51,"extern":1,"type":"conference"},{"day":"10","date_created":"2018-12-11T11:55:55Z","date_updated":"2021-01-12T06:55:32Z","intvolume":"         1","status":"public","issue":"1","volume":1,"extern":1,"type":"journal_article","publisher":"Global Science Press","_id":"2137","main_file_link":[{"url":"http://arxiv.org/abs/0910.5743","open_access":"1"}],"abstract":[{"text":"Relying on the quantization rule of Raab and Friedrich [Phys. Rev. A (2009) in press], we derive simple and accurate formulae for the number of rotational states supported by a weakly bound vibrational level of a diatomic molecular ion. We also provide analytic estimates of the rotational constants of any such levels up to threshold for dissociation and obtain a criterion for determining whether a given weakly bound vibrational level is rotationless. The results depend solely on the long-range part of the molecular potential.","lang":"eng"}],"author":[{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Mikhail Lemeshko","first_name":"Mikhail","orcid":"0000-0002-6990-7802","last_name":"Lemeshko"},{"first_name":"Bretislav","full_name":"Frierich, Bretislav","last_name":"Frierich"}],"publication":"Journal of Atomic and Molecular Sciences","month":"10","oa":1,"date_published":"2009-10-10T00:00:00Z","page":"41 - 47","year":"2009","doi":"10.4208/jams.101009.110209a","publication_status":"published","publist_id":"4887","citation":{"ista":"Lemeshko M, Frierich B. 2009. Rotational structure of weakly bound molecular ions. Journal of Atomic and Molecular Sciences. 1(1), 41–47.","ieee":"M. Lemeshko and B. Frierich, “Rotational structure of weakly bound molecular ions,” <i>Journal of Atomic and Molecular Sciences</i>, vol. 1, no. 1. Global Science Press, pp. 41–47, 2009.","mla":"Lemeshko, Mikhail, and Bretislav Frierich. “Rotational Structure of Weakly Bound Molecular Ions.” <i>Journal of Atomic and Molecular Sciences</i>, vol. 1, no. 1, Global Science Press, 2009, pp. 41–47, doi:<a href=\"https://doi.org/10.4208/jams.101009.110209a\">10.4208/jams.101009.110209a</a>.","apa":"Lemeshko, M., &#38; Frierich, B. (2009). Rotational structure of weakly bound molecular ions. <i>Journal of Atomic and Molecular Sciences</i>. Global Science Press. <a href=\"https://doi.org/10.4208/jams.101009.110209a\">https://doi.org/10.4208/jams.101009.110209a</a>","ama":"Lemeshko M, Frierich B. Rotational structure of weakly bound molecular ions. <i>Journal of Atomic and Molecular Sciences</i>. 2009;1(1):41-47. doi:<a href=\"https://doi.org/10.4208/jams.101009.110209a\">10.4208/jams.101009.110209a</a>","short":"M. Lemeshko, B. Frierich, Journal of Atomic and Molecular Sciences 1 (2009) 41–47.","chicago":"Lemeshko, Mikhail, and Bretislav Frierich. “Rotational Structure of Weakly Bound Molecular Ions.” <i>Journal of Atomic and Molecular Sciences</i>. Global Science Press, 2009. <a href=\"https://doi.org/10.4208/jams.101009.110209a\">https://doi.org/10.4208/jams.101009.110209a</a>."},"quality_controlled":0,"title":"Rotational structure of weakly bound molecular ions"},{"doi":"10.1103/PhysRevA.79.012718","year":"2009","quality_controlled":0,"title":"Collisions of paramagnetic molecules in magnetic fields: An analytic model based on Fraunhofer diffraction of matter waves","publication_status":"published","publist_id":"4875","citation":{"apa":"Lemeshko, M., &#38; Friedrich, B. (2009). Collisions of paramagnetic molecules in magnetic fields: An analytic model based on Fraunhofer diffraction of matter waves. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.79.012718\">https://doi.org/10.1103/PhysRevA.79.012718</a>","short":"M. Lemeshko, B. Friedrich, Physical Review A - Atomic, Molecular, and Optical Physics 79 (2009).","chicago":"Lemeshko, Mikhail, and Břetislav Friedrich. “Collisions of Paramagnetic Molecules in Magnetic Fields: An Analytic Model Based on Fraunhofer Diffraction of Matter Waves.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2009. <a href=\"https://doi.org/10.1103/PhysRevA.79.012718\">https://doi.org/10.1103/PhysRevA.79.012718</a>.","ama":"Lemeshko M, Friedrich B. Collisions of paramagnetic molecules in magnetic fields: An analytic model based on Fraunhofer diffraction of matter waves. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2009;79(1). doi:<a href=\"https://doi.org/10.1103/PhysRevA.79.012718\">10.1103/PhysRevA.79.012718</a>","ista":"Lemeshko M, Friedrich B. 2009. Collisions of paramagnetic molecules in magnetic fields: An analytic model based on Fraunhofer diffraction of matter waves. Physical Review A - Atomic, Molecular, and Optical Physics. 79(1).","ieee":"M. Lemeshko and B. Friedrich, “Collisions of paramagnetic molecules in magnetic fields: An analytic model based on Fraunhofer diffraction of matter waves,” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 79, no. 1. American Physical Society, 2009.","mla":"Lemeshko, Mikhail, and Břetislav Friedrich. “Collisions of Paramagnetic Molecules in Magnetic Fields: An Analytic Model Based on Fraunhofer Diffraction of Matter Waves.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 79, no. 1, American Physical Society, 2009, doi:<a href=\"https://doi.org/10.1103/PhysRevA.79.012718\">10.1103/PhysRevA.79.012718</a>."},"abstract":[{"text":"We investigate the effects of a magnetic field on the dynamics of rotationally inelastic collisions of open-shell molecules (Σ2, Σ3, and Π2) with closed-shell atoms. Our treatment makes use of the Fraunhofer model of matter wave scattering and its recent extension to collisions in electric [M. Lemeshko and B. Friedrich, J. Chem. Phys. 129, 024301 (2008)] and radiative fields [M. Lemeshko and B. Friedrich, Int. J. Mass. Spec. 280, 19 (2009)]. A magnetic field aligns the molecule in the space-fixed frame and thereby alters the effective shape of the diffraction target. This significantly affects the differential and integral scattering cross sections. We exemplify our treatment by evaluating the magnetic-field-dependent scattering characteristics of the He-CaH (XΣ+2), He-O2 (XΣ–3), and He-OH (XΠΩ2) systems at thermal collision energies. Since the cross sections can be obtained for different orientations of the magnetic field with respect to the relative velocity vector, the model also offers predictions about the frontal-versus-lateral steric asymmetry of the collisions. The steric asymmetry is found to be almost negligible for the He-OH system, weak for the He-CaH collisions, and strong for the He-O2. While odd ΔM transitions dominate the He-OH [J=3/2,f→J′,e/f] integral cross sections in a magnetic field parallel to the relative velocity vector, even ΔM transitions prevail in the case of the He-CaH (X2Σ+) and He-O2 (XΣ−3) collision systems. For the latter system, the magnetic field opens inelastic channels that are closed in the absence of the field. These involve the transitions N=1,J=0→N′, J′ with J′=N′.","lang":"eng"}],"date_published":"2009-01-30T00:00:00Z","oa":1,"month":"01","publication":"Physical Review A - Atomic, Molecular, and Optical Physics","author":[{"full_name":"Mikhail Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","first_name":"Mikhail","orcid":"0000-0002-6990-7802","last_name":"Lemeshko"},{"last_name":"Friedrich","full_name":"Friedrich, Břetislav","first_name":"Břetislav"}],"type":"journal_article","extern":1,"volume":79,"issue":"1","_id":"2149","main_file_link":[{"url":"http://arxiv.org/abs/0809.3331","open_access":"1"}],"publisher":"American Physical Society","date_created":"2018-12-11T11:55:59Z","date_updated":"2021-01-12T06:55:36Z","day":"30","status":"public","intvolume":"        79"}]