[{"quality_controlled":0,"_id":"3078","title":"Immunolocalization of proteins in plants ","publication":"Plant Developmental Biology","date_created":"2018-12-11T12:01:14Z","author":[{"first_name":"Michael","full_name":"Sauer, Michael","last_name":"Sauer"},{"first_name":"Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","full_name":"Jirí Friml","last_name":"Friml"}],"status":"public","month":"08","publication_status":"published","fulldoi":"https://doi.org/10.1007/978-1-60761-765-5_17","day":"12","doi":"10.1007/978-1-60761-765-5_17","editor":[{"full_name":"Hennig, Lars","first_name":"Lars","last_name":"Hennig"},{"last_name":"Köhler","first_name":"Claudia","full_name":"Köhler, Claudia"}],"alternative_title":["Methods in Molecular Biology"],"publist_id":"3623","year":"2010","type":"book_chapter","date_published":"2010-08-12T00:00:00Z","publisher":"Humana Press","page":"253 - 263","volume":655,"citation":{"ama":"Sauer M, Friml J. Immunolocalization of proteins in plants . In: Hennig L, Köhler C, eds. <i>Plant Developmental Biology</i>. Vol 655. Humana Press; 2010:253-263. doi:<a href=\"https://doi.org/10.1007/978-1-60761-765-5_17\">10.1007/978-1-60761-765-5_17</a>","ieee":"M. Sauer and J. Friml, “Immunolocalization of proteins in plants ,” in <i>Plant Developmental Biology</i>, vol. 655, L. Hennig and C. Köhler, Eds. Humana Press, 2010, pp. 253–263.","chicago":"Sauer, Michael, and Jiří Friml. “Immunolocalization of Proteins in Plants .” In <i>Plant Developmental Biology</i>, edited by Lars Hennig and Claudia Köhler, 655:253–63. Humana Press, 2010. <a href=\"https://doi.org/10.1007/978-1-60761-765-5_17\">https://doi.org/10.1007/978-1-60761-765-5_17</a>.","mla":"Sauer, Michael, and Jiří Friml. “Immunolocalization of Proteins in Plants .” <i>Plant Developmental Biology</i>, edited by Lars Hennig and Claudia Köhler, vol. 655, Humana Press, 2010, pp. 253–63, doi:<a href=\"https://doi.org/10.1007/978-1-60761-765-5_17\">10.1007/978-1-60761-765-5_17</a>.","ista":"Sauer M, Friml J. 2010.Immunolocalization of proteins in plants . In: Plant Developmental Biology. Methods in Molecular Biology, vol. 655, 253–263.","apa":"Sauer, M., &#38; Friml, J. (2010). Immunolocalization of proteins in plants . In L. Hennig &#38; C. Köhler (Eds.), <i>Plant Developmental Biology</i> (Vol. 655, pp. 253–263). Humana Press. <a href=\"https://doi.org/10.1007/978-1-60761-765-5_17\">https://doi.org/10.1007/978-1-60761-765-5_17</a>","short":"M. Sauer, J. Friml, in:, L. Hennig, C. Köhler (Eds.), Plant Developmental Biology, Humana Press, 2010, pp. 253–263."},"abstract":[{"lang":"eng","text":"Rapid advances in the field of plant biology, especially in plant cell biology, have created the need for methods that allow the localization of proteins in situ at subcellular resolution. Although in many cases recombinant proteins with fluorescent proteins can fulfill this task, antibody-based immunological detection of proteins is a complementary technique, which avoids the risk of inducing side effects by a fusion protein, such as misexpression, mistargeting, altered stability, or toxicity. Moreover, recombinant protein techniques are applicable only to a rather limited set of model plants. The immunolocalization protocols presented here can be used to display protein localization patterns in different tissues of various plant species. This chapter describes a whole mount immunolocalization protocol, which has been extensively used in Arabidopsis roots and some above-ground tissues, and that also works in other species. Additionally, for bulky or hard tissue types, a variation of this protocol for paraffin-embedded sections is given."}],"extern":1,"date_updated":"2021-01-12T07:40:53Z","intvolume":"       655"},{"title":"Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling","quality_controlled":0,"_id":"3079","publication":"Molecular Systems Biology","date_created":"2018-12-11T12:01:15Z","month":"12","status":"public","author":[{"first_name":"Krzysztof T","full_name":"Krzysztof Wabnik","orcid":"0000-0001-7263-0560","id":"4DE369A4-F248-11E8-B48F-1D18A9856A87","last_name":"Wabnik"},{"last_name":"Kleine Vehn","first_name":"Jürgen","full_name":"Kleine-Vehn, Jürgen"},{"full_name":"Balla, Jozef","first_name":"Jozef","last_name":"Balla"},{"full_name":"Sauer, Michael","first_name":"Michael","last_name":"Sauer"},{"full_name":"Naramoto, Satoshi","first_name":"Satoshi","last_name":"Naramoto"},{"full_name":"Reinöhl, Vilém","first_name":"Vilém","last_name":"Reinöhl"},{"first_name":"Roeland","full_name":"Merks, Roeland M","last_name":"Merks"},{"full_name":"Govaerts, Willy J","first_name":"Willy","last_name":"Govaerts"},{"first_name":"Jirí","orcid":"0000-0002-8302-7596","full_name":"Jirí Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml"}],"publication_status":"published","day":"21","fulldoi":"https://doi.org/10.1038/msb.2010.103","doi":"10.1038/msb.2010.103","publist_id":"3622","year":"2010","publisher":"Nature Publishing Group","date_published":"2010-12-21T00:00:00Z","type":"journal_article","volume":6,"citation":{"ama":"Wabnik KT, Kleine Vehn J, Balla J, et al. Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling. <i>Molecular Systems Biology</i>. 2010;6. doi:<a href=\"https://doi.org/10.1038/msb.2010.103\">10.1038/msb.2010.103</a>","ieee":"K. T. Wabnik <i>et al.</i>, “Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling,” <i>Molecular Systems Biology</i>, vol. 6. Nature Publishing Group, 2010.","mla":"Wabnik, Krzysztof T., et al. “Emergence of Tissue Polarization from Synergy of Intracellular and Extracellular Auxin Signaling.” <i>Molecular Systems Biology</i>, vol. 6, Nature Publishing Group, 2010, doi:<a href=\"https://doi.org/10.1038/msb.2010.103\">10.1038/msb.2010.103</a>.","short":"K.T. Wabnik, J. Kleine Vehn, J. Balla, M. Sauer, S. Naramoto, V. Reinöhl, R. Merks, W. Govaerts, J. Friml, Molecular Systems Biology 6 (2010).","ista":"Wabnik KT, Kleine Vehn J, Balla J, Sauer M, Naramoto S, Reinöhl V, Merks R, Govaerts W, Friml J. 2010. Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling. Molecular Systems Biology. 6.","apa":"Wabnik, K. T., Kleine Vehn, J., Balla, J., Sauer, M., Naramoto, S., Reinöhl, V., … Friml, J. (2010). Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling. <i>Molecular Systems Biology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/msb.2010.103\">https://doi.org/10.1038/msb.2010.103</a>","chicago":"Wabnik, Krzysztof T, Jürgen Kleine Vehn, Jozef Balla, Michael Sauer, Satoshi Naramoto, Vilém Reinöhl, Roeland Merks, Willy Govaerts, and Jiří Friml. “Emergence of Tissue Polarization from Synergy of Intracellular and Extracellular Auxin Signaling.” <i>Molecular Systems Biology</i>. Nature Publishing Group, 2010. <a href=\"https://doi.org/10.1038/msb.2010.103\">https://doi.org/10.1038/msb.2010.103</a>."},"abstract":[{"lang":"eng","text":"Plant development is exceptionally flexible as manifested by its potential for organogenesis and regeneration, which are processes involving rearrangements of tissue polarities. Fundamental questions concern how individual cells can polarize in a coordinated manner to integrate into the multicellular context. In canalization models, the signaling molecule auxin acts as a polarizing cue, and feedback on the intercellular auxin flow is key for synchronized polarity rearrangements. We provide a novel mechanistic framework for canalization, based on up-to-date experimental data and minimal, biologically plausible assumptions. Our model combines the intracellular auxin signaling for expression of PINFORMED (PIN) auxin transporters and the theoretical postulation of extracellular auxin signaling for modulation of PIN subcellular dynamics. Computer simulations faithfully and robustly recapitulated the experimentally observed patterns of tissue polarity and asymmetric auxin distribution during formation and regeneration of vascular systems and during the competitive regulation of shoot branching by apical dominance. Additionally, our model generated new predictions that could be experimentally validated, highlighting a mechanistically conceivable explanation for the PIN polarization and canalization of the auxin flow in plants."}],"extern":1,"intvolume":"         6","date_updated":"2021-01-12T07:40:54Z"},{"publication":"PNAS","_id":"3080","quality_controlled":0,"title":"Gravity induced PIN transcytosis for polarization of auxin fluxes in gravity sensing root cells","author":[{"full_name":"Kleine-Vehn, Jürgen","first_name":"Jürgen","last_name":"Kleine Vehn"},{"first_name":"Zhaojun","full_name":"Ding, Zhaojun","last_name":"Ding"},{"last_name":"Jones","first_name":"Angharad","full_name":"Jones, Angharad R"},{"first_name":"Masao","full_name":"Tasaka, Masao","last_name":"Tasaka"},{"full_name":"Morita, Miyo T","first_name":"Miyo","last_name":"Morita"},{"last_name":"Friml","first_name":"Jirí","orcid":"0000-0002-8302-7596","full_name":"Jirí Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}],"month":"12","status":"public","issue":"51","date_created":"2018-12-11T12:01:15Z","fulldoi":"https://doi.org/10.1073/pnas.1013145107","day":"21","publication_status":"published","doi":"10.1073/pnas.1013145107","publist_id":"3620","date_published":"2010-12-21T00:00:00Z","type":"journal_article","publisher":"National Academy of Sciences","year":"2010","abstract":[{"text":"Auxin is an essential plant-specific regulator of patterning processes that also controls directional growth of roots and shoots. In response to gravity stimulation, the PIN3 auxin transporter polarizes to the bottomside of gravity-sensing root cells, presumably redirecting the auxin flux toward the lower side of the root and triggering gravitropic bending. By combining live-cell imaging techniques with pharmacological and genetic approaches, we demonstrate that PIN3 polarization does not require secretion of de novo synthesized proteins or protein degradation, but instead involves rapid, transient stimulation of PIN endocytosis, presumably via a clathrin-dependent pathway. Moreover, gravity-induced PIN3 polarization requires the activity of the guanine nucleotide exchange factors for ARF GTPases (ARF-GEF) GNOM-dependent polar-targeting path-ways and might involve endosome-based PIN3 translocation from one cell side to another. Our data suggest that gravity perception acts at several instances of PIN3 trafficking, ultimately leading to the polarization of PIN3, which presumably aligns auxin fluxes with gravity vector and mediates downstream root gravitropic response.","lang":"eng"}],"page":"22344 - 22349","citation":{"ieee":"J. Kleine Vehn, Z. Ding, A. Jones, M. Tasaka, M. Morita, and J. Friml, “Gravity induced PIN transcytosis for polarization of auxin fluxes in gravity sensing root cells,” <i>PNAS</i>, vol. 107, no. 51. National Academy of Sciences, pp. 22344–22349, 2010.","ama":"Kleine Vehn J, Ding Z, Jones A, Tasaka M, Morita M, Friml J. Gravity induced PIN transcytosis for polarization of auxin fluxes in gravity sensing root cells. <i>PNAS</i>. 2010;107(51):22344-22349. doi:<a href=\"https://doi.org/10.1073/pnas.1013145107\">10.1073/pnas.1013145107</a>","short":"J. Kleine Vehn, Z. Ding, A. Jones, M. Tasaka, M. Morita, J. Friml, PNAS 107 (2010) 22344–22349.","apa":"Kleine Vehn, J., Ding, Z., Jones, A., Tasaka, M., Morita, M., &#38; Friml, J. (2010). Gravity induced PIN transcytosis for polarization of auxin fluxes in gravity sensing root cells. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1013145107\">https://doi.org/10.1073/pnas.1013145107</a>","ista":"Kleine Vehn J, Ding Z, Jones A, Tasaka M, Morita M, Friml J. 2010. Gravity induced PIN transcytosis for polarization of auxin fluxes in gravity sensing root cells. PNAS. 107(51), 22344–22349.","mla":"Kleine Vehn, Jürgen, et al. “Gravity Induced PIN Transcytosis for Polarization of Auxin Fluxes in Gravity Sensing Root Cells.” <i>PNAS</i>, vol. 107, no. 51, National Academy of Sciences, 2010, pp. 22344–49, doi:<a href=\"https://doi.org/10.1073/pnas.1013145107\">10.1073/pnas.1013145107</a>.","chicago":"Kleine Vehn, Jürgen, Zhaojun Ding, Angharad Jones, Masao Tasaka, Miyo Morita, and Jiří Friml. “Gravity Induced PIN Transcytosis for Polarization of Auxin Fluxes in Gravity Sensing Root Cells.” <i>PNAS</i>. National Academy of Sciences, 2010. <a href=\"https://doi.org/10.1073/pnas.1013145107\">https://doi.org/10.1073/pnas.1013145107</a>."},"volume":107,"date_updated":"2021-01-12T07:40:55Z","intvolume":"       107","extern":1},{"abstract":[{"lang":"eng","text":"Endocytosis is crucial for various cellular functions and development of multicellular organisms. In mammals and yeast, ADP-ribosylation factor (ARF) GTPases, key components of vesicle formation, and their regulators ARF-guanine nucleotide exchange factors (GEFs) and ARF-GTPase-activating protein (GAPs) mediate endocytosis. A similar role has not been established in plants,mainly because of the lack of the canonical ARF and ARF-GEF components that are involved in endocytosis in other eukaryotes. In this study, we revealed a regulatory mechanism of endocytosis in plants based on ARF GTPase activity.Weidentified that ARF-GEFGNOMand ARF-GAP VASCULAR NETWORK DEFECTIVE 3 (VAN3), both of which are involved in polar auxin transport-dependent morphogenesis, localize at the plasma membranes as well as in intracellular structures. Variable angle epifluorescence microscopy revealed that GNOM and VAN3 localize to partially overlapping discrete foci at the plasmamembranes that are regularly associated with the endocytic vesicle coat clathrin. Genetic studies revealed that GNOM and VAN3 activities are required for endocytosis and internalization of plasma membrane proteins, including PIN-FORMED auxin transporters. These findings identified ARF GTPase-based regulatory mechanisms for endocytosis in plants. GNOMand VAN3 previously were proposed to function solely at the recycling endosomes and trans-Golgi networks, respectively. Therefore our findings uncovered an additional cellular function of these prominent developmental regulators."}],"citation":{"ama":"Naramoto S, Kleine Vehn J, Robert S, et al. ADP ribosylation factor machinery mediates endocytosis in plant cells. <i>PNAS</i>. 2010;107(50):21890-21895. doi:<a href=\"https://doi.org/10.1073/pnas.1016260107\">10.1073/pnas.1016260107</a>","ieee":"S. Naramoto <i>et al.</i>, “ADP ribosylation factor machinery mediates endocytosis in plant cells,” <i>PNAS</i>, vol. 107, no. 50. National Academy of Sciences, pp. 21890–21895, 2010.","mla":"Naramoto, Satoshi, et al. “ADP Ribosylation Factor Machinery Mediates Endocytosis in Plant Cells.” <i>PNAS</i>, vol. 107, no. 50, National Academy of Sciences, 2010, pp. 21890–95, doi:<a href=\"https://doi.org/10.1073/pnas.1016260107\">10.1073/pnas.1016260107</a>.","apa":"Naramoto, S., Kleine Vehn, J., Robert, S., Fujimoto, M., Dainobu, T., Paciorek, T., … Friml, J. (2010). ADP ribosylation factor machinery mediates endocytosis in plant cells. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1016260107\">https://doi.org/10.1073/pnas.1016260107</a>","ista":"Naramoto S, Kleine Vehn J, Robert S, Fujimoto M, Dainobu T, Paciorek T, Ueda T, Nakano A, Van Montagu M, Fukuda H, Friml J. 2010. ADP ribosylation factor machinery mediates endocytosis in plant cells. PNAS. 107(50), 21890–21895.","short":"S. Naramoto, J. Kleine Vehn, S. Robert, M. Fujimoto, T. Dainobu, T. Paciorek, T. Ueda, A. Nakano, M. Van Montagu, H. Fukuda, J. Friml, PNAS 107 (2010) 21890–21895.","chicago":"Naramoto, Satoshi, Jürgen Kleine Vehn, Stéphanie Robert, Masaru Fujimoto, Tomoko Dainobu, Tomasz Paciorek, Takashi Ueda, et al. “ADP Ribosylation Factor Machinery Mediates Endocytosis in Plant Cells.” <i>PNAS</i>. National Academy of Sciences, 2010. <a href=\"https://doi.org/10.1073/pnas.1016260107\">https://doi.org/10.1073/pnas.1016260107</a>."},"volume":107,"page":"21890 - 21895","intvolume":"       107","date_updated":"2021-01-12T07:40:55Z","extern":1,"publist_id":"3621","publisher":"National Academy of Sciences","type":"journal_article","date_published":"2010-12-14T00:00:00Z","year":"2010","day":"14","fulldoi":"https://doi.org/10.1073/pnas.1016260107","publication_status":"published","doi":"10.1073/pnas.1016260107","publication":"PNAS","title":"ADP ribosylation factor machinery mediates endocytosis in plant cells","quality_controlled":0,"_id":"3081","status":"public","month":"12","author":[{"last_name":"Naramoto","first_name":"Satoshi","full_name":"Naramoto, Satoshi"},{"full_name":"Kleine-Vehn, Jürgen","first_name":"Jürgen","last_name":"Kleine Vehn"},{"last_name":"Robert","full_name":"Robert, Stéphanie","first_name":"Stéphanie"},{"full_name":"Fujimoto, Masaru","first_name":"Masaru","last_name":"Fujimoto"},{"first_name":"Tomoko","full_name":"Dainobu, Tomoko","last_name":"Dainobu"},{"full_name":"Paciorek, Tomasz","first_name":"Tomasz","last_name":"Paciorek"},{"last_name":"Ueda","first_name":"Takashi","full_name":"Ueda, Takashi"},{"last_name":"Nakano","full_name":"Nakano, Akihiko","first_name":"Akihiko"},{"last_name":"Van Montagu","first_name":"Marc","full_name":"Van Montagu, Marc C"},{"first_name":"Hiroo","full_name":"Fukuda, Hiroo","last_name":"Fukuda"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Jirí Friml","orcid":"0000-0002-8302-7596","first_name":"Jirí","last_name":"Friml"}],"date_created":"2018-12-11T12:01:15Z","issue":"50"},{"abstract":[{"text":"The four microsporangia of the flowering plant anther develop from archesporial cells in the L2 of the primordium. Within each microsporangium, developing microsporocytes are surrounded by concentric monolayers of tapetal, middle layer and endothecial cells. How this intricate array of tissues, each containing relatively few cells, is established in an organ possessing no formal meristems is poorly understood. We describe here the pivotal role of the LRR receptor kinase EXCESS MICROSPOROCYTES 1 (EMS1) in forming the monolayer of tapetal nurse cells in Arabidopsis. Unusually for plants, tapetal cells are specified very early in development, and are subsequently stimulated to proliferate by a receptor-like kinase (RLK) complex that includes EMS1. Mutations in members of this EMS1 signalling complex and its putative ligand result in male-sterile plants in which tapetal initials fail to proliferate. Surprisingly, these cells continue to develop, isolated at the locular periphery. Mutant and wild-type microsporangia expand at similar rates and the ‘tapetal’ space at the periphery of mutant locules becomes occupied by microsporocytes. However, induction of late expression of EMS1 in the few tapetal initials in ems1 plants results in their proliferation to generate a functional tapetum, and this proliferation suppresses microsporocyte number. Our experiments also show that integrity of the tapetal monolayer is crucial for the maintenance of the polarity of divisions within it. This unexpected autonomy of the tapetal ‘lineage’ is discussed in the context of tissue development in complex plant organs, where constancy in size, shape and cell number is crucial.","lang":"eng"}],"volume":137,"page":"2409-2416","intvolume":"       137","date_updated":"2023-05-08T10:57:11Z","extern":"1","publisher":"The Company of Biologists","type":"journal_article","year":"2010","language":[{"iso":"eng"}],"oa_version":"None","pmid":1,"fulldoi":"https://doi.org/10.1242/dev.049320","publication_status":"published","article_processing_charge":"No","department":[{"_id":"XiFe"}],"title":"Tapetal cell fate, lineage and proliferation in the Arabidopsis anther","_id":"12199","publication_identifier":{"issn":["1477-9129","0950-1991"]},"date_created":"2023-01-16T09:21:54Z","citation":{"ama":"Feng X, Dickinson HG. Tapetal cell fate, lineage and proliferation in the Arabidopsis anther. <i>Development</i>. 2010;137(14):2409-2416. doi:<a href=\"https://doi.org/10.1242/dev.049320\">10.1242/dev.049320</a>","ieee":"X. Feng and H. G. Dickinson, “Tapetal cell fate, lineage and proliferation in the Arabidopsis anther,” <i>Development</i>, vol. 137, no. 14. The Company of Biologists, pp. 2409–2416, 2010.","mla":"Feng, Xiaoqi, and Hugh G. Dickinson. “Tapetal Cell Fate, Lineage and Proliferation in the Arabidopsis Anther.” <i>Development</i>, vol. 137, no. 14, The Company of Biologists, 2010, pp. 2409–16, doi:<a href=\"https://doi.org/10.1242/dev.049320\">10.1242/dev.049320</a>.","short":"X. Feng, H.G. Dickinson, Development 137 (2010) 2409–2416.","apa":"Feng, X., &#38; Dickinson, H. G. (2010). Tapetal cell fate, lineage and proliferation in the Arabidopsis anther. <i>Development</i>. The Company of Biologists. <a href=\"https://doi.org/10.1242/dev.049320\">https://doi.org/10.1242/dev.049320</a>","ista":"Feng X, Dickinson HG. 2010. Tapetal cell fate, lineage and proliferation in the Arabidopsis anther. Development. 137(14), 2409–2416.","chicago":"Feng, Xiaoqi, and Hugh G. Dickinson. “Tapetal Cell Fate, Lineage and Proliferation in the Arabidopsis Anther.” <i>Development</i>. The Company of Biologists, 2010. <a href=\"https://doi.org/10.1242/dev.049320\">https://doi.org/10.1242/dev.049320</a>."},"scopus_import":"1","external_id":{"pmid":["20570940"]},"date_published":"2010-07-15T00:00:00Z","acknowledgement":"We thank the following for providing mutant lines and reagents: Hong Ma, De Ye, Sacco De Vries, and Rod Scott for providing the pA9::Barnase lines and information on A9 expression patterns. Carla Galinha and Paolo Piazza gave valuable help with in situ hybridisation and qRT-PCR, respectively, and we acknowledge Qing Zhang, Helen Prescott and Matthew Dicks for providing excellent technical assistance. We are indebted to Miltos Tsiantis and Angela Hay for helpful discussion, and the research was funded by Oxford University through a Clarendon Scholarship to X.F., with additional financial support from Magdalen College (Oxford).","day":"15","article_type":"original","keyword":["Developmental Biology","Molecular Biology","Anther Tapetum","Arabidopsis","Cell Fate Establishment","EMS1","Reproductive Cell Lineage"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1242/dev.049320","publication":"Development","quality_controlled":"1","month":"07","status":"public","author":[{"first_name":"Xiaoqi","orcid":"0000-0002-4008-1234","full_name":"Feng, Xiaoqi","id":"e0164712-22ee-11ed-b12a-d80fcdf35958","last_name":"Feng"},{"first_name":"Hugh G.","full_name":"Dickinson, Hugh G.","last_name":"Dickinson"}],"issue":"14"},{"article_processing_charge":"No","oa_version":"None","pmid":1,"fulldoi":"https://doi.org/10.1042/bst0380571","publication_status":"published","publication_identifier":{"issn":["0300-5127","1470-8752"]},"date_created":"2023-01-16T09:22:18Z","department":[{"_id":"XiFe"}],"title":"Cell–cell interactions during patterning of the <i>Arabidopsis</i> anther","_id":"12200","date_updated":"2023-05-08T10:57:59Z","intvolume":"        38","extern":"1","abstract":[{"text":"Key steps in the evolution of the angiosperm anther include the patterning of the concentrically organized microsporangium and the incorporation of four such microsporangia into a leaf-like structure. Mutant studies in the model plant Arabidopsis thaliana are leading to an increasingly accurate picture of (i) the cell lineages culminating in the different cell types present in the microsporangium (the microsporocytes, the tapetum, and the middle and endothecial layers), and (ii) some of the genes responsible for specifying their fates. However, the processes that confer polarity on the developing anther and position the microsporangia within it remain unclear. Certainly, data from a range of experimental strategies suggest that hormones play a central role in establishing polarity and the patterning of the anther initial, and may be responsible for locating the microsporangia. But the fact that microsporangia were originally positioned externally suggests that their development is likely to be autonomous, perhaps with the reproductive cells generating signals controlling the growth and division of the investing anther epidermis. These possibilities are discussed in the context of the expression of genes which initiate and maintain male and female reproductive development, and in the perspective of our current views of anther evolution.","lang":"eng"}],"volume":38,"page":"571-576","publisher":"Portland Press Ltd.","type":"journal_article","year":"2010","language":[{"iso":"eng"}],"keyword":["Biochemistry","Anther Development","Arabidopsis","Cell Fate","Microsporangium","Polarity","Receptor Kinase"],"doi":"10.1042/bst0380571","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"22","article_type":"original","month":"03","status":"public","author":[{"last_name":"Feng","first_name":"Xiaoqi","id":"e0164712-22ee-11ed-b12a-d80fcdf35958","full_name":"Feng, Xiaoqi","orcid":"0000-0002-4008-1234"},{"last_name":"Dickinson","first_name":"Hugh G.","full_name":"Dickinson, Hugh G."}],"issue":"2","publication":"Biochemical Society Transactions","quality_controlled":"1","scopus_import":"1","citation":{"chicago":"Feng, Xiaoqi, and Hugh G. Dickinson. “Cell–Cell Interactions during Patterning of the <i>Arabidopsis</i> Anther.” <i>Biochemical Society Transactions</i>. Portland Press Ltd., 2010. <a href=\"https://doi.org/10.1042/bst0380571\">https://doi.org/10.1042/bst0380571</a>.","mla":"Feng, Xiaoqi, and Hugh G. Dickinson. “Cell–Cell Interactions during Patterning of the <i>Arabidopsis</i> Anther.” <i>Biochemical Society Transactions</i>, vol. 38, no. 2, Portland Press Ltd., 2010, pp. 571–76, doi:<a href=\"https://doi.org/10.1042/bst0380571\">10.1042/bst0380571</a>.","ista":"Feng X, Dickinson HG. 2010. Cell–cell interactions during patterning of the <i>Arabidopsis</i> anther. Biochemical Society Transactions. 38(2), 571–576.","apa":"Feng, X., &#38; Dickinson, H. G. (2010). Cell–cell interactions during patterning of the <i>Arabidopsis</i> anther. <i>Biochemical Society Transactions</i>. Portland Press Ltd. <a href=\"https://doi.org/10.1042/bst0380571\">https://doi.org/10.1042/bst0380571</a>","short":"X. Feng, H.G. Dickinson, Biochemical Society Transactions 38 (2010) 571–576.","ieee":"X. Feng and H. G. Dickinson, “Cell–cell interactions during patterning of the <i>Arabidopsis</i> anther,” <i>Biochemical Society Transactions</i>, vol. 38, no. 2. Portland Press Ltd., pp. 571–576, 2010.","ama":"Feng X, Dickinson HG. Cell–cell interactions during patterning of the <i>Arabidopsis</i> anther. <i>Biochemical Society Transactions</i>. 2010;38(2):571-576. doi:<a href=\"https://doi.org/10.1042/bst0380571\">10.1042/bst0380571</a>"},"date_published":"2010-03-22T00:00:00Z","external_id":{"pmid":["20298223"]}},{"date_published":"2010-10-01T00:00:00Z","citation":{"ieee":"F. Pellicciotti, A. Bauder, and M. Parola, “Effect of glaciers on streamflow trends in the Swiss Alps,” <i>Water Resources Research</i>, vol. 46, no. 10. American Geophysical Union, 2010.","ama":"Pellicciotti F, Bauder A, Parola M. Effect of glaciers on streamflow trends in the Swiss Alps. <i>Water Resources Research</i>. 2010;46(10). doi:<a href=\"https://doi.org/10.1029/2009wr009039\">10.1029/2009wr009039</a>","chicago":"Pellicciotti, Francesca, A. Bauder, and M. Parola. “Effect of Glaciers on Streamflow Trends in the Swiss Alps.” <i>Water Resources Research</i>. American Geophysical Union, 2010. <a href=\"https://doi.org/10.1029/2009wr009039\">https://doi.org/10.1029/2009wr009039</a>.","apa":"Pellicciotti, F., Bauder, A., &#38; Parola, M. (2010). Effect of glaciers on streamflow trends in the Swiss Alps. <i>Water Resources Research</i>. American Geophysical Union. <a href=\"https://doi.org/10.1029/2009wr009039\">https://doi.org/10.1029/2009wr009039</a>","ista":"Pellicciotti F, Bauder A, Parola M. 2010. Effect of glaciers on streamflow trends in the Swiss Alps. Water Resources Research. 46(10), W10522.","short":"F. Pellicciotti, A. Bauder, M. Parola, Water Resources Research 46 (2010).","mla":"Pellicciotti, Francesca, et al. “Effect of Glaciers on Streamflow Trends in the Swiss Alps.” <i>Water Resources Research</i>, vol. 46, no. 10, W10522, American Geophysical Union, 2010, doi:<a href=\"https://doi.org/10.1029/2009wr009039\">10.1029/2009wr009039</a>."},"scopus_import":"1","quality_controlled":"1","publication":"Water Resources Research","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2009WR009039"}],"issue":"10","author":[{"last_name":"Pellicciotti","first_name":"Francesca","orcid":"0000-0002-5554-8087","full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"last_name":"Bauder","first_name":"A.","full_name":"Bauder, A."},{"last_name":"Parola","first_name":"M.","full_name":"Parola, M."}],"month":"10","status":"public","article_type":"original","day":"01","doi":"10.1029/2009wr009039","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["Water Science and Technology"],"language":[{"iso":"eng"}],"year":"2010","type":"journal_article","publisher":"American Geophysical Union","article_number":"W10522","volume":46,"abstract":[{"lang":"eng","text":"Daily streamflow from stations close to five Swiss glaciers is analyzed for trends with the Mann-Kendall test. We consider a common period of record (1974–2004) and longer periods based on data availability. The trend statistical significance is tested on annual and seasonal bases. We also examine changes in precipitation, temperature, and snow cover characteristics. Highly glacierized basins show statistically significant positive trends in annual streamflow caused by increasing streamflow in spring and summer. Trends are more numerous and stronger at lower and mid than at the upper quantiles. The basin characterized by lower glacier coverage, conversely, does not exhibit consistently statistically significant trends. Changes in precipitation are not sufficient to explain the observed streamflow trends. Air temperature sees an increase in mean, minimum, and maximum values at all sites. Variations in the seasonal snow accumulation and ablation process are evident. Solid precipitation is decreasing at all sites and trends may be due to a shift from snowfall into rainfall. Mean snow depth is also decreasing, and its duration is getting shorter because of a decrease in solid precipitation and enhanced melting. Trend magnitude attenuates with longer time series. Contrasting trends are detected for different subperiods in the last 70 years: statistically significant negative trends are observed in the periods 1944–1974 and 1954–1984 for Aletschgletscher, in contrast with the results for the common period. These trends are explained by different rates of ice volume changes, and the sign of trends is clearly related to phases of positive or negative glacier mass balance."}],"extern":"1","intvolume":"        46","date_updated":"2024-10-14T12:00:48Z","_id":"12653","title":"Effect of glaciers on streamflow trends in the Swiss Alps","date_created":"2023-02-20T08:18:27Z","publication_identifier":{"eissn":["1944-7973"],"issn":["0043-1397"]},"publication_status":"published","fulldoi":"https://doi.org/10.1029/2009wr009039","oa_version":"Published Version","oa":1,"article_processing_charge":"No"},{"doi":"10.1038/nature09545","publication_status":"published","fulldoi":"https://doi.org/10.1038/nature09545","day":"11","issue":"7321","date_created":"2018-12-11T11:51:14Z","author":[{"id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3937-1330","full_name":"Maximilian Jösch","first_name":"Maximilian A","last_name":"Jösch"},{"full_name":"Schnell, Bettina","first_name":"Bettina","last_name":"Schnell"},{"full_name":"Raghu, Shamprasad V","first_name":"Shamprasad","last_name":"Raghu"},{"last_name":"Reiff","first_name":"Dierk","full_name":"Reiff, Dierk F"},{"last_name":"Borst","full_name":"Borst, Alexander","first_name":"Alexander"}],"status":"public","month":"11","quality_controlled":0,"_id":"1300","title":"ON and off pathways in Drosophila motion vision","publication":"Nature","extern":1,"date_updated":"2021-01-12T06:49:44Z","intvolume":"       468","page":"300 - 304","volume":468,"citation":{"short":"M.A. Jösch, B. Schnell, S. Raghu, D. Reiff, A. Borst, Nature 468 (2010) 300–304.","apa":"Jösch, M. A., Schnell, B., Raghu, S., Reiff, D., &#38; Borst, A. (2010). ON and off pathways in Drosophila motion vision. <i>Nature</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/nature09545\">https://doi.org/10.1038/nature09545</a>","ista":"Jösch MA, Schnell B, Raghu S, Reiff D, Borst A. 2010. ON and off pathways in Drosophila motion vision. Nature. 468(7321), 300–304.","mla":"Jösch, Maximilian A., et al. “ON and off Pathways in Drosophila Motion Vision.” <i>Nature</i>, vol. 468, no. 7321, Nature Publishing Group, 2010, pp. 300–04, doi:<a href=\"https://doi.org/10.1038/nature09545\">10.1038/nature09545</a>.","chicago":"Jösch, Maximilian A, Bettina Schnell, Shamprasad Raghu, Dierk Reiff, and Alexander Borst. “ON and off Pathways in Drosophila Motion Vision.” <i>Nature</i>. Nature Publishing Group, 2010. <a href=\"https://doi.org/10.1038/nature09545\">https://doi.org/10.1038/nature09545</a>.","ama":"Jösch MA, Schnell B, Raghu S, Reiff D, Borst A. ON and off pathways in Drosophila motion vision. <i>Nature</i>. 2010;468(7321):300-304. doi:<a href=\"https://doi.org/10.1038/nature09545\">10.1038/nature09545</a>","ieee":"M. A. Jösch, B. Schnell, S. Raghu, D. Reiff, and A. Borst, “ON and off pathways in Drosophila motion vision,” <i>Nature</i>, vol. 468, no. 7321. Nature Publishing Group, pp. 300–304, 2010."},"abstract":[{"lang":"eng","text":"Motion vision is a major function of all visual systems, yet the underlying neural mechanisms and circuits are still elusive. In the lamina, the first optic neuropile of Drosophila melanogaster, photoreceptor signals split into five parallel pathways, L1-L5. Here we examine how these pathways contribute to visual motion detection by combining genetic block and reconstitution of neural activity in different lamina cell types with whole-cell recordings from downstream motion-sensitive neurons. We find reduced responses to moving gratings if L1 or L2 is blocked; however, reconstitution of photoreceptor input to only L1 or L2 results in wild-type responses. Thus, the first experiment indicates the necessity of both pathways, whereas the second indicates sufficiency of each single pathway. This contradiction can be explained by electrical coupling between L1 and L2, allowing for activation of both pathways even when only one of them receives photoreceptor input. A fundamental difference between the L1 pathway and the L2 pathway is uncovered when blocking L1 or L2 output while presenting moving edges of positive (ON) or negative (OFF) contrast polarity: blocking L1 eliminates the response to moving ON edges, whereas blocking L2 eliminates the response to moving OFF edges. Thus, similar to the segregation of photoreceptor signals in ON and OFF bipolar cell pathways in the vertebrate retina, photoreceptor signals segregate into ON-L1 and OFF-L2 channels in the lamina of Drosophila."}],"year":"2010","date_published":"2010-11-11T00:00:00Z","type":"journal_article","publisher":"Nature Publishing Group","publist_id":"5970"},{"article_type":"original","day":"01","doi":"10.1152/jn.00950.2009","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","publication":"Journal of Neurophysiology","quality_controlled":"1","author":[{"last_name":"Schnell","full_name":"Schnell, Bettina","first_name":"Bettina"},{"first_name":"Maximilian A","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3937-1330","full_name":"Jösch, Maximilian A","last_name":"Jösch"},{"full_name":"Förstner, Friedrich","first_name":"Friedrich","last_name":"Förstner"},{"last_name":"Raghu","first_name":"Shamprasad","full_name":"Raghu, Shamprasad"},{"last_name":"Otsuna","full_name":"Otsuna, Hideo","first_name":"Hideo"},{"last_name":"Ito","first_name":"Kei","full_name":"Ito, Kei"},{"last_name":"Borst","full_name":"Borst, Alexander","first_name":"Alexander"},{"full_name":"Reiff, Dierk","first_name":"Dierk","last_name":"Reiff"}],"status":"public","month":"03","issue":"3","citation":{"ieee":"B. Schnell <i>et al.</i>, “Processing of horizontal optic flow in three visual interneurons of the Drosophila brain,” <i>Journal of Neurophysiology</i>, vol. 103, no. 3. American Physiological Society, pp. 1646–1657, 2010.","ama":"Schnell B, Jösch MA, Förstner F, et al. Processing of horizontal optic flow in three visual interneurons of the Drosophila brain. <i>Journal of Neurophysiology</i>. 2010;103(3):1646-1657. doi:<a href=\"https://doi.org/10.1152/jn.00950.2009\">10.1152/jn.00950.2009</a>","chicago":"Schnell, Bettina, Maximilian A Jösch, Friedrich Förstner, Shamprasad Raghu, Hideo Otsuna, Kei Ito, Alexander Borst, and Dierk Reiff. “Processing of Horizontal Optic Flow in Three Visual Interneurons of the Drosophila Brain.” <i>Journal of Neurophysiology</i>. American Physiological Society, 2010. <a href=\"https://doi.org/10.1152/jn.00950.2009\">https://doi.org/10.1152/jn.00950.2009</a>.","mla":"Schnell, Bettina, et al. “Processing of Horizontal Optic Flow in Three Visual Interneurons of the Drosophila Brain.” <i>Journal of Neurophysiology</i>, vol. 103, no. 3, American Physiological Society, 2010, pp. 1646–57, doi:<a href=\"https://doi.org/10.1152/jn.00950.2009\">10.1152/jn.00950.2009</a>.","apa":"Schnell, B., Jösch, M. A., Förstner, F., Raghu, S., Otsuna, H., Ito, K., … Reiff, D. (2010). Processing of horizontal optic flow in three visual interneurons of the Drosophila brain. <i>Journal of Neurophysiology</i>. American Physiological Society. <a href=\"https://doi.org/10.1152/jn.00950.2009\">https://doi.org/10.1152/jn.00950.2009</a>","ista":"Schnell B, Jösch MA, Förstner F, Raghu S, Otsuna H, Ito K, Borst A, Reiff D. 2010. Processing of horizontal optic flow in three visual interneurons of the Drosophila brain. Journal of Neurophysiology. 103(3), 1646–1657.","short":"B. Schnell, M.A. Jösch, F. Förstner, S. Raghu, H. Otsuna, K. Ito, A. Borst, D. Reiff, Journal of Neurophysiology 103 (2010) 1646–1657."},"external_id":{"pmid":["20089816"]},"date_published":"2010-03-01T00:00:00Z","acknowledgement":"This work was supported by the Max-Planck-Society and by a Human Frontier Science Program grant to K. Ito, A. Borst, and B. Nelson.","fulldoi":"https://doi.org/10.1152/jn.00950.2009","pmid":1,"oa_version":"None","publication_status":"published","article_processing_charge":"No","_id":"1301","title":"Processing of horizontal optic flow in three visual interneurons of the Drosophila brain","publication_identifier":{"issn":[" 0022-3077"],"eissn":["1522-1598"]},"date_created":"2018-12-11T11:51:14Z","abstract":[{"text":"Motion vision is essential for navigating through the environment. Due to its genetic amenability, the fruit fly Drosophila has been serving for a lengthy period as a model organism for studying optomotor behavior as elicited by large-field horizontal motion. However, the neurons underlying the control of this behavior have not been studied in Drosophila so far. Here we report the first whole cell recordings from three cells of the horizontal system (HSN, HSE, and HSS) in the lobula plate of Drosophila. All three HS cells are tuned to large-field horizontal motion in a direction-selective way; they become excited by front-to-back motion and inhibited by back-to-front motion in the ipsilateral field of view. The response properties of HS cells such as contrast and velocity dependence are in accordance with the correlation-type model of motion detection. Neurobiotin injection suggests extensive coupling among ipsilateral HS cells and additional coupling to tangential cells that have their dendrites in the contralateral hemisphere of the brain. This connectivity scheme accounts for the complex layout of their receptive fields and explains their sensitivity both to ipsilateral and to contralateral motion. Thus the main response properties of Drosophila HS cells are strikingly similar to the responses of their counterparts in the blowfly Calliphora, although we found substantial differences with respect to their dendritic structure and connectivity. This long-awaited functional characterization of HS cells in Drosophila provides the basis for the future dissection of optomotor behavior and the underlying neural circuitry by combining genetics, physiology, and behavior.","lang":"eng"}],"page":"1646 - 1657","volume":103,"date_updated":"2021-01-12T06:49:44Z","intvolume":"       103","extern":"1","publist_id":"5971","type":"journal_article","publisher":"American Physiological Society","language":[{"iso":"eng"}],"year":"2010"},{"extern":1,"intvolume":"        29","date_updated":"2021-01-12T06:55:16Z","citation":{"ieee":"T. Beeler, B. Bickel, P. Beardsley, B. Sumner, and M. Groß, “High-quality single-shot capture of facial geometry,” <i>ACM Transactions on Graphics</i>, vol. 29, no. 4. ACM, 2010.","ama":"Beeler T, Bickel B, Beardsley P, Sumner B, Groß M. High-quality single-shot capture of facial geometry. <i>ACM Transactions on Graphics</i>. 2010;29(4). doi:<a href=\"https://doi.org/10.1145/1778765.1778777\">10.1145/1778765.1778777</a>","short":"T. Beeler, B. Bickel, P. Beardsley, B. Sumner, M. Groß, ACM Transactions on Graphics 29 (2010).","ista":"Beeler T, Bickel B, Beardsley P, Sumner B, Groß M. 2010. High-quality single-shot capture of facial geometry. ACM Transactions on Graphics. 29(4).","apa":"Beeler, T., Bickel, B., Beardsley, P., Sumner, B., &#38; Groß, M. (2010). High-quality single-shot capture of facial geometry. <i>ACM Transactions on Graphics</i>. ACM. <a href=\"https://doi.org/10.1145/1778765.1778777\">https://doi.org/10.1145/1778765.1778777</a>","mla":"Beeler, Thabo, et al. “High-Quality Single-Shot Capture of Facial Geometry.” <i>ACM Transactions on Graphics</i>, vol. 29, no. 4, ACM, 2010, doi:<a href=\"https://doi.org/10.1145/1778765.1778777\">10.1145/1778765.1778777</a>.","chicago":"Beeler, Thabo, Bernd Bickel, Paul Beardsley, Bob Sumner, and Markus Groß. “High-Quality Single-Shot Capture of Facial Geometry.” <i>ACM Transactions on Graphics</i>. ACM, 2010. <a href=\"https://doi.org/10.1145/1778765.1778777\">https://doi.org/10.1145/1778765.1778777</a>."},"volume":29,"abstract":[{"lang":"eng","text":"This paper describes a passive stereo system for capturing the 3D geometry of a face in a single-shot under standard light sources. The system is low-cost and easy to deploy. Results are submillimeter accurate and commensurate with those from state-ofthe-art systems based on active lighting, and the models meet the quality requirements of a demanding domain like the movie industry. Recovered models are shown for captures from both high-end cameras in a studio setting and from a consumer binocular-stereo camera, demonstrating scalability across a spectrum of camera deployments, and showing the potential for 3D face modeling to move beyond the professional arena and into the emerging consumer market in stereoscopic photography. Our primary technical contribution is a modification of standard stereo refinement methods to capture pore-scale geometry, using a qualitative approach that produces visually realistic results. The second technical contribution is a calibration method suited to face capture systems. The systemic contribution includes multiple demonstrations of system robustness and quality. These include capture in a studio setup, capture off a consumer binocular-stereo camera, scanning of faces of varying gender and ethnicity and age, capture of highly-transient facial expression, and scanning a physical mask to provide ground-truth validation."}],"year":"2010","publisher":"ACM","date_published":"2010-01-01T00:00:00Z","type":"journal_article","publist_id":"4938","doi":"10.1145/1778765.1778777","oa":1,"publication_status":"published","day":"01","fulldoi":"https://doi.org/10.1145/1778765.1778777","date_created":"2018-12-11T11:55:41Z","issue":"4","main_file_link":[{"open_access":"1","url":"http://e-collection.library.ethz.ch/view/eth:5079"}],"status":"public","month":"01","author":[{"last_name":"Beeler","first_name":"Thabo","full_name":"Beeler, Thabo"},{"last_name":"Bickel","first_name":"Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6511-9385","full_name":"Bernd Bickel"},{"full_name":"Beardsley, Paul A","first_name":"Paul","last_name":"Beardsley"},{"full_name":"Sumner, Bob","first_name":"Bob","last_name":"Sumner"},{"full_name":"Groß, Markus S","first_name":"Markus","last_name":"Groß"}],"title":"High-quality single-shot capture of facial geometry","_id":"2095","quality_controlled":0,"publication":"ACM Transactions on Graphics"},{"date_published":"2010-04-14T00:00:00Z","type":"journal_article","publisher":"Springer","year":"2010","publist_id":"4939","date_updated":"2021-01-12T06:55:16Z","intvolume":"        53","extern":1,"abstract":[{"lang":"eng","text":"Point-based graphics has gained much attention as an alternative to polygon-based approaches because of its simplicity and flexibility. However, current point-based techniques do not provide a sufficient rendering quality for translucent materials such as human skin. In this paper, we propose a point-based framework with subsurface scattering of light, which is important to create the soft and semi-translucent appearance of human skin. To accurately simulate subsurface scattering in multilayered materials, we present splat-based diffusion to apply a linear combination of several Gaussian basis functions to each splat in object space. Compared to existing point-based approaches, our method offers a significantly improved visual quality in rendering human faces and provides a similar visual quality to polygon-based rendering using the texture space diffusion technique. We demonstrate the effectiveness of our approach in rendering scanned faces realistically."}],"page":"911 - 919","citation":{"ieee":"H. Kim, B. Bickel, M. Groß, and S. Choi, “Subsurface scattering using splat-based diffusion in point-based rendering,” <i>Science in China, Series F: Information Sciences</i>, vol. 53, no. 5. Springer, pp. 911–919, 2010.","ama":"Kim H, Bickel B, Groß M, Choi S. Subsurface scattering using splat-based diffusion in point-based rendering. <i>Science in China, Series F: Information Sciences</i>. 2010;53(5):911-919. doi:<a href=\"https://doi.org/10.1007/s11432-010-0068-y\">10.1007/s11432-010-0068-y</a>","mla":"Kim, Hyeonjoong, et al. “Subsurface Scattering Using Splat-Based Diffusion in Point-Based Rendering.” <i>Science in China, Series F: Information Sciences</i>, vol. 53, no. 5, Springer, 2010, pp. 911–19, doi:<a href=\"https://doi.org/10.1007/s11432-010-0068-y\">10.1007/s11432-010-0068-y</a>.","ista":"Kim H, Bickel B, Groß M, Choi S. 2010. Subsurface scattering using splat-based diffusion in point-based rendering. Science in China, Series F: Information Sciences. 53(5), 911–919.","apa":"Kim, H., Bickel, B., Groß, M., &#38; Choi, S. (2010). Subsurface scattering using splat-based diffusion in point-based rendering. <i>Science in China, Series F: Information Sciences</i>. Springer. <a href=\"https://doi.org/10.1007/s11432-010-0068-y\">https://doi.org/10.1007/s11432-010-0068-y</a>","short":"H. Kim, B. Bickel, M. Groß, S. Choi, Science in China, Series F: Information Sciences 53 (2010) 911–919.","chicago":"Kim, Hyeonjoong, Bernd Bickel, Markus Groß, and Soomi Choi. “Subsurface Scattering Using Splat-Based Diffusion in Point-Based Rendering.” <i>Science in China, Series F: Information Sciences</i>. Springer, 2010. <a href=\"https://doi.org/10.1007/s11432-010-0068-y\">https://doi.org/10.1007/s11432-010-0068-y</a>."},"volume":53,"author":[{"full_name":"Kim, Hyeonjoong","first_name":"Hyeonjoong","last_name":"Kim"},{"last_name":"Bickel","first_name":"Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6511-9385","full_name":"Bernd Bickel"},{"full_name":"Groß, Markus S","first_name":"Markus","last_name":"Groß"},{"full_name":"Choi, Soomi","first_name":"Soomi","last_name":"Choi"}],"status":"public","month":"04","issue":"5","date_created":"2018-12-11T11:55:41Z","publication":"Science in China, Series F: Information Sciences","_id":"2096","quality_controlled":0,"title":"Subsurface scattering using splat-based diffusion in point-based rendering","doi":"10.1007/s11432-010-0068-y","fulldoi":"https://doi.org/10.1007/s11432-010-0068-y","day":"14","publication_status":"published"},{"publist_id":"4937","publisher":"ACM","type":"journal_article","date_published":"2010-07-01T00:00:00Z","year":"2010","acknowledgement":"Otaduy was supported in part by the Spanish Dept. of Science and Innovation (project TIN-2009-07942).","abstract":[{"lang":"eng","text":"This paper introduces a data-driven process for designing and fabricating materials with desired deformation behavior. Our process starts with measuring deformation properties of base materials. For each base material we acquire a set of example deformations, and we represent the material as a non-linear stress-strain relationship in a finite-element model. We have validated our material measurement process by comparing simulations of arbitrary stacks of base materials with measured deformations of fabricated material stacks. After material measurement, our process continues with designing stacked layers of base materials. We introduce an optimization process that finds the best combination of stacked layers that meets a user's criteria specified by example deformations. Our algorithm employs a number of strategies to prune poor solutions from the combinatorial search space. We demonstrate the complete process by designing and fabricating objects with complex heterogeneous materials using modern multi-material 3D printers."}],"citation":{"short":"B. Bickel, M. Bac̈Her, M. Otaduy, H. Lee, H. Pfister, M. Groß, W. Matusik, ACM Transactions on Graphics 29 (2010).","apa":"Bickel, B., Bac̈Her, M., Otaduy, M., Lee, H., Pfister, H., Groß, M., &#38; Matusik, W. (2010). Design and fabrication of materials with desired deformation behavior. <i>ACM Transactions on Graphics</i>. ACM. <a href=\"https://doi.org/10.1145/1778765.1778800\">https://doi.org/10.1145/1778765.1778800</a>","ista":"Bickel B, Bac̈Her M, Otaduy M, Lee H, Pfister H, Groß M, Matusik W. 2010. Design and fabrication of materials with desired deformation behavior. ACM Transactions on Graphics. 29(4).","mla":"Bickel, Bernd, et al. “Design and Fabrication of Materials with Desired Deformation Behavior.” <i>ACM Transactions on Graphics</i>, vol. 29, no. 4, ACM, 2010, doi:<a href=\"https://doi.org/10.1145/1778765.1778800\">10.1145/1778765.1778800</a>.","chicago":"Bickel, Bernd, Moritz Bac̈Her, Miguel Otaduy, Hyunho Lee, Hanspeter Pfister, Markus Groß, and Wojciech Matusik. “Design and Fabrication of Materials with Desired Deformation Behavior.” <i>ACM Transactions on Graphics</i>. ACM, 2010. <a href=\"https://doi.org/10.1145/1778765.1778800\">https://doi.org/10.1145/1778765.1778800</a>.","ieee":"B. Bickel <i>et al.</i>, “Design and fabrication of materials with desired deformation behavior,” <i>ACM Transactions on Graphics</i>, vol. 29, no. 4. ACM, 2010.","ama":"Bickel B, Bac̈Her M, Otaduy M, et al. Design and fabrication of materials with desired deformation behavior. <i>ACM Transactions on Graphics</i>. 2010;29(4). doi:<a href=\"https://doi.org/10.1145/1778765.1778800\">10.1145/1778765.1778800</a>"},"volume":29,"date_updated":"2021-01-12T06:55:17Z","intvolume":"        29","extern":1,"publication":"ACM Transactions on Graphics","title":"Design and fabrication of materials with desired deformation behavior","quality_controlled":0,"_id":"2097","month":"07","status":"public","author":[{"last_name":"Bickel","first_name":"Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","full_name":"Bernd Bickel","orcid":"0000-0001-6511-9385"},{"last_name":"Bac̈Her","first_name":"Moritz","full_name":"Bac̈her, Moritz"},{"last_name":"Otaduy","full_name":"Otaduy, Miguel A","first_name":"Miguel"},{"full_name":"Lee, Hyunho R","first_name":"Hyunho","last_name":"Lee"},{"last_name":"Pfister","first_name":"Hanspeter","full_name":"Pfister, Hanspeter"},{"last_name":"Groß","first_name":"Markus","full_name":"Groß, Markus S"},{"last_name":"Matusik","first_name":"Wojciech","full_name":"Matusik, Wojciech"}],"date_created":"2018-12-11T11:55:41Z","issue":"4","day":"01","fulldoi":"https://doi.org/10.1145/1778765.1778800","publication_status":"published","doi":"10.1145/1778765.1778800"},{"abstract":[{"text":"We develop a theory of Malliavin calculus for Banach space-valued random variables. Using radonifying operators instead of symmetric tensor products we extend the Wiener-Itô isometry to Banach spaces. In the white noise case we obtain two sided Lp-estimates for multiple stochastic integrals in arbitrary Banach spaces. It is shown that the Malliavin derivative is bounded on vector-valued Wiener-Itô chaoses. Our main tools are decoupling inequalities for vector-valued random variables. In the opposite direction we use Meyer's inequalities to give a new proof of a decoupling result for Gaussian chaoses in UMD Banach spaces.","lang":"eng"}],"page":"383 - 398","citation":{"ieee":"J. Maas, “Malliavin calculus and decoupling inequalities in Banach spaces,” <i>Journal of Mathematical Analysis and Applications</i>, vol. 363, no. 2. Academic Press, pp. 383–398, 2010.","ama":"Maas J. Malliavin calculus and decoupling inequalities in Banach spaces. <i>Journal of Mathematical Analysis and Applications</i>. 2010;363(2):383-398. doi:<a href=\"https://doi.org/10.1016/j.jmaa.2009.08.041\">10.1016/j.jmaa.2009.08.041</a>","mla":"Maas, Jan. “Malliavin Calculus and Decoupling Inequalities in Banach Spaces.” <i>Journal of Mathematical Analysis and Applications</i>, vol. 363, no. 2, Academic Press, 2010, pp. 383–98, doi:<a href=\"https://doi.org/10.1016/j.jmaa.2009.08.041\">10.1016/j.jmaa.2009.08.041</a>.","apa":"Maas, J. (2010). Malliavin calculus and decoupling inequalities in Banach spaces. <i>Journal of Mathematical Analysis and Applications</i>. Academic Press. <a href=\"https://doi.org/10.1016/j.jmaa.2009.08.041\">https://doi.org/10.1016/j.jmaa.2009.08.041</a>","short":"J. Maas, Journal of Mathematical Analysis and Applications 363 (2010) 383–398.","ista":"Maas J. 2010. Malliavin calculus and decoupling inequalities in Banach spaces. Journal of Mathematical Analysis and Applications. 363(2), 383–398.","chicago":"Maas, Jan. “Malliavin Calculus and Decoupling Inequalities in Banach Spaces.” <i>Journal of Mathematical Analysis and Applications</i>. Academic Press, 2010. <a href=\"https://doi.org/10.1016/j.jmaa.2009.08.041\">https://doi.org/10.1016/j.jmaa.2009.08.041</a>."},"volume":363,"date_updated":"2021-01-12T06:55:27Z","intvolume":"       363","extern":1,"publist_id":"4912","type":"journal_article","date_published":"2010-03-15T00:00:00Z","publisher":"Academic Press","acknowledgement":"The author acknowledges support by the ‘VIDI subsidie’ 639.032.201 of the Netherlands Organisation for Scientific Research (NWO) and the ARC Discovery Grant DP0558539.","year":"2010","fulldoi":"https://doi.org/10.1016/j.jmaa.2009.08.041","day":"15","publication_status":"published","oa":1,"doi":"10.1016/j.jmaa.2009.08.041","publication":"Journal of Mathematical Analysis and Applications","_id":"2124","quality_controlled":0,"title":"Malliavin calculus and decoupling inequalities in Banach spaces","author":[{"last_name":"Maas","first_name":"Jan","orcid":"0000-0002-0845-1338","full_name":"Jan Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87"}],"status":"public","month":"03","issue":"2","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/0801.2899"}],"date_created":"2018-12-11T11:55:51Z"},{"oa":1,"doi":"10.1039/B920899B ","publication_status":"published","day":"07","fulldoi":"https://doi.org/10.1039/B920899B ","date_created":"2018-12-11T11:56:15Z","issue":"5","main_file_link":[{"url":"http://arxiv.org/abs/0910.0952","open_access":"1"}],"status":"public","month":"02","author":[{"last_name":"Lemeshko","full_name":"Mikhail Lemeshko","orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","first_name":"Mikhail"},{"last_name":"Friedrich","full_name":"Friedrich, Břetislav","first_name":"Břetislav"}],"title":"An analytic model of the stereodynamics of rotationally inelastic molecular collisions","_id":"2194","quality_controlled":0,"publication":"Physical Chemistry Chemical Physics","extern":1,"date_updated":"2021-01-12T06:55:54Z","intvolume":"        12","volume":12,"citation":{"short":"M. Lemeshko, B. Friedrich, Physical Chemistry Chemical Physics 12 (2010) 1038–1041.","apa":"Lemeshko, M., &#38; Friedrich, B. (2010). An analytic model of the stereodynamics of rotationally inelastic molecular collisions. <i>Physical Chemistry Chemical Physics</i>. Royal Society of Chemistry. <a href=\"https://doi.org/10.1039/B920899B \">https://doi.org/10.1039/B920899B </a>","ista":"Lemeshko M, Friedrich B. 2010. An analytic model of the stereodynamics of rotationally inelastic molecular collisions. Physical Chemistry Chemical Physics. 12(5), 1038–1041.","mla":"Lemeshko, Mikhail, and Břetislav Friedrich. “An Analytic Model of the Stereodynamics of Rotationally Inelastic Molecular Collisions.” <i>Physical Chemistry Chemical Physics</i>, vol. 12, no. 5, Royal Society of Chemistry, 2010, pp. 1038–41, doi:<a href=\"https://doi.org/10.1039/B920899B \">10.1039/B920899B </a>.","chicago":"Lemeshko, Mikhail, and Břetislav Friedrich. “An Analytic Model of the Stereodynamics of Rotationally Inelastic Molecular Collisions.” <i>Physical Chemistry Chemical Physics</i>. Royal Society of Chemistry, 2010. <a href=\"https://doi.org/10.1039/B920899B \">https://doi.org/10.1039/B920899B </a>.","ieee":"M. Lemeshko and B. Friedrich, “An analytic model of the stereodynamics of rotationally inelastic molecular collisions,” <i>Physical Chemistry Chemical Physics</i>, vol. 12, no. 5. Royal Society of Chemistry, pp. 1038–1041, 2010.","ama":"Lemeshko M, Friedrich B. An analytic model of the stereodynamics of rotationally inelastic molecular collisions. <i>Physical Chemistry Chemical Physics</i>. 2010;12(5):1038-1041. doi:<a href=\"https://doi.org/10.1039/B920899B \">10.1039/B920899B </a>"},"page":"1038 - 1041","abstract":[{"text":"We develop an analytic model of vector correlations in rotationally inelastic atom-diatom collisions and test it against the much examined Ar-NO (X2Π) system. Based on the Fraunhofer scattering of matter waves, the model furnishes complex scattering amplitudes needed to evaluate the polarization moments characterizing the quantum stereodynamics. The analytic polarization moments are found to be in an excellent agreement with experimental results and with close-coupling calculations available at thermal energies. The model reveals that the stereodynamics is governed by diffraction from the repulsive core of the Ar-NO potential, which can be characterized by a single Legendre moment.","lang":"eng"}],"year":"2010","publisher":"Royal Society of Chemistry","type":"journal_article","date_published":"2010-02-07T00:00:00Z","publist_id":"4780"},{"fulldoi":"https://doi.org/10.1063/1.3386530","day":"28","publication_status":"published","doi":"10.1063/1.3386530","oa":1,"publication":"Journal of Chemical Physics","quality_controlled":0,"_id":"2195","title":"Communications: When diffraction rules the stereodynamics of rotationally inelastic collisions","author":[{"last_name":"Lemeshko","first_name":"Mikhail","orcid":"0000-0002-6990-7802","full_name":"Mikhail Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Jambrina","first_name":"Pablo","full_name":"Jambrina, Pablo G"},{"first_name":"Marcelo","full_name":"De Miranda, Marcelo P","last_name":"De Miranda"},{"last_name":"Friedrich","first_name":"Břetislav","full_name":"Friedrich, Břetislav"}],"month":"04","status":"public","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1002.1572"}],"issue":"16","date_created":"2018-12-11T11:56:16Z","abstract":[{"text":"Following upon our recent work on vector correlations in the Ar-NO collisions [Lemeshko and Friedrich, Phys. Chem. Chem. Phys. 12, 1038 (2010)], we compare model results with close-coupling calculations for a range of channels and collision energies for the He-NO system. The striking agreement between the model and exact polarization moments indicates that the stereodynamics of rotationally inelastic atom-molecule collisions at thermal energies is governed by diffraction of matter waves from a two-dimensional repulsive core of the atom-molecule potential. Furthermore, the model polarization moments characterizing the He-NO, He- O2, He-OH, and He-CaH stereodynamics are found to coalesce into a single, distinctive pattern, which can serve as a &quot;fingerprint&quot; to identify diffraction-driven stereodynamics in future work. ","lang":"eng"}],"volume":132,"citation":{"mla":"Lemeshko, Mikhail, et al. “Communications: When Diffraction Rules the Stereodynamics of Rotationally Inelastic Collisions.” <i>Journal of Chemical Physics</i>, vol. 132, no. 16, American Institute of Physics, 2010, doi:<a href=\"https://doi.org/10.1063/1.3386530\">10.1063/1.3386530</a>.","ista":"Lemeshko M, Jambrina P, De Miranda M, Friedrich B. 2010. Communications: When diffraction rules the stereodynamics of rotationally inelastic collisions. Journal of Chemical Physics. 132(16).","short":"M. Lemeshko, P. Jambrina, M. De Miranda, B. Friedrich, Journal of Chemical Physics 132 (2010).","apa":"Lemeshko, M., Jambrina, P., De Miranda, M., &#38; Friedrich, B. (2010). Communications: When diffraction rules the stereodynamics of rotationally inelastic collisions. <i>Journal of Chemical Physics</i>. American Institute of Physics. <a href=\"https://doi.org/10.1063/1.3386530\">https://doi.org/10.1063/1.3386530</a>","chicago":"Lemeshko, Mikhail, Pablo Jambrina, Marcelo De Miranda, and Břetislav Friedrich. “Communications: When Diffraction Rules the Stereodynamics of Rotationally Inelastic Collisions.” <i>Journal of Chemical Physics</i>. American Institute of Physics, 2010. <a href=\"https://doi.org/10.1063/1.3386530\">https://doi.org/10.1063/1.3386530</a>.","ieee":"M. Lemeshko, P. Jambrina, M. De Miranda, and B. Friedrich, “Communications: When diffraction rules the stereodynamics of rotationally inelastic collisions,” <i>Journal of Chemical Physics</i>, vol. 132, no. 16. American Institute of Physics, 2010.","ama":"Lemeshko M, Jambrina P, De Miranda M, Friedrich B. Communications: When diffraction rules the stereodynamics of rotationally inelastic collisions. <i>Journal of Chemical Physics</i>. 2010;132(16). doi:<a href=\"https://doi.org/10.1063/1.3386530\">10.1063/1.3386530</a>"},"intvolume":"       132","date_updated":"2021-01-12T06:55:54Z","extern":1,"publist_id":"4779","date_published":"2010-04-28T00:00:00Z","type":"journal_article","publisher":"American Institute of Physics","acknowledgement":"Financial support of the Spanish Ministry of Science and Innovation (Grant No. CTQ2008-02578) is gratefully acknowledged.","year":"2010"},{"issue":"36","main_file_link":[{"url":"http://arxiv.org/abs/1004.1742","open_access":"1"}],"date_created":"2018-12-11T11:56:16Z","author":[{"first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","full_name":"Mikhail Lemeshko","last_name":"Lemeshko"},{"last_name":"Friedrich","full_name":"Friedrich, Břetislav","first_name":"Břetislav"}],"status":"public","month":"09","_id":"2196","quality_controlled":0,"title":"Fine-tuning molecular energy levels by nonresonant laser pulses","publication":"Journal of Physical Chemistry A","doi":"10.1021/jp1032299","oa":1,"publication_status":"published","fulldoi":"https://doi.org/10.1021/jp1032299","day":"16","year":"2010","type":"journal_article","date_published":"2010-09-16T00:00:00Z","publisher":"American Chemical Society","publist_id":"4777","extern":1,"intvolume":"       114","date_updated":"2021-01-12T06:55:55Z","page":"9848 - 9854","citation":{"short":"M. Lemeshko, B. Friedrich, Journal of Physical Chemistry A 114 (2010) 9848–9854.","ista":"Lemeshko M, Friedrich B. 2010. Fine-tuning molecular energy levels by nonresonant laser pulses. Journal of Physical Chemistry A. 114(36), 9848–9854.","apa":"Lemeshko, M., &#38; Friedrich, B. (2010). Fine-tuning molecular energy levels by nonresonant laser pulses. <i>Journal of Physical Chemistry A</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/jp1032299\">https://doi.org/10.1021/jp1032299</a>","mla":"Lemeshko, Mikhail, and Břetislav Friedrich. “Fine-Tuning Molecular Energy Levels by Nonresonant Laser Pulses.” <i>Journal of Physical Chemistry A</i>, vol. 114, no. 36, American Chemical Society, 2010, pp. 9848–54, doi:<a href=\"https://doi.org/10.1021/jp1032299\">10.1021/jp1032299</a>.","chicago":"Lemeshko, Mikhail, and Břetislav Friedrich. “Fine-Tuning Molecular Energy Levels by Nonresonant Laser Pulses.” <i>Journal of Physical Chemistry A</i>. American Chemical Society, 2010. <a href=\"https://doi.org/10.1021/jp1032299\">https://doi.org/10.1021/jp1032299</a>.","ama":"Lemeshko M, Friedrich B. Fine-tuning molecular energy levels by nonresonant laser pulses. <i>Journal of Physical Chemistry A</i>. 2010;114(36):9848-9854. doi:<a href=\"https://doi.org/10.1021/jp1032299\">10.1021/jp1032299</a>","ieee":"M. Lemeshko and B. Friedrich, “Fine-tuning molecular energy levels by nonresonant laser pulses,” <i>Journal of Physical Chemistry A</i>, vol. 114, no. 36. American Chemical Society, pp. 9848–9854, 2010."},"volume":114,"abstract":[{"text":"We evaluate the shifts imparted to vibrational and rotational levels of a linear molecule by a nonresonant laser field at intensities of up to 10 12 W/cm2. Both types of shift are found to be either positive or negative, depending on the initial rotational state acted upon by the field. An adiabatic field-molecule interaction imparts a rotational energy shift which is negative and exceeds the concomitant positive vibrational shift by a few orders of magnitude. The rovibrational states are thus pushed downward in such a field. A nonresonant pulsed laser field that interacts nonadiabatically with the molecule is found to impart rotational and vibrational shifts of the same order of magnitude. The nonadiabatic energy transfer occurs most readily at a pulse duration which amounts to about a tenth of the molecule's rotational period and vanishes when the sudden regime is attained for shorter pulses. We applied our treatment to the much-studied 87Rb2 molecule in the last bound vibrational levels of its lowest singlet and triplet electronic states. Our calculations indicate that 15 and 1.5 ns laser pulses of an intensity in excess of 5 × 109 W/cm2 are capable of dissociating the molecule due to the vibrational shift. Lesser shifts can be used to fine-tune the rovibrational levels and thereby affect collisional resonances by the nonresonant light. The energy shifts due to laser intensities of 109 W/cm2 may be discernible spectroscopically, with a 10 MHz resolution.","lang":"eng"}]},{"date_updated":"2021-01-12T06:55:55Z","intvolume":"        82","extern":1,"abstract":[{"lang":"eng","text":"We present an analytic model of the refractive index for matter waves propagating through atomic or molecular gases. The model, which combines the Wentzel-Kramers-Brillouin (WKB) treatment of the long-range attraction with the Fraunhofer model treatment of the short-range repulsion, furnishes a refractive index in compelling agreement with recent experiments of Jacquey [Phys. Rev. Lett.PRLTAO0031-900710.1103/PhysRevLett.98.240405 98, 240405 (2007)] on Li atom matter waves passing through dilute noble gases. We show that the diffractive contribution, which arises from scattering by a two-dimensional &quot;hard core&quot; of the potential, is essential for obtaining a correct imaginary part of the refractive index."}],"citation":{"ama":"Lemeshko M, Friedrich B. Multiple scattering of matter waves: An analytic model of the refractive index for atomic and molecular gases. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2010;82(2). doi:<a href=\"https://doi.org/10.1103/PhysRevA.82.022711\">10.1103/PhysRevA.82.022711</a>","ieee":"M. Lemeshko and B. Friedrich, “Multiple scattering of matter waves: An analytic model of the refractive index for atomic and molecular gases,” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 82, no. 2. American Physical Society, 2010.","ista":"Lemeshko M, Friedrich B. 2010. Multiple scattering of matter waves: An analytic model of the refractive index for atomic and molecular gases. Physical Review A - Atomic, Molecular, and Optical Physics. 82(2).","apa":"Lemeshko, M., &#38; Friedrich, B. (2010). Multiple scattering of matter waves: An analytic model of the refractive index for atomic and molecular gases. <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.82.022711\">https://doi.org/10.1103/PhysRevA.82.022711</a>","short":"M. Lemeshko, B. Friedrich, Physical Review A - Atomic, Molecular, and Optical Physics 82 (2010).","mla":"Lemeshko, Mikhail, and Břetislav Friedrich. “Multiple Scattering of Matter Waves: An Analytic Model of the Refractive Index for Atomic and Molecular Gases.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 82, no. 2, American Physical Society, 2010, doi:<a href=\"https://doi.org/10.1103/PhysRevA.82.022711\">10.1103/PhysRevA.82.022711</a>.","chicago":"Lemeshko, Mikhail, and Břetislav Friedrich. “Multiple Scattering of Matter Waves: An Analytic Model of the Refractive Index for Atomic and Molecular Gases.” <i>Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2010. <a href=\"https://doi.org/10.1103/PhysRevA.82.022711\">https://doi.org/10.1103/PhysRevA.82.022711</a>."},"volume":82,"publisher":"American Physical Society","date_published":"2010-08-18T00:00:00Z","type":"journal_article","year":"2010","publist_id":"4778","oa":1,"doi":"10.1103/PhysRevA.82.022711","day":"18","fulldoi":"https://doi.org/10.1103/PhysRevA.82.022711","publication_status":"published","month":"08","status":"public","author":[{"first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Mikhail Lemeshko","orcid":"0000-0002-6990-7802","last_name":"Lemeshko"},{"first_name":"Břetislav","full_name":"Friedrich, Břetislav","last_name":"Friedrich"}],"date_created":"2018-12-11T11:56:16Z","issue":"2","main_file_link":[{"url":"http://arxiv.org/abs/1003.0854","open_access":"1"}],"publication":"Physical Review A - Atomic, Molecular, and Optical Physics","title":"Multiple scattering of matter waves: An analytic model of the refractive index for atomic and molecular gases","quality_controlled":0,"_id":"2197"},{"date_published":"2010-10-15T00:00:00Z","scopus_import":"1","citation":{"ama":"Klajn R. Immobilized azobenzenes for the construction of photoresponsive materials. <i>Pure and Applied Chemistry</i>. 2010;82(12):2247-2279. doi:<a href=\"https://doi.org/10.1351/pac-con-10-09-04\">10.1351/pac-con-10-09-04</a>","ieee":"R. Klajn, “Immobilized azobenzenes for the construction of photoresponsive materials,” <i>Pure and Applied Chemistry</i>, vol. 82, no. 12. De Gruyter, pp. 2247–2279, 2010.","chicago":"Klajn, Rafal. “Immobilized Azobenzenes for the Construction of Photoresponsive Materials.” <i>Pure and Applied Chemistry</i>. De Gruyter, 2010. <a href=\"https://doi.org/10.1351/pac-con-10-09-04\">https://doi.org/10.1351/pac-con-10-09-04</a>.","mla":"Klajn, Rafal. “Immobilized Azobenzenes for the Construction of Photoresponsive Materials.” <i>Pure and Applied Chemistry</i>, vol. 82, no. 12, De Gruyter, 2010, pp. 2247–79, doi:<a href=\"https://doi.org/10.1351/pac-con-10-09-04\">10.1351/pac-con-10-09-04</a>.","ista":"Klajn R. 2010. Immobilized azobenzenes for the construction of photoresponsive materials. Pure and Applied Chemistry. 82(12), 2247–2279.","apa":"Klajn, R. (2010). Immobilized azobenzenes for the construction of photoresponsive materials. <i>Pure and Applied Chemistry</i>. De Gruyter. <a href=\"https://doi.org/10.1351/pac-con-10-09-04\">https://doi.org/10.1351/pac-con-10-09-04</a>","short":"R. Klajn, Pure and Applied Chemistry 82 (2010) 2247–2279."},"month":"10","status":"public","author":[{"full_name":"Klajn, Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","last_name":"Klajn"}],"issue":"12","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1351/pac-con-10-09-04"}],"publication":"Pure and Applied Chemistry","quality_controlled":"1","keyword":["General Chemical Engineering","General Chemistry"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","doi":"10.1351/pac-con-10-09-04","day":"15","article_type":"original","publisher":"De Gruyter","type":"journal_article","year":"2010","language":[{"iso":"eng"}],"intvolume":"        82","date_updated":"2024-10-14T12:21:48Z","extern":"1","abstract":[{"text":"The immobilization of molecular switches onto inorganic supports has recently become a hot topic as it can give rise to novel hybrid materials in which the properties of the two components are mutually enhanced. Even more attractive is the concept of “transferring” the switchable characteristics of single layers of organic molecules onto the underlying inorganic components, rendering them responsive to external stimuli as well. Of the various molecular switches studied, azobenzene (AB) has arguably attracted most attention due to its simple molecular structure, and because its “trigger” (light) is a noninvasive one, it can be delivered instantaneously, and into a precise location. In order to fully realize its potential, however, it is necessary to immobilize AB onto solid supports. It is the goal of this manuscript to comprehensively yet concisely review such hybrid systems which comprise AB forming well-defined self-assembled monolayers (SAMs) on planar and curved (colloidal and nanoporous) inorganic surfaces. I discuss methods to immobilize AB derivatives onto surfaces, strategies to ensure efficient AB isomerization, ways to monitor the switching process, properties of these switchable hybrid materials, and, last but not least, their emerging applications.","lang":"eng"}],"volume":82,"page":"2247-2279","publication_identifier":{"eissn":["1365-3075"],"issn":["0033-4545"]},"date_created":"2023-08-01T09:48:11Z","title":"Immobilized azobenzenes for the construction of photoresponsive materials","_id":"13409","article_processing_charge":"No","oa":1,"oa_version":"Published Version","fulldoi":"https://doi.org/10.1351/pac-con-10-09-04","publication_status":"published"},{"_id":"13410","title":"Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory","date_created":"2023-08-01T09:48:27Z","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"publication_status":"published","pmid":1,"fulldoi":"https://doi.org/10.1021/ja9102327","oa_version":"None","article_processing_charge":"No","language":[{"iso":"eng"}],"year":"2010","type":"journal_article","publisher":"American Chemical Society","page":"4310-4320","volume":132,"abstract":[{"lang":"eng","text":"A range (Au, Pt, Pd) of metal nanoparticles (MNPs) has been prepared and functionalized with (a) redox-active stalks containing tetrathiafulvalene (TTF) units, (b) [2]pseudorotaxanes formed between these stalks and cyclobis(paraquat-p-phenylene) (CBPQT4+) rings, and (c) bistable [2]rotaxane molecules where the dumbbell component contains a 1,5-dioxynaphthalene (DNP) unit, as well as a TTF unit, encircled by a CBPQT4+ ring. It transpires that the molecules present in (a) and (c) and the supermolecules described in (b) retain their switching characteristics, previously observed in solution, when they are immobilized onto MNPs. Moreover, their oxidation potentials depend on the fraction, χ, of the molecules or supermolecules on the surface of the nanoparticles. A variation in χ affects the oxidation potentials of the TTF units to the extent that switching can be subjected to fine tuning as a result. Specifically, increasing χ results in positive shifts (i) in the oxidation potentials of the TTF unit in (a)−(c) and (ii) the reduction potentials of the CBPQT4+ rings in (c). These shifts can be attributed to an increase in the electrostatic potential surrounding the MNPs. Both the magnitude and the direction of these shifts are reproduced by a model, based on the Poisson−Boltzmann equation coupled with charge-regulating boundary conditions. Furthermore, the kinetics of relaxation from the metastable state coconformation (MSCC) to the ground-state coconformation (GSCC) of the bistable [2]rotaxane molecules also depends on χ, as well as on the nanoparticle diameter. Increasing either of these parameters accelerates the rate of relaxation from the MSCC to the GSCC. This rate is a function of (i) the activation energy for the relaxation process associated with the bistable [2]rotaxane molecules in solution and (ii) the electrostatic potential surrounding the MNPs. The electrostatic potential depends on (i) the diameter of the MNPs, (ii) the amount of the bistable [2]rotaxane molecules on the surface of the MNPs, and (iii) the equilibrium distribution of the CBPQT4+ rings between the DNP and TTF recognition sites in the GSCC. This electrostatic potential has also been quantified using the Poisson−Boltzmann equation, leading to faithful estimates of the rate constants."}],"extern":"1","intvolume":"       132","date_updated":"2023-08-08T08:00:31Z","quality_controlled":"1","publication":"Journal of the American Chemical Society","issue":"12","author":[{"last_name":"Coskun","first_name":"Ali","full_name":"Coskun, Ali"},{"full_name":"Wesson, Paul J.","first_name":"Paul J.","last_name":"Wesson"},{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal","first_name":"Rafal","last_name":"Klajn"},{"last_name":"Trabolsi","full_name":"Trabolsi, Ali","first_name":"Ali"},{"full_name":"Fang, Lei","first_name":"Lei","last_name":"Fang"},{"last_name":"Olson","full_name":"Olson, Mark A.","first_name":"Mark A."},{"full_name":"Dey, Sanjeev K.","first_name":"Sanjeev K.","last_name":"Dey"},{"last_name":"Grzybowski","full_name":"Grzybowski, Bartosz A.","first_name":"Bartosz A."},{"last_name":"Stoddart","full_name":"Stoddart, J. Fraser","first_name":"J. Fraser"}],"month":"03","status":"public","article_type":"original","day":"31","doi":"10.1021/ja9102327","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["Colloid and Surface Chemistry","Biochemistry","General Chemistry","Catalysis"],"external_id":{"pmid":["20218598"]},"date_published":"2010-03-31T00:00:00Z","citation":{"mla":"Coskun, Ali, et al. “Molecular-Mechanical Switching at the Nanoparticle−solvent Interface: Practice and Theory.” <i>Journal of the American Chemical Society</i>, vol. 132, no. 12, American Chemical Society, 2010, pp. 4310–20, doi:<a href=\"https://doi.org/10.1021/ja9102327\">10.1021/ja9102327</a>.","short":"A. Coskun, P.J. Wesson, R. Klajn, A. Trabolsi, L. Fang, M.A. Olson, S.K. Dey, B.A. Grzybowski, J.F. Stoddart, Journal of the American Chemical Society 132 (2010) 4310–4320.","apa":"Coskun, A., Wesson, P. J., Klajn, R., Trabolsi, A., Fang, L., Olson, M. A., … Stoddart, J. F. (2010). Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory. <i>Journal of the American Chemical Society</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/ja9102327\">https://doi.org/10.1021/ja9102327</a>","ista":"Coskun A, Wesson PJ, Klajn R, Trabolsi A, Fang L, Olson MA, Dey SK, Grzybowski BA, Stoddart JF. 2010. Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory. Journal of the American Chemical Society. 132(12), 4310–4320.","chicago":"Coskun, Ali, Paul J. Wesson, Rafal Klajn, Ali Trabolsi, Lei Fang, Mark A. Olson, Sanjeev K. Dey, Bartosz A. Grzybowski, and J. Fraser Stoddart. “Molecular-Mechanical Switching at the Nanoparticle−solvent Interface: Practice and Theory.” <i>Journal of the American Chemical Society</i>. American Chemical Society, 2010. <a href=\"https://doi.org/10.1021/ja9102327\">https://doi.org/10.1021/ja9102327</a>.","ama":"Coskun A, Wesson PJ, Klajn R, et al. Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory. <i>Journal of the American Chemical Society</i>. 2010;132(12):4310-4320. doi:<a href=\"https://doi.org/10.1021/ja9102327\">10.1021/ja9102327</a>","ieee":"A. Coskun <i>et al.</i>, “Molecular-mechanical switching at the nanoparticle−solvent interface: Practice and theory,” <i>Journal of the American Chemical Society</i>, vol. 132, no. 12. American Chemical Society, pp. 4310–4320, 2010."},"scopus_import":"1"},{"doi":"10.1002/smll.200902272","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","keyword":["Biomaterials","Biotechnology","General Materials Science","General Chemistry"],"day":"05","article_type":"original","issue":"13","status":"public","month":"07","author":[{"first_name":"Rafal","full_name":"Klajn, Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","last_name":"Klajn"},{"last_name":"Browne","first_name":"Kevin P.","full_name":"Browne, Kevin P."},{"full_name":"Soh, Siowling","first_name":"Siowling","last_name":"Soh"},{"last_name":"Grzybowski","full_name":"Grzybowski, Bartosz A.","first_name":"Bartosz A."}],"quality_controlled":"1","publication":"Small","scopus_import":"1","citation":{"ieee":"R. Klajn, K. P. Browne, S. Soh, and B. A. Grzybowski, “Nanoparticles that ‘remember’ temperature,” <i>Small</i>, vol. 6, no. 13. Wiley, pp. 1385–1387, 2010.","ama":"Klajn R, Browne KP, Soh S, Grzybowski BA. Nanoparticles that “remember” temperature. <i>Small</i>. 2010;6(13):1385-1387. doi:<a href=\"https://doi.org/10.1002/smll.200902272\">10.1002/smll.200902272</a>","short":"R. Klajn, K.P. Browne, S. Soh, B.A. Grzybowski, Small 6 (2010) 1385–1387.","ista":"Klajn R, Browne KP, Soh S, Grzybowski BA. 2010. Nanoparticles that “remember” temperature. Small. 6(13), 1385–1387.","apa":"Klajn, R., Browne, K. P., Soh, S., &#38; Grzybowski, B. A. (2010). Nanoparticles that “remember” temperature. <i>Small</i>. Wiley. <a href=\"https://doi.org/10.1002/smll.200902272\">https://doi.org/10.1002/smll.200902272</a>","mla":"Klajn, Rafal, et al. “Nanoparticles That ‘Remember’ Temperature.” <i>Small</i>, vol. 6, no. 13, Wiley, 2010, pp. 1385–87, doi:<a href=\"https://doi.org/10.1002/smll.200902272\">10.1002/smll.200902272</a>.","chicago":"Klajn, Rafal, Kevin P. Browne, Siowling Soh, and Bartosz A. Grzybowski. “Nanoparticles That ‘Remember’ Temperature.” <i>Small</i>. Wiley, 2010. <a href=\"https://doi.org/10.1002/smll.200902272\">https://doi.org/10.1002/smll.200902272</a>."},"date_published":"2010-07-05T00:00:00Z","external_id":{"pmid":["20521264"]},"article_processing_charge":"No","publication_status":"published","oa_version":"None","fulldoi":"https://doi.org/10.1002/smll.200902272","pmid":1,"date_created":"2023-08-01T09:48:38Z","publication_identifier":{"issn":["1613-6810"],"eissn":["1613-6829"]},"title":"Nanoparticles that “remember” temperature","_id":"13411","extern":"1","date_updated":"2023-08-08T08:15:25Z","intvolume":"         6","volume":6,"page":"1385-1387","abstract":[{"text":"Photoresponsive gold nanoparticles dispersed in a solid/frozen matrix provide a basis for sensors that “remember” whether the sample has ever exceeded the melting temperature of the matrix. The operation of these sensors rests on the ability to photoinduce metastable electric dipoles on NP surfaces – upon melting, these dipoles drive NP aggregation, precipitation, and crosslinking. These events are manifested by a pronounced color change.","lang":"eng"}],"year":"2010","language":[{"iso":"eng"}],"publisher":"Wiley","type":"journal_article"}]