---
OA_place: publisher
OA_type: gold
_id: '22002'
abstract:
- lang: eng
  text: Topological simplification is the process of reducing complexity of a function
    while maintaining its essential features. Its goal is to find a new filter function,
    which reorders cells of the input complex in a way which eliminates some persistent
    homological features, without affecting the rest. We present a new approach to
    simplification based on the concept of forbidden regions and combinatorial dynamics.
    It allows us to reorder and cancel critical values, whose cancellation is not
    possible using existing methods because they are not consecutive in the total
    order. Each such cancellation takes O(c⋅n) time in the worst case, where c is
    the number of birth-death pairs and n is the size of the input complex.
acknowledgement: "Jakub Leśkiewicz wants to thank his supervisor, Prof. Marian Mrozek,
  forscientific guidance, patience, and opportunity to delay the rest of his duties
  while writing this work.\r\nThe author also extends thanks to his entire family,
  to Zuzanna Świątek, and to Mikołaj Kardyś,\r\nBEng, MSc, for providing meals during
  the most intensive periods of work. Jakub Leśkiewicz: The research was partially
  funded by the Polish National Science Center under Opus Grant No. 2019/35/B/ST1/00874
  and Opus Grant 2025/57/B/ST1/00550. Bartosz Furmanek: The research was partially
  funded by the Polish National Science Center under Opus Grant No. 2019/35/B/ST1/00874
  and Opus Grant 2025/57/B/ST1/00550. Michał Lipiński: This project has received funding
  from the European Union’s Horizon 2020 research and innovation programme under the
  Marie Skłodowska-Curie Grant Agreement No. 101034413. \r\nDmitriy Morozov: This
  work was supported in part by the U.S. Department of Energy, Office\r\nof Science,
  Office of Advanced Scientific Computing Research, under Contract No. DE-AC02-\r\n05CH11231."
alternative_title:
- LIPIcs
article_number: 72:1-72:17
article_processing_charge: No
arxiv: 1
author:
- first_name: Jakub
  full_name: Leśkiewicz, Jakub
  last_name: Leśkiewicz
- first_name: Bartosz
  full_name: Furmanek, Bartosz
  last_name: Furmanek
- first_name: Michał
  full_name: Lipiński, Michał
  id: dfffb474-4317-11ee-8f5c-fe3fc95a425e
  last_name: Lipiński
  orcid: 0000-0001-9789-9750
- first_name: Dmitriy
  full_name: Morozov, Dmitriy
  last_name: Morozov
citation:
  ama: 'Leśkiewicz J, Furmanek B, Lipiński M, Morozov D. Topological simplification
    guided by forbidden regions. In: <i>42nd International Symposium on Computational
    Geometry</i>. Vol 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2026.
    doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2026.72">10.4230/LIPIcs.SoCG.2026.72</a>'
  apa: 'Leśkiewicz, J., Furmanek, B., Lipiński, M., &#38; Morozov, D. (2026). Topological
    simplification guided by forbidden regions. In <i>42nd International Symposium
    on Computational Geometry</i> (Vol. 367). New Brunswick, NJ, United States: Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2026.72">https://doi.org/10.4230/LIPIcs.SoCG.2026.72</a>'
  chicago: Leśkiewicz, Jakub, Bartosz Furmanek, Michał Lipiński, and Dmitriy Morozov.
    “Topological Simplification Guided by Forbidden Regions.” In <i>42nd International
    Symposium on Computational Geometry</i>, Vol. 367. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2026. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2026.72">https://doi.org/10.4230/LIPIcs.SoCG.2026.72</a>.
  ieee: J. Leśkiewicz, B. Furmanek, M. Lipiński, and D. Morozov, “Topological simplification
    guided by forbidden regions,” in <i>42nd International Symposium on Computational
    Geometry</i>, New Brunswick, NJ, United States, 2026, vol. 367.
  ista: 'Leśkiewicz J, Furmanek B, Lipiński M, Morozov D. 2026. Topological simplification
    guided by forbidden regions. 42nd International Symposium on Computational Geometry.
    SoCG: Symposium on Computational Geometry, LIPIcs, vol. 367, 72:1-72:17.'
  mla: Leśkiewicz, Jakub, et al. “Topological Simplification Guided by Forbidden Regions.”
    <i>42nd International Symposium on Computational Geometry</i>, vol. 367, 72:1-72:17,
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026, doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2026.72">10.4230/LIPIcs.SoCG.2026.72</a>.
  short: J. Leśkiewicz, B. Furmanek, M. Lipiński, D. Morozov, in:, 42nd International
    Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2026.
conference:
  end_date: 2026-06-05
  location: New Brunswick, NJ, United States
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2026-06-02
corr_author: '1'
das_tickbox: '0'
date_created: 2026-06-14T22:01:43Z
date_published: 2026-05-27T00:00:00Z
date_updated: 2026-06-22T07:45:36Z
day: '27'
ddc:
- '500'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2026.72
ec_funded: 1
external_id:
  arxiv:
  - '2603.16416'
file:
- access_level: open_access
  checksum: 3be91c06fdf716c8735b6af64a09a921
  content_type: application/pdf
  creator: dernst
  date_created: 2026-06-22T07:39:21Z
  date_updated: 2026-06-22T07:39:21Z
  file_id: '22110'
  file_name: 2026_LIPIcSSoCG_Leskiewicz.pdf
  file_size: 2052749
  relation: main_file
  success: 1
file_date_updated: 2026-06-22T07:39:21Z
has_accepted_license: '1'
intvolume: '       367'
keyword:
- persistent homology
- topological simplification
- depth posets
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: 42nd International Symposium on Computational Geometry
publication_identifier:
  eissn:
  - 1868-8969
  isbn:
  - '9783959774185'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Topological simplification guided by forbidden regions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 367
year: '2026'
...
---
OA_type: closed access
_id: '21996'
abstract:
- lang: eng
  text: In this issue of Cell Host & Microbe, Osterman et al. discover aRES,1 a new
    family of bacterial immune proteins that deplete cellular NAD+, generating cleavage
    products that cannot be utilized by canonical phage NAD+ regeneration pathways.
    They identify the invader-specific trigger for aRES and characterize two distinct
    evolutionary countermeasures employed by phages to resist aRES.
acknowledgement: This work was supported by the Austrian Science Fund (FWF) (10.55776/PAT1617625).
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
  full_name: Williams-Jones, Daniel
  id: 128eaab9-b327-11f0-bdbe-e02d5abac73b
  last_name: Williams-Jones
- first_name: Jack Peter Kelly
  full_name: Bravo, Jack Peter Kelly
  id: 96aecfa5-8931-11ee-af30-aa6a5d6eee0e
  last_name: Bravo
  orcid: 0000-0003-0456-0753
citation:
  ama: 'Williams-Jones D, Bravo JPK. NAD to the bone: How bacteria put phages under
    aRES-t … and how phages fight back. <i>Cell Host &#38; Microbe</i>. 2026;34(6):978-980.
    doi:<a href="https://doi.org/10.1016/j.chom.2026.05.013">10.1016/j.chom.2026.05.013</a>'
  apa: 'Williams-Jones, D., &#38; Bravo, J. P. K. (2026). NAD to the bone: How bacteria
    put phages under aRES-t … and how phages fight back. <i>Cell Host &#38; Microbe</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.chom.2026.05.013">https://doi.org/10.1016/j.chom.2026.05.013</a>'
  chicago: 'Williams-Jones, Daniel, and Jack Peter Kelly Bravo. “NAD to the Bone:
    How Bacteria Put Phages under ARES-t … and How Phages Fight Back.” <i>Cell Host
    &#38; Microbe</i>. Elsevier, 2026. <a href="https://doi.org/10.1016/j.chom.2026.05.013">https://doi.org/10.1016/j.chom.2026.05.013</a>.'
  ieee: 'D. Williams-Jones and J. P. K. Bravo, “NAD to the bone: How bacteria put
    phages under aRES-t … and how phages fight back,” <i>Cell Host &#38; Microbe</i>,
    vol. 34, no. 6. Elsevier, pp. 978–980, 2026.'
  ista: 'Williams-Jones D, Bravo JPK. 2026. NAD to the bone: How bacteria put phages
    under aRES-t … and how phages fight back. Cell Host &#38; Microbe. 34(6), 978–980.'
  mla: 'Williams-Jones, Daniel, and Jack Peter Kelly Bravo. “NAD to the Bone: How
    Bacteria Put Phages under ARES-t … and How Phages Fight Back.” <i>Cell Host &#38;
    Microbe</i>, vol. 34, no. 6, Elsevier, 2026, pp. 978–80, doi:<a href="https://doi.org/10.1016/j.chom.2026.05.013">10.1016/j.chom.2026.05.013</a>.'
  short: D. Williams-Jones, J.P.K. Bravo, Cell Host &#38; Microbe 34 (2026) 978–980.
corr_author: '1'
das_tickbox: '1'
date_created: 2026-06-14T22:01:42Z
date_published: 2026-06-10T00:00:00Z
date_updated: 2026-06-22T07:11:28Z
day: '10'
department:
- _id: JaBr
doi: 10.1016/j.chom.2026.05.013
external_id:
  pmid:
  - '42269584'
intvolume: '        34'
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: 978-980
pmid: 1
publication: Cell Host & Microbe
publication_identifier:
  eissn:
  - 1934-6069
  issn:
  - 1931-3128
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'NAD to the bone: How bacteria put phages under aRES-t … and how phages fight
  back'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2026'
...
---
OA_place: publisher
_id: '21651'
abstract:
- lang: eng
  text: "Blockchains enable distributed consensus in permissionless settings, where
    participants\r\nare unknown, dynamically changing, and do not trust each other.
    While Bitcoin,\r\nbased on Proof-of-Work (PoW), was the first protocol in this
    model, significant\r\nresearch has focused on permissionless protocols using alternative
    physical resources,\r\nspecifically Proof-of-Space (PoSpace) and Verifiable Delay
    Functions (VDFs). This\r\nthesis investigates the theoretical limits and design
    space of longest-chain protocols in\r\nthe fully permissionless and dynamically
    available settings using these three resources.\r\nFirst, we address the feasibility
    of blockchains relying solely on storage as a resource.\r\nWe prove a fundamental
    impossibility result: there exists no secure longest-chain\r\nprotocol based exclusively
    on Proof-of-Space in the fully permissionless or dynamically\r\navailable settings.
    Further, we quantify the adversarial capabilities required to execute\r\na double-spend
    attack. Our result formally justifies the necessity of coupling PoSpace\r\nwith
    time-dependent primitives (such as VDFs) or to move to less permissive settings\r\n(quasi-permissionless
    or permissioned) to ensure security.\r\nSecond, we generalize Nakamoto-like heaviest
    chain consensus to protocols utilizing\r\ncombinations of multiple physical resources.
    We analyze chain selection rules governed\r\nby a weight function Γ(S, V,W), which
    assigns weight to blocks based on recorded\r\nSpace (S), VDF speed (V ), and Work
    (W). We provide a complete classification\r\nof secure weight functions, proving
    that a weight function is secure against private\r\ndouble-spend attacks if and
    only if it is homogeneous in the timed resources (V,W)\r\nand sub-homogeneous
    in S. This framework unifies existing protocols like Bitcoin and\r\nChia under
    a single theoretical model and provides a powerful tool for designing new\r\nlongest-chain
    blockchains from a mix of physical resources."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Mirza Ahad
  full_name: Baig, Mirza Ahad
  id: 3EDE6DE4-AA5A-11E9-986D-341CE6697425
  last_name: Baig
citation:
  ama: Baig MA. On secure chain selection rules from physical resources in a permissionless
    setting. 2026. doi:<a href="https://doi.org/10.15479/AT-ISTA-21651">10.15479/AT-ISTA-21651</a>
  apa: Baig, M. A. (2026). <i>On secure chain selection rules from physical resources
    in a permissionless setting</i>. Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT-ISTA-21651">https://doi.org/10.15479/AT-ISTA-21651</a>
  chicago: Baig, Mirza Ahad. “On Secure Chain Selection Rules from Physical Resources
    in a Permissionless Setting.” Institute of Science and Technology Austria, 2026.
    <a href="https://doi.org/10.15479/AT-ISTA-21651">https://doi.org/10.15479/AT-ISTA-21651</a>.
  ieee: M. A. Baig, “On secure chain selection rules from physical resources in a
    permissionless setting,” Institute of Science and Technology Austria, 2026.
  ista: Baig MA. 2026. On secure chain selection rules from physical resources in
    a permissionless setting. Institute of Science and Technology Austria.
  mla: Baig, Mirza Ahad. <i>On Secure Chain Selection Rules from Physical Resources
    in a Permissionless Setting</i>. Institute of Science and Technology Austria,
    2026, doi:<a href="https://doi.org/10.15479/AT-ISTA-21651">10.15479/AT-ISTA-21651</a>.
  short: M.A. Baig, On Secure Chain Selection Rules from Physical Resources in a Permissionless
    Setting, Institute of Science and Technology Austria, 2026.
corr_author: '1'
date_created: 2026-04-02T09:31:34Z
date_published: 2026-03-04T00:00:00Z
date_updated: 2026-04-15T08:45:19Z
day: '04'
ddc:
- '000'
degree_awarded: PhD
department:
- _id: GradSch
- _id: KrPi
doi: 10.15479/AT-ISTA-21651
file:
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  checksum: c3986dba90653dac97adba662ebff238
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  file_id: '21655'
  file_name: PhD-Thesis-Mirza-Ahad-Baig - Library Submission.zip
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  checksum: 292a5989262521f7c145a109d1f348cb
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  date_created: 2026-04-03T17:29:30Z
  date_updated: 2026-04-15T07:37:25Z
  file_id: '21656'
  file_name: 2026_Baig_Mirza_Ahad_Thesis.pdf
  file_size: 1942037
  relation: main_file
file_date_updated: 2026-04-15T07:37:25Z
has_accepted_license: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '03'
oa: 1
oa_version: Published Version
publication_identifier:
  isbn:
  - 978-3-99078-078-7
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '21134'
    relation: part_of_dissertation
    status: public
  - id: '20587'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
title: On secure chain selection rules from physical resources in a permissionless
  setting
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21657'
abstract:
- lang: eng
  text: We compare three global kilometer-scale models (ICON, IFS and NICAM) to clarify
    the advantages and challenges of high-resolution global weather and climate modeling,
    using different approaches to represent convection, from fully parameterized to
    fully explicit. Our analysis focuses on tropical precipitation characteristics
    spanning a wide range of spatio-temporal scales—including the diurnal cycle, extreme
    precipitation, convective organization, and the Madden-Julian Oscillation (MJO)—along
    with interactions between convection and the thermodynamic environment. All three
    models commonly show weaker convective organization with smaller precipitation
    cells than observed, though the strength of the bias varies by model. This diversity
    is introduced by differences in the representation of (a) convective initiation
    affected by the convective sensitivity to moisture and (b) tropospheric moistening
    associated with deep convection. Models with stronger thermodynamic-convection
    coupling increase environmental moisture near convection, thereby enhancing convective
    organization. This has important upscale effects on the MJO; while IFS and NICAM
    capture its eastward propagation well, ICON has difficulty reproducing it. The
    amplitudes and phases of precipitation diurnal cycles over land show much greater
    disagreement among the models than over ocean, influenced by how convection is
    initiated. Biases in rain evaporation and cold pool formation hinder the propagation
    of mesoscale convection, leading to errors such as the misrepresentation of nocturnal
    convection moving off the coast of Sumatra in IFS and ICON. These results highlight
    the importance of thermodynamic-convection coupling in realistically simulating
    tropical convection across scales. To improve this coupling, kilometer-scale models
    require better representation of the interaction between resolved convection and
    three-dimensional turbulent mixing.
acknowledgement: 'We thank Peter Bechtold, Lukas Brunner, Peter Dueben, Richard Forbes,
  Estibaliz Gascon, and Benoit Vanniere for providing insightful comments on the present
  study. We also thank Sebastian Milinski, Xabier Pedruzo and Thomas Rackow for their
  contributions to setting up IFS-FESOM for nextGEMS. We are also grateful to Dr.
  Walter Hannah and an anonymous reviewer for their constructive comments, which improved
  the original version of the manuscript. D. Takasuka was supported by JSPS KAKENHI
  Grants 20H05728 and 24K22893 and by JSPS Core-to-Core Program, “International Core-to-Core
  Project on Global Storm Resolving Analysis” (Grant Number: JPJSCCA20220001). T.
  Becker was supported by the Horizon 2020 project nextGEMS under grant agreement
  number 101003470. J. Bao acknowledges funding from the European Union''s Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie grant (grant
  agreement No 101034413). The ICON and IFS simulations were performed with supercomputing
  resources of the German Climate Computing Centre (Deutsches Klimarechenzentrum,
  DKRZ) granted by its Scientific Steering Committee (WLA) under project ID 1235.
  The NICAM simulation was performed on the supercomputer Fugaku (proposal numbers
  hp220132, hp230078, hp230108, hp230278, and hp240267).'
article_number: e2025MS005343
article_processing_charge: Yes
article_type: original
author:
- first_name: Daisuke
  full_name: Takasuka, Daisuke
  last_name: Takasuka
- first_name: Tobias
  full_name: Becker, Tobias
  last_name: Becker
- first_name: Jiawei
  full_name: Bao, Jiawei
  id: bb9a7399-fefd-11ed-be3c-ae648fd1d160
  last_name: Bao
citation:
  ama: Takasuka D, Becker T, Bao J. Precipitation characteristics and thermodynamic-convection
    coupling in global kilometer-scale simulations. <i>Journal of Advances in Modeling
    Earth Systems</i>. 2026;18(3). doi:<a href="https://doi.org/10.1029/2025MS005343">10.1029/2025MS005343</a>
  apa: Takasuka, D., Becker, T., &#38; Bao, J. (2026). Precipitation characteristics
    and thermodynamic-convection coupling in global kilometer-scale simulations. <i>Journal
    of Advances in Modeling Earth Systems</i>. Wiley. <a href="https://doi.org/10.1029/2025MS005343">https://doi.org/10.1029/2025MS005343</a>
  chicago: Takasuka, Daisuke, Tobias Becker, and Jiawei Bao. “Precipitation Characteristics
    and Thermodynamic-Convection Coupling in Global Kilometer-Scale Simulations.”
    <i>Journal of Advances in Modeling Earth Systems</i>. Wiley, 2026. <a href="https://doi.org/10.1029/2025MS005343">https://doi.org/10.1029/2025MS005343</a>.
  ieee: D. Takasuka, T. Becker, and J. Bao, “Precipitation characteristics and thermodynamic-convection
    coupling in global kilometer-scale simulations,” <i>Journal of Advances in Modeling
    Earth Systems</i>, vol. 18, no. 3. Wiley, 2026.
  ista: Takasuka D, Becker T, Bao J. 2026. Precipitation characteristics and thermodynamic-convection
    coupling in global kilometer-scale simulations. Journal of Advances in Modeling
    Earth Systems. 18(3), e2025MS005343.
  mla: Takasuka, Daisuke, et al. “Precipitation Characteristics and Thermodynamic-Convection
    Coupling in Global Kilometer-Scale Simulations.” <i>Journal of Advances in Modeling
    Earth Systems</i>, vol. 18, no. 3, e2025MS005343, Wiley, 2026, doi:<a href="https://doi.org/10.1029/2025MS005343">10.1029/2025MS005343</a>.
  short: D. Takasuka, T. Becker, J. Bao, Journal of Advances in Modeling Earth Systems
    18 (2026).
corr_author: '1'
date_created: 2026-04-05T22:01:31Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-06-16T10:43:35Z
day: '01'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.1029/2025MS005343
ec_funded: 1
file:
- access_level: open_access
  checksum: ca7dac4bab31348d0640ed22580c6dce
  content_type: application/pdf
  creator: dernst
  date_created: 2026-04-07T09:11:23Z
  date_updated: 2026-04-07T09:11:23Z
  file_id: '21665'
  file_name: 2026_JAMES_Takasuka.pdf
  file_size: 3854313
  relation: main_file
  success: 1
file_date_updated: 2026-04-07T09:11:23Z
has_accepted_license: '1'
intvolume: '        18'
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Journal of Advances in Modeling Earth Systems
publication_identifier:
  eissn:
  - 1942-2466
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Precipitation characteristics and thermodynamic-convection coupling in global
  kilometer-scale simulations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '21658'
abstract:
- lang: eng
  text: Dipolar (ℓ = 1) mixed modes have revealed a surprisingly weak differential
    rotation between the core and the envelope of evolved solar-like stars. Quadrupolar
    (ℓ = 2) mixed modes also contain information regarding internal dynamics but are
    very rarely characterised due to their low amplitude and the challenging identification
    of adjacent or overlapping rotationally split multiplets affected by near-degeneracy
    effects. We aim to extend the broadly used asymptotic seismic diagnostics beyond
    ℓ = 1 mixed modes by developing an analogue asymptotic description of ℓ = 2 mixed
    modes while explicitly accounting for near-degeneracy effects that distort their
    rotational multiplets. We have derived a new asymptotic formulation of near-degenerate
    mixed ℓ = 2 modes that describes off-diagonal terms representing the interaction
    between modes of adjacent radial orders. This formalism, expressed directly in
    the mixed-mode basis, provides analytical expressions for the near-degeneracy
    effects. We implemented the formalism within a global Bayesian mode-fitting framework
    for a direct fit of all ℓ = 0, 1, 2 modes in the power spectrum density. We were
    able to asymptotically model the asymmetric rotational splitting present in various
    radial orders of ℓ = 2 modes observed in young red giant stars without the need
    for any numerical stellar modelling. We applied our formalism to the Kepler target
    KIC 7341231, and it yielded core and envelope rotation rates consistent with previous
    numerical modelling while providing improved constraints from the global and model-independent
    approach. We also characterised the new target, KIC 8179973, measuring its rotation
    rate and mixed-mode parameters for the first time. As our framework relies on
    a direct global fit, it allows for much better precision on the asteroseismic
    parameters and rotation rate estimates than standard methods, yielding better
    constraints for rotation inversions. We have placed the first observational constraints
    on the asymptotic ℓ = 2 mixed-mode parameters (ΔΠ2, q2, and εg, 2), thus paving
    the way towards the use of asymptotic seismology beyond ℓ = 1 mixed modes.
acknowledgement: 'We thank the referee for their careful and constructive report,
  which has substantially enhanced both the quality and clarity of the manuscript.
  L. Bugnet and L. Einramhof gratefully acknowledge support from the European Research
  Council (ERC) under the Horizon Europe programme (Calcifer; Starting Grant agreement
  N°101165631). While partially funded by the European Union, views and opinions expressed
  are, however, those of the authors only and do not necessarily reflect those of
  the European Union or the European Research Council. Neither the European Union
  nor the granting authority can be held responsible for them. The authors acknowledge
  the great support and feedback provided during the redaction of this article by
  Pr. Rafael García and Pr. Savita Mathur. We would also like to thank Dr. Emily Hatt
  for her insights on uncertainty estimates. The authors also thank the members of
  the Asteroseismology and Stellar Dynamics group of the Institute of Science and
  Technology Austria (ISTA) for very useful discussions: L. Barrault, S.B. Das, K.
  Smith. This paper includes data collected by the Kepler mission and obtained from
  the MAST data archive at the Space Telescope Science Institute (STScI). Funding
  for the Kepler mission is provided by the NASA Science Mission Directorate. STScI
  is operated by the Association of Universities for Research in Astronomy, Inc.,
  under NASA contract NAS 5–26555. Software: AstroPy (Astropy Collaboration 2013,
  2018), Matplotlib (Hunter 2007), NumPy (Harris et al. 2020), SciPy (Virtanen et
  al. 2020), emcee (Foreman-Mackey et al. 2013), celerite (Foreman-Mackey et al. 2017),
  slepc4py (Dalcin et al. 2011; Hernandez et al. 2005), KADACS (García et al. 2011),
  sloscillations (Kuszlewicz et al. 2019, 2023).'
article_number: A321
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Bastien Raymond Bernard
  full_name: Liagre, Bastien Raymond Bernard
  id: 662f1873-cab4-11f0-a719-8087d302868d
  last_name: Liagre
- first_name: Aayush A
  full_name: Desai, Aayush A
  id: 502cfd30-32c1-11ee-a9a4-d8dad5c6739e
  last_name: Desai
- first_name: Lukas
  full_name: Einramhof, Lukas
  id: f1497a1a-72ef-11ef-b75a-fd877bbf6e8c
  last_name: Einramhof
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
citation:
  ama: 'Liagre BRB, Desai AA, Einramhof L, Bugnet LA. Near-degeneracy effects in quadrupolar
    mixed modes: From an asymptotic description to data fitting. <i>Astronomy and
    Astrophysics</i>. 2026;707. doi:<a href="https://doi.org/10.1051/0004-6361/202558023">10.1051/0004-6361/202558023</a>'
  apa: 'Liagre, B. R. B., Desai, A. A., Einramhof, L., &#38; Bugnet, L. A. (2026).
    Near-degeneracy effects in quadrupolar mixed modes: From an asymptotic description
    to data fitting. <i>Astronomy and Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202558023">https://doi.org/10.1051/0004-6361/202558023</a>'
  chicago: 'Liagre, Bastien Raymond Bernard, Aayush A Desai, Lukas Einramhof, and
    Lisa Annabelle Bugnet. “Near-Degeneracy Effects in Quadrupolar Mixed Modes: From
    an Asymptotic Description to Data Fitting.” <i>Astronomy and Astrophysics</i>.
    EDP Sciences, 2026. <a href="https://doi.org/10.1051/0004-6361/202558023">https://doi.org/10.1051/0004-6361/202558023</a>.'
  ieee: 'B. R. B. Liagre, A. A. Desai, L. Einramhof, and L. A. Bugnet, “Near-degeneracy
    effects in quadrupolar mixed modes: From an asymptotic description to data fitting,”
    <i>Astronomy and Astrophysics</i>, vol. 707. EDP Sciences, 2026.'
  ista: 'Liagre BRB, Desai AA, Einramhof L, Bugnet LA. 2026. Near-degeneracy effects
    in quadrupolar mixed modes: From an asymptotic description to data fitting. Astronomy
    and Astrophysics. 707, A321.'
  mla: 'Liagre, Bastien Raymond Bernard, et al. “Near-Degeneracy Effects in Quadrupolar
    Mixed Modes: From an Asymptotic Description to Data Fitting.” <i>Astronomy and
    Astrophysics</i>, vol. 707, A321, EDP Sciences, 2026, doi:<a href="https://doi.org/10.1051/0004-6361/202558023">10.1051/0004-6361/202558023</a>.'
  short: B.R.B. Liagre, A.A. Desai, L. Einramhof, L.A. Bugnet, Astronomy and Astrophysics
    707 (2026).
corr_author: '1'
date_created: 2026-04-05T22:01:32Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-04-07T09:01:44Z
day: '01'
ddc:
- '520'
department:
- _id: LiBu
- _id: IlCa
- _id: GradSch
doi: 10.1051/0004-6361/202558023
external_id:
  arxiv:
  - '2511.05314 '
file:
- access_level: open_access
  checksum: 560cac19dc70184626b85e71a26ee22e
  content_type: application/pdf
  creator: dernst
  date_created: 2026-04-07T09:00:50Z
  date_updated: 2026-04-07T09:00:50Z
  file_id: '21664'
  file_name: 2026_AstronomyAstrophysics_Liagre.pdf
  file_size: 12287607
  relation: main_file
  success: 1
file_date_updated: 2026-04-07T09:00:50Z
has_accepted_license: '1'
intvolume: '       707'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Astronomy and Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Near-degeneracy effects in quadrupolar mixed modes: From an asymptotic description
  to data fitting'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 707
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '21659'
abstract:
- lang: eng
  text: The recent detection of solar equatorial Rossby waves has renewed interest
    in the study of gravito-inertial waves propagating in the convective envelope
    of solar-type stars. In particular, the ability of these envelope gravito-inertial
    modes to couple with those trapped in the radiative interior could open up new
    opportunities for probing the deep-layer dynamics of solar-type stars. The possibility
    for such a coupling to occur is particularly favoured among pre-main-sequence
    (PMS) solar-type stars. Indeed, due to the contraction of the protostellar object,
    they are able to reach high rotation frequencies before nuclear reactions are
    ignited and magnetic braking becomes the driving mechanism for their rotational
    evolution. In this work, we studied the coupling between the envelope inertial
    waves and the radiative interior g modes in PMS stars, focussing on the case of
    prograde dipolar modes. We considered the cases of 0.5 M⊙ and 1 M⊙ PMS models,
    each with three different scenarios of rotational evolution. We show that for
    stars that have formed with a sufficient amount of angular momentum, this coupling
    can occur in frequency ranges that are accessible to space-borne photometry, creating
    inertial dips in the period spacing pattern. Using an asymptotic analysis, we
    characterised the shape of these inertial dips to show that they depend on rotation
    and on the stiffness of the convective-radiative interface.
acknowledgement: 'The authors want to thank the anonymous referee for useful comments.
  SNB acknowledges support from PLATO ASI-INAF agreement no. 2022-28-HH.0 “PLATO Fase
  D”. SNB and AFL acknowledge support from the INAF grant MASTODINT. CP thanks the
  Belgian Federal Science Policy Office (BELSPO) for the financial support in the
  framework of the PRODEX Program of the European Space Agency (ESA) under contract
  number 4000141194. S.M acknowledges support from the CNES GOLF-SOHO and PLATO grants
  at CEA/DAp. LB and SM gratefully acknowledge support from the European Research
  Council (ERC) under the Horizon Europe programme (LB: Calcifer; Starting Grant agreement
  N°101165631; SM: 4D-STAR; Synergy Grant agreement N°101071505). While partially
  funded by the European Union, views and opinions expressed are, however, those of
  the authors only and do not necessarily reflect those of the European Union or the
  European Research Council. Neither the European Union nor the granting authority
  can be held responsible for them. The authors acknowledge G. Buldgen, H. Dhouib,
  and M.A. Dupret for fruitful discussions.'
article_number: L16
article_processing_charge: No
article_type: letter_editor
arxiv: 1
author:
- first_name: S. N.
  full_name: Breton, S. N.
  last_name: Breton
- first_name: C.
  full_name: Pezzotti, C.
  last_name: Pezzotti
- first_name: S.
  full_name: Mathis, S.
  last_name: Mathis
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
- first_name: M. P.
  full_name: Di Mauro, M. P.
  last_name: Di Mauro
- first_name: J.
  full_name: Joergensen, J.
  last_name: Joergensen
- first_name: K.
  full_name: Zwintz, K.
  last_name: Zwintz
- first_name: A. F.
  full_name: Lanza, A. F.
  last_name: Lanza
citation:
  ama: Breton SN, Pezzotti C, Mathis S, et al. Core-envelope coupling of gravito-inertial
    waves in pre-main-sequence solar-type stars. <i>Astronomy &#38; Astrophysics</i>.
    2026;707. doi:<a href="https://doi.org/10.1051/0004-6361/202659309">10.1051/0004-6361/202659309</a>
  apa: Breton, S. N., Pezzotti, C., Mathis, S., Bugnet, L. A., Di Mauro, M. P., Joergensen,
    J., … Lanza, A. F. (2026). Core-envelope coupling of gravito-inertial waves in
    pre-main-sequence solar-type stars. <i>Astronomy &#38; Astrophysics</i>. Wiley.
    <a href="https://doi.org/10.1051/0004-6361/202659309">https://doi.org/10.1051/0004-6361/202659309</a>
  chicago: Breton, S. N., C. Pezzotti, S. Mathis, Lisa Annabelle Bugnet, M. P. Di
    Mauro, J. Joergensen, K. Zwintz, and A. F. Lanza. “Core-Envelope Coupling of Gravito-Inertial
    Waves in Pre-Main-Sequence Solar-Type Stars.” <i>Astronomy &#38; Astrophysics</i>.
    Wiley, 2026. <a href="https://doi.org/10.1051/0004-6361/202659309">https://doi.org/10.1051/0004-6361/202659309</a>.
  ieee: S. N. Breton <i>et al.</i>, “Core-envelope coupling of gravito-inertial waves
    in pre-main-sequence solar-type stars,” <i>Astronomy &#38; Astrophysics</i>, vol.
    707. Wiley, 2026.
  ista: Breton SN, Pezzotti C, Mathis S, Bugnet LA, Di Mauro MP, Joergensen J, Zwintz
    K, Lanza AF. 2026. Core-envelope coupling of gravito-inertial waves in pre-main-sequence
    solar-type stars. Astronomy &#38; Astrophysics. 707, L16.
  mla: Breton, S. N., et al. “Core-Envelope Coupling of Gravito-Inertial Waves in
    Pre-Main-Sequence Solar-Type Stars.” <i>Astronomy &#38; Astrophysics</i>, vol.
    707, L16, Wiley, 2026, doi:<a href="https://doi.org/10.1051/0004-6361/202659309">10.1051/0004-6361/202659309</a>.
  short: S.N. Breton, C. Pezzotti, S. Mathis, L.A. Bugnet, M.P. Di Mauro, J. Joergensen,
    K. Zwintz, A.F. Lanza, Astronomy &#38; Astrophysics 707 (2026).
date_created: 2026-04-05T22:01:32Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-04-07T09:23:27Z
day: '01'
ddc:
- '520'
department:
- _id: LiBu
doi: 10.1051/0004-6361/202659309
external_id:
  arxiv:
  - '2603.01979'
file:
- access_level: open_access
  checksum: a7fd798bf450d67d4166fdf54ff2c70c
  content_type: application/pdf
  creator: dernst
  date_created: 2026-04-07T09:20:02Z
  date_updated: 2026-04-07T09:20:02Z
  file_id: '21666'
  file_name: 2026_AstronomyAstrophysics_Breton.pdf
  file_size: 1535506
  relation: main_file
  success: 1
file_date_updated: 2026-04-07T09:20:02Z
has_accepted_license: '1'
intvolume: '       707'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 914d8549-16d5-11f0-9cad-bbe6324c93a9
  grant_number: '101165631'
  name: 'Unveiling the mysteries of stellar dynamics: a pioneering journey in magnetoasteroseismology'
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Core-envelope coupling of gravito-inertial waves in pre-main-sequence solar-type
  stars
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 707
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21660'
abstract:
- lang: eng
  text: Kapitza-Dirac scattering, the diffraction of matter waves from a standing
    light field, is widely utilized in ultracold gases, but its behavior in the strongly
    interacting regime is an open question. Here, we develop a numerically exact two-body
    description of Kapitza-Dirac scattering for two contact-interacting atoms in a
    one-dimensional harmonic trap subjected to a pulsed optical lattice, enabling
    us to obtain the numerically exact dynamics. We map how interaction strength,
    lattice depth, lattice wave number, and pulse duration reshape the diffraction
    pattern, leading to an interaction-dependent population redistribution in real
    and momentum space. By comparing the exact dynamics to an impulsive sudden-approximation
    description, we delineate the parameter regimes where it remains accurate and
    those, notably at strong attraction and small lattice wave number, where it fails.
    Our results provide a controlled few-body benchmark for interacting Kapitza-Dirac
    scattering and quantitative guidance for Kapitza-Dirac-based probes of ultracold
    atomic systems.
acknowledgement: We thank Max Hachmann, Andreas Hemmerich, and Yann Kiefer for valuable
  discussions. This work has been funded by the Cluster of Excellence “Advanced Imaging
  of Matter” of the Deutsche Forschungsgemeinschaft (DFG) - EXC 2056 - Project ID
  390715994. G.M.K. has received funding by the Austrian Science Fund (FWF) 10.55776/F1004.
article_number: '013297'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: A.
  full_name: Becker, A.
  last_name: Becker
- first_name: Georgios
  full_name: Koutentakis, Georgios
  id: d7b23d3a-9e21-11ec-b482-f76739596b95
  last_name: Koutentakis
- first_name: P.
  full_name: Schmelcher, P.
  last_name: Schmelcher
citation:
  ama: Becker A, Koutentakis G, Schmelcher P. Two-body Kapitza-Dirac scattering of
    one-dimensional ultracold atoms. <i>Physical Review Research</i>. 2026;8. doi:<a
    href="https://doi.org/10.1103/rdsn-stlq">10.1103/rdsn-stlq</a>
  apa: Becker, A., Koutentakis, G., &#38; Schmelcher, P. (2026). Two-body Kapitza-Dirac
    scattering of one-dimensional ultracold atoms. <i>Physical Review Research</i>.
    American Physical Society. <a href="https://doi.org/10.1103/rdsn-stlq">https://doi.org/10.1103/rdsn-stlq</a>
  chicago: Becker, A., Georgios Koutentakis, and P. Schmelcher. “Two-Body Kapitza-Dirac
    Scattering of One-Dimensional Ultracold Atoms.” <i>Physical Review Research</i>.
    American Physical Society, 2026. <a href="https://doi.org/10.1103/rdsn-stlq">https://doi.org/10.1103/rdsn-stlq</a>.
  ieee: A. Becker, G. Koutentakis, and P. Schmelcher, “Two-body Kapitza-Dirac scattering
    of one-dimensional ultracold atoms,” <i>Physical Review Research</i>, vol. 8.
    American Physical Society, 2026.
  ista: Becker A, Koutentakis G, Schmelcher P. 2026. Two-body Kapitza-Dirac scattering
    of one-dimensional ultracold atoms. Physical Review Research. 8, 013297.
  mla: Becker, A., et al. “Two-Body Kapitza-Dirac Scattering of One-Dimensional Ultracold
    Atoms.” <i>Physical Review Research</i>, vol. 8, 013297, American Physical Society,
    2026, doi:<a href="https://doi.org/10.1103/rdsn-stlq">10.1103/rdsn-stlq</a>.
  short: A. Becker, G. Koutentakis, P. Schmelcher, Physical Review Research 8 (2026).
corr_author: '1'
date_created: 2026-04-05T22:01:32Z
date_published: 2026-03-18T00:00:00Z
date_updated: 2026-04-07T09:37:57Z
day: '18'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1103/rdsn-stlq
external_id:
  arxiv:
  - '2512.15260'
file:
- access_level: open_access
  checksum: 339bff9d13486a8028049404988b9b0b
  content_type: application/pdf
  creator: dernst
  date_created: 2026-04-07T09:34:31Z
  date_updated: 2026-04-07T09:34:31Z
  file_id: '21667'
  file_name: 2026_PhysicalReviewResearch_Becker.pdf
  file_size: 2131627
  relation: main_file
  success: 1
file_date_updated: 2026-04-07T09:34:31Z
has_accepted_license: '1'
intvolume: '         8'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 7c040762-9f16-11ee-852c-dd79eeee4ab3
  grant_number: F100403
  name: Coherent Optical Metrology Beyond Electric-Dipole-Allowed Transitions
publication: Physical Review Research
publication_identifier:
  issn:
  - 2643-1564
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Two-body Kapitza-Dirac scattering of one-dimensional ultracold atoms
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21661'
abstract:
- lang: eng
  text: Model checking undiscounted reachability and expected-reward properties on
    Markov decision processes (MDPs) are key for the verification of systems that
    act under uncertainty. Popular algorithms are policy iteration and variants of
    value iteration; in tool competitions, most participants rely on the latter. These
    algorithms generally need worst-case exponential time. However, the problem can
    equally be formulated as a linear programme, solvable in polynomial time. In this
    paper, we give a detailed overview of today’s state-of-the-art algorithms for
    MDP model checking with a focus on performance and correctness. We highlight their
    fundamental differences, and describe various optimizations and implementation
    variants. We experimentally compare floating-point and exact-arithmetic implementations
    of all algorithms on three benchmark sets using two probabilistic model checkers.
    Our results show that (optimistic) value iteration is a sensible default, but
    other algorithms are preferable in specific settings. This paper thereby provides
    a guide for MDP verification practitioners—tool builders and users alike.
acknowledgement: "This research was funded by the European Union’s Horizon 2020 research
  and innovation programme under Marie Skłodowska-Curie grant agreements 101008233
  (MISSION)\r\nand 101034413 (IST-BRIDGE), by the Interreg North Sea project STORM_SAFE,
  by a KI-Starter grant from the Ministerium für Kultur und Wissenschaft NRW, by NWO
  VENI grant no. 639.021.754, and by NWO VIDI grant VI.Vidi.223.110 (TruSTy). Experiments
  were performed with computing resources granted by RWTH Aachen University under
  project rwth1632."
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Arnd
  full_name: Hartmanns, Arnd
  last_name: Hartmanns
- first_name: Sebastian
  full_name: Junges, Sebastian
  last_name: Junges
- first_name: Tim
  full_name: Quatmann, Tim
  last_name: Quatmann
- first_name: Maximilian
  full_name: Weininger, Maximilian
  id: 02ab0197-cc70-11ed-ab61-918e71f56881
  last_name: Weininger
  orcid: 0000-0002-0163-2152
citation:
  ama: Hartmanns A, Junges S, Quatmann T, Weininger M. The revised practitioner’s
    guide to MDP model checking algorithms. <i>International Journal on Software Tools
    for Technology Transfer</i>. 2026. doi:<a href="https://doi.org/10.1007/s10009-026-00848-y">10.1007/s10009-026-00848-y</a>
  apa: Hartmanns, A., Junges, S., Quatmann, T., &#38; Weininger, M. (2026). The revised
    practitioner’s guide to MDP model checking algorithms. <i>International Journal
    on Software Tools for Technology Transfer</i>. Springer Nature. <a href="https://doi.org/10.1007/s10009-026-00848-y">https://doi.org/10.1007/s10009-026-00848-y</a>
  chicago: Hartmanns, Arnd, Sebastian Junges, Tim Quatmann, and Maximilian Weininger.
    “The Revised Practitioner’s Guide to MDP Model Checking Algorithms.” <i>International
    Journal on Software Tools for Technology Transfer</i>. Springer Nature, 2026.
    <a href="https://doi.org/10.1007/s10009-026-00848-y">https://doi.org/10.1007/s10009-026-00848-y</a>.
  ieee: A. Hartmanns, S. Junges, T. Quatmann, and M. Weininger, “The revised practitioner’s
    guide to MDP model checking algorithms,” <i>International Journal on Software
    Tools for Technology Transfer</i>. Springer Nature, 2026.
  ista: Hartmanns A, Junges S, Quatmann T, Weininger M. 2026. The revised practitioner’s
    guide to MDP model checking algorithms. International Journal on Software Tools
    for Technology Transfer.
  mla: Hartmanns, Arnd, et al. “The Revised Practitioner’s Guide to MDP Model Checking
    Algorithms.” <i>International Journal on Software Tools for Technology Transfer</i>,
    Springer Nature, 2026, doi:<a href="https://doi.org/10.1007/s10009-026-00848-y">10.1007/s10009-026-00848-y</a>.
  short: A. Hartmanns, S. Junges, T. Quatmann, M. Weininger, International Journal
    on Software Tools for Technology Transfer (2026).
date_created: 2026-04-05T22:01:32Z
date_published: 2026-03-09T00:00:00Z
date_updated: 2026-04-07T09:52:54Z
day: '09'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1007/s10009-026-00848-y
ec_funded: 1
has_accepted_license: '1'
keyword:
- Quantitative model checking
- Markov decision process
- Linear programming
- Value iteration
- Policy iteration
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1007/s10009-026-00848-y
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: International Journal on Software Tools for Technology Transfer
publication_identifier:
  eissn:
  - 1433-2787
  issn:
  - 1433-2779
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '21668'
    relation: software
    status: public
scopus_import: '1'
status: public
title: The revised practitioner’s guide to MDP model checking algorithms
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21699'
abstract:
- lang: eng
  text: 'Recent research in nanophotonics for scintillation-based imaging has demonstrated
    promising improvements in scintillator performance. In parallel, advances in nanophotonics
    have enabled wavefront control through metasurfaces, a capability that has transformed
    fields such as microscopy by allowing tailored control of optical propagation.
    This naturally raises the following question, which we address in this perspective:
    can wavefront-control strategies be leveraged to improve scintillation-based imaging?
    To answer this question, we explore nanophotonic- and metasurface-enabled wavefront
    control in scintillators to mitigate image blurring arising from their intrinsically
    diffuse light emission. While depth-of-field extension in scintillation faces
    fundamental limitations absent in microscopy, this approach reveals promising
    avenues, including stacked scintillators, selective spatial-frequency enhancement,
    and X-ray energy-dependent imaging. These results clarify the key distinctions
    in adapting wavefront engineering to scintillation and its potential to enable
    tailored detection strategies.'
article_number: '2601.09830'
article_processing_charge: No
arxiv: 1
author:
- first_name: Joshua
  full_name: Chen, Joshua
  last_name: Chen
- first_name: Sachin
  full_name: Vaidya, Sachin
  last_name: Vaidya
- first_name: Simo
  full_name: Pajovic, Simo
  last_name: Pajovic
- first_name: Seou
  full_name: Choi, Seou
  last_name: Choi
- first_name: William
  full_name: Michaels, William
  last_name: Michaels
- first_name: Louis Martin-Monier
  full_name: Louis Martin-Monier, Louis Martin-Monier
  last_name: Louis Martin-Monier
- first_name: Juejun
  full_name: Hu, Juejun
  last_name: Hu
- first_name: Carol
  full_name: Cogswell, Carol
  last_name: Cogswell
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Marin
  full_name: Soljačić, Marin
  last_name: Soljačić
citation:
  ama: Chen J, Vaidya S, Pajovic S, et al. Wavefront engineering for scintillation-based
    imaging. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2601.09830">10.48550/arXiv.2601.09830</a>
  apa: Chen, J., Vaidya, S., Pajovic, S., Choi, S., Michaels, W., Louis Martin-Monier,
    L. M.-M., … Soljačić, M. (n.d.). Wavefront engineering for scintillation-based
    imaging. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2601.09830">https://doi.org/10.48550/arXiv.2601.09830</a>
  chicago: Chen, Joshua, Sachin Vaidya, Simo Pajovic, Seou Choi, William Michaels,
    Louis Martin-Monier Louis Martin-Monier, Juejun Hu, Carol Cogswell, Charles Roques-Carmes,
    and Marin Soljačić. “Wavefront Engineering for Scintillation-Based Imaging.” <i>ArXiv</i>,
    n.d. <a href="https://doi.org/10.48550/arXiv.2601.09830">https://doi.org/10.48550/arXiv.2601.09830</a>.
  ieee: J. Chen <i>et al.</i>, “Wavefront engineering for scintillation-based imaging,”
    <i>arXiv</i>. .
  ista: Chen J, Vaidya S, Pajovic S, Choi S, Michaels W, Louis Martin-Monier LM-M,
    Hu J, Cogswell C, Roques-Carmes C, Soljačić M. Wavefront engineering for scintillation-based
    imaging. arXiv, 2601.09830.
  mla: Chen, Joshua, et al. “Wavefront Engineering for Scintillation-Based Imaging.”
    <i>ArXiv</i>, 2601.09830, doi:<a href="https://doi.org/10.48550/arXiv.2601.09830">10.48550/arXiv.2601.09830</a>.
  short: J. Chen, S. Vaidya, S. Pajovic, S. Choi, W. Michaels, L.M.-M. Louis Martin-Monier,
    J. Hu, C. Cogswell, C. Roques-Carmes, M. Soljačić, ArXiv (n.d.).
date_created: 2026-04-09T09:10:41Z
date_published: 2026-01-14T00:00:00Z
date_updated: 2026-04-13T11:26:08Z
day: '14'
doi: 10.48550/arXiv.2601.09830
extern: '1'
external_id:
  arxiv:
  - '2601.09830'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2601.09830'
month: '01'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
scopus_import: '1'
status: public
title: Wavefront engineering for scintillation-based imaging
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21700'
abstract:
- lang: eng
  text: We provide a theoretical framework to describe the dynamics of a free-electron
    beam interacting with quantized bound systems in arbitrary electromagnetic environments.
    This expands the quantum optics toolbox to incorporate free-electron beams for
    applications in highly tunable quantum control, imaging, and spectroscopy at the
    nanoscale. The framework recovers previously studied results and shows that electromagnetic
    environments can amplify the intrinsically weak coupling between a free-electron
    and a bound electron to reach previously inaccessible interaction regimes. We
    leverage this enhanced coupling for experimentally feasible protocols in coherent
    qubit control and towards the nondestructive readout and projective control of
    the electron beam's quantum-number statistics. Our framework is broadly applicable
    to microwave-frequency qubits, optical nanophotonics, cavity quantum electrodynamics,
    and emerging platforms at the interface of electron microscopy and quantum information.
article_number: '2601.21385'
article_processing_charge: No
arxiv: 1
author:
- first_name: Jakob M.
  full_name: Grzesik, Jakob M.
  last_name: Grzesik
- first_name: Aviv
  full_name: Karnieli, Aviv
  last_name: Karnieli
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: Dylan S.
  full_name: Black, Dylan S.
  last_name: Black
- first_name: Trung Kiên
  full_name: Lê, Trung Kiên
  last_name: Lê
- first_name: Olav
  full_name: Solgaard, Olav
  last_name: Solgaard
- first_name: Shanhui
  full_name: Fan, Shanhui
  last_name: Fan
- first_name: Jelena
  full_name: Vučković, Jelena
  last_name: Vučković
citation:
  ama: Grzesik JM, Karnieli A, Roques-Carmes C, et al. A general framework for interactions
    between electron beams and quantum optical systems. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2601.21385">10.48550/arXiv.2601.21385</a>
  apa: Grzesik, J. M., Karnieli, A., Roques-Carmes, C., Black, D. S., Lê, T. K., Solgaard,
    O., … Vučković, J. (n.d.). A general framework for interactions between electron
    beams and quantum optical systems. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2601.21385">https://doi.org/10.48550/arXiv.2601.21385</a>
  chicago: Grzesik, Jakob M., Aviv Karnieli, Charles Roques-Carmes, Dylan S. Black,
    Trung Kiên Lê, Olav Solgaard, Shanhui Fan, and Jelena Vučković. “A General Framework
    for Interactions between Electron Beams and Quantum Optical Systems.” <i>ArXiv</i>,
    n.d. <a href="https://doi.org/10.48550/arXiv.2601.21385">https://doi.org/10.48550/arXiv.2601.21385</a>.
  ieee: J. M. Grzesik <i>et al.</i>, “A general framework for interactions between
    electron beams and quantum optical systems,” <i>arXiv</i>. .
  ista: Grzesik JM, Karnieli A, Roques-Carmes C, Black DS, Lê TK, Solgaard O, Fan
    S, Vučković J. A general framework for interactions between electron beams and
    quantum optical systems. arXiv, 2601.21385.
  mla: Grzesik, Jakob M., et al. “A General Framework for Interactions between Electron
    Beams and Quantum Optical Systems.” <i>ArXiv</i>, 2601.21385, doi:<a href="https://doi.org/10.48550/arXiv.2601.21385">10.48550/arXiv.2601.21385</a>.
  short: J.M. Grzesik, A. Karnieli, C. Roques-Carmes, D.S. Black, T.K. Lê, O. Solgaard,
    S. Fan, J. Vučković, ArXiv (n.d.).
date_created: 2026-04-09T09:10:41Z
date_published: 2026-01-29T00:00:00Z
date_updated: 2026-04-13T11:28:06Z
day: '29'
doi: 10.48550/arXiv.2601.21385
extern: '1'
external_id:
  arxiv:
  - '2601.21385'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2601.21385
month: '01'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
scopus_import: '1'
status: public
title: A general framework for interactions between electron beams and quantum optical
  systems
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21701'
abstract:
- lang: eng
  text: Polarization-resolved control and measurement of the optical field are essential
    for a wide range of photonic systems, including coherent communication, polarimetric
    sensing, and quantum information processing. We present a photonic integrated
    circuit that enables the generation and analysis of arbitrary polarization states.
    The device provides reconfigurable access to the full polarization degree of freedom
    of coherent light within a single integrated platform. We experimentally demonstrate
    arbitrary polarization state generation spanning the Poincare sphere, as well
    as Stokes vector measurement on chip. Unlike conventional Stokes measurements
    that rely on direct detection, polarization analysis utilizing this architecture
    is intrinsically non-destructive, preserving the optical signal for further optical
    domain processing. The devices are fabricated in a commercial foundry using CMOS-compatible
    processes, enabling scalable and reproducible integration. By combining polarization
    generation and analysis in a compact and stable photonic circuit, this work eliminates
    the need for external polarization optics and provides a foundation for robust,
    polarization-enabled photonic integrated systems.
article_number: '2602.17024'
article_processing_charge: No
arxiv: 1
author:
- first_name: Carson G.
  full_name: Valdez, Carson G.
  last_name: Valdez
- first_name: Anne R.
  full_name: Kroo, Anne R.
  last_name: Kroo
- first_name: Anna J.
  full_name: Miller, Anna J.
  last_name: Miller
- first_name: Charles
  full_name: Roques-Carmes, Charles
  id: e2e68fc9-6505-11ef-a541-eb4e72cc3e82
  last_name: Roques-Carmes
- first_name: David A. B.
  full_name: Miller, David A. B.
  last_name: Miller
- first_name: Olav
  full_name: Solgaard, Olav
  last_name: Solgaard
citation:
  ama: Valdez CG, Kroo AR, Miller AJ, Roques-Carmes C, Miller DAB, Solgaard O. Integrated
    photonic polarization synthesizer and analyzer. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2602.17024">10.48550/arXiv.2602.17024</a>
  apa: Valdez, C. G., Kroo, A. R., Miller, A. J., Roques-Carmes, C., Miller, D. A.
    B., &#38; Solgaard, O. (n.d.). Integrated photonic polarization synthesizer and
    analyzer. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2602.17024">https://doi.org/10.48550/arXiv.2602.17024</a>
  chicago: Valdez, Carson G., Anne R. Kroo, Anna J. Miller, Charles Roques-Carmes,
    David A. B. Miller, and Olav Solgaard. “Integrated Photonic Polarization Synthesizer
    and Analyzer.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2602.17024">https://doi.org/10.48550/arXiv.2602.17024</a>.
  ieee: C. G. Valdez, A. R. Kroo, A. J. Miller, C. Roques-Carmes, D. A. B. Miller,
    and O. Solgaard, “Integrated photonic polarization synthesizer and analyzer,”
    <i>arXiv</i>. .
  ista: Valdez CG, Kroo AR, Miller AJ, Roques-Carmes C, Miller DAB, Solgaard O. Integrated
    photonic polarization synthesizer and analyzer. arXiv, 2602.17024.
  mla: Valdez, Carson G., et al. “Integrated Photonic Polarization Synthesizer and
    Analyzer.” <i>ArXiv</i>, 2602.17024, doi:<a href="https://doi.org/10.48550/arXiv.2602.17024">10.48550/arXiv.2602.17024</a>.
  short: C.G. Valdez, A.R. Kroo, A.J. Miller, C. Roques-Carmes, D.A.B. Miller, O.
    Solgaard, ArXiv (n.d.).
date_created: 2026-04-09T09:10:41Z
date_published: 2026-02-19T00:00:00Z
date_updated: 2026-04-13T11:25:12Z
day: '19'
doi: 10.48550/arXiv.2602.17024
extern: '1'
external_id:
  arxiv:
  - '2602.17024 '
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2602.17024
month: '02'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
scopus_import: '1'
status: public
title: Integrated photonic polarization synthesizer and analyzer
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21703'
abstract:
- lang: eng
  text: Altermagnetism has recently emerged as a distinct class of collinear antiferromagnets
    that break time-reversal symmetry, exhibiting a host of novel properties. Applied
    strain has attracted particular attention as a key tuning parameter for altermagnets.
    Although several experimental studies have demonstrated the preparation of single-domain
    states through a combination of applied strain and magnetic field, the route to
    such states remains unclear. Here, we use magneto-optical measurements on single
    crystals of MnTe under applied strain to show that, in contrast to previous reports,
    strain acts primarily to rotate the Néel vector L continuously. Since the orientation
    of L determines the magnetic point group symmetry, this continuous rotation effectively
    tunes the symmetry and its associated physical properties. Furthermore, we demonstrate
    that built-in strain in free-standing crystals is sufficient to pin L into continuous
    textures over millimeter length scales. Together, these results provide guidance
    for future device design and open the door to leveraging the Néel vector orientation
    as a tunable degree of freedom in spintronic applications.
acknowledgement: "This research was primarily funded by the Quantum Materials (KC2202)
  program under the U.S. Department of Energy, Office of Science, Office of Basic
  Energy Sciences, Materials Sciences and Engineering Division under Contract No.
  DE-AC02-05CH11231, which supported the experimental and theoretical work at the
  LBNL and UC Berkeley. N.J.G., R. B. R., and I.I.M.\r\nwere supported by Army Research
  Office under Cooperative Agreement Number W911NF- 22-2-0173. H.M.L.N. and V.S. acknowledge
  funding through the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)
  through Grant No. TRR288—422213477, Project No. A10. H.M.L.N. acknowledges financial
  support from the Max Planck Society. Research in Dresden benefits from the environment
  provided by the DFG Cluster of Excellence ctd.qmat (EXC2147, Project ID 390858490)."
article_number: '2604.07653'
article_processing_charge: No
arxiv: 1
author:
- first_name: Alex Liebman-Peláez
  full_name: Alex Liebman-Peláez, Alex Liebman-Peláez
  last_name: Alex Liebman-Peláez
- first_name: Jon
  full_name: Kruppe, Jon
  last_name: Kruppe
- first_name: Resham Babu
  full_name: Regmi, Resham Babu
  last_name: Regmi
- first_name: Nirmal J.
  full_name: Ghimire, Nirmal J.
  last_name: Ghimire
- first_name: Yue
  full_name: Sun, Yue
  last_name: Sun
- first_name: Igor I.
  full_name: Mazin, Igor I.
  last_name: Mazin
- first_name: Hilary M. L.
  full_name: Noad, Hilary M. L.
  last_name: Noad
- first_name: James
  full_name: Analytis, James
  last_name: Analytis
- first_name: Veronika
  full_name: Sunko, Veronika
  id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
  last_name: Sunko
  orcid: 0000-0003-2724-3523
- first_name: Joseph
  full_name: Orenstein, Joseph
  last_name: Orenstein
citation:
  ama: Alex Liebman-Peláez AL-P, Kruppe J, Regmi RB, et al. Strain continuously rotates
    the Néel vector in altermagnetic MnTe. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2604.07653">10.48550/arXiv.2604.07653</a>
  apa: Alex Liebman-Peláez, A. L.-P., Kruppe, J., Regmi, R. B., Ghimire, N. J., Sun,
    Y., Mazin, I. I., … Orenstein, J. (n.d.). Strain continuously rotates the Néel
    vector in altermagnetic MnTe. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2604.07653">https://doi.org/10.48550/arXiv.2604.07653</a>
  chicago: Alex Liebman-Peláez, Alex Liebman-Peláez, Jon Kruppe, Resham Babu Regmi,
    Nirmal J. Ghimire, Yue Sun, Igor I. Mazin, Hilary M. L. Noad, James Analytis,
    Veronika Sunko, and Joseph Orenstein. “Strain Continuously Rotates the Néel Vector
    in Altermagnetic MnTe.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2604.07653">https://doi.org/10.48550/arXiv.2604.07653</a>.
  ieee: A. L.-P. Alex Liebman-Peláez <i>et al.</i>, “Strain continuously rotates the
    Néel vector in altermagnetic MnTe,” <i>arXiv</i>. .
  ista: Alex Liebman-Peláez AL-P, Kruppe J, Regmi RB, Ghimire NJ, Sun Y, Mazin II,
    Noad HML, Analytis J, Sunko V, Orenstein J. Strain continuously rotates the Néel
    vector in altermagnetic MnTe. arXiv, 2604.07653.
  mla: Alex Liebman-Peláez, Alex Liebman-Peláez, et al. “Strain Continuously Rotates
    the Néel Vector in Altermagnetic MnTe.” <i>ArXiv</i>, 2604.07653, doi:<a href="https://doi.org/10.48550/arXiv.2604.07653">10.48550/arXiv.2604.07653</a>.
  short: A.L.-P. Alex Liebman-Peláez, J. Kruppe, R.B. Regmi, N.J. Ghimire, Y. Sun,
    I.I. Mazin, H.M.L. Noad, J. Analytis, V. Sunko, J. Orenstein, ArXiv (n.d.).
date_created: 2026-04-10T14:17:21Z
date_published: 2026-04-08T00:00:00Z
date_updated: 2026-05-04T06:27:12Z
day: '08'
department:
- _id: VeSu
doi: 10.48550/arXiv.2604.07653
external_id:
  arxiv:
  - '2604.07653'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2604.07653
month: '04'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Strain continuously rotates the Néel vector in altermagnetic MnTe
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21704'
abstract:
- lang: eng
  text: How functional protein sequences are distributed in sequence space is fundamentally
    important for evolutionary theory and protein design, particularly if a large
    diversity of protein functions are hidden in evolutionarily unexplored areas of
    the sequence space. However, this question is understudied in part because experimental
    and computational studies use extant sequences as a starting point to study sequence
    space. Here, we study whether extant sequences are representative of the entire
    functional sequence space. Across thousands of protein families from vertebrates
    and bacteria we calculate the dimensionality and the volume of sequence space
    occupied by extant homologs. We find that the observed dimensionality and volume
    of extant sequence space are minuscule, many orders of magnitude smaller than
    what we estimated using a model of protein evolution. Simulating sequence evolution
    we then quantify the impact of phylogeny, selection, and epistasis on restricting
    the evolutionary exploration of sequence space. We find that sequence evolution
    from a single common ancestor, or a single point of origin in sequence space,
    is by far the largest limiting factor that reduces the dimensionality and volume
    of extant sequence space. These results indicate that there are vast areas of
    functional sequence space that have not been explored in evolution because of
    the excessive restrictions on natural exploration of the protein sequence space
    imposed by the point of origin effect. We suggest that protein design methods
    that rely on extant sequences may be limited in their ability to discover truly
    novel functions.
acknowledgement: We thank Olga Kalinina for feedback on our manuscript, Vsevolod Kuksin
  for fruitful discussions and Lev Tsarin for participation in the design of our models.
  This work was supported by Japan Science and Technology Agency as part of Adopting
  Sustainable Partnerships for Innovative Research Ecosystem, Grant No. JPMJAP24B2
  (F.A.K. and L.H.I.), and Fonds Zur Förderung der Wissenschaftlichen Forschung Grant
  ESP253-B (O.O.B.)
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Lada H.
  full_name: Isakova, Lada H.
  last_name: Isakova
- first_name: Elizaveta
  full_name: Streltsova, Elizaveta
  id: 57a170da-dc96-11ea-b7c8-ab3565071bf7
  last_name: Streltsova
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Peter K.
  full_name: Vlasov, Peter K.
  last_name: Vlasov
- first_name: Fyodor
  full_name: Kondrashov, Fyodor
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Isakova LH, Streltsova E, Bochkareva O, Vlasov PK, Kondrashov F. Descent from
    a common ancestor restricts exploration of protein sequence space. <i>Proceedings
    of the National Academy of Sciences</i>. 2026;123(14):e2532018123. doi:<a href="https://doi.org/10.1073/pnas.2532018123">10.1073/pnas.2532018123</a>
  apa: Isakova, L. H., Streltsova, E., Bochkareva, O., Vlasov, P. K., &#38; Kondrashov,
    F. (2026). Descent from a common ancestor restricts exploration of protein sequence
    space. <i>Proceedings of the National Academy of Sciences</i>. National Academy
    of Sciences. <a href="https://doi.org/10.1073/pnas.2532018123">https://doi.org/10.1073/pnas.2532018123</a>
  chicago: Isakova, Lada H., Elizaveta Streltsova, Olga Bochkareva, Peter K. Vlasov,
    and Fyodor Kondrashov. “Descent from a Common Ancestor Restricts Exploration of
    Protein Sequence Space.” <i>Proceedings of the National Academy of Sciences</i>.
    National Academy of Sciences, 2026. <a href="https://doi.org/10.1073/pnas.2532018123">https://doi.org/10.1073/pnas.2532018123</a>.
  ieee: L. H. Isakova, E. Streltsova, O. Bochkareva, P. K. Vlasov, and F. Kondrashov,
    “Descent from a common ancestor restricts exploration of protein sequence space,”
    <i>Proceedings of the National Academy of Sciences</i>, vol. 123, no. 14. National
    Academy of Sciences, p. e2532018123, 2026.
  ista: Isakova LH, Streltsova E, Bochkareva O, Vlasov PK, Kondrashov F. 2026. Descent
    from a common ancestor restricts exploration of protein sequence space. Proceedings
    of the National Academy of Sciences. 123(14), e2532018123.
  mla: Isakova, Lada H., et al. “Descent from a Common Ancestor Restricts Exploration
    of Protein Sequence Space.” <i>Proceedings of the National Academy of Sciences</i>,
    vol. 123, no. 14, National Academy of Sciences, 2026, p. e2532018123, doi:<a href="https://doi.org/10.1073/pnas.2532018123">10.1073/pnas.2532018123</a>.
  short: L.H. Isakova, E. Streltsova, O. Bochkareva, P.K. Vlasov, F. Kondrashov, Proceedings
    of the National Academy of Sciences 123 (2026) e2532018123.
date_created: 2026-04-12T22:01:47Z
date_published: 2026-04-07T00:00:00Z
date_updated: 2026-05-04T06:57:31Z
day: '07'
ddc:
- '570'
department:
- _id: UlWa
doi: 10.1073/pnas.2532018123
external_id:
  pmid:
  - '41915737'
file:
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  date_created: 2026-05-04T06:46:31Z
  date_updated: 2026-05-04T06:46:31Z
  file_id: '21783'
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  success: 1
file_date_updated: 2026-05-04T06:46:31Z
has_accepted_license: '1'
intvolume: '       123'
issue: '14'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '04'
oa: 1
oa_version: Published Version
page: e2532018123
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Descent from a common ancestor restricts exploration of protein sequence space
tmp:
  image: /images/cc_by_nc_nd.png
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    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 123
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21705'
abstract:
- lang: eng
  text: "We report the discovery of ATLAS J101342.5−451656.8 (hereafter ATLAS J1013−4516),
    an 8.56 minute orbital-period mass-transferring AM Canum Venaticorum (AM CVn)
    binary with a mean Gaia magnitude of G = 19.51, identified via periodic variability
    in light curves from the Asteroid Terrestrial-impact Last Alert System (ATLAS)
    of Gaia white dwarf candidates. Follow-up with the Large Lenslet Array Magellan
    Spectrograph shows a helium-dominated accretion disk, and high-speed ULTRACAM
    photometry reveals pronounced primary and secondary eclipses. We construct a decade-long
    timing baseline leveraging light curves from the ATLAS and Gaia surveys, as well
    as the high-speed imagers ULTRACAM on the New Energy Telescope and proto-Lightspeed
    on the Magellan Clay telescope. From this timing baseline, we measure an orbital
    period derivative of P 1.60 0.07 10 = ± × 12 s s−1. Interpreted in the context
    of stable mass transfer, the magnitude and sign of P indicate that the orbital
    evolution is governed by the interplay between gravitationalwave-driven angular-momentum
    losses and mass transfer, directly probing the donor’s structural response to
    mass loss. We constrain the accretor and donor mass based on stable mass-transfer
    arguments assuming angularmomentum loss dominated by gravitational-wave emission,
    allowing us to infer the characteristic gravitational\r\nwave strain of the binary
    for future space-based GW observatories such as the Laser Interferometer Space
    Antenna (LISA). We predict a characteristic strain corresponding to a 4 yr LISA
    signal-to-noise ratio ≳10, establishing ATLAS J1013−4516 as a strong prospective
    LISA source that will probe long-term orbital evolution in the mass-transferring
    regime."
acknowledgement: This work has made use of data from the Asteroid Terrestrial-impact
  Last Alert System (ATLAS) project. The Asteroid Terrestrial-impact Last Alert System
  (ATLAS) project is primarily funded to search for near-Earth asteroids through NASA
  grants NN12AR55G, 80NSSC18K0284, and 80NSSC18K1575; byproducts of the NEO search
  include images and catalogs from the survey area. This work was partially funded
  by Kepler/K2 grant J1944/80NSSC19K0112 and HST GO-15889 and STFC grants ST/T000198/1
  and ST/S006109/1. The ATLAS science products have been made possible through the
  contributions of the University of Hawaii Institute for Astronomy, the Queen’s University
  Belfast, the Space Telescope Science Institute, the South African Astronomical Observatory,
  and the Millennium Institute of Astrophysics (MAS), Chile. VSD and ULTRACAM are
  supported by STFC grant ST/Z000033/1. J.G.M. gratefully acknowledges support from
  the Heising-Simons Foundation and the Pappalardo family through the MIT Pappalardo
  Fellowship in Physics.
article_number: '237'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Emma T.
  full_name: Chickles, Emma T.
  last_name: Chickles
- first_name: Joheen
  full_name: Chakraborty, Joheen
  last_name: Chakraborty
- first_name: Kevin B.
  full_name: Burdge, Kevin B.
  last_name: Burdge
- first_name: Vik S.
  full_name: Dhillon, Vik S.
  last_name: Dhillon
- first_name: Paul
  full_name: Draghis, Paul
  last_name: Draghis
- first_name: Kareem
  full_name: El-Badry, Kareem
  last_name: El-Badry
- first_name: Matthew J.
  full_name: Green, Matthew J.
  last_name: Green
- first_name: Aaron
  full_name: Householder, Aaron
  last_name: Householder
- first_name: Sarah
  full_name: Hughes, Sarah
  last_name: Hughes
- first_name: Christopher
  full_name: Layden, Christopher
  last_name: Layden
- first_name: Stuart P.
  full_name: Littlefair, Stuart P.
  last_name: Littlefair
- first_name: James
  full_name: Munday, James
  last_name: Munday
- first_name: Ingrid
  full_name: Pelisoli, Ingrid
  last_name: Pelisoli
- first_name: Maya S.
  full_name: Redden, Maya S.
  last_name: Redden
- first_name: John
  full_name: Tonry, John
  last_name: Tonry
- first_name: Joannes C
  full_name: van Roestel, Joannes C
  id: 4d122fc8-6083-11f0-87a5-97d68b860333
  last_name: van Roestel
- first_name: Francesco Elio
  full_name: Angile, Francesco Elio
  last_name: Angile
- first_name: Alex J.
  full_name: Brown, Alex J.
  last_name: Brown
- first_name: Noel Castro
  full_name: Segura, Noel Castro
  last_name: Segura
- first_name: Jack
  full_name: Dinsmore, Jack
  last_name: Dinsmore
- first_name: Martin
  full_name: Dyer, Martin
  last_name: Dyer
- first_name: Gabor
  full_name: Furesz, Gabor
  last_name: Furesz
- first_name: Michelle
  full_name: Gabutti, Michelle
  last_name: Gabutti
- first_name: James
  full_name: Garbutt, James
  last_name: Garbutt
- first_name: Juliana
  full_name: García-Mejía, Juliana
  last_name: García-Mejía
- first_name: Daniel
  full_name: Jarvis, Daniel
  last_name: Jarvis
- first_name: Mark R.
  full_name: Kennedy, Mark R.
  last_name: Kennedy
- first_name: Paul
  full_name: Kerry, Paul
  last_name: Kerry
- first_name: James
  full_name: Mccormac, James
  last_name: Mccormac
- first_name: Geoffrey
  full_name: Mo, Geoffrey
  last_name: Mo
- first_name: Dave
  full_name: Osip, Dave
  last_name: Osip
- first_name: Steven
  full_name: Parsons, Steven
  last_name: Parsons
- first_name: Eleanor
  full_name: Pike, Eleanor
  last_name: Pike
- first_name: John J.
  full_name: Piotrowski, John J.
  last_name: Piotrowski
- first_name: Roger W.
  full_name: Romani, Roger W.
  last_name: Romani
- first_name: David
  full_name: Sahman, David
  last_name: Sahman
- first_name: Rob
  full_name: Simcoe, Rob
  last_name: Simcoe
citation:
  ama: Chickles ET, Chakraborty J, Burdge KB, et al. An eclipsing 8.56 minutes orbital
    period mass-transferring binary. <i>The Astrophysical Journal</i>. 2026;1000(2).
    doi:<a href="https://doi.org/10.3847/1538-4357/ae4871">10.3847/1538-4357/ae4871</a>
  apa: Chickles, E. T., Chakraborty, J., Burdge, K. B., Dhillon, V. S., Draghis, P.,
    El-Badry, K., … Simcoe, R. (2026). An eclipsing 8.56 minutes orbital period mass-transferring
    binary. <i>The Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae4871">https://doi.org/10.3847/1538-4357/ae4871</a>
  chicago: Chickles, Emma T., Joheen Chakraborty, Kevin B. Burdge, Vik S. Dhillon,
    Paul Draghis, Kareem El-Badry, Matthew J. Green, et al. “An Eclipsing 8.56 Minutes
    Orbital Period Mass-Transferring Binary.” <i>The Astrophysical Journal</i>. IOP
    Publishing, 2026. <a href="https://doi.org/10.3847/1538-4357/ae4871">https://doi.org/10.3847/1538-4357/ae4871</a>.
  ieee: E. T. Chickles <i>et al.</i>, “An eclipsing 8.56 minutes orbital period mass-transferring
    binary,” <i>The Astrophysical Journal</i>, vol. 1000, no. 2. IOP Publishing, 2026.
  ista: Chickles ET, Chakraborty J, Burdge KB, Dhillon VS, Draghis P, El-Badry K,
    Green MJ, Householder A, Hughes S, Layden C, Littlefair SP, Munday J, Pelisoli
    I, Redden MS, Tonry J, van Roestel JC, Angile FE, Brown AJ, Segura NC, Dinsmore
    J, Dyer M, Furesz G, Gabutti M, Garbutt J, García-Mejía J, Jarvis D, Kennedy MR,
    Kerry P, Mccormac J, Mo G, Osip D, Parsons S, Pike E, Piotrowski JJ, Romani RW,
    Sahman D, Simcoe R. 2026. An eclipsing 8.56 minutes orbital period mass-transferring
    binary. The Astrophysical Journal. 1000(2), 237.
  mla: Chickles, Emma T., et al. “An Eclipsing 8.56 Minutes Orbital Period Mass-Transferring
    Binary.” <i>The Astrophysical Journal</i>, vol. 1000, no. 2, 237, IOP Publishing,
    2026, doi:<a href="https://doi.org/10.3847/1538-4357/ae4871">10.3847/1538-4357/ae4871</a>.
  short: E.T. Chickles, J. Chakraborty, K.B. Burdge, V.S. Dhillon, P. Draghis, K.
    El-Badry, M.J. Green, A. Householder, S. Hughes, C. Layden, S.P. Littlefair, J.
    Munday, I. Pelisoli, M.S. Redden, J. Tonry, J.C. van Roestel, F.E. Angile, A.J.
    Brown, N.C. Segura, J. Dinsmore, M. Dyer, G. Furesz, M. Gabutti, J. Garbutt, J.
    García-Mejía, D. Jarvis, M.R. Kennedy, P. Kerry, J. Mccormac, G. Mo, D. Osip,
    S. Parsons, E. Pike, J.J. Piotrowski, R.W. Romani, D. Sahman, R. Simcoe, The Astrophysical
    Journal 1000 (2026).
date_created: 2026-04-12T22:01:47Z
date_published: 2026-04-01T00:00:00Z
date_updated: 2026-05-04T06:37:12Z
day: '01'
ddc:
- '520'
department:
- _id: IlCa
doi: 10.3847/1538-4357/ae4871
external_id:
  arxiv:
  - '2601.07925'
file:
- access_level: open_access
  checksum: c8f64a78f36224d8e0ea1f324e43e389
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T06:36:00Z
  date_updated: 2026-05-04T06:36:00Z
  file_id: '21782'
  file_name: 2026_AstrophysicalJournal_Chickles.pdf
  file_size: 1225916
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T06:36:00Z
has_accepted_license: '1'
intvolume: '      1000'
issue: '2'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: An eclipsing 8.56 minutes orbital period mass-transferring binary
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1000
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21707'
abstract:
- lang: eng
  text: Structural and functional differences between brain hemispheres are a common
    feature of animal nervous systems with reduced bilateral asymmetry often linked
    to impaired cognitive performance. How neuronal left-right asymmetry is initiated
    and integrated into a bilaterally symmetrical ground pattern is poorly understood.
    Here, we show that the directional asymmetry of a Drosophila central brain circuit
    originates from axonal interactions of two types of bilateral pioneer neurons.
    Subsequent recruitment of neighboring neurons into the asymmetric neuropil primordium
    results in hemisphere-specific microcircuits. Circuit lateralization requires
    dynamic expression of the cell adhesion molecule Fasciclin 2 to maintain structural
    plasticity in axonal remodeling. Reduced circuit asymmetry following cell type–specific
    Fasciclin 2 manipulation affects adult brain function. These results reveal an
    unexpected degree of developmental plasticity of late-born Drosophila neurons
    in the formation of a circuit node via the lateralized recruitment of symmetric
    circuit components.
acknowledgement: "We thank I. Salecker (Flybow), B. Altenhein (Fas2-Gal4Mz507), A.
  Nose (UAS-intra- and extra-Fas2::YFP), and C. S. Goodman (UAS-Fas2PEST+/−), as well
  as the Bloomington Stock Center for providing materials and fly stocks. We thank
  S. Waddell and the lab, especially B. Senapati, for providing the opportunity to
  conduct memory experiments at the CNCB, University of Oxford, and for supervision
  and discussions during this period. We also thank W. Kallina, S. Ilgerl, D. Bartel,
  A. Grimm, and A. Litin for technical support and the Hummel Lab for stimulating
  discussions and critical comments on the manuscript. We acknowledge the early exploratory
  work of A. Mattia, S. Trkulja, C. Schönherr, S. Bogner, B. Simpson, L. Tomasek,
  H. Roth, H. Vokač, R. Gredler, F. Kapelari, T. Kolarova, C. Ignitsch, Á. Bautista-Soldevila,
  and M. Kassem.\r\nThis research was funded by the University of Vienna, the Vienna
  Doctoral School Cognition, Behaviour and Neuroscience (uni:docs fellowship) (to
  J.W.M.) and by the Austrian Science Fund (FWF) (Cluster of Excellence Neuronal Circuits
  in Health and Disease, grant DOI 10.55776/COE16; https://www.fwf.ac.at/en/research-radar/10.55776/COE16)
  (to T.H.). For open access purposes, the author has applied a CC BY public copyright
  license to any author-accepted manuscript version arising from this submission."
article_number: eaea6020
article_processing_charge: Yes
article_type: original
author:
- first_name: Johann W.
  full_name: Markovitsch, Johann W.
  last_name: Markovitsch
- first_name: Daniel
  full_name: Mitić, Daniel
  last_name: Mitić
- first_name: Alisa
  full_name: Del Pilar Jiménez García, Alisa
  last_name: Del Pilar Jiménez García
- first_name: Alsberga
  full_name: Zane, Alsberga
  id: 60f7509a-f652-11ea-9d86-b963d6490d7c
  last_name: Zane
  orcid: 0009-0003-0415-7603
- first_name: Sarah
  full_name: Kainz, Sarah
  last_name: Kainz
- first_name: Rashmit
  full_name: Kaur, Rashmit
  last_name: Kaur
- first_name: Thomas
  full_name: Hummel, Thomas
  last_name: Hummel
citation:
  ama: Markovitsch JW, Mitić D, Del Pilar Jiménez García A, et al. Sequential formation
    of Drosophila circuit asymmetry via prolonged structural plasticity. <i>Science
    Advances</i>. 2026;12(13). doi:<a href="https://doi.org/10.1126/sciadv.aea6020">10.1126/sciadv.aea6020</a>
  apa: Markovitsch, J. W., Mitić, D., Del Pilar Jiménez García, A., Zane, A., Kainz,
    S., Kaur, R., &#38; Hummel, T. (2026). Sequential formation of Drosophila circuit
    asymmetry via prolonged structural plasticity. <i>Science Advances</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/sciadv.aea6020">https://doi.org/10.1126/sciadv.aea6020</a>
  chicago: Markovitsch, Johann W., Daniel Mitić, Alisa Del Pilar Jiménez García, Alsberga
    Zane, Sarah Kainz, Rashmit Kaur, and Thomas Hummel. “Sequential Formation of Drosophila
    Circuit Asymmetry via Prolonged Structural Plasticity.” <i>Science Advances</i>.
    American Association for the Advancement of Science, 2026. <a href="https://doi.org/10.1126/sciadv.aea6020">https://doi.org/10.1126/sciadv.aea6020</a>.
  ieee: J. W. Markovitsch <i>et al.</i>, “Sequential formation of Drosophila circuit
    asymmetry via prolonged structural plasticity,” <i>Science Advances</i>, vol.
    12, no. 13. American Association for the Advancement of Science, 2026.
  ista: Markovitsch JW, Mitić D, Del Pilar Jiménez García A, Zane A, Kainz S, Kaur
    R, Hummel T. 2026. Sequential formation of Drosophila circuit asymmetry via prolonged
    structural plasticity. Science Advances. 12(13), eaea6020.
  mla: Markovitsch, Johann W., et al. “Sequential Formation of Drosophila Circuit
    Asymmetry via Prolonged Structural Plasticity.” <i>Science Advances</i>, vol.
    12, no. 13, eaea6020, American Association for the Advancement of Science, 2026,
    doi:<a href="https://doi.org/10.1126/sciadv.aea6020">10.1126/sciadv.aea6020</a>.
  short: J.W. Markovitsch, D. Mitić, A. Del Pilar Jiménez García, A. Zane, S. Kainz,
    R. Kaur, T. Hummel, Science Advances 12 (2026).
date_created: 2026-04-12T22:01:48Z
date_published: 2026-03-27T00:00:00Z
date_updated: 2026-05-04T09:18:06Z
day: '27'
ddc:
- '570'
department:
- _id: MiSi
- _id: GradSch
doi: 10.1126/sciadv.aea6020
file:
- access_level: open_access
  checksum: 3eed470fe73e53d2a8d55d6fba6934e3
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T09:16:36Z
  date_updated: 2026-05-04T09:16:36Z
  file_id: '21786'
  file_name: 2026_ScienceAdv_Markovitsch.pdf
  file_size: 11101140
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T09:16:36Z
has_accepted_license: '1'
intvolume: '        12'
issue: '13'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Science Advances
publication_identifier:
  eissn:
  - 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sequential formation of Drosophila circuit asymmetry via prolonged structural
  plasticity
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21708'
abstract:
- lang: eng
  text: On October 4, 2023, a proglacial lake named the South Lhonak lake was the
    source of a catastrophic Glacier Lake Outburst Flood (GLOF) in the Teesta river
    basin area, resulting in 24 fatalities and leaving over 70 persons missing. The
    GLOF also destroyed 13 bridges and a major hydropower plant in the Chungthang
    region. Over 60,000 individuals in four districts of Sikkim were impacted by this
    GLOF event. This study examines the factors that led to the GLOF event. Our study
    shows that the cause of this GLOF was initiated by a landslide, that dumped a
    substantial amount (~ 38.31 million m3) of debris into the South Lhonak Lake.
    Furthermore, the glacier that was connected to the lake, lost a big chunk of ice
    mass (~ 7 million m3) due to calving. The combination of these two processes led
    to the collapse of the left lateral moraine that consequently generated flood
    waves which breached the terminal moraine dam of the lake. We recommend monitoring
    land subsidence and calving events for large proglacial lakes to prevent the disastrous
    consequences of such GLOFs in the future.
acknowledgement: This work was carried out independently without the support of any
  funding agency or sponsors. The authors thank the SARPROZ team for providing an
  evaluation license for the MTInSAR processing software.
article_number: '9741'
article_processing_charge: Yes
article_type: original
author:
- first_name: Litan Kumar
  full_name: Mohanty, Litan Kumar
  last_name: Mohanty
- first_name: Prateek
  full_name: Gantayat, Prateek
  id: 02734268-3e8d-11ef-80a1-cec4a088d004
  last_name: Gantayat
- first_name: Ankur
  full_name: Dixit, Ankur
  last_name: Dixit
- first_name: Manik
  full_name: Das Adhikari, Manik
  last_name: Das Adhikari
- first_name: Rahul
  full_name: Biswas, Rahul
  last_name: Biswas
- first_name: Vivek Kumar
  full_name: Singh, Vivek Kumar
  last_name: Singh
citation:
  ama: Mohanty LK, GANTAYAT P, Dixit A, Das Adhikari M, Biswas R, Singh VK. Sequence
    of events that led to the South Lhonak lake outburst flood in Sikkim, India. <i>Scientific
    Reports</i>. 2026;16. doi:<a href="https://doi.org/10.1038/s41598-026-35895-7">10.1038/s41598-026-35895-7</a>
  apa: Mohanty, L. K., GANTAYAT, P., Dixit, A., Das Adhikari, M., Biswas, R., &#38;
    Singh, V. K. (2026). Sequence of events that led to the South Lhonak lake outburst
    flood in Sikkim, India. <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-026-35895-7">https://doi.org/10.1038/s41598-026-35895-7</a>
  chicago: Mohanty, Litan Kumar, PRATEEK GANTAYAT, Ankur Dixit, Manik Das Adhikari,
    Rahul Biswas, and Vivek Kumar Singh. “Sequence of Events That Led to the South
    Lhonak Lake Outburst Flood in Sikkim, India.” <i>Scientific Reports</i>. Springer
    Nature, 2026. <a href="https://doi.org/10.1038/s41598-026-35895-7">https://doi.org/10.1038/s41598-026-35895-7</a>.
  ieee: L. K. Mohanty, P. GANTAYAT, A. Dixit, M. Das Adhikari, R. Biswas, and V. K.
    Singh, “Sequence of events that led to the South Lhonak lake outburst flood in
    Sikkim, India,” <i>Scientific Reports</i>, vol. 16. Springer Nature, 2026.
  ista: Mohanty LK, GANTAYAT P, Dixit A, Das Adhikari M, Biswas R, Singh VK. 2026.
    Sequence of events that led to the South Lhonak lake outburst flood in Sikkim,
    India. Scientific Reports. 16, 9741.
  mla: Mohanty, Litan Kumar, et al. “Sequence of Events That Led to the South Lhonak
    Lake Outburst Flood in Sikkim, India.” <i>Scientific Reports</i>, vol. 16, 9741,
    Springer Nature, 2026, doi:<a href="https://doi.org/10.1038/s41598-026-35895-7">10.1038/s41598-026-35895-7</a>.
  short: L.K. Mohanty, P. GANTAYAT, A. Dixit, M. Das Adhikari, R. Biswas, V.K. Singh,
    Scientific Reports 16 (2026).
corr_author: '1'
date_created: 2026-04-12T22:01:48Z
date_published: 2026-03-24T00:00:00Z
date_updated: 2026-05-04T07:54:53Z
day: '24'
ddc:
- '550'
department:
- _id: FrPe
doi: 10.1038/s41598-026-35895-7
external_id:
  pmid:
  - '41876546'
file:
- access_level: open_access
  checksum: cf13f61c38609ce6518d74562319c35f
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T07:24:59Z
  date_updated: 2026-05-04T07:24:59Z
  file_id: '21785'
  file_name: 2026_ScienceAdv_Mohanty.pdf
  file_size: 17406006
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T07:24:59Z
has_accepted_license: '1'
intvolume: '        16'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Scientific Reports
publication_identifier:
  eissn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sequence of events that led to the South Lhonak lake outburst flood in Sikkim,
  India
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21709'
abstract:
- lang: eng
  text: 'JWST’s “little red dots” (LRDs) are increasingly interpreted as active galactic
    nuclei (AGN) obscured by dense thermalized gas rather than dust as evidenced by
    their X-ray weakness, blackbody-like continua, and Balmer line profiles. Key questions
    are how LRDs connect to standard UV-luminous AGN, whether transitional phases
    exist, and whether they are observable. We present the “X-ray dot” (XRD), a compact
    source at z = 3.28 observed by the NIRSpec Wide Guaranteed Time Observation survey.
    The XRD exhibits LRD hallmarks: a blackbody-like (Teff ≃ 6400 K) red continuum,
    a faint but blue rest-UV excess, falling mid-IR emission, and broad Balmer lines
    (FWHM ∼ 2700–3200 km s−1). Unlike LRDs, however, it is remarkably X-ray luminous
    (L2−10 keV = 1044.18 erg s−1) and has a continuum inflection that is blueward
    of the Balmer limit. We find that the red rest-optical and blue mid-IR continuum
    cannot be reproduced by standard dust-attenuated AGN models without invoking extremely
    steep extinction curves, nor can the weak mid-IR emission be reconciled with well-established
    X-ray–torus scaling relations. We therefore consider an alternative scenario:
    the XRD may be an LRD in transition, where the gas envelope dominates the optical
    continuum but optically thin sight lines allow X-rays to escape. The XRD may thus
    provide a physical link between LRDs and standard AGN, offering direct evidence
    that LRDs are powered by supermassive black holes and providing insight into their
    accretion properties.'
acknowledgement: "We would like to thank the anonymous reviewer for their constructive
  comments, which improved the final manuscript.\r\n\r\nWe thank Bernd Husemann for
  his critical contributions to the NIRSpec Wide GTO survey, and in particular his
  help in selecting high-priority X-ray-luminous targets.\r\n\r\nR.E.H. acknowledges
  support by the German Aerospace Center (DLR) and the Federal Ministry for Economic
  Affairs and Energy (BMWi) through program 50OR2403 “RUBIES.” A.d.G. acknowledges
  support from a Clay Fellowship awarded by the Smithsonian Astrophysical Observatory.
  A.J.B. acknowledges funding from the “FirstGalaxies” Advanced grant from the European
  Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
  program (grant agreement No. 789056). R.P.N. thanks Neil Pappalardo and Jane Pappalardo
  for their generous support of the MIT Pappalardo Fellowships in Physics. Support
  for this work was provided by the Brinson Foundation through a Brinson Prize Fellowship
  grant. H.Ü. acknowledges funding by the European Union (ERC APEX, 101164796). Views
  and opinions expressed are, however, those of the authors only and do not necessarily
  reflect those of the European Union or the European Research Council Executive Agency.
  Neither the European Union nor the granting authority can be held responsible for
  them. G.V. acknowledges support from European Union’s HE ERC Starting grant No.
  101040227—WINGS. B.W. acknowledges support provided by NASA through Hubble Fellowship
  grant HST-HF2-51592.001 awarded by the Space Telescope Science Institute, which
  is operated by the Association of Universities for Research in Astronomy, In., for
  NASA, under the contract NAS 5-26555.\r\n\r\nThe data products presented herein
  were retrieved from the Dawn JWST Archive (DJA). DJA is an initiative of the Cosmic
  Dawn Center (DAWN).\r\n\r\nThis work is based in part on observations made with
  the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski
  Archive for Space Telescopes at the Space Telescope Science Institute, which is
  operated by the Association of Universities for Research in Astronomy, Inc., under
  NASA contract NAS 5-03127 for JWST. These observations are associated with programs
  Nos. GTO-1213. The data described here may be obtained from the MAST archive at
  DOI: 10.17909/qffz-b324.\r\n\r\nThis Letter employs a list of Chandra datasets,
  obtained by the Chandra X-ray Observatory, contained in DOI: 10.25574/cdc.540.\r\n\r\nThis
  work is based on observations taken by the 3D-HST Treasury Program (GO 12177 and
  12328) with the NASA/ESA HST, which is operated by the Association of Universities
  for Research in Astronomy, Inc., under NASA contract NAS5-26555.\r\n\r\nThis work
  makes use of color palettes created by Martin Krzywinski designed for colorblindness.
  The color palettes and more information can be found at http://mkweb.bcgsc.ca/colorblind/.\r\n\r\nFacilities:
  CXO - Chandra X-ray Observatory satellite (ACIS), HST - Hubble Space Telescope satellite
  (ACS, WFC3) - , CFHT - Canada-France-Hawaii Telescope (WIRCam), JWST - James Webb
  Space Telescope (NIRSpec), Spitzer - Spitzer Space Telescope satellite (IRAC, MIPS)
  - , JCMT - James Clerk Maxwell Telescope (SCUBA).\r\n\r\nSoftware: Astropy (Astropy
  Collaboration et al. 2013, 2018, 2022), dust_attenuation, dust_extinction (K. Gordon
  2024), jax (J. Bradbury et al. 2018), LaTeX (L. Lamport 1994), Matplotlib (J. D.
  Hunter 2007), NumPy (T. E. Oliphant 2006; S. van der Walt et al. 2011; C. R. Harris
  et al. 2020), NumPyro (D. Phan et al. 2019), scipy (P. Virtanen et al. 2020), sedpy
  (B. Johnson & J. Leja 2017), specutils (Astropy-Specutils Development Team 2019),
  unite (R. E. Hviding 2025)."
article_number: L18
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Raphael E.
  full_name: Hviding, Raphael E.
  last_name: Hviding
- first_name: Anna
  full_name: De Graaff, Anna
  last_name: De Graaff
- first_name: Hanpu
  full_name: Liu, Hanpu
  last_name: Liu
- first_name: Andy D.
  full_name: Goulding, Andy D.
  last_name: Goulding
- first_name: Yilun
  full_name: Ma, Yilun
  last_name: Ma
- first_name: Jenny E.
  full_name: Greene, Jenny E.
  last_name: Greene
- first_name: Leindert A.
  full_name: Boogaard, Leindert A.
  last_name: Boogaard
- first_name: Andrew J.
  full_name: Bunker, Andrew J.
  last_name: Bunker
- first_name: Nikko J.
  full_name: Cleri, Nikko J.
  last_name: Cleri
- first_name: Marijn
  full_name: Franx, Marijn
  last_name: Franx
- first_name: Michaela
  full_name: Hirschmann, Michaela
  last_name: Hirschmann
- first_name: Joel
  full_name: Leja, Joel
  last_name: Leja
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Rohan P.
  full_name: Naidu, Rohan P.
  last_name: Naidu
- first_name: David J.
  full_name: Setton, David J.
  last_name: Setton
- first_name: Hannah
  full_name: Übler, Hannah
  last_name: Übler
- first_name: Giacomo
  full_name: Venturi, Giacomo
  last_name: Venturi
- first_name: Bingjie
  full_name: Wang, Bingjie
  last_name: Wang
citation:
  ama: 'Hviding RE, De Graaff A, Liu H, et al. The X-ray dot: Exotic dust or a late-stage
    Little Red Dot? <i>The Astrophysical Journal Letters</i>. 2026;1000(1). doi:<a
    href="https://doi.org/10.3847/2041-8213/ae4c88">10.3847/2041-8213/ae4c88</a>'
  apa: 'Hviding, R. E., De Graaff, A., Liu, H., Goulding, A. D., Ma, Y., Greene, J.
    E., … Wang, B. (2026). The X-ray dot: Exotic dust or a late-stage Little Red Dot?
    <i>The Astrophysical Journal Letters</i>. IOP Publishing. <a href="https://doi.org/10.3847/2041-8213/ae4c88">https://doi.org/10.3847/2041-8213/ae4c88</a>'
  chicago: 'Hviding, Raphael E., Anna De Graaff, Hanpu Liu, Andy D. Goulding, Yilun
    Ma, Jenny E. Greene, Leindert A. Boogaard, et al. “The X-Ray Dot: Exotic Dust
    or a Late-Stage Little Red Dot?” <i>The Astrophysical Journal Letters</i>. IOP
    Publishing, 2026. <a href="https://doi.org/10.3847/2041-8213/ae4c88">https://doi.org/10.3847/2041-8213/ae4c88</a>.'
  ieee: 'R. E. Hviding <i>et al.</i>, “The X-ray dot: Exotic dust or a late-stage
    Little Red Dot?,” <i>The Astrophysical Journal Letters</i>, vol. 1000, no. 1.
    IOP Publishing, 2026.'
  ista: 'Hviding RE, De Graaff A, Liu H, Goulding AD, Ma Y, Greene JE, Boogaard LA,
    Bunker AJ, Cleri NJ, Franx M, Hirschmann M, Leja J, Matthee JJ, Naidu RP, Setton
    DJ, Übler H, Venturi G, Wang B. 2026. The X-ray dot: Exotic dust or a late-stage
    Little Red Dot? The Astrophysical Journal Letters. 1000(1), L18.'
  mla: 'Hviding, Raphael E., et al. “The X-Ray Dot: Exotic Dust or a Late-Stage Little
    Red Dot?” <i>The Astrophysical Journal Letters</i>, vol. 1000, no. 1, L18, IOP
    Publishing, 2026, doi:<a href="https://doi.org/10.3847/2041-8213/ae4c88">10.3847/2041-8213/ae4c88</a>.'
  short: R.E. Hviding, A. De Graaff, H. Liu, A.D. Goulding, Y. Ma, J.E. Greene, L.A.
    Boogaard, A.J. Bunker, N.J. Cleri, M. Franx, M. Hirschmann, J. Leja, J.J. Matthee,
    R.P. Naidu, D.J. Setton, H. Übler, G. Venturi, B. Wang, The Astrophysical Journal
    Letters 1000 (2026).
date_created: 2026-04-12T22:01:48Z
date_published: 2026-03-20T00:00:00Z
date_updated: 2026-05-04T07:13:07Z
day: '20'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.3847/2041-8213/ae4c88
external_id:
  arxiv:
  - '2601.09778'
file:
- access_level: open_access
  checksum: 1be4f361bf59aa08b8c98ed4f475a463
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T07:11:37Z
  date_updated: 2026-05-04T07:11:37Z
  file_id: '21784'
  file_name: 2026_AstrophysicalJourLetters_Hviding.pdf
  file_size: 2821786
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T07:11:37Z
has_accepted_license: '1'
intvolume: '      1000'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal Letters
publication_identifier:
  eissn:
  - 2041-8213
  issn:
  - 2041-8205
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The X-ray dot: Exotic dust or a late-stage Little Red Dot?'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1000
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '21710'
abstract:
- lang: eng
  text: "Early results from JWST suggest that Epoch of Reionization (EoR) galaxies
    produce copious ionizing photons, which, if they escape efficiently, could cause
    reionization to occur too early. We study this problem using JWST imaging and
    prism spectroscopy for 412 galaxies at 4.5 < z < 9.0. We fit these data simultaneously
    with stellar population and nebular emission models that include a parameter for
    the fraction of ionizing photons that escape the galaxy, fesc. We find that the
    ionization production efficiency, ξion = Q(H0)/LUV, increases with redshift and
    decreasing UV luminosity, but shows significant scatter, (log ion z, MUV) 0.3
    dex. The inferred escape fractions averaged over the population are low, ranging
    from〈fesc〉 ≃ 2.6% ± 1.4% at 6 < z < 9 to 6.5% ± 2.2% at 4.5 < z < 6, with weak
    or no indication of evolution with redshift. This implies that in our models most
    of the ionizing photons need to be absorbed to account for the nebular emission.
    We compute the impact of our results on reionization, including the distributions
    for ξion and fesc, and the evolution and uncertainty of the UV luminosity function.
    Considering galaxies brighter than MUV < −16 mag would produce an intergalactic
    medium hydrogen-ionized fraction of xe = 0.5 at 5.3 < z < 5.8, possibly too late
    compared to constraints from from quasistellar\r\nobject (QSO) sight lines. Including
    fainter galaxies, MUV < −14 mag, we obtain xe = 0.5 at 6.0 < z < 8.1, fully consistent
    with QSO and cosmic microwave background data. This implies that EoR galaxies
    produce plenty of ionizing photons, but that these do not efficiently escape.
    This may be a result of high gas column densities combined with burstier star
    formation histories, which limit the time massive stars are able to clear channels
    through the gas for ionizing photons to escape."
acknowledgement: "We wish to thank our colleagues in the CEERS collaboration for their
  hard work and valuable contributions on this project. We extend our sincerest thanks
  to the anonymous referee whose critical and constructive report improved the quality
  of this manuscript. We also thank the JADES team for providing an excellent dataset
  for science. We with to thank colleagues for valuable discussions, feedback, and
  suggestions, including John Chisholm, Kevin Huffenberger, Jessica\r\nMeh, Julian
  Muñoz, Irene Shivaei, Justin Spilker, Aaron Smith, and Romain Teyssier.\r\nPortions
  of this research were conducted with the advanced computing resources provided by
  Texas A&M High Performance Research Computing (HPRC, http://hprc.tamu.edu). This
  work benefited from support from the George P. and Cynthia Woods Mitchell Institute
  for Fundamental Physics and Astronomy at Texas A&M University. CP thanks Marsha
  and Ralph Schilling for generous support of this research. This work was partially
  support by the Future Investigators in NASA Earth and Space Science and Technology
  (FINESST) program grant No. 80NSSC23K1487. R.A. acknowledges support of grant PID2023-147386NB-I00
  funded by MICIU/AEI/10.13039/501100011033 and by ERDF/EU, and the Severo Ochoa grant
  CEX2021-001131-S funded by MCIN/AEI/10.13039/50110001103. A.C.C. acknowledges support
  from a UKRI Frontier Research Guarantee Grant (PI Carnall; grant reference EP/Y037065/1)
  This work acknowledges support from the NASA/ESA/CSA James Webb Space Telescope
  through the\r\nSpace Telescope Science Institute, which is operated by the Association
  of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-03127.
  Support for program JWST-ERS-01345.009-A, JWST-GO-02079.013-A, JWST-GO-06368.011-A,
  and JWST-GO-01837.030-A, was provided by NASA through a grant from the Space Telescope
  Science Institute, which is operated by the Association of Universities for Research
  in Astronomy, Inc., under NASA contract NAS 5-03127. This work made use of v2.2
  of the Binary Population\r\nand Spectral Synthesis (BPASS) models as described in
  E. R. Stanway & J. J. Eldridge (2018)."
article_number: '111'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Casey
  full_name: Papovich, Casey
  last_name: Papovich
- first_name: Justin W.
  full_name: Cole, Justin W.
  last_name: Cole
- first_name: Weida
  full_name: Hu, Weida
  last_name: Hu
- first_name: Steven L.
  full_name: Finkelstein, Steven L.
  last_name: Finkelstein
- first_name: Lu
  full_name: Shen, Lu
  last_name: Shen
- first_name: Pablo
  full_name: Arrabal Haro, Pablo
  last_name: Arrabal Haro
- first_name: Ricardo O.
  full_name: Amorín, Ricardo O.
  last_name: Amorín
- first_name: Bren E.
  full_name: Backhaus, Bren E.
  last_name: Backhaus
- first_name: Micaela B.
  full_name: Bagley, Micaela B.
  last_name: Bagley
- first_name: Rachana
  full_name: Bhatawdekar, Rachana
  last_name: Bhatawdekar
- first_name: Antonello
  full_name: Calabrò, Antonello
  last_name: Calabrò
- first_name: Adam C.
  full_name: Carnall, Adam C.
  last_name: Carnall
- first_name: Nikko J.
  full_name: Cleri, Nikko J.
  last_name: Cleri
- first_name: Emanuele
  full_name: Daddi, Emanuele
  last_name: Daddi
- first_name: Mark
  full_name: Dickinson, Mark
  last_name: Dickinson
- first_name: Norman A.
  full_name: Grogin, Norman A.
  last_name: Grogin
- first_name: Benne W.
  full_name: Holwerda, Benne W.
  last_name: Holwerda
- first_name: Anne E.
  full_name: Jaskot, Anne E.
  last_name: Jaskot
- first_name: Anton M.
  full_name: Koekemoer, Anton M.
  last_name: Koekemoer
- first_name: Mario
  full_name: Llerena, Mario
  last_name: Llerena
- first_name: Ray A.
  full_name: Lucas, Ray A.
  last_name: Lucas
- first_name: Sara
  full_name: Mascia, Sara
  id: edaf889c-c7cd-11ef-ab1b-bb28c431bd29
  last_name: Mascia
- first_name: Fabio
  full_name: Pacucci, Fabio
  last_name: Pacucci
- first_name: Laura
  full_name: Pentericci, Laura
  last_name: Pentericci
- first_name: Pablo G.
  full_name: Pérez-González, Pablo G.
  last_name: Pérez-González
- first_name: Nor
  full_name: Pirzkal, Nor
  last_name: Pirzkal
- first_name: Srinivasan
  full_name: Raghunathan, Srinivasan
  last_name: Raghunathan
- first_name: Lise Marie
  full_name: Seillé, Lise Marie
  last_name: Seillé
- first_name: Rachel S.
  full_name: Somerville, Rachel S.
  last_name: Somerville
- first_name: L. Y.Aaron
  full_name: Yung, L. Y.Aaron
  last_name: Yung
citation:
  ama: Papovich C, Cole JW, Hu W, et al. Galaxies in the epoch of reionization are
    all bark and no bite-plenty of ionizing photons, low escape fractions. <i>The
    Astrophysical Journal</i>. 2026;1000(1). doi:<a href="https://doi.org/10.3847/1538-4357/ae3b25">10.3847/1538-4357/ae3b25</a>
  apa: Papovich, C., Cole, J. W., Hu, W., Finkelstein, S. L., Shen, L., Arrabal Haro,
    P., … Yung, L. Y. A. (2026). Galaxies in the epoch of reionization are all bark
    and no bite-plenty of ionizing photons, low escape fractions. <i>The Astrophysical
    Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae3b25">https://doi.org/10.3847/1538-4357/ae3b25</a>
  chicago: Papovich, Casey, Justin W. Cole, Weida Hu, Steven L. Finkelstein, Lu Shen,
    Pablo Arrabal Haro, Ricardo O. Amorín, et al. “Galaxies in the Epoch of Reionization
    Are All Bark and No Bite-Plenty of Ionizing Photons, Low Escape Fractions.” <i>The
    Astrophysical Journal</i>. IOP Publishing, 2026. <a href="https://doi.org/10.3847/1538-4357/ae3b25">https://doi.org/10.3847/1538-4357/ae3b25</a>.
  ieee: C. Papovich <i>et al.</i>, “Galaxies in the epoch of reionization are all
    bark and no bite-plenty of ionizing photons, low escape fractions,” <i>The Astrophysical
    Journal</i>, vol. 1000, no. 1. IOP Publishing, 2026.
  ista: Papovich C, Cole JW, Hu W, Finkelstein SL, Shen L, Arrabal Haro P, Amorín
    RO, Backhaus BE, Bagley MB, Bhatawdekar R, Calabrò A, Carnall AC, Cleri NJ, Daddi
    E, Dickinson M, Grogin NA, Holwerda BW, Jaskot AE, Koekemoer AM, Llerena M, Lucas
    RA, Mascia S, Pacucci F, Pentericci L, Pérez-González PG, Pirzkal N, Raghunathan
    S, Seillé LM, Somerville RS, Yung LYA. 2026. Galaxies in the epoch of reionization
    are all bark and no bite-plenty of ionizing photons, low escape fractions. The
    Astrophysical Journal. 1000(1), 111.
  mla: Papovich, Casey, et al. “Galaxies in the Epoch of Reionization Are All Bark
    and No Bite-Plenty of Ionizing Photons, Low Escape Fractions.” <i>The Astrophysical
    Journal</i>, vol. 1000, no. 1, 111, IOP Publishing, 2026, doi:<a href="https://doi.org/10.3847/1538-4357/ae3b25">10.3847/1538-4357/ae3b25</a>.
  short: C. Papovich, J.W. Cole, W. Hu, S.L. Finkelstein, L. Shen, P. Arrabal Haro,
    R.O. Amorín, B.E. Backhaus, M.B. Bagley, R. Bhatawdekar, A. Calabrò, A.C. Carnall,
    N.J. Cleri, E. Daddi, M. Dickinson, N.A. Grogin, B.W. Holwerda, A.E. Jaskot, A.M.
    Koekemoer, M. Llerena, R.A. Lucas, S. Mascia, F. Pacucci, L. Pentericci, P.G.
    Pérez-González, N. Pirzkal, S. Raghunathan, L.M. Seillé, R.S. Somerville, L.Y.A.
    Yung, The Astrophysical Journal 1000 (2026).
date_created: 2026-04-12T22:01:49Z
date_published: 2026-03-20T00:00:00Z
date_updated: 2026-05-04T10:44:57Z
day: '20'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.3847/1538-4357/ae3b25
external_id:
  arxiv:
  - '2505.08870'
file:
- access_level: open_access
  checksum: 0031a6f197a3fa8c2845de10b6bdc696
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T10:40:07Z
  date_updated: 2026-05-04T10:40:07Z
  file_id: '21791'
  file_name: 2026_AstrophysicalJour_Papovich.pdf
  file_size: 6670398
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T10:40:07Z
has_accepted_license: '1'
intvolume: '      1000'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Galaxies in the epoch of reionization are all bark and no bite-plenty of ionizing
  photons, low escape fractions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1000
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21711'
abstract:
- lang: eng
  text: 'Background: Low-volume trapping columns are essential for sample enrichment,
    desalting, and injection profile focusing on nano-LC–MS-based proteomics. They
    enable higher sample loading, improve chromatographic performance, and protect
    the analytical column by removing salts and contaminants. Recently, monolithic
    trap columns with micropillar architecture have emerged as alternatives to conventionally
    packed traps. This study compares the performance of a packed and a micropillar
    monolithic trap column for the analysis of tryptic peptides. Methods: A tryptic
    digest of HeLa cell lysate was analyzed under identical LC–MS conditions using
    both trap types. Peptides were detected at 214 nm and analyzed by nano-ESI on
    a Q Exactive Plus Orbitrap. Data were searched against the human UniProt database
    (February 2023) using FragPipe v20.0, and statistical evaluation of MaxLFQ intensities
    was performed in Perseus using Welch’s t-test and clustering analysis. Results:
    Over 2500 proteins were identified with both setups. The packed trap column yielded
    more total peptides, particularly those with post-translational modifications
    and higher hydrophilicity, whereas the monolithic column favored peptides of intermediate
    hydrophobicity. Chromatographic profiles confirmed a slight reduction in the trapping
    efficiency of hydrophilic peptides by the monolithic trap. Conclusions: Trap column
    design significantly influences peptide recovery and proteome coverage.'
acknowledgement: 'The authors thank Gábor Tóth, Uppsala University, Sweden, and Armel
  Nicolas, Institute for Science and Technology Austria, for their support. This research
  was conducted during a student residency in Vienna under the auspices of OeAD. ZI:
  ICM-2016-03196.'
article_number: '10'
article_processing_charge: Yes
article_type: original
author:
- first_name: Jadranka
  full_name: Miletić Vukajlović, Jadranka
  last_name: Miletić Vukajlović
- first_name: Bojana
  full_name: Ilić, Bojana
  last_name: Ilić
- first_name: Bella
  full_name: Bruszel, Bella
  id: 70abbbb3-88ea-11ec-8e0a-e8c939944834
  last_name: Bruszel
- first_name: Tanja
  full_name: Panić-Janković, Tanja
  last_name: Panić-Janković
- first_name: Goran
  full_name: Mitulović, Goran
  last_name: Mitulović
citation:
  ama: Miletić Vukajlović J, Ilić B, Bruszel B, Panić-Janković T, Mitulović G. Comparison
    of the trapping efficiency for tryptic peptides on particle-packed and micro-pillar
    trap columns for proteomics analyses. <i>Proteomes</i>. 2026;14(1). doi:<a href="https://doi.org/10.3390/proteomes14010010">10.3390/proteomes14010010</a>
  apa: Miletić Vukajlović, J., Ilić, B., Bruszel, B., Panić-Janković, T., &#38; Mitulović,
    G. (2026). Comparison of the trapping efficiency for tryptic peptides on particle-packed
    and micro-pillar trap columns for proteomics analyses. <i>Proteomes</i>. MDPI.
    <a href="https://doi.org/10.3390/proteomes14010010">https://doi.org/10.3390/proteomes14010010</a>
  chicago: Miletić Vukajlović, Jadranka, Bojana Ilić, Bella Bruszel, Tanja Panić-Janković,
    and Goran Mitulović. “Comparison of the Trapping Efficiency for Tryptic Peptides
    on Particle-Packed and Micro-Pillar Trap Columns for Proteomics Analyses.” <i>Proteomes</i>.
    MDPI, 2026. <a href="https://doi.org/10.3390/proteomes14010010">https://doi.org/10.3390/proteomes14010010</a>.
  ieee: J. Miletić Vukajlović, B. Ilić, B. Bruszel, T. Panić-Janković, and G. Mitulović,
    “Comparison of the trapping efficiency for tryptic peptides on particle-packed
    and micro-pillar trap columns for proteomics analyses,” <i>Proteomes</i>, vol.
    14, no. 1. MDPI, 2026.
  ista: Miletić Vukajlović J, Ilić B, Bruszel B, Panić-Janković T, Mitulović G. 2026.
    Comparison of the trapping efficiency for tryptic peptides on particle-packed
    and micro-pillar trap columns for proteomics analyses. Proteomes. 14(1), 10.
  mla: Miletić Vukajlović, Jadranka, et al. “Comparison of the Trapping Efficiency
    for Tryptic Peptides on Particle-Packed and Micro-Pillar Trap Columns for Proteomics
    Analyses.” <i>Proteomes</i>, vol. 14, no. 1, 10, MDPI, 2026, doi:<a href="https://doi.org/10.3390/proteomes14010010">10.3390/proteomes14010010</a>.
  short: J. Miletić Vukajlović, B. Ilić, B. Bruszel, T. Panić-Janković, G. Mitulović,
    Proteomes 14 (2026).
date_created: 2026-04-12T22:01:49Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-05-04T10:36:21Z
day: '01'
ddc:
- '540'
department:
- _id: MassSpec
doi: 10.3390/proteomes14010010
external_id:
  pmid:
  - '41893725'
file:
- access_level: open_access
  checksum: 1e0c66bbf4b6e0be626a8639ea664b63
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T10:31:35Z
  date_updated: 2026-05-04T10:31:35Z
  file_id: '21790'
  file_name: 2026_Proteomes_Vukajlovic.pdf
  file_size: 1009723
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T10:31:35Z
has_accepted_license: '1'
intvolume: '        14'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Proteomes
publication_identifier:
  eissn:
  - 2227-7382
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Comparison of the trapping efficiency for tryptic peptides on particle-packed
  and micro-pillar trap columns for proteomics analyses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21712'
abstract:
- lang: eng
  text: Supermassive black hole binary (SMBHB) systems are expected to form as a consequence
    of galaxy mergers. At subparsec separations, SMBHBs can be identified as quasars
    with periodic variability, with previous periodicity searches uncovering significant
    candidates. However, these searches focused primarily on sinusoidal signals, while
    theoretical models and hydrodynamical simulations predict that binaries produce
    more complex non-sinusoidal pulse shapes. Here we examine the efficacy of the
    Lomb–Scargle periodogram (LSP; one of the most popular tools for periodicity searches
    in unevenly sampled lightcurves) to detect periodicities with a sawtooth shape
    mimicking results of hydrodynamical simulations. We simulate idealized well-sampled
    lightcurves, lightcurves that mimic the data in the Palomar Transient Factory
    (PTF) analyzed in M. Charisi et al. (2016), and lightcurves that resemble our
    expectations for single-band data in the upcoming Legacy Survey of Space and Time
    (LSST) of the Rubin Observatory. We approximate quasar variability with a damped
    random walk (DRW) model, inject sinusoidal and sawtooth pulse shapes, and assess
    their statistical significance. We find that in the presence of red noise, the
    LSP detects a relatively low fraction of the sinusoidal signals (∼45%, ∼24%, and
    ∼23%, in the PTF-like, idealized, and LSST-like lightcurves, respectively). The
    fraction is significantly reduced for sawtooth periodicity (with only ∼9% in PTF-like
    and ∼1% in idealized and LSST-like lightcurves). These low recovery rates imply
    that previous searches have missed the large majority of binaries. They also have
    significant implications for the detection of SMBHBs in upcoming LSST necessitating
    the development of advanced tools that go beyond the simple LSP.
acknowledgement: M.C. acknowledges support by the European Union (ERC; MMMonsters,
  101117624). This work was also supported in part by NASA grants 80NSSC24K0440 and
  80NSSC22K0822. This research used the resources of the Center for Institutional
  Research Computing at Washington State University.
article_number: '316'
article_processing_charge: Yes
article_type: original
author:
- first_name: Allison
  full_name: Lin, Allison
  last_name: Lin
- first_name: Maria
  full_name: Charisi, Maria
  last_name: Charisi
- first_name: Zoltán
  full_name: Haiman, Zoltán
  id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
  last_name: Haiman
  orcid: 0000-0003-3633-5403
citation:
  ama: Lin A, Charisi M, Haiman Z. Lomb-scargle periodogram struggles with non-sinusoidal
    supermassive Black Hole binary signatures in quasar lightcurves. <i>The Astrophysical
    Journal</i>. 2026;997(2). doi:<a href="https://doi.org/10.3847/1538-4357/ae29a7">10.3847/1538-4357/ae29a7</a>
  apa: Lin, A., Charisi, M., &#38; Haiman, Z. (2026). Lomb-scargle periodogram struggles
    with non-sinusoidal supermassive Black Hole binary signatures in quasar lightcurves.
    <i>The Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae29a7">https://doi.org/10.3847/1538-4357/ae29a7</a>
  chicago: Lin, Allison, Maria Charisi, and Zoltán Haiman. “Lomb-Scargle Periodogram
    Struggles with Non-Sinusoidal Supermassive Black Hole Binary Signatures in Quasar
    Lightcurves.” <i>The Astrophysical Journal</i>. IOP Publishing, 2026. <a href="https://doi.org/10.3847/1538-4357/ae29a7">https://doi.org/10.3847/1538-4357/ae29a7</a>.
  ieee: A. Lin, M. Charisi, and Z. Haiman, “Lomb-scargle periodogram struggles with
    non-sinusoidal supermassive Black Hole binary signatures in quasar lightcurves,”
    <i>The Astrophysical Journal</i>, vol. 997, no. 2. IOP Publishing, 2026.
  ista: Lin A, Charisi M, Haiman Z. 2026. Lomb-scargle periodogram struggles with
    non-sinusoidal supermassive Black Hole binary signatures in quasar lightcurves.
    The Astrophysical Journal. 997(2), 316.
  mla: Lin, Allison, et al. “Lomb-Scargle Periodogram Struggles with Non-Sinusoidal
    Supermassive Black Hole Binary Signatures in Quasar Lightcurves.” <i>The Astrophysical
    Journal</i>, vol. 997, no. 2, 316, IOP Publishing, 2026, doi:<a href="https://doi.org/10.3847/1538-4357/ae29a7">10.3847/1538-4357/ae29a7</a>.
  short: A. Lin, M. Charisi, Z. Haiman, The Astrophysical Journal 997 (2026).
date_created: 2026-04-12T22:01:49Z
date_published: 2026-02-01T00:00:00Z
date_updated: 2026-05-04T10:26:59Z
day: '01'
ddc:
- '520'
department:
- _id: ZoHa
doi: 10.3847/1538-4357/ae29a7
file:
- access_level: open_access
  checksum: 5162d1539ef7d10927ef73d8b4500017
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T10:24:49Z
  date_updated: 2026-05-04T10:24:49Z
  file_id: '21789'
  file_name: 2026_AstrophysicalJour_Lin.pdf
  file_size: 2619679
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T10:24:49Z
has_accepted_license: '1'
intvolume: '       997'
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Lomb-scargle periodogram struggles with non-sinusoidal supermassive Black Hole
  binary signatures in quasar lightcurves
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 997
year: '2026'
...
