[{"main_file_link":[{"url":"http://arxiv.org/abs/1002.1572","open_access":"1"}],"_id":"2195","publisher":"American Institute of Physics","doi":"10.1063/1.3386530","month":"04","year":"2010","issue":"16","fulldoi":"https://doi.org/10.1063/1.3386530","extern":1,"quality_controlled":0,"day":"28","abstract":[{"lang":"eng","text":"Following upon our recent work on vector correlations in the Ar-NO collisions [Lemeshko and Friedrich, Phys. Chem. Chem. Phys. 12, 1038 (2010)], we compare model results with close-coupling calculations for a range of channels and collision energies for the He-NO system. The striking agreement between the model and exact polarization moments indicates that the stereodynamics of rotationally inelastic atom-molecule collisions at thermal energies is governed by diffraction of matter waves from a two-dimensional repulsive core of the atom-molecule potential. Furthermore, the model polarization moments characterizing the He-NO, He- O2, He-OH, and He-CaH stereodynamics are found to coalesce into a single, distinctive pattern, which can serve as a &quot;fingerprint&quot; to identify diffraction-driven stereodynamics in future work. "}],"type":"journal_article","publist_id":"4779","acknowledgement":"Financial support of the Spanish Ministry of Science and Innovation (Grant No. CTQ2008-02578) is gratefully acknowledged.","date_created":"2018-12-11T11:56:16Z","intvolume":"       132","title":"Communications: When diffraction rules the stereodynamics of rotationally inelastic collisions","author":[{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Mikhail Lemeshko","orcid":"0000-0002-6990-7802","last_name":"Lemeshko","first_name":"Mikhail"},{"full_name":"Jambrina, Pablo G","last_name":"Jambrina","first_name":"Pablo"},{"last_name":"De Miranda","full_name":"De Miranda, Marcelo P","first_name":"Marcelo"},{"first_name":"Břetislav","full_name":"Friedrich, Břetislav","last_name":"Friedrich"}],"publication_status":"published","citation":{"ieee":"M. Lemeshko, P. Jambrina, M. De Miranda, and B. Friedrich, “Communications: When diffraction rules the stereodynamics of rotationally inelastic collisions,” <i>Journal of Chemical Physics</i>, vol. 132, no. 16. American Institute of Physics, 2010.","chicago":"Lemeshko, Mikhail, Pablo Jambrina, Marcelo De Miranda, and Břetislav Friedrich. “Communications: When Diffraction Rules the Stereodynamics of Rotationally Inelastic Collisions.” <i>Journal of Chemical Physics</i>. American Institute of Physics, 2010. <a href=\"https://doi.org/10.1063/1.3386530\">https://doi.org/10.1063/1.3386530</a>.","short":"M. Lemeshko, P. Jambrina, M. De Miranda, B. Friedrich, Journal of Chemical Physics 132 (2010).","ama":"Lemeshko M, Jambrina P, De Miranda M, Friedrich B. Communications: When diffraction rules the stereodynamics of rotationally inelastic collisions. <i>Journal of Chemical Physics</i>. 2010;132(16). doi:<a href=\"https://doi.org/10.1063/1.3386530\">10.1063/1.3386530</a>","ista":"Lemeshko M, Jambrina P, De Miranda M, Friedrich B. 2010. Communications: When diffraction rules the stereodynamics of rotationally inelastic collisions. Journal of Chemical Physics. 132(16).","apa":"Lemeshko, M., Jambrina, P., De Miranda, M., &#38; Friedrich, B. (2010). Communications: When diffraction rules the stereodynamics of rotationally inelastic collisions. <i>Journal of Chemical Physics</i>. American Institute of Physics. <a href=\"https://doi.org/10.1063/1.3386530\">https://doi.org/10.1063/1.3386530</a>","mla":"Lemeshko, Mikhail, et al. “Communications: When Diffraction Rules the Stereodynamics of Rotationally Inelastic Collisions.” <i>Journal of Chemical Physics</i>, vol. 132, no. 16, American Institute of Physics, 2010, doi:<a href=\"https://doi.org/10.1063/1.3386530\">10.1063/1.3386530</a>."},"date_published":"2010-04-28T00:00:00Z","volume":132,"oa":1,"status":"public","date_updated":"2021-01-12T06:55:54Z","publication":"Journal of Chemical Physics"},{"publication_status":"published","author":[{"first_name":"Mikhail","full_name":"Mikhail Lemeshko","orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko"},{"last_name":"Friedrich","full_name":"Friedrich, Břetislav","first_name":"Břetislav"}],"date_created":"2018-12-11T11:56:16Z","intvolume":"       114","title":"Fine-tuning molecular energy levels by nonresonant laser pulses","publist_id":"4777","date_published":"2010-09-16T00:00:00Z","volume":114,"oa":1,"citation":{"chicago":"Lemeshko, Mikhail, and Břetislav Friedrich. “Fine-Tuning Molecular Energy Levels by Nonresonant Laser Pulses.” <i>Journal of Physical Chemistry A</i>. American Chemical Society, 2010. <a href=\"https://doi.org/10.1021/jp1032299\">https://doi.org/10.1021/jp1032299</a>.","ieee":"M. Lemeshko and B. Friedrich, “Fine-tuning molecular energy levels by nonresonant laser pulses,” <i>Journal of Physical Chemistry A</i>, vol. 114, no. 36. American Chemical Society, pp. 9848–9854, 2010.","ista":"Lemeshko M, Friedrich B. 2010. Fine-tuning molecular energy levels by nonresonant laser pulses. Journal of Physical Chemistry A. 114(36), 9848–9854.","mla":"Lemeshko, Mikhail, and Břetislav Friedrich. “Fine-Tuning Molecular Energy Levels by Nonresonant Laser Pulses.” <i>Journal of Physical Chemistry A</i>, vol. 114, no. 36, American Chemical Society, 2010, pp. 9848–54, doi:<a href=\"https://doi.org/10.1021/jp1032299\">10.1021/jp1032299</a>.","apa":"Lemeshko, M., &#38; Friedrich, B. (2010). Fine-tuning molecular energy levels by nonresonant laser pulses. <i>Journal of Physical Chemistry A</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jp1032299\">https://doi.org/10.1021/jp1032299</a>","ama":"Lemeshko M, Friedrich B. Fine-tuning molecular energy levels by nonresonant laser pulses. <i>Journal of Physical Chemistry A</i>. 2010;114(36):9848-9854. doi:<a href=\"https://doi.org/10.1021/jp1032299\">10.1021/jp1032299</a>","short":"M. Lemeshko, B. Friedrich, Journal of Physical Chemistry A 114 (2010) 9848–9854."},"publication":"Journal of Physical Chemistry A","date_updated":"2021-01-12T06:55:55Z","status":"public","page":"9848 - 9854","_id":"2196","main_file_link":[{"url":"http://arxiv.org/abs/1004.1742","open_access":"1"}],"month":"09","doi":"10.1021/jp1032299","publisher":"American Chemical Society","fulldoi":"https://doi.org/10.1021/jp1032299","issue":"36","extern":1,"year":"2010","type":"journal_article","abstract":[{"text":"We evaluate the shifts imparted to vibrational and rotational levels of a linear molecule by a nonresonant laser field at intensities of up to 10 12 W/cm2. Both types of shift are found to be either positive or negative, depending on the initial rotational state acted upon by the field. An adiabatic field-molecule interaction imparts a rotational energy shift which is negative and exceeds the concomitant positive vibrational shift by a few orders of magnitude. The rovibrational states are thus pushed downward in such a field. A nonresonant pulsed laser field that interacts nonadiabatically with the molecule is found to impart rotational and vibrational shifts of the same order of magnitude. The nonadiabatic energy transfer occurs most readily at a pulse duration which amounts to about a tenth of the molecule's rotational period and vanishes when the sudden regime is attained for shorter pulses. We applied our treatment to the much-studied 87Rb2 molecule in the last bound vibrational levels of its lowest singlet and triplet electronic states. Our calculations indicate that 15 and 1.5 ns laser pulses of an intensity in excess of 5 × 109 W/cm2 are capable of dissociating the molecule due to the vibrational shift. Lesser shifts can be used to fine-tune the rovibrational levels and thereby affect collisional resonances by the nonresonant light. The energy shifts due to laser intensities of 109 W/cm2 may be discernible spectroscopically, with a 10 MHz resolution.","lang":"eng"}],"day":"16","quality_controlled":0},{"publication":"Physical Review A - Atomic, Molecular, and Optical Physics","date_updated":"2021-01-12T06:55:55Z","status":"public","volume":82,"date_published":"2010-08-18T00:00:00Z","oa":1,"citation":{"apa":"Lemeshko, M., &#38; Friedrich, B. (2010). Multiple scattering of matter waves: An analytic model of the refractive index for atomic and molecular gases. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.82.022711\">https://doi.org/10.1103/PhysRevA.82.022711</a>","mla":"Lemeshko, Mikhail, and Břetislav Friedrich. “Multiple Scattering of Matter Waves: An Analytic Model of the Refractive Index for Atomic and Molecular Gases.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 82, no. 2, American Physical Society, 2010, doi:<a href=\"https://doi.org/10.1103/PhysRevA.82.022711\">10.1103/PhysRevA.82.022711</a>.","ista":"Lemeshko M, Friedrich B. 2010. Multiple scattering of matter waves: An analytic model of the refractive index for atomic and molecular gases. Physical Review A - Atomic, Molecular, and Optical Physics. 82(2).","short":"M. Lemeshko, B. Friedrich, Physical Review A - Atomic, Molecular, and Optical Physics 82 (2010).","ama":"Lemeshko M, Friedrich B. Multiple scattering of matter waves: An analytic model of the refractive index for atomic and molecular gases. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2010;82(2). doi:<a href=\"https://doi.org/10.1103/PhysRevA.82.022711\">10.1103/PhysRevA.82.022711</a>","chicago":"Lemeshko, Mikhail, and Břetislav Friedrich. “Multiple Scattering of Matter Waves: An Analytic Model of the Refractive Index for Atomic and Molecular Gases.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2010. <a href=\"https://doi.org/10.1103/PhysRevA.82.022711\">https://doi.org/10.1103/PhysRevA.82.022711</a>.","ieee":"M. Lemeshko and B. Friedrich, “Multiple scattering of matter waves: An analytic model of the refractive index for atomic and molecular gases,” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 82, no. 2. American Physical Society, 2010."},"author":[{"full_name":"Mikhail Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","last_name":"Lemeshko","orcid":"0000-0002-6990-7802","first_name":"Mikhail"},{"full_name":"Friedrich, Břetislav","last_name":"Friedrich","first_name":"Břetislav"}],"publication_status":"published","date_created":"2018-12-11T11:56:16Z","intvolume":"        82","title":"Multiple scattering of matter waves: An analytic model of the refractive index for atomic and molecular gases","publist_id":"4778","type":"journal_article","abstract":[{"text":"We present an analytic model of the refractive index for matter waves propagating through atomic or molecular gases. The model, which combines the Wentzel-Kramers-Brillouin (WKB) treatment of the long-range attraction with the Fraunhofer model treatment of the short-range repulsion, furnishes a refractive index in compelling agreement with recent experiments of Jacquey [Phys. Rev. Lett.PRLTAO0031-900710.1103/PhysRevLett.98.240405 98, 240405 (2007)] on Li atom matter waves passing through dilute noble gases. We show that the diffractive contribution, which arises from scattering by a two-dimensional &quot;hard core&quot; of the potential, is essential for obtaining a correct imaginary part of the refractive index.","lang":"eng"}],"day":"18","quality_controlled":0,"issue":"2","fulldoi":"https://doi.org/10.1103/PhysRevA.82.022711","extern":1,"year":"2010","month":"08","doi":"10.1103/PhysRevA.82.022711","publisher":"American Physical Society","_id":"2197","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1003.0854"}]},{"extern":"1","year":"2010","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0033-4545"],"eissn":["1365-3075"]},"oa_version":"Published Version","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1351/pac-con-10-09-04"}],"month":"10","article_type":"original","date_updated":"2024-10-14T12:21:48Z","date_created":"2023-08-01T09:48:11Z","citation":{"ieee":"R. Klajn, “Immobilized azobenzenes for the construction of photoresponsive materials,” <i>Pure and Applied Chemistry</i>, vol. 82, no. 12. De Gruyter, pp. 2247–2279, 2010.","chicago":"Klajn, Rafal. “Immobilized Azobenzenes for the Construction of Photoresponsive Materials.” <i>Pure and Applied Chemistry</i>. De Gruyter, 2010. <a href=\"https://doi.org/10.1351/pac-con-10-09-04\">https://doi.org/10.1351/pac-con-10-09-04</a>.","short":"R. Klajn, Pure and Applied Chemistry 82 (2010) 2247–2279.","ama":"Klajn R. Immobilized azobenzenes for the construction of photoresponsive materials. <i>Pure and Applied Chemistry</i>. 2010;82(12):2247-2279. doi:<a href=\"https://doi.org/10.1351/pac-con-10-09-04\">10.1351/pac-con-10-09-04</a>","ista":"Klajn R. 2010. Immobilized azobenzenes for the construction of photoresponsive materials. Pure and Applied Chemistry. 82(12), 2247–2279.","mla":"Klajn, Rafal. “Immobilized Azobenzenes for the Construction of Photoresponsive Materials.” <i>Pure and Applied Chemistry</i>, vol. 82, no. 12, De Gruyter, 2010, pp. 2247–79, doi:<a href=\"https://doi.org/10.1351/pac-con-10-09-04\">10.1351/pac-con-10-09-04</a>.","apa":"Klajn, R. (2010). Immobilized azobenzenes for the construction of photoresponsive materials. <i>Pure and Applied Chemistry</i>. De Gruyter. <a href=\"https://doi.org/10.1351/pac-con-10-09-04\">https://doi.org/10.1351/pac-con-10-09-04</a>"},"oa":1,"fulldoi":"https://doi.org/10.1351/pac-con-10-09-04","issue":"12","day":"15","abstract":[{"lang":"eng","text":"The immobilization of molecular switches onto inorganic supports has recently become a hot topic as it can give rise to novel hybrid materials in which the properties of the two components are mutually enhanced. Even more attractive is the concept of “transferring” the switchable characteristics of single layers of organic molecules onto the underlying inorganic components, rendering them responsive to external stimuli as well. Of the various molecular switches studied, azobenzene (AB) has arguably attracted most attention due to its simple molecular structure, and because its “trigger” (light) is a noninvasive one, it can be delivered instantaneously, and into a precise location. In order to fully realize its potential, however, it is necessary to immobilize AB onto solid supports. It is the goal of this manuscript to comprehensively yet concisely review such hybrid systems which comprise AB forming well-defined self-assembled monolayers (SAMs) on planar and curved (colloidal and nanoporous) inorganic surfaces. I discuss methods to immobilize AB derivatives onto surfaces, strategies to ensure efficient AB isomerization, ways to monitor the switching process, properties of these switchable hybrid materials, and, last but not least, their emerging applications."}],"quality_controlled":"1","_id":"13409","keyword":["General Chemical Engineering","General Chemistry"],"publisher":"De Gruyter","doi":"10.1351/pac-con-10-09-04","status":"public","page":"2247-2279","publication":"Pure and Applied Chemistry","language":[{"iso":"eng"}],"publication_status":"published","author":[{"first_name":"Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal","last_name":"Klajn"}],"article_processing_charge":"No","title":"Immobilized azobenzenes for the construction of photoresponsive materials","intvolume":"        82","volume":82,"date_published":"2010-10-15T00:00:00Z"},{"month":"03","external_id":{"pmid":["20218598"]},"scopus_import":"1","oa_version":"None","type":"journal_article","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"extern":"1","year":"2010","citation":{"ama":"Coskun A, Wesson PJ, Klajn R, et al. Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory. <i>Journal of the American Chemical Society</i>. 2010;132(12):4310-4320. doi:<a href=\"https://doi.org/10.1021/ja9102327\">10.1021/ja9102327</a>","short":"A. Coskun, P.J. Wesson, R. Klajn, A. Trabolsi, L. Fang, M.A. Olson, S.K. Dey, B.A. Grzybowski, J.F. Stoddart, Journal of the American Chemical Society 132 (2010) 4310–4320.","apa":"Coskun, A., Wesson, P. J., Klajn, R., Trabolsi, A., Fang, L., Olson, M. A., … Stoddart, J. F. (2010). Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja9102327\">https://doi.org/10.1021/ja9102327</a>","mla":"Coskun, Ali, et al. “Molecular-Mechanical Switching at the Nanoparticle−solvent Interface: Practice and Theory.” <i>Journal of the American Chemical Society</i>, vol. 132, no. 12, American Chemical Society, 2010, pp. 4310–20, doi:<a href=\"https://doi.org/10.1021/ja9102327\">10.1021/ja9102327</a>.","ista":"Coskun A, Wesson PJ, Klajn R, Trabolsi A, Fang L, Olson MA, Dey SK, Grzybowski BA, Stoddart JF. 2010. Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory. Journal of the American Chemical Society. 132(12), 4310–4320.","ieee":"A. Coskun <i>et al.</i>, “Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory,” <i>Journal of the American Chemical Society</i>, vol. 132, no. 12. American Chemical Society, pp. 4310–4320, 2010.","chicago":"Coskun, Ali, Paul J. Wesson, Rafal Klajn, Ali Trabolsi, Lei Fang, Mark A. Olson, Sanjeev K. Dey, Bartosz A. Grzybowski, and J. Fraser Stoddart. “Molecular-Mechanical Switching at the Nanoparticle−solvent Interface: Practice and Theory.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2010. <a href=\"https://doi.org/10.1021/ja9102327\">https://doi.org/10.1021/ja9102327</a>."},"date_created":"2023-08-01T09:48:27Z","article_type":"original","date_updated":"2023-08-08T08:00:31Z","doi":"10.1021/ja9102327","publisher":"American Chemical Society","_id":"13410","keyword":["Colloid and Surface Chemistry","Biochemistry","General Chemistry","Catalysis"],"abstract":[{"text":"A range (Au, Pt, Pd) of metal nanoparticles (MNPs) has been prepared and functionalized with (a) redox-active stalks containing tetrathiafulvalene (TTF) units, (b) [2]pseudorotaxanes formed between these stalks and cyclobis(paraquat-p-phenylene) (CBPQT4+) rings, and (c) bistable [2]rotaxane molecules where the dumbbell component contains a 1,5-dioxynaphthalene (DNP) unit, as well as a TTF unit, encircled by a CBPQT4+ ring. It transpires that the molecules present in (a) and (c) and the supermolecules described in (b) retain their switching characteristics, previously observed in solution, when they are immobilized onto MNPs. Moreover, their oxidation potentials depend on the fraction, χ, of the molecules or supermolecules on the surface of the nanoparticles. A variation in χ affects the oxidation potentials of the TTF units to the extent that switching can be subjected to fine tuning as a result. Specifically, increasing χ results in positive shifts (i) in the oxidation potentials of the TTF unit in (a)−(c) and (ii) the reduction potentials of the CBPQT4+ rings in (c). These shifts can be attributed to an increase in the electrostatic potential surrounding the MNPs. Both the magnitude and the direction of these shifts are reproduced by a model, based on the Poisson−Boltzmann equation coupled with charge-regulating boundary conditions. Furthermore, the kinetics of relaxation from the metastable state coconformation (MSCC) to the ground-state coconformation (GSCC) of the bistable [2]rotaxane molecules also depends on χ, as well as on the nanoparticle diameter. Increasing either of these parameters accelerates the rate of relaxation from the MSCC to the GSCC. This rate is a function of (i) the activation energy for the relaxation process associated with the bistable [2]rotaxane molecules in solution and (ii) the electrostatic potential surrounding the MNPs. The electrostatic potential depends on (i) the diameter of the MNPs, (ii) the amount of the bistable [2]rotaxane molecules on the surface of the MNPs, and (iii) the equilibrium distribution of the CBPQT4+ rings between the DNP and TTF recognition sites in the GSCC. This electrostatic potential has also been quantified using the Poisson−Boltzmann equation, leading to faithful estimates of the rate constants.","lang":"eng"}],"day":"31","quality_controlled":"1","issue":"12","fulldoi":"https://doi.org/10.1021/ja9102327","pmid":1,"volume":132,"date_published":"2010-03-31T00:00:00Z","publication_status":"published","author":[{"first_name":"Ali","full_name":"Coskun, Ali","last_name":"Coskun"},{"full_name":"Wesson, Paul J.","last_name":"Wesson","first_name":"Paul J."},{"last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal","first_name":"Rafal"},{"first_name":"Ali","full_name":"Trabolsi, Ali","last_name":"Trabolsi"},{"first_name":"Lei","last_name":"Fang","full_name":"Fang, Lei"},{"first_name":"Mark A.","last_name":"Olson","full_name":"Olson, Mark A."},{"last_name":"Dey","full_name":"Dey, Sanjeev K.","first_name":"Sanjeev K."},{"last_name":"Grzybowski","full_name":"Grzybowski, Bartosz A.","first_name":"Bartosz A."},{"full_name":"Stoddart, J. Fraser","last_name":"Stoddart","first_name":"J. Fraser"}],"intvolume":"       132","title":"Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory","article_processing_charge":"No","language":[{"iso":"eng"}],"publication":"Journal of the American Chemical Society","page":"4310-4320","status":"public"},{"title":"Nanoparticles that “remember” temperature","intvolume":"         6","article_processing_charge":"No","publication_status":"published","author":[{"full_name":"Klajn, Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal"},{"first_name":"Kevin P.","full_name":"Browne, Kevin P.","last_name":"Browne"},{"first_name":"Siowling","last_name":"Soh","full_name":"Soh, Siowling"},{"full_name":"Grzybowski, Bartosz A.","last_name":"Grzybowski","first_name":"Bartosz A."}],"volume":6,"pmid":1,"date_published":"2010-07-05T00:00:00Z","publication":"Small","page":"1385-1387","status":"public","language":[{"iso":"eng"}],"keyword":["Biomaterials","Biotechnology","General Materials Science","General Chemistry"],"_id":"13411","doi":"10.1002/smll.200902272","publisher":"Wiley","issue":"13","fulldoi":"https://doi.org/10.1002/smll.200902272","quality_controlled":"1","abstract":[{"lang":"eng","text":"Photoresponsive gold nanoparticles dispersed in a solid/frozen matrix provide a basis for sensors that “remember” whether the sample has ever exceeded the melting temperature of the matrix. The operation of these sensors rests on the ability to photoinduce metastable electric dipoles on NP surfaces – upon melting, these dipoles drive NP aggregation, precipitation, and crosslinking. These events are manifested by a pronounced color change."}],"day":"05","date_created":"2023-08-01T09:48:38Z","citation":{"ieee":"R. Klajn, K. P. Browne, S. Soh, and B. A. Grzybowski, “Nanoparticles that ‘remember’ temperature,” <i>Small</i>, vol. 6, no. 13. Wiley, pp. 1385–1387, 2010.","chicago":"Klajn, Rafal, Kevin P. Browne, Siowling Soh, and Bartosz A. Grzybowski. “Nanoparticles That ‘Remember’ Temperature.” <i>Small</i>. Wiley, 2010. <a href=\"https://doi.org/10.1002/smll.200902272\">https://doi.org/10.1002/smll.200902272</a>.","ama":"Klajn R, Browne KP, Soh S, Grzybowski BA. Nanoparticles that “remember” temperature. <i>Small</i>. 2010;6(13):1385-1387. doi:<a href=\"https://doi.org/10.1002/smll.200902272\">10.1002/smll.200902272</a>","short":"R. Klajn, K.P. Browne, S. Soh, B.A. Grzybowski, Small 6 (2010) 1385–1387.","ista":"Klajn R, Browne KP, Soh S, Grzybowski BA. 2010. Nanoparticles that “remember” temperature. Small. 6(13), 1385–1387.","mla":"Klajn, Rafal, et al. “Nanoparticles That ‘Remember’ Temperature.” <i>Small</i>, vol. 6, no. 13, Wiley, 2010, pp. 1385–87, doi:<a href=\"https://doi.org/10.1002/smll.200902272\">10.1002/smll.200902272</a>.","apa":"Klajn, R., Browne, K. P., Soh, S., &#38; Grzybowski, B. A. (2010). Nanoparticles that “remember” temperature. <i>Small</i>. Wiley. <a href=\"https://doi.org/10.1002/smll.200902272\">https://doi.org/10.1002/smll.200902272</a>"},"date_updated":"2023-08-08T08:15:25Z","article_type":"original","scopus_import":"1","oa_version":"None","external_id":{"pmid":["20521264"]},"month":"07","year":"2010","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1613-6829"],"issn":["1613-6810"]},"type":"journal_article"},{"date_created":"2023-08-01T09:49:07Z","citation":{"ista":"Klajn R, Stoddart JF, Grzybowski BA. 2010. Nanoparticles functionalised with reversible molecular and supramolecular switches. Chemical Society Reviews. 39(6), 2203–2237.","apa":"Klajn, R., Stoddart, J. F., &#38; Grzybowski, B. A. (2010). Nanoparticles functionalised with reversible molecular and supramolecular switches. <i>Chemical Society Reviews</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/b920377j\">https://doi.org/10.1039/b920377j</a>","mla":"Klajn, Rafal, et al. “Nanoparticles Functionalised with Reversible Molecular and Supramolecular Switches.” <i>Chemical Society Reviews</i>, vol. 39, no. 6, Royal Society of Chemistry, 2010, pp. 2203–37, doi:<a href=\"https://doi.org/10.1039/b920377j\">10.1039/b920377j</a>.","short":"R. Klajn, J.F. Stoddart, B.A. Grzybowski, Chemical Society Reviews 39 (2010) 2203–2237.","ama":"Klajn R, Stoddart JF, Grzybowski BA. Nanoparticles functionalised with reversible molecular and supramolecular switches. <i>Chemical Society Reviews</i>. 2010;39(6):2203-2237. doi:<a href=\"https://doi.org/10.1039/b920377j\">10.1039/b920377j</a>","chicago":"Klajn, Rafal, J. Fraser Stoddart, and Bartosz A. Grzybowski. “Nanoparticles Functionalised with Reversible Molecular and Supramolecular Switches.” <i>Chemical Society Reviews</i>. Royal Society of Chemistry, 2010. <a href=\"https://doi.org/10.1039/b920377j\">https://doi.org/10.1039/b920377j</a>.","ieee":"R. Klajn, J. F. Stoddart, and B. A. Grzybowski, “Nanoparticles functionalised with reversible molecular and supramolecular switches,” <i>Chemical Society Reviews</i>, vol. 39, no. 6. Royal Society of Chemistry, pp. 2203–2237, 2010."},"article_type":"original","date_updated":"2023-08-08T08:19:00Z","oa_version":"None","scopus_import":"1","month":"04","external_id":{"pmid":["20407689"]},"extern":"1","year":"2010","type":"journal_article","publication_identifier":{"issn":["0306-0012"],"eissn":["1460-4744"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","last_name":"Klajn","full_name":"Klajn, Rafal"},{"first_name":"J. Fraser","last_name":"Stoddart","full_name":"Stoddart, J. Fraser"},{"first_name":"Bartosz A.","full_name":"Grzybowski, Bartosz A.","last_name":"Grzybowski"}],"publication_status":"published","article_processing_charge":"No","title":"Nanoparticles functionalised with reversible molecular and supramolecular switches","intvolume":"        39","volume":39,"pmid":1,"date_published":"2010-04-21T00:00:00Z","status":"public","page":"2203-2237","publication":"Chemical Society Reviews","language":[{"iso":"eng"}],"_id":"13412","keyword":["General Chemistry"],"publisher":"Royal Society of Chemistry","doi":"10.1039/b920377j","fulldoi":"https://doi.org/10.1039/b920377j","issue":"6","day":"21","abstract":[{"lang":"eng","text":"Nanoparticles (NPs) and molecular/supramolecular switches have attracted considerable interest during the past decade on account of their unique properties and prominent roles in the fields of organic chemistry and materials science. Materials derived from the combination of these two components are now emerging in the literature. This critical review evaluates materials which comprise NPs functionalised with well-defined self-assembled monolayers of molecular and supramolecular switches. We draw attention to the fact that immobilisation of switches on NPs does not, in general, hamper their switching ability, although it can impart new properties on the supporting particles. This premise leads us to the discussion of systems in which switching on the surfaces of NPs can be used to modulate reversibly a range of NP properties—optical, fluorescent, electrical, magnetic—as well as the controlled release of small molecules. Finally, we discuss examples in which molecular switches direct reversible self-assembly of NPs (308 references)."}],"quality_controlled":"1"},{"page":"21 - 37","date_updated":"2021-01-12T06:50:56Z","status":"public","publication":"Inventiones Mathematicae","author":[{"first_name":"Tamas","full_name":"Tamas Hausel","last_name":"Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87"}],"publication_status":"published","acknowledgement":"This work has been supported by a Royal Society University Research Fellowship, NSF grants DMS-0305505 and DMS-0604775 and an Alfred Sloan Fellowship 2005-2007.","publist_id":"5730","date_created":"2018-12-11T11:52:11Z","intvolume":"       181","title":"Kac's conjecture from Nakajima quiver varieties","citation":{"ieee":"T. Hausel, “Kac’s conjecture from Nakajima quiver varieties,” <i>Inventiones Mathematicae</i>, vol. 181, no. 1. Springer, pp. 21–37, 2010.","chicago":"Hausel, Tamás. “Kac’s Conjecture from Nakajima Quiver Varieties.” <i>Inventiones Mathematicae</i>. Springer, 2010. <a href=\"https://doi.org/10.1007/s00222-010-0241-3\">https://doi.org/10.1007/s00222-010-0241-3</a>.","ama":"Hausel T. Kac’s conjecture from Nakajima quiver varieties. <i>Inventiones Mathematicae</i>. 2010;181(1):21-37. doi:<a href=\"https://doi.org/10.1007/s00222-010-0241-3\">10.1007/s00222-010-0241-3</a>","short":"T. Hausel, Inventiones Mathematicae 181 (2010) 21–37.","ista":"Hausel T. 2010. Kac’s conjecture from Nakajima quiver varieties. Inventiones Mathematicae. 181(1), 21–37.","apa":"Hausel, T. (2010). Kac’s conjecture from Nakajima quiver varieties. <i>Inventiones Mathematicae</i>. Springer. <a href=\"https://doi.org/10.1007/s00222-010-0241-3\">https://doi.org/10.1007/s00222-010-0241-3</a>","mla":"Hausel, Tamás. “Kac’s Conjecture from Nakajima Quiver Varieties.” <i>Inventiones Mathematicae</i>, vol. 181, no. 1, Springer, 2010, pp. 21–37, doi:<a href=\"https://doi.org/10.1007/s00222-010-0241-3\">10.1007/s00222-010-0241-3</a>."},"oa":1,"volume":181,"date_published":"2010-07-01T00:00:00Z","fulldoi":"https://doi.org/10.1007/s00222-010-0241-3","issue":"1","extern":1,"year":"2010","day":"01","type":"journal_article","abstract":[{"text":"We prove a generating function formula for the Betti numbers of Nakajima quiver varieties. We prove that it is a q-deformation of the Weyl-Kac character formula. In particular this implies that the constant term of the polynomial counting the number of absolutely indecomposable representations of a quiver equals the multiplicity of a certain weight in the corresponding Kac-Moody algebra, which was conjectured by Kac in 1982.","lang":"eng"}],"quality_controlled":0,"_id":"1465","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/0811.1569"}],"month":"07","publisher":"Springer","doi":"10.1007/s00222-010-0241-3"},{"status":"public","date_updated":"2021-01-12T06:50:56Z","page":"131 - 135","publication":"Comptes Rendus Mathematique","publist_id":"5731","title":"Topology of character varieties and representations of quivers","date_created":"2018-12-11T11:52:11Z","intvolume":"       348","publication_status":"published","author":[{"first_name":"Tamas","full_name":"Tamas Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","last_name":"Hausel"},{"first_name":"Emmanuel","full_name":"Letellier, Emmanuel","last_name":"Letellier"},{"first_name":"Fernando","last_name":"Rodríguez Villegas","full_name":"Rodríguez Villegas, Fernando"}],"citation":{"ieee":"T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Topology of character varieties and representations of quivers,” <i>Comptes Rendus Mathematique</i>, vol. 348, no. 3–4. Elsevier, pp. 131–135, 2010.","chicago":"Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Topology of Character Varieties and Representations of Quivers.” <i>Comptes Rendus Mathematique</i>. Elsevier, 2010. <a href=\"https://doi.org/10.1016/j.crma.2010.01.025\">https://doi.org/10.1016/j.crma.2010.01.025</a>.","ama":"Hausel T, Letellier E, Rodríguez Villegas F. Topology of character varieties and representations of quivers. <i>Comptes Rendus Mathematique</i>. 2010;348(3-4):131-135. doi:<a href=\"https://doi.org/10.1016/j.crma.2010.01.025\">10.1016/j.crma.2010.01.025</a>","short":"T. Hausel, E. Letellier, F. Rodríguez Villegas, Comptes Rendus Mathematique 348 (2010) 131–135.","ista":"Hausel T, Letellier E, Rodríguez Villegas F. 2010. Topology of character varieties and representations of quivers. Comptes Rendus Mathematique. 348(3–4), 131–135.","mla":"Hausel, Tamás, et al. “Topology of Character Varieties and Representations of Quivers.” <i>Comptes Rendus Mathematique</i>, vol. 348, no. 3–4, Elsevier, 2010, pp. 131–35, doi:<a href=\"https://doi.org/10.1016/j.crma.2010.01.025\">10.1016/j.crma.2010.01.025</a>.","apa":"Hausel, T., Letellier, E., &#38; Rodríguez Villegas, F. (2010). Topology of character varieties and representations of quivers. <i>Comptes Rendus Mathematique</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.crma.2010.01.025\">https://doi.org/10.1016/j.crma.2010.01.025</a>"},"volume":348,"oa":1,"date_published":"2010-02-01T00:00:00Z","year":"2010","fulldoi":"https://doi.org/10.1016/j.crma.2010.01.025","issue":"3-4","extern":1,"quality_controlled":0,"day":"01","type":"journal_article","abstract":[{"text":"In Hausel et al. (2008) [10] we presented a conjecture generalizing the Cauchy formula for Macdonald polynomial. This conjecture encodes the mixed Hodge polynomials of the character varieties of representations of the fundamental group of a punctured Riemann surface of genus g. We proved several results which support this conjecture. Here we announce new results which are consequences of those in Hausel et al. (2008) [10].","lang":"eng"}],"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/0905.3491"}],"_id":"1466","publisher":"Elsevier","doi":"10.1016/j.crma.2010.01.025","month":"02"},{"date_updated":"2021-01-12T06:50:57Z","status":"public","publication":"The Many Facets of Geometry: A Tribute to Nigel Hitchin","citation":{"ieee":"T. Hausel, “S-Duality in HyperkäHler Hodge Theory,” in <i>The Many Facets of Geometry: A Tribute to Nigel Hitchin</i>, Oxford University Press, 2010.","chicago":"Hausel, Tamás. “S-Duality in HyperkäHler Hodge Theory.” In <i>The Many Facets of Geometry: A Tribute to Nigel Hitchin</i>. Oxford University Press, 2010. <a href=\"https://doi.org/10.1093/acprof:oso/9780199534920.003.0016\">https://doi.org/10.1093/acprof:oso/9780199534920.003.0016</a>.","short":"T. Hausel, in:, The Many Facets of Geometry: A Tribute to Nigel Hitchin, Oxford University Press, 2010.","ama":"Hausel T. S-Duality in HyperkäHler Hodge Theory. In: <i>The Many Facets of Geometry: A Tribute to Nigel Hitchin</i>. Oxford University Press; 2010. doi:<a href=\"https://doi.org/10.1093/acprof:oso/9780199534920.003.0016\">10.1093/acprof:oso/9780199534920.003.0016</a>","ista":"Hausel T. 2010.S-Duality in HyperkäHler Hodge Theory. In: The Many Facets of Geometry: A Tribute to Nigel Hitchin. .","apa":"Hausel, T. (2010). S-Duality in HyperkäHler Hodge Theory. In <i>The Many Facets of Geometry: A Tribute to Nigel Hitchin</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/acprof:oso/9780199534920.003.0016\">https://doi.org/10.1093/acprof:oso/9780199534920.003.0016</a>","mla":"Hausel, Tamás. “S-Duality in HyperkäHler Hodge Theory.” <i>The Many Facets of Geometry: A Tribute to Nigel Hitchin</i>, Oxford University Press, 2010, doi:<a href=\"https://doi.org/10.1093/acprof:oso/9780199534920.003.0016\">10.1093/acprof:oso/9780199534920.003.0016</a>."},"oa":1,"date_published":"2010-09-01T00:00:00Z","publist_id":"5729","title":"S-Duality in HyperkäHler Hodge Theory","date_created":"2018-12-11T11:52:12Z","publication_status":"published","author":[{"full_name":"Tamas Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","last_name":"Hausel","first_name":"Tamas"}],"quality_controlled":0,"day":"01","type":"book_chapter","abstract":[{"lang":"eng","text":"This chapter surveys the motivations, related results, and progress made towards the following problem, raised by Hitchin in 1995: What is the space of L2 harmonic forms on the moduli space of Higgs bundles on a Riemann surface?"}],"year":"2010","fulldoi":"https://doi.org/10.1093/acprof:oso/9780199534920.003.0016","extern":1,"publisher":"Oxford University Press","doi":"10.1093/acprof:oso/9780199534920.003.0016","month":"09","main_file_link":[{"url":"http://arxiv.org/abs/0709.0504","open_access":"1"}],"_id":"1468"},{"editor":[{"full_name":"Graimann, Bernhard","last_name":"Graimann","first_name":"Bernhard"},{"full_name":"Pfurtscheller, Gert","last_name":"Pfurtscheller","first_name":"Gert"},{"first_name":"Brendan","full_name":"Allison, Brendan","last_name":"Allison"}],"department":[{"_id":"ScienComp"}],"publication":"Brain-Computer Interfaces","page":"331-355","status":"public","language":[{"iso":"eng"}],"publication_status":"published","author":[{"first_name":"Alois","full_name":"Schlögl, Alois","last_name":"Schlögl","orcid":"0000-0002-5621-8100","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Vidaurre, Carmen","last_name":"Vidaurre","first_name":"Carmen"},{"full_name":"Müller, Klaus-Robert","last_name":"Müller","first_name":"Klaus-Robert"}],"title":"Adaptive Methods in BCI Research - An Introductory Tutorial","article_processing_charge":"No","acknowledgement":"This work was supported by the EU grants “BrainCom” (FP6-2004-Mobility-5 Grant No 024259) and “Multi-adaptive BCI” (MEIF-CT-2006 Grant No 040666). Furthermore, we thank Matthias Krauledat for fruitful discussions and tools for generating Fig. 5.","date_published":"2010-09-06T00:00:00Z","edition":"1","fulldoi":"https://doi.org/10.1007/978-3-642-02091-9_18","abstract":[{"lang":"eng","text":"This chapter tackles a difficult challenge: presenting signal processing material to non-experts. This chapter is meant to be comprehensible to people who have some math background, including a course in linear algebra and basic statistics, but do not specialize in mathematics, engineering, or related fields. Some formulas assume the reader is familiar with matrices and basic matrix operations, but not more advanced material. Furthermore, we tried to make the chapter readable even if you skip the formulas. Nevertheless, we include some simple methods to demonstrate the basics of adaptive data processing, then we proceed with some advanced methods that are fundamental in adaptive signal processing, and are likely to be useful in a variety of applications. The advanced algorithms are also online available [30]. In the second part, these techniques are applied to some real-world BCI data."}],"place":"Berlin, Heidelberg","day":"06","quality_controlled":"1","_id":"14983","doi":"10.1007/978-3-642-02091-9_18","publisher":"Springer","date_updated":"2024-10-21T06:03:06Z","date_created":"2024-02-14T09:56:00Z","citation":{"chicago":"Schlögl, Alois, Carmen Vidaurre, and Klaus-Robert Müller. “Adaptive Methods in BCI Research - An Introductory Tutorial.” In <i>Brain-Computer Interfaces</i>, edited by Bernhard Graimann, Gert Pfurtscheller, and Brendan Allison, 1st ed., 331–55. FRONTCOLL. Berlin, Heidelberg: Springer, 2010. <a href=\"https://doi.org/10.1007/978-3-642-02091-9_18\">https://doi.org/10.1007/978-3-642-02091-9_18</a>.","ieee":"A. Schlögl, C. Vidaurre, and K.-R. Müller, “Adaptive Methods in BCI Research - An Introductory Tutorial,” in <i>Brain-Computer Interfaces</i>, 1st ed., B. Graimann, G. Pfurtscheller, and B. Allison, Eds. Berlin, Heidelberg: Springer, 2010, pp. 331–355.","ista":"Schlögl A, Vidaurre C, Müller K-R. 2010.Adaptive Methods in BCI Research - An Introductory Tutorial. In: Brain-Computer Interfaces. The Frontiers Collection, , 331–355.","mla":"Schlögl, Alois, et al. “Adaptive Methods in BCI Research - An Introductory Tutorial.” <i>Brain-Computer Interfaces</i>, edited by Bernhard Graimann et al., 1st ed., Springer, 2010, pp. 331–55, doi:<a href=\"https://doi.org/10.1007/978-3-642-02091-9_18\">10.1007/978-3-642-02091-9_18</a>.","apa":"Schlögl, A., Vidaurre, C., &#38; Müller, K.-R. (2010). Adaptive Methods in BCI Research - An Introductory Tutorial. In B. Graimann, G. Pfurtscheller, &#38; B. Allison (Eds.), <i>Brain-Computer Interfaces</i> (1st ed., pp. 331–355). Berlin, Heidelberg: Springer. <a href=\"https://doi.org/10.1007/978-3-642-02091-9_18\">https://doi.org/10.1007/978-3-642-02091-9_18</a>","short":"A. Schlögl, C. Vidaurre, K.-R. Müller, in:, B. Graimann, G. Pfurtscheller, B. Allison (Eds.), Brain-Computer Interfaces, 1st ed., Springer, Berlin, Heidelberg, 2010, pp. 331–355.","ama":"Schlögl A, Vidaurre C, Müller K-R. Adaptive Methods in BCI Research - An Introductory Tutorial. In: Graimann B, Pfurtscheller G, Allison B, eds. <i>Brain-Computer Interfaces</i>. 1st ed. FRONTCOLL. Berlin, Heidelberg: Springer; 2010:331-355. doi:<a href=\"https://doi.org/10.1007/978-3-642-02091-9_18\">10.1007/978-3-642-02091-9_18</a>"},"year":"2010","series_title":"FRONTCOLL","corr_author":"1","type":"book_chapter","publication_identifier":{"eisbn":["9783642020919"],"issn":["1612-3018"],"isbn":["9783642020902"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","oa_version":"None","alternative_title":["The Frontiers Collection"],"month":"09"},{"_id":"1970","publisher":"Nature Publishing Group","doi":"10.1038/nature09066","month":"05","year":"2010","issue":"7297","fulldoi":"https://doi.org/10.1038/nature09066","extern":1,"quality_controlled":0,"day":"27","type":"journal_article","abstract":[{"lang":"eng","text":"Complex I is the first enzyme of the respiratory chain and has a central role in cellular energy production, coupling electron transfer between NADH and quinone to proton translocation by an unknown mechanism. Dysfunction of complex I has been implicated in many human neurodegenerative diseases. We have determined the structure of its hydrophilic domain previously. Here, we report the α-helical structure of the membrane domain of complex I from Escherichia coli at 3.9 Å resolution. The antiporter-like subunits NuoL/M/N each contain 14 conserved transmembrane (TM) helices. Two of them are discontinuous, as in some transporters. Unexpectedly, subunit NuoL also contains a 110-Å long amphipathic α-helix, spanning almost the entire length of the domain. Furthermore, we have determined the structure of the entire complex I from Thermus thermophilus at 4.5 Å resolution. The L-shaped assembly consists of the α-helical model for the membrane domain, with 63 TM helices, and the known structure of the hydrophilic domain. The architecture of the complex provides strong clues about the coupling mechanism: the conformational changes at the interface of the two main domains may drive the long amphipathic α-helix of NuoL in a piston-like motion, tilting nearby discontinuous TM helices, resulting in proton translocation."}],"acknowledgement":"This work was funded by the Medical Research Council.","publist_id":"5113","intvolume":"       465","date_created":"2018-12-11T11:54:58Z","title":"The architecture of respiratory complex I","publication_status":"published","author":[{"full_name":"Efremov, Rouslan G","last_name":"Efremov","first_name":"Rouslan"},{"first_name":"Rozbeh","last_name":"Baradaran","full_name":"Baradaran, Rozbeh "},{"full_name":"Leonid Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0977-7989","last_name":"Sazanov","first_name":"Leonid A"}],"citation":{"ieee":"R. Efremov, R. Baradaran, and L. A. Sazanov, “The architecture of respiratory complex I,” <i>Nature</i>, vol. 465, no. 7297. Nature Publishing Group, pp. 441–445, 2010.","chicago":"Efremov, Rouslan, Rozbeh Baradaran, and Leonid A Sazanov. “The Architecture of Respiratory Complex I.” <i>Nature</i>. Nature Publishing Group, 2010. <a href=\"https://doi.org/10.1038/nature09066\">https://doi.org/10.1038/nature09066</a>.","short":"R. Efremov, R. Baradaran, L.A. Sazanov, Nature 465 (2010) 441–445.","ama":"Efremov R, Baradaran R, Sazanov LA. The architecture of respiratory complex I. <i>Nature</i>. 2010;465(7297):441-445. doi:<a href=\"https://doi.org/10.1038/nature09066\">10.1038/nature09066</a>","mla":"Efremov, Rouslan, et al. “The Architecture of Respiratory Complex I.” <i>Nature</i>, vol. 465, no. 7297, Nature Publishing Group, 2010, pp. 441–45, doi:<a href=\"https://doi.org/10.1038/nature09066\">10.1038/nature09066</a>.","apa":"Efremov, R., Baradaran, R., &#38; Sazanov, L. A. (2010). The architecture of respiratory complex I. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature09066\">https://doi.org/10.1038/nature09066</a>","ista":"Efremov R, Baradaran R, Sazanov LA. 2010. The architecture of respiratory complex I. Nature. 465(7297), 441–445."},"date_published":"2010-05-27T00:00:00Z","volume":465,"page":"441 - 445","status":"public","date_updated":"2021-01-12T06:54:25Z","publication":"Nature"},{"year":"2010","series_title":"Bibliothekspraxis","extern":"1","publication_identifier":{"eisbn":["9-783-1102-3210-3"],"isbn":["9-783-1102-3209-7"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"book_editor","main_file_link":[{"open_access":"1","url":"https://www.degruyter.com/document/doi/10.1515/9783110232103/html"}],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)"},"oa_version":"Published Version","alternative_title":["Bibliotheks- und Informationspraxis"],"month":"09","date_updated":"2025-07-02T11:25:26Z","date_created":"2018-12-11T12:08:23Z","oa":1,"citation":{"ieee":"P. Danowski and J. Bergmann, Eds., <i>Handbuch Bibliothek 2.0</i>, vol. 41. De Gruyter, 2010.","chicago":"Danowski, Patrick, and Julia Bergmann, eds. <i>Handbuch Bibliothek 2.0</i>. Vol. 41. Bibliothekspraxis. De Gruyter, 2010. <a href=\"https://doi.org/10.1515/9783110232103\">https://doi.org/10.1515/9783110232103</a>.","short":"P. Danowski, J. Bergmann, eds., Handbuch Bibliothek 2.0, De Gruyter, 2010.","ama":"Danowski P, Bergmann J, eds. <i>Handbuch Bibliothek 2.0</i>. Vol 41. De Gruyter; 2010. doi:<a href=\"https://doi.org/10.1515/9783110232103\">10.1515/9783110232103</a>","ista":"Danowski P, Bergmann J eds. 2010. Handbuch Bibliothek 2.0, De Gruyter, 405p.","apa":"Danowski, P., &#38; Bergmann, J. (Eds.). (2010). <i>Handbuch Bibliothek 2.0</i> (Vol. 41). De Gruyter. <a href=\"https://doi.org/10.1515/9783110232103\">https://doi.org/10.1515/9783110232103</a>","mla":"Danowski, Patrick, and Julia Bergmann, editors. <i>Handbuch Bibliothek 2.0</i>. Vol. 41, De Gruyter, 2010, doi:<a href=\"https://doi.org/10.1515/9783110232103\">10.1515/9783110232103</a>."},"fulldoi":"https://doi.org/10.1515/9783110232103","quality_controlled":"1","abstract":[{"text":"With the term \"Library 2.0\" the editors mean an institution which applies the principles of the Web 2.0 such as openness, re-use, collaboration and interaction in the entire organization. Libraries are extending their service offerings and work processes to include the potential of Web 2.0 technologies. This changes the job description and self-image of librarians. The collective volume offers a complete overview of the topic Library 2.0 and the current state of developments from a technological, sociological, information theoretical and practice-oriented perspective.","lang":"eng"}],"day":"01","_id":"4346","doi":"10.1515/9783110232103","publisher":"De Gruyter","status":"public","page":"405","editor":[{"id":"2EBD1598-F248-11E8-B48F-1D18A9856A87","full_name":"Danowski, Patrick","last_name":"Danowski","orcid":"0000-0002-6026-4409","first_name":"Patrick"},{"first_name":"Julia","full_name":"Bergmann, Julia","last_name":"Bergmann"}],"language":[{"iso":"ger"}],"title":"Handbuch Bibliothek 2.0","publist_id":"1228","article_processing_charge":"No","publication_status":"published","volume":" 41","date_published":"2010-09-01T00:00:00Z"},{"date_updated":"2021-01-12T07:56:23Z","page":"454 - 466","status":"public","publication":"Genome Biology and Evolution","author":[{"full_name":"Guinane, Caitriona M","last_name":"Guinane","first_name":"Caitriona"},{"first_name":"Nouri","last_name":"Ben Zakour","full_name":"Ben Zakour, Nouri L"},{"full_name":"Tormo-Mas, Maria A","last_name":"Tormo Mas","first_name":"Maria"},{"first_name":"Lucy","last_name":"Weinert","full_name":"Weinert, Lucy A"},{"last_name":"Lowder","full_name":"Lowder, Bethan V","first_name":"Bethan"},{"full_name":"Cartwright, Robyn A","last_name":"Cartwright","first_name":"Robyn"},{"full_name":"Smyth, Davida S","last_name":"Smyth","first_name":"Davida"},{"first_name":"Cyril","full_name":"Smyth, Cyril J","last_name":"Smyth"},{"first_name":"Jodi","full_name":"Lindsay, Jodi A","last_name":"Lindsay"},{"first_name":"Katherine","last_name":"Gould","full_name":"Gould, Katherine A"},{"last_name":"Witney","full_name":"Witney, Adam","first_name":"Adam"},{"full_name":"Hinds, Jason","last_name":"Hinds","first_name":"Jason"},{"first_name":"Jonathan P","full_name":"Jonathan Bollback","orcid":"0000-0002-4624-4612","id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87","last_name":"Bollback"},{"full_name":"Rambaut, Andrew","last_name":"Rambaut","first_name":"Andrew"},{"first_name":"Jose","full_name":"Penades, Jose R","last_name":"Penades"},{"last_name":"Fitzgerald","full_name":"Fitzgerald, J Ross","first_name":"J Ross"}],"publication_status":"published","publist_id":"1100","intvolume":"         2","title":"Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation","date_created":"2018-12-11T12:08:27Z","citation":{"short":"C. Guinane, N. Ben Zakour, M. Tormo Mas, L. Weinert, B. Lowder, R. Cartwright, D. Smyth, C. Smyth, J. Lindsay, K. Gould, A. Witney, J. Hinds, J.P. Bollback, A. Rambaut, J. Penades, J.R. Fitzgerald, Genome Biology and Evolution 2 (2010) 454–466.","ama":"Guinane C, Ben Zakour N, Tormo Mas M, et al. Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation. <i>Genome Biology and Evolution</i>. 2010;2:454-466. doi:<a href=\"https://doi.org/10.1093/gbe/evq031\">10.1093/gbe/evq031</a>","ista":"Guinane C, Ben Zakour N, Tormo Mas M, Weinert L, Lowder B, Cartwright R, Smyth D, Smyth C, Lindsay J, Gould K, Witney A, Hinds J, Bollback JP, Rambaut A, Penades J, Fitzgerald JR. 2010. Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation. Genome Biology and Evolution. 2, 454–466.","apa":"Guinane, C., Ben Zakour, N., Tormo Mas, M., Weinert, L., Lowder, B., Cartwright, R., … Fitzgerald, J. R. (2010). Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation. <i>Genome Biology and Evolution</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/gbe/evq031\">https://doi.org/10.1093/gbe/evq031</a>","mla":"Guinane, Caitriona, et al. “Evolutionary Genomics of Staphylococcus Aureus Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation.” <i>Genome Biology and Evolution</i>, vol. 2, Oxford University Press, 2010, pp. 454–66, doi:<a href=\"https://doi.org/10.1093/gbe/evq031\">10.1093/gbe/evq031</a>.","ieee":"C. Guinane <i>et al.</i>, “Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation,” <i>Genome Biology and Evolution</i>, vol. 2. Oxford University Press, pp. 454–466, 2010.","chicago":"Guinane, Caitriona, Nouri Ben Zakour, Maria Tormo Mas, Lucy Weinert, Bethan Lowder, Robyn Cartwright, Davida Smyth, et al. “Evolutionary Genomics of Staphylococcus Aureus Reveals Insights into the Origin and Molecular Basis of Ruminant Host Adaptation.” <i>Genome Biology and Evolution</i>. Oxford University Press, 2010. <a href=\"https://doi.org/10.1093/gbe/evq031\">https://doi.org/10.1093/gbe/evq031</a>."},"date_published":"2010-06-09T00:00:00Z","volume":2,"fulldoi":"https://doi.org/10.1093/gbe/evq031","extern":1,"year":"2010","day":"09","abstract":[{"lang":"eng","text":"Phenotypic biotyping has traditionally been used to differentiate bacteria occupying distinct ecological niches such as host species. For example, the capacity of Staphylococcus aureus from sheep to coagulate ruminant plasma, reported over 60 years ago, led to the description of small ruminant and bovine S. aureus ecovars. The great majority of small ruminant isolates are represented by a single, widespread clonal complex (CC133) of S. aureus, but its evolutionary origin and the molecular basis for its host tropism remain unknown. Here, we provide evidence that the CC133 clone evolved as the result of a human to ruminant host jump followed by adaptive genome diversification. Comparative whole-genome sequencing revealed molecular evidence for host adaptation including gene decay and diversification of proteins involved in host-pathogen interactions. Importantly, several novel mobile genetic elements encoding virulence proteins with attenuated or enhanced activity in ruminants were widely distributed in CC133 isolates, suggesting a key role in its host-specific interactions. To investigate this further, we examined the activity of a novel staphylococcal pathogenicity island (SaPIov2) found in the great majority of CC133 isolates which encodes a variant of the chromosomally encoded von Willebrand-binding protein (vWbp(Sov2)), previously demonstrated to have coagulase activity for human plasma. Remarkably, we discovered that SaPIov2 confers the ability to coagulate ruminant plasma suggesting an important role in ruminant disease pathogenesis and revealing the origin of a defining phenotype of the classical S. aureus biotyping scheme. Taken together, these data provide broad new insights into the origin and molecular basis of S. aureus ruminant host specificity."}],"type":"journal_article","quality_controlled":0,"_id":"4358","month":"06","publisher":"Oxford University Press","doi":"10.1093/gbe/evq031"},{"publist_id":"1099","intvolume":"      6014","title":"Forward analysis of depth-bounded processes","author":[{"id":"447BFB88-F248-11E8-B48F-1D18A9856A87","last_name":"Wies","full_name":"Wies, Thomas","first_name":"Thomas"},{"first_name":"Damien","orcid":"0000-0002-3197-8736","last_name":"Zufferey","full_name":"Zufferey, Damien","id":"4397AC76-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Thomas A","last_name":"Henzinger","full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000−0002−2985−7724"}],"publication_status":"published","volume":6014,"date_published":"2010-03-01T00:00:00Z","status":"public","page":"94 - 108","department":[{"_id":"ToHe"}],"editor":[{"first_name":"Luke","full_name":"Ong, Luke","last_name":"Ong"}],"language":[{"iso":"eng"}],"related_material":{"record":[{"relation":"dissertation_contains","id":"1405","status":"public"}]},"_id":"4361","publisher":"Springer","doi":"10.1007/978-3-642-12032-9_8","file_date_updated":"2020-07-14T12:46:27Z","fulldoi":"https://doi.org/10.1007/978-3-642-12032-9_8","has_accepted_license":"1","conference":{"name":"FoSSaCS: Foundations of Software Science and Computation Structures","start_date":"2010-03-20","end_date":"2010-03-28","location":"Paphos, Cyprus"},"quality_controlled":"1","day":"01","abstract":[{"text":"Depth-bounded processes form the most expressive known fragment of the π-calculus for which interesting verification problems are still decidable. In this paper we develop an adequate domain of limits for the well-structured transition systems that are induced by depth-bounded processes. An immediate consequence of our result is that there exists a forward algorithm that decides the covering problem for this class. Unlike backward algorithms, the forward algorithm terminates even if the depth of the process is not known a priori. More importantly, our result suggests a whole spectrum of forward algorithms that enable the effective verification of a large class of mobile systems.","lang":"eng"}],"file":[{"relation":"main_file","file_name":"IST-2012-50-v1+1_Forward_analysis_of_depth-bounded_processes.pdf","file_id":"4677","date_updated":"2020-07-14T12:46:27Z","creator":"system","checksum":"3e610de84937d821316362658239134a","access_level":"open_access","file_size":240766,"content_type":"application/pdf","date_created":"2018-12-12T10:08:17Z"}],"date_created":"2018-12-11T12:08:27Z","citation":{"chicago":"Wies, Thomas, Damien Zufferey, and Thomas A Henzinger. “Forward Analysis of Depth-Bounded Processes.” edited by Luke Ong, 6014:94–108. Springer, 2010. <a href=\"https://doi.org/10.1007/978-3-642-12032-9_8\">https://doi.org/10.1007/978-3-642-12032-9_8</a>.","ieee":"T. Wies, D. Zufferey, and T. A. Henzinger, “Forward analysis of depth-bounded processes,” presented at the FoSSaCS: Foundations of Software Science and Computation Structures, Paphos, Cyprus, 2010, vol. 6014, pp. 94–108.","ista":"Wies T, Zufferey D, Henzinger TA. 2010. Forward analysis of depth-bounded processes. FoSSaCS: Foundations of Software Science and Computation Structures, LNCS, vol. 6014, 94–108.","apa":"Wies, T., Zufferey, D., &#38; Henzinger, T. A. (2010). Forward analysis of depth-bounded processes. In L. Ong (Ed.) (Vol. 6014, pp. 94–108). Presented at the FoSSaCS: Foundations of Software Science and Computation Structures, Paphos, Cyprus: Springer. <a href=\"https://doi.org/10.1007/978-3-642-12032-9_8\">https://doi.org/10.1007/978-3-642-12032-9_8</a>","mla":"Wies, Thomas, et al. <i>Forward Analysis of Depth-Bounded Processes</i>. Edited by Luke Ong, vol. 6014, Springer, 2010, pp. 94–108, doi:<a href=\"https://doi.org/10.1007/978-3-642-12032-9_8\">10.1007/978-3-642-12032-9_8</a>.","ama":"Wies T, Zufferey D, Henzinger TA. Forward analysis of depth-bounded processes. In: Ong L, ed. Vol 6014. Springer; 2010:94-108. doi:<a href=\"https://doi.org/10.1007/978-3-642-12032-9_8\">10.1007/978-3-642-12032-9_8</a>","short":"T. Wies, D. Zufferey, T.A. Henzinger, in:, L. Ong (Ed.), Springer, 2010, pp. 94–108."},"oa":1,"date_updated":"2026-04-09T14:35:23Z","ddc":["004"],"alternative_title":["LNCS"],"oa_version":"Submitted Version","pubrep_id":"50","scopus_import":1,"month":"03","year":"2010","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","type":"conference","corr_author":"1"},{"alternative_title":["LNCS"],"oa_version":"None","scopus_import":1,"month":"01","year":"2010","corr_author":"1","type":"conference","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","date_created":"2018-12-11T12:08:28Z","citation":{"ista":"Singh V. 2010. Runtime verification for software transactional memories. RV: International Conference on Runtime Verification, LNCS, vol. 6418, 421–435.","mla":"Singh, Vasu. <i>Runtime Verification for Software Transactional Memories</i>. Edited by Oleg Sokolsky et al., vol. 6418, Springer, 2010, pp. 421–35, doi:<a href=\"https://doi.org/10.1007/978-3-642-16612-9_32\">10.1007/978-3-642-16612-9_32</a>.","apa":"Singh, V. (2010). Runtime verification for software transactional memories. In O. Sokolsky, G. Rosu, N. Tilmann, H. Barringer, Y. Falcone, B. Finkbeiner, … G. Pace (Eds.) (Vol. 6418, pp. 421–435). Presented at the RV: International Conference on Runtime Verification, St. Julians, Malta: Springer. <a href=\"https://doi.org/10.1007/978-3-642-16612-9_32\">https://doi.org/10.1007/978-3-642-16612-9_32</a>","short":"V. Singh, in:, O. Sokolsky, G. Rosu, N. Tilmann, H. Barringer, Y. Falcone, B. Finkbeiner, K. Havelund, I. Lee, G. Pace (Eds.), Springer, 2010, pp. 421–435.","ama":"Singh V. Runtime verification for software transactional memories. In: Sokolsky O, Rosu G, Tilmann N, et al., eds. Vol 6418. Springer; 2010:421-435. doi:<a href=\"https://doi.org/10.1007/978-3-642-16612-9_32\">10.1007/978-3-642-16612-9_32</a>","chicago":"Singh, Vasu. “Runtime Verification for Software Transactional Memories.” edited by Oleg Sokolsky, Grigore Rosu, Nikolai Tilmann, Howard Barringer, Ylies Falcone, Bernd Finkbeiner, Klaus Havelund, Insup Lee, and Gordon Pace, 6418:421–35. Springer, 2010. <a href=\"https://doi.org/10.1007/978-3-642-16612-9_32\">https://doi.org/10.1007/978-3-642-16612-9_32</a>.","ieee":"V. Singh, “Runtime verification for software transactional memories,” presented at the RV: International Conference on Runtime Verification, St. Julians, Malta, 2010, vol. 6418, pp. 421–435."},"date_updated":"2024-10-09T20:54:01Z","_id":"4362","publisher":"Springer","doi":"10.1007/978-3-642-16612-9_32","fulldoi":"https://doi.org/10.1007/978-3-642-16612-9_32","conference":{"location":"St. Julians, Malta","name":"RV: International Conference on Runtime Verification","start_date":"2010-11-01","end_date":"2010-11-04"},"day":"01","abstract":[{"lang":"eng","text":"Software transactional memories (STMs) promise simple and efficient concurrent programming. Several correctness properties have been proposed for STMs. Based on a bounded conflict graph algorithm for verifying correctness of STMs, we develop TRACER, a tool for runtime verification of STM implementations. The novelty of TRACER lies in the way it combines coarse and precise runtime analyses to guarantee sound and complete verification in an efficient manner. We implement TRACER in the TL2 STM implementation. We evaluate the performance of TRACER on STAMP benchmarks. While a precise runtime verification technique based on conflict graphs results in an average slowdown of 60x, the two-level approach of TRACER performs complete verification with an average slowdown of around 25x across different benchmarks."}],"quality_controlled":"1","publication_status":"published","author":[{"last_name":"Singh","id":"4DAE2708-F248-11E8-B48F-1D18A9856A87","full_name":"Singh, Vasu","first_name":"Vasu"}],"publist_id":"1096","title":"Runtime verification for software transactional memories","intvolume":"      6418","date_published":"2010-01-01T00:00:00Z","volume":6418,"department":[{"_id":"ToHe"}],"editor":[{"first_name":"Oleg","last_name":"Sokolsky","full_name":"Sokolsky, Oleg"},{"full_name":"Rosu, Grigore","last_name":"Rosu","first_name":"Grigore"},{"full_name":"Tilmann, Nikolai","last_name":"Tilmann","first_name":"Nikolai"},{"last_name":"Barringer","full_name":"Barringer, Howard","first_name":"Howard"},{"first_name":"Ylies","full_name":"Falcone, Ylies","last_name":"Falcone"},{"last_name":"Finkbeiner","full_name":"Finkbeiner, Bernd","first_name":"Bernd"},{"full_name":"Havelund, Klaus","last_name":"Havelund","first_name":"Klaus"},{"last_name":"Lee","full_name":"Lee, Insup","first_name":"Insup"},{"last_name":"Pace","full_name":"Pace, Gordon","first_name":"Gordon"}],"page":"421 - 435","status":"public","language":[{"iso":"eng"}]},{"_id":"4364","month":"01","doi":"10.1145/1707801.1706330","publisher":"ACM","conference":{"name":"POPL: Principles of Programming Languages"},"fulldoi":"https://doi.org/10.1145/1707801.1706330","extern":1,"year":"2010","type":"conference","day":"01","quality_controlled":0,"publication_status":"published","author":[{"full_name":"Podelski,Andreas","last_name":"Podelski","first_name":"Andreas"},{"full_name":"Thomas Wies","id":"447BFB88-F248-11E8-B48F-1D18A9856A87","last_name":"Wies","first_name":"Thomas"}],"title":"Counterexample-guided focus","date_created":"2018-12-11T12:08:28Z","publist_id":"1093","date_published":"2010-01-01T00:00:00Z","citation":{"apa":"Podelski, A., &#38; Wies, T. (2010). Counterexample-guided focus (pp. 249–260). Presented at the POPL: Principles of Programming Languages, ACM. <a href=\"https://doi.org/10.1145/1707801.1706330\">https://doi.org/10.1145/1707801.1706330</a>","mla":"Podelski, Andreas, and Thomas Wies. <i>Counterexample-Guided Focus</i>. ACM, 2010, pp. 249–60, doi:<a href=\"https://doi.org/10.1145/1707801.1706330\">10.1145/1707801.1706330</a>.","ista":"Podelski A, Wies T. 2010. Counterexample-guided focus. POPL: Principles of Programming Languages, 249–260.","short":"A. Podelski, T. Wies, in:, ACM, 2010, pp. 249–260.","ama":"Podelski A, Wies T. Counterexample-guided focus. In: ACM; 2010:249-260. doi:<a href=\"https://doi.org/10.1145/1707801.1706330\">10.1145/1707801.1706330</a>","chicago":"Podelski, Andreas, and Thomas Wies. “Counterexample-Guided Focus,” 249–60. ACM, 2010. <a href=\"https://doi.org/10.1145/1707801.1706330\">https://doi.org/10.1145/1707801.1706330</a>.","ieee":"A. Podelski and T. Wies, “Counterexample-guided focus,” presented at the POPL: Principles of Programming Languages, 2010, pp. 249–260."},"page":"249 - 260","status":"public","date_updated":"2021-01-12T07:56:26Z"},{"year":"2010","project":[{"_id":"25EFB36C-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"COMponent-Based Embedded Systems design Techniques","grant_number":"215543"},{"call_identifier":"FP7","grant_number":"214373","name":"Design for Embedded Systems","_id":"25F1337C-B435-11E9-9278-68D0E5697425"}],"user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","corr_author":"1","type":"conference","oa_version":"Submitted Version","alternative_title":["LNCS"],"scopus_import":1,"pubrep_id":"49","month":"09","date_updated":"2024-10-09T20:54:01Z","ddc":["004"],"file":[{"date_updated":"2020-07-14T12:46:27Z","file_id":"5028","file_name":"IST-2012-49-v1+1_From_MTL_to_deterministic_timed_automata.pdf","relation":"main_file","date_created":"2018-12-12T10:13:43Z","file_size":249789,"content_type":"application/pdf","access_level":"open_access","checksum":"b0ca5f5fbe8a3d20ccbc6f51a344a459","creator":"system"}],"date_created":"2018-12-11T12:08:30Z","citation":{"chicago":"Nickovic, Dejan, and Nir Piterman. “From MTL to Deterministic Timed Automata.” edited by Thomas A. Henzinger and Krishnendu Chatterjee, 6246:152–67. Springer, 2010. <a href=\"https://doi.org/10.1007/978-3-642-15297-9_13\">https://doi.org/10.1007/978-3-642-15297-9_13</a>.","ieee":"D. Nickovic and N. Piterman, “From MTL to deterministic timed automata,” presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, Klosterneuburg, Austria, 2010, vol. 6246, pp. 152–167.","ista":"Nickovic D, Piterman N. 2010. From MTL to deterministic timed automata. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 6246, 152–167.","mla":"Nickovic, Dejan, and Nir Piterman. <i>From MTL to Deterministic Timed Automata</i>. Edited by Thomas A. Henzinger and Krishnendu Chatterjee, vol. 6246, Springer, 2010, pp. 152–67, doi:<a href=\"https://doi.org/10.1007/978-3-642-15297-9_13\">10.1007/978-3-642-15297-9_13</a>.","apa":"Nickovic, D., &#38; Piterman, N. (2010). From MTL to deterministic timed automata. In T. A. Henzinger &#38; K. Chatterjee (Eds.) (Vol. 6246, pp. 152–167). Presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, Klosterneuburg, Austria: Springer. <a href=\"https://doi.org/10.1007/978-3-642-15297-9_13\">https://doi.org/10.1007/978-3-642-15297-9_13</a>","short":"D. Nickovic, N. Piterman, in:, T.A. Henzinger, K. Chatterjee (Eds.), Springer, 2010, pp. 152–167.","ama":"Nickovic D, Piterman N. From MTL to deterministic timed automata. In: Henzinger TA, Chatterjee K, eds. Vol 6246. Springer; 2010:152-167. doi:<a href=\"https://doi.org/10.1007/978-3-642-15297-9_13\">10.1007/978-3-642-15297-9_13</a>"},"oa":1,"has_accepted_license":"1","fulldoi":"https://doi.org/10.1007/978-3-642-15297-9_13","conference":{"location":"Klosterneuburg, Austria","end_date":"2010-09-10","name":"FORMATS: Formal Modeling and Analysis of Timed Systems","start_date":"2010-09-08"},"quality_controlled":"1","day":"08","abstract":[{"lang":"eng","text":"In this paper we propose a novel technique for constructing timed automata from properties expressed in the logic mtl, under bounded-variability assumptions. We handle full mtl and include all future operators. Our construction is based on separation of the continuous time monitoring of the input sequence and discrete predictions regarding the future. The separation of the continuous from the discrete allows us to determinize our automata in an exponential construction that does not increase the number of clocks. This leads to a doubly exponential construction from mtl to deterministic timed automata, compared with triply exponential using existing approaches. We offer an alternative to the existing approach to linear real-time model checking, which has never been implemented. It further offers a unified framework for model checking, runtime monitoring, and synthesis, in an approach that can reuse tools, implementations, and insights from the discrete setting."}],"_id":"4369","publisher":"Springer","doi":"10.1007/978-3-642-15297-9_13","file_date_updated":"2020-07-14T12:46:27Z","page":"152 - 167","status":"public","department":[{"_id":"ToHe"}],"editor":[{"last_name":"Henzinger","full_name":"Henzinger, Thomas A.","first_name":"Thomas A."},{"last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu"}],"ec_funded":1,"language":[{"iso":"eng"}],"publist_id":"1090","intvolume":"      6246","title":"From MTL to deterministic timed automata","publication_status":"published","author":[{"last_name":"Nickovic","full_name":"Nickovic, Dejan","id":"41BCEE5C-F248-11E8-B48F-1D18A9856A87","first_name":"Dejan"},{"last_name":"Piterman","full_name":"Piterman, Nir","first_name":"Nir"}],"volume":6246,"date_published":"2010-09-08T00:00:00Z"},{"user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","type":"conference","year":"2010","month":"01","main_file_link":[{"open_access":"1","url":"https://infoscience.epfl.ch/record/161290/"}],"scopus_import":1,"oa_version":"Submitted Version","alternative_title":["LNCS"],"date_updated":"2021-01-12T07:56:31Z","oa":1,"citation":{"ieee":"V. Kuncak, R. Piskac, P. Suter, and T. Wies, “Building a calculus of data structures,” presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, Madrid, Spain, 2010, vol. 5944, pp. 26–44.","chicago":"Kuncak, Viktor, Ruzica Piskac, Philippe Suter, and Thomas Wies. “Building a Calculus of Data Structures.” edited by Gilles Barthe and Manuel Hermenegildo, 5944:26–44. Springer, 2010. <a href=\"https://doi.org/10.1007/978-3-642-11319-2_6\">https://doi.org/10.1007/978-3-642-11319-2_6</a>.","short":"V. Kuncak, R. Piskac, P. Suter, T. Wies, in:, G. Barthe, M. Hermenegildo (Eds.), Springer, 2010, pp. 26–44.","ama":"Kuncak V, Piskac R, Suter P, Wies T. Building a calculus of data structures. In: Barthe G, Hermenegildo M, eds. Vol 5944. Springer; 2010:26-44. doi:<a href=\"https://doi.org/10.1007/978-3-642-11319-2_6\">10.1007/978-3-642-11319-2_6</a>","ista":"Kuncak V, Piskac R, Suter P, Wies T. 2010. Building a calculus of data structures. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944, 26–44.","mla":"Kuncak, Viktor, et al. <i>Building a Calculus of Data Structures</i>. Edited by Gilles Barthe and Manuel Hermenegildo, vol. 5944, Springer, 2010, pp. 26–44, doi:<a href=\"https://doi.org/10.1007/978-3-642-11319-2_6\">10.1007/978-3-642-11319-2_6</a>.","apa":"Kuncak, V., Piskac, R., Suter, P., &#38; Wies, T. (2010). Building a calculus of data structures. In G. Barthe &#38; M. Hermenegildo (Eds.) (Vol. 5944, pp. 26–44). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, Madrid, Spain: Springer. <a href=\"https://doi.org/10.1007/978-3-642-11319-2_6\">https://doi.org/10.1007/978-3-642-11319-2_6</a>"},"date_created":"2018-12-11T12:08:33Z","quality_controlled":"1","abstract":[{"text":"Techniques such as verification condition generation, predicate abstraction, and expressive type systems reduce software verification to proving formulas in expressive logics. Programs and their specifications often make use of data structures such as sets, multisets, algebraic data types, or graphs. Consequently, formulas generated from verification also involve such data structures. To automate the proofs of such formulas we propose a logic (a “calculus”) of such data structures. We build the calculus by starting from decidable logics of individual data structures, and connecting them through functions and sets, in ways that go beyond the frameworks such as Nelson-Oppen. The result are new decidable logics that can simultaneously specify properties of different kinds of data structures and overcome the limitations of the individual logics. Several of our decidable logics include abstraction functions that map a data structure into its more abstract view (a tree into a multiset, a multiset into a set), into a numerical quantity (the size or the height), or into the truth value of a candidate data structure invariant (sortedness, or the heap property). For algebraic data types, we identify an asymptotic many-to-one condition on the abstraction function that guarantees the existence of a decision procedure. In addition to the combination based on abstraction functions, we can combine multiple data structure theories if they all reduce to the same data structure logic. As an instance of this approach, we describe a decidable logic whose formulas are propositional combinations of formulas in: weak monadic second-order logic of two successors, two-variable logic with counting, multiset algebra with Presburger arithmetic, the Bernays-Schönfinkel-Ramsey class of first-order logic, and the logic of algebraic data types with the set content function. The subformulas in this combination can share common variables that refer to sets of objects along with the common set algebra operations. Such sound and complete combination is possible because the relations on sets definable in the component logics are all expressible in Boolean Algebra with Presburger Arithmetic. Presburger arithmetic and its new extensions play an important role in our decidability results. In several cases, when we combine logics that belong to NP, we can prove the satisfiability for the combined logic is still in NP.","lang":"eng"}],"day":"01","conference":{"start_date":"2010-01-17","name":"VMCAI: Verification, Model Checking and Abstract Interpretation","end_date":"2010-01-19","location":"Madrid, Spain"},"fulldoi":"https://doi.org/10.1007/978-3-642-11319-2_6","doi":"10.1007/978-3-642-11319-2_6","publisher":"Springer","_id":"4378","language":[{"iso":"eng"}],"page":"26 - 44","status":"public","department":[{"_id":"ToHe"}],"editor":[{"first_name":"Gilles","full_name":"Barthe, Gilles","last_name":"Barthe"},{"first_name":"Manuel","full_name":"Hermenegildo, Manuel","last_name":"Hermenegildo"}],"volume":5944,"date_published":"2010-01-01T00:00:00Z","intvolume":"      5944","title":"Building a calculus of data structures","publist_id":"1081","publication_status":"published","author":[{"last_name":"Kuncak","full_name":"Kuncak, Viktor","first_name":"Viktor"},{"first_name":"Ruzica","full_name":"Piskac, Ruzica","last_name":"Piskac"},{"first_name":"Philippe","full_name":"Suter, Philippe","last_name":"Suter"},{"first_name":"Thomas","last_name":"Wies","id":"447BFB88-F248-11E8-B48F-1D18A9856A87","full_name":"Wies, Thomas"}]},{"month":"06","doi":"10.1007/s10703-009-0085-x","publisher":"Springer","_id":"4379","main_file_link":[{"url":"http://openaccess.city.ac.uk/1066/","open_access":"1"}],"abstract":[{"lang":"eng","text":"The formal specification component of verification can be exported to simulation through the idea of property checkers. The essence of this approach is the automatic construction of an observer from the specification in the form of a program that can be interfaced with a simulator and alert the user if the property is violated by a simulation trace. Although not complete, this lighter approach to formal verification has been effectively used in software and digital hardware to detect errors. Recently, the idea of property checkers has been extended to analog and mixed-signal systems.\n\nIn this paper, we apply the property-based checking methodology to an industrial and realistic example of a DDR2 memory interface. The properties describing the DDR2 analog behavior are expressed in the formal specification language stl/psl in form of assertions. The simulation traces generated from an actual DDR2 interface design are checked with respect to the stl/psl assertions using the amt tool. The focus of this paper is on the translation of the official (informal and descriptive) specification of two non-trivial DDR2 properties into stl/psl assertions. We study both the benefits and the current limits of such approach.\n"}],"type":"journal_article","day":"01","quality_controlled":0,"fulldoi":"https://doi.org/10.1007/s10703-009-0085-x","extern":1,"issue":"2","year":"2010","date_published":"2010-06-01T00:00:00Z","volume":36,"oa":1,"citation":{"ieee":"K. Jones, V. Konrad, and D. Nickovic, “Analog property checkers: a DDR2 case study,” <i>Formal Methods in System Design</i>, vol. 36, no. 2. Springer, pp. 114–130, 2010.","chicago":"Jones, Kevin, Victor Konrad, and Dejan Nickovic. “Analog Property Checkers: A DDR2 Case Study.” <i>Formal Methods in System Design</i>. Springer, 2010. <a href=\"https://doi.org/10.1007/s10703-009-0085-x\">https://doi.org/10.1007/s10703-009-0085-x</a>.","short":"K. Jones, V. Konrad, D. Nickovic, Formal Methods in System Design 36 (2010) 114–130.","ama":"Jones K, Konrad V, Nickovic D. Analog property checkers: a DDR2 case study. <i>Formal Methods in System Design</i>. 2010;36(2):114-130. doi:<a href=\"https://doi.org/10.1007/s10703-009-0085-x\">10.1007/s10703-009-0085-x</a>","apa":"Jones, K., Konrad, V., &#38; Nickovic, D. (2010). Analog property checkers: a DDR2 case study. <i>Formal Methods in System Design</i>. Springer. <a href=\"https://doi.org/10.1007/s10703-009-0085-x\">https://doi.org/10.1007/s10703-009-0085-x</a>","mla":"Jones, Kevin, et al. “Analog Property Checkers: A DDR2 Case Study.” <i>Formal Methods in System Design</i>, vol. 36, no. 2, Springer, 2010, pp. 114–30, doi:<a href=\"https://doi.org/10.1007/s10703-009-0085-x\">10.1007/s10703-009-0085-x</a>.","ista":"Jones K, Konrad V, Nickovic D. 2010. Analog property checkers: a DDR2 case study. Formal Methods in System Design. 36(2), 114–130."},"author":[{"first_name":"Kevin","last_name":"Jones","full_name":"Jones, Kevin D"},{"first_name":"Victor","full_name":"Konrad,Victor","last_name":"Konrad"},{"first_name":"Dejan","id":"41BCEE5C-F248-11E8-B48F-1D18A9856A87","full_name":"Dejan Nickovic","last_name":"Nickovic"}],"publication_status":"published","title":"Analog property checkers: a DDR2 case study","date_created":"2018-12-11T12:08:33Z","intvolume":"        36","publist_id":"1080","acknowledgement":"We would like to thank Tom Giovannini from Rambus, Inc. for his detailed explana- tions of the DDR2 specification and for providing us with simulation traces. We would also like to thank Oded Maler from Verimag for discussions on the STL/PSL language and its extensions.","publication":"Formal Methods in System Design","page":"114 - 130","status":"public","date_updated":"2021-01-12T07:56:31Z"}]