---
_id: '8514'
abstract:
- lang: eng
  text: We study the extent to which the Hausdorff dimension of a compact subset of
    an infinite-dimensional Banach space is affected by a typical mapping into a finite-dimensional
    space. It is possible that the dimension drops under all such mappings, but the
    amount by which it typically drops is controlled by the ‘thickness exponent’ of
    the set, which was defined by Hunt and Kaloshin (Nonlinearity12 (1999), 1263–1275).
    More precisely, let $X$ be a compact subset of a Banach space $B$ with thickness
    exponent $\tau$ and Hausdorff dimension $d$. Let $M$ be any subspace of the (locally)
    Lipschitz functions from $B$ to $\mathbb{R}^{m}$ that contains the space of bounded
    linear functions. We prove that for almost every (in the sense of prevalence)
    function $f \in M$, the Hausdorff dimension of $f(X)$ is at least $\min\{ m, d
    / (1 + \tau) \}$. We also prove an analogous result for a certain part of the
    dimension spectra of Borel probability measures supported on $X$. The factor $1
    / (1 + \tau)$ can be improved to $1 / (1 + \tau / 2)$ if $B$ is a Hilbert space.
    Since dimension cannot increase under a (locally) Lipschitz function, these theorems
    become dimension preservation results when $\tau = 0$. We conjecture that many
    of the attractors associated with the evolution equations of mathematical physics
    have thickness exponent zero. We also discuss the sharpness of our results in
    the case $\tau > 0$.
article_processing_charge: No
article_type: original
author:
- first_name: WILLIAM
  full_name: OTT, WILLIAM
  last_name: OTT
- first_name: BRIAN
  full_name: HUNT, BRIAN
  last_name: HUNT
- first_name: Vadim
  full_name: Kaloshin, Vadim
  id: FE553552-CDE8-11E9-B324-C0EBE5697425
  last_name: Kaloshin
  orcid: 0000-0002-6051-2628
citation:
  ama: OTT W, HUNT B, Kaloshin V. The effect of projections on fractal sets and measures
    in Banach spaces. <i>Ergodic Theory and Dynamical Systems</i>. 2006;26(3):869-891.
    doi:<a href="https://doi.org/10.1017/s0143385705000714">10.1017/s0143385705000714</a>
  apa: OTT, W., HUNT, B., &#38; Kaloshin, V. (2006). The effect of projections on
    fractal sets and measures in Banach spaces. <i>Ergodic Theory and Dynamical Systems</i>.
    Cambridge University Press. <a href="https://doi.org/10.1017/s0143385705000714">https://doi.org/10.1017/s0143385705000714</a>
  chicago: OTT, WILLIAM, BRIAN HUNT, and Vadim Kaloshin. “The Effect of Projections
    on Fractal Sets and Measures in Banach Spaces.” <i>Ergodic Theory and Dynamical
    Systems</i>. Cambridge University Press, 2006. <a href="https://doi.org/10.1017/s0143385705000714">https://doi.org/10.1017/s0143385705000714</a>.
  ieee: W. OTT, B. HUNT, and V. Kaloshin, “The effect of projections on fractal sets
    and measures in Banach spaces,” <i>Ergodic Theory and Dynamical Systems</i>, vol.
    26, no. 3. Cambridge University Press, pp. 869–891, 2006.
  ista: OTT W, HUNT B, Kaloshin V. 2006. The effect of projections on fractal sets
    and measures in Banach spaces. Ergodic Theory and Dynamical Systems. 26(3), 869–891.
  mla: OTT, WILLIAM, et al. “The Effect of Projections on Fractal Sets and Measures
    in Banach Spaces.” <i>Ergodic Theory and Dynamical Systems</i>, vol. 26, no. 3,
    Cambridge University Press, 2006, pp. 869–91, doi:<a href="https://doi.org/10.1017/s0143385705000714">10.1017/s0143385705000714</a>.
  short: W. OTT, B. HUNT, V. Kaloshin, Ergodic Theory and Dynamical Systems 26 (2006)
    869–891.
date_created: 2020-09-18T10:48:52Z
date_published: 2006-06-01T00:00:00Z
date_updated: 2021-01-12T08:19:48Z
day: '01'
doi: 10.1017/s0143385705000714
extern: '1'
intvolume: '        26'
issue: '3'
language:
- iso: eng
month: '06'
oa_version: None
page: 869-891
publication: Ergodic Theory and Dynamical Systems
publication_identifier:
  issn:
  - 0143-3857
  - 1469-4417
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
status: public
title: The effect of projections on fractal sets and measures in Banach spaces
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2006'
...
---
_id: '8515'
abstract:
- lang: eng
  text: "We consider the evolution of a set carried by a space periodic incompressible
    stochastic flow in a Euclidean space. We\r\nreport on three main results obtained
    in [8, 9, 10] concerning long time behaviour for a typical realization of the
    stochastic flow. First, at time t most of the particles are at a distance of order
    √t away from the origin. Moreover, we prove a Central Limit Theorem for the evolution
    of a measure carried by the flow, which holds for almost every realization of
    the flow. Second, we show the existence of a zero measure full Hausdorff dimension
    set of points, which\r\nescape to infinity at a linear rate. Third, in the 2-dimensional
    case, we study the set of points visited by the original set by time t. Such a
    set, when scaled down by the factor of t, has a limiting non random shape."
article_processing_charge: No
author:
- first_name: Vadim
  full_name: Kaloshin, Vadim
  id: FE553552-CDE8-11E9-B324-C0EBE5697425
  last_name: Kaloshin
  orcid: 0000-0002-6051-2628
- first_name: D.
  full_name: DOLGOPYAT, D.
  last_name: DOLGOPYAT
- first_name: L.
  full_name: KORALOV, L.
  last_name: KORALOV
citation:
  ama: 'Kaloshin V, DOLGOPYAT D, KORALOV L. Long time behaviour of periodic stochastic
    flows. In: <i>XIVth International Congress on Mathematical Physics</i>. World
    Scientific; 2006:290-295. doi:<a href="https://doi.org/10.1142/9789812704016_0026">10.1142/9789812704016_0026</a>'
  apa: 'Kaloshin, V., DOLGOPYAT, D., &#38; KORALOV, L. (2006). Long time behaviour
    of periodic stochastic flows. In <i>XIVth International Congress on Mathematical
    Physics</i> (pp. 290–295). Lisbon, Portugal: World Scientific. <a href="https://doi.org/10.1142/9789812704016_0026">https://doi.org/10.1142/9789812704016_0026</a>'
  chicago: Kaloshin, Vadim, D. DOLGOPYAT, and L. KORALOV. “Long Time Behaviour of
    Periodic Stochastic Flows.” In <i>XIVth International Congress on Mathematical
    Physics</i>, 290–95. World Scientific, 2006. <a href="https://doi.org/10.1142/9789812704016_0026">https://doi.org/10.1142/9789812704016_0026</a>.
  ieee: V. Kaloshin, D. DOLGOPYAT, and L. KORALOV, “Long time behaviour of periodic
    stochastic flows,” in <i>XIVth International Congress on Mathematical Physics</i>,
    Lisbon, Portugal, 2006, pp. 290–295.
  ista: Kaloshin V, DOLGOPYAT D, KORALOV L. 2006. Long time behaviour of periodic
    stochastic flows. XIVth International Congress on Mathematical Physics. International
    Congress on Mathematical Physics, 290–295.
  mla: Kaloshin, Vadim, et al. “Long Time Behaviour of Periodic Stochastic Flows.”
    <i>XIVth International Congress on Mathematical Physics</i>, World Scientific,
    2006, pp. 290–95, doi:<a href="https://doi.org/10.1142/9789812704016_0026">10.1142/9789812704016_0026</a>.
  short: V. Kaloshin, D. DOLGOPYAT, L. KORALOV, in:, XIVth International Congress
    on Mathematical Physics, World Scientific, 2006, pp. 290–295.
conference:
  end_date: 2003-08-02
  location: Lisbon, Portugal
  name: International Congress on Mathematical Physics
  start_date: 2003-07-28
date_created: 2020-09-18T10:48:59Z
date_published: 2006-03-01T00:00:00Z
date_updated: 2021-01-12T08:19:49Z
day: '01'
doi: 10.1142/9789812704016_0026
extern: '1'
language:
- iso: eng
month: '03'
oa_version: None
page: 290-295
publication: XIVth International Congress on Mathematical Physics
publication_identifier:
  isbn:
  - '9789812562012'
  - '9789812704016'
publication_status: published
publisher: World Scientific
quality_controlled: '1'
status: public
title: Long time behaviour of periodic stochastic flows
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2006'
...
---
_id: '854'
abstract:
- lang: eng
  text: Phylogenetic relationships between the extinct woolly mammoth (Mammuthus primigenius),
    and the Asian (Elephas maximus) and African savanna (Loxodonta africana) elephants
    remain unresolved. Here, we report the sequence of the complete mitochondrial
    genome (16,842 base pairs) of a woolly mammoth extracted from permafrost-preserved
    remains from the Pleistocene epoch - the oldest mitochondrial genome sequence
    determined to date. We demonstrate that well-preserved mitochondrial genome fragments,
    as long as ∼1,600-1700 base pairs, can be retrieved from pre-Holocene remains
    of an extinct species. Phylogenetic reconstruction of the Elephantinae clade suggests
    that M. primigenius and E. maximus are sister species that diverged soon after
    their common ancestor split from the L. africana lineage. Low nucleotide diversity
    found between independently determined mitochondrial genomic sequences of woolly
    mammoths separated geographically and in time suggests that north-eastern Siberia
    was occupied by a relatively homogeneous population of M. primigenius throughout
    the late Pleistocene.
acknowledgement: |-
  FAK is supported by the NSF Graduate Research Fellowship.
  We thank the Natural History Museum, North-Eastern Research Center, Far Eastern Branch of the Russian Academy of Sciences for photographic material ofM. primigenius leg, V. A. Nikishina for artwork and technical support, Y.B. Yurov, G. Dvoryanchikov, N. Riazanskaya and T. Kolesnikova for technical support, K. Mehren and C. Gray for elephant specimens, and V. Y. Solovyev for help with artwork of animal images.
author:
- first_name: Evgeny
  full_name: Rogaev, Evgeny I
  last_name: Rogaev
- first_name: Yuri
  full_name: Moliaka, Yuri K
  last_name: Moliaka
- first_name: Boris
  full_name: Malyarchuk, Boris A
  last_name: Malyarchuk
- first_name: Fyodor
  full_name: Fyodor Kondrashov
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
- first_name: Miroslava
  full_name: Derenko, Miroslava V
  last_name: Derenko
- first_name: Ilya
  full_name: Chumakov, Ilya M
  last_name: Chumakov
- first_name: Anastasia
  full_name: Grigorenko, Anastasia P
  last_name: Grigorenko
citation:
  ama: Rogaev E, Moliaka Y, Malyarchuk B, et al. Complete mitochondrial genome and
    phylogeny of pleistocene mammoth Mammuthus primigenius. <i>PLoS Biology</i>. 2006;4(3):0403-0410.
    doi:<a href="https://doi.org/10.1371/journal.pbio.0040073">10.1371/journal.pbio.0040073</a>
  apa: Rogaev, E., Moliaka, Y., Malyarchuk, B., Kondrashov, F., Derenko, M., Chumakov,
    I., &#38; Grigorenko, A. (2006). Complete mitochondrial genome and phylogeny of
    pleistocene mammoth Mammuthus primigenius. <i>PLoS Biology</i>. Public Library
    of Science. <a href="https://doi.org/10.1371/journal.pbio.0040073">https://doi.org/10.1371/journal.pbio.0040073</a>
  chicago: Rogaev, Evgeny, Yuri Moliaka, Boris Malyarchuk, Fyodor Kondrashov, Miroslava
    Derenko, Ilya Chumakov, and Anastasia Grigorenko. “Complete Mitochondrial Genome
    and Phylogeny of Pleistocene Mammoth Mammuthus Primigenius.” <i>PLoS Biology</i>.
    Public Library of Science, 2006. <a href="https://doi.org/10.1371/journal.pbio.0040073">https://doi.org/10.1371/journal.pbio.0040073</a>.
  ieee: E. Rogaev <i>et al.</i>, “Complete mitochondrial genome and phylogeny of pleistocene
    mammoth Mammuthus primigenius,” <i>PLoS Biology</i>, vol. 4, no. 3. Public Library
    of Science, pp. 0403–0410, 2006.
  ista: Rogaev E, Moliaka Y, Malyarchuk B, Kondrashov F, Derenko M, Chumakov I, Grigorenko
    A. 2006. Complete mitochondrial genome and phylogeny of pleistocene mammoth Mammuthus
    primigenius. PLoS Biology. 4(3), 0403–0410.
  mla: Rogaev, Evgeny, et al. “Complete Mitochondrial Genome and Phylogeny of Pleistocene
    Mammoth Mammuthus Primigenius.” <i>PLoS Biology</i>, vol. 4, no. 3, Public Library
    of Science, 2006, pp. 0403–10, doi:<a href="https://doi.org/10.1371/journal.pbio.0040073">10.1371/journal.pbio.0040073</a>.
  short: E. Rogaev, Y. Moliaka, B. Malyarchuk, F. Kondrashov, M. Derenko, I. Chumakov,
    A. Grigorenko, PLoS Biology 4 (2006) 0403–0410.
date_created: 2018-12-11T11:48:51Z
date_published: 2006-03-01T00:00:00Z
date_updated: 2021-01-12T08:19:58Z
day: '01'
doi: 10.1371/journal.pbio.0040073
extern: 1
intvolume: '         4'
issue: '3'
month: '03'
page: 0403 - 0410
publication: PLoS Biology
publication_status: published
publisher: Public Library of Science
publist_id: '6794'
quality_controlled: 0
status: public
title: Complete mitochondrial genome and phylogeny of pleistocene mammoth Mammuthus
  primigenius
type: journal_article
volume: 4
year: '2006'
...
---
_id: '868'
abstract:
- lang: eng
  text: 'Background: The glyoxylate cycle is thought to be present in bacteria, protists,
    plants, fungi, and nematodes, but not in other Metazoa. However, activity of the
    glyoxylate cycle enzymes, malate synthase (MS) and isocitrate lyase (ICL), in
    animal tissues has been reported. In order to clarify the status of the MS and
    ICL genes in animals and get an insight into their evolution, we undertook a comparative-genomic
    study. Results: Using sequence similarity searches, we identified MS genes in
    arthropods, echinoderms, and vertebrates, including platypus and opossum, but
    not in the numerous sequenced genomes of placental mammals. The regions of the
    placental mammals'' genomes expected to code for malate synthase, as determined
    by comparison of the gene orders in vertebrate genomes, show clear similarity
    to the opossum MS sequence but contain stop codons, indicating that the MS gene
    became a pseudogene in placental mammals. By contrast, the ICL gene is undetectable
    in animals other than the nematodes that possess a bifunctional, fused ICL-MS
    gene. Examination of phylogenetic trees of MS and ICL suggests multiple horizontal
    gene transfer events that probably went in both directions between several bacterial
    and eukaryotic lineages. The strongest evidence was obtained for the acquisition
    of the bifunctional ICL-MS gene from an as yet unknown bacterial source with the
    corresponding operonic organization by the common ancestor of the nematodes. Conclusion:
    The distribution of the MS and ICL genes in animals suggests that either they
    encode alternative enzymes of the glyoxylate cycle that are not orthologous to
    the known MS and ICL or the animal MS acquired a new function that remains to
    be characterized. Regardless of the ultimate solution to this conundrum, the genes
    for the glyoxylate cycle enzymes present a remarkable variety of evolutionary
    events including unusual horizontal gene transfer from bacteria to animals.'
acknowledgement: The authors thank Alexey Kondrashov for suggesting the possibility
  of non- orthologous gene displacement in glyoxylate cycle specific enzymes and for
  critical reading of this manuscript. FAK is a National Science Foundation Graduate
  Fellow.
author:
- first_name: Fyodor
  full_name: Fyodor Kondrashov
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
- first_name: Eugene
  full_name: Koonin, Eugene V
  last_name: Koonin
- first_name: Igor
  full_name: Morgunov, Igor G
  last_name: Morgunov
- first_name: Tatiana
  full_name: Finogenova, Tatiana V
  last_name: Finogenova
- first_name: Marie
  full_name: Kondrashova, Marie N
  last_name: Kondrashova
citation:
  ama: Kondrashov F, Koonin E, Morgunov I, Finogenova T, Kondrashova M. Evolution
    of glyoxylate cycle enzymes in Metazoa Evidence of multiple horizontal transfer
    events and pseudogene formation. <i>Biology Direct</i>. 2006;1. doi:<a href="https://doi.org/10.1186/1745-6150-1-31">10.1186/1745-6150-1-31</a>
  apa: Kondrashov, F., Koonin, E., Morgunov, I., Finogenova, T., &#38; Kondrashova,
    M. (2006). Evolution of glyoxylate cycle enzymes in Metazoa Evidence of multiple
    horizontal transfer events and pseudogene formation. <i>Biology Direct</i>. BioMed
    Central. <a href="https://doi.org/10.1186/1745-6150-1-31">https://doi.org/10.1186/1745-6150-1-31</a>
  chicago: Kondrashov, Fyodor, Eugene Koonin, Igor Morgunov, Tatiana Finogenova, and
    Marie Kondrashova. “Evolution of Glyoxylate Cycle Enzymes in Metazoa Evidence
    of Multiple Horizontal Transfer Events and Pseudogene Formation.” <i>Biology Direct</i>.
    BioMed Central, 2006. <a href="https://doi.org/10.1186/1745-6150-1-31">https://doi.org/10.1186/1745-6150-1-31</a>.
  ieee: F. Kondrashov, E. Koonin, I. Morgunov, T. Finogenova, and M. Kondrashova,
    “Evolution of glyoxylate cycle enzymes in Metazoa Evidence of multiple horizontal
    transfer events and pseudogene formation,” <i>Biology Direct</i>, vol. 1. BioMed
    Central, 2006.
  ista: Kondrashov F, Koonin E, Morgunov I, Finogenova T, Kondrashova M. 2006. Evolution
    of glyoxylate cycle enzymes in Metazoa Evidence of multiple horizontal transfer
    events and pseudogene formation. Biology Direct. 1.
  mla: Kondrashov, Fyodor, et al. “Evolution of Glyoxylate Cycle Enzymes in Metazoa
    Evidence of Multiple Horizontal Transfer Events and Pseudogene Formation.” <i>Biology
    Direct</i>, vol. 1, BioMed Central, 2006, doi:<a href="https://doi.org/10.1186/1745-6150-1-31">10.1186/1745-6150-1-31</a>.
  short: F. Kondrashov, E. Koonin, I. Morgunov, T. Finogenova, M. Kondrashova, Biology
    Direct 1 (2006).
date_created: 2018-12-11T11:48:56Z
date_published: 2006-10-23T00:00:00Z
date_updated: 2021-01-12T08:20:31Z
day: '23'
doi: 10.1186/1745-6150-1-31
extern: 1
intvolume: '         1'
license: https://creativecommons.org/licenses/by/4.0/
month: '10'
publication: Biology Direct
publication_status: published
publisher: BioMed Central
publist_id: '6778'
quality_controlled: 0
status: public
title: Evolution of glyoxylate cycle enzymes in Metazoa Evidence of multiple horizontal
  transfer events and pseudogene formation
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
volume: 1
year: '2006'
...
---
_id: '869'
abstract:
- lang: eng
  text: The impact of synonymous nucleotide substitutions on fitness in mammals remains
    controversial. Despite some indications of selective constraint, synonymous sites
    are often assumed to be neutral, and the rate of their evolution is used as a
    proxy for mutation rate. We subdivide all sites into four classes in terms of
    the mutable CpG context, nonCpG, postC, preG, and postCpreG, and compare four-fold
    synonymous sites and intron sites residing outside transposable elements. The
    distribution of the rate of evolution across all synonymous sites is trimodal.
    Rate of evolution at nonCpG synonymous sites, not preceded by C and not followed
    by G, is ∼10% below that at such intron sites. In contrast, rate of evolution
    at postCpreG synonymous sites is ∼30% above that at such intron sites. Finally,
    synonymous and intron postC and preG sites evolve at similar rates. The relationship
    between the levels of polymorphism at the corresponding synonymous and intron
    sites is very similar to that between their rates of evolution. Within every class,
    synonymous sites are occupied by G or C much more often than intron sites, whose
    nucleotide composition is consistent with neutral mutation-drift equilibrium.
    These patterns suggest that synonymous sites are under weak selection in favor
    of G and C, with the average coefficient s∼0.25/Ne∼10-5, where Ne is the effective
    population size. Such selection decelerates evolution and reduces variability
    at sites with symmetric mutation, but has the opposite effects at sites where
    the favored nucleotides are more mutable. The amino-acid composition of proteins
    dictates that many synonymous sites are CpGprone, which causes them, on average,
    to evolve faster and to be more polymorphic than intron sites. An average genotype
    carries ∼107 suboptimal nucleotides at synonymous sites, implying synergistic
    epistasis in selection against them.
acknowledgement: This research was supported in part by the Intramural Research Program
  of the NIH, National Library of Medicine.
author:
- first_name: Fyodor
  full_name: Fyodor Kondrashov
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
- first_name: Aleksey
  full_name: Ogurtsov, Aleksey Yu
  last_name: Ogurtsov
- first_name: Alexey
  full_name: Kondrashov, Alexey S
  last_name: Kondrashov
citation:
  ama: Kondrashov F, Ogurtsov A, Kondrashov A. Selection in favor of nucleotides G
    and C diversifies evolution rates and levels of polymorphism at mammalian synonymous
    sites. <i>Journal of Theoretical Biology</i>. 2006;240(4):616-626. doi:<a href="https://doi.org/10.1016/j.jtbi.2005.10.020">10.1016/j.jtbi.2005.10.020</a>
  apa: Kondrashov, F., Ogurtsov, A., &#38; Kondrashov, A. (2006). Selection in favor
    of nucleotides G and C diversifies evolution rates and levels of polymorphism
    at mammalian synonymous sites. <i>Journal of Theoretical Biology</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.jtbi.2005.10.020">https://doi.org/10.1016/j.jtbi.2005.10.020</a>
  chicago: Kondrashov, Fyodor, Aleksey Ogurtsov, and Alexey Kondrashov. “Selection
    in Favor of Nucleotides G and C Diversifies Evolution Rates and Levels of Polymorphism
    at Mammalian Synonymous Sites.” <i>Journal of Theoretical Biology</i>. Elsevier,
    2006. <a href="https://doi.org/10.1016/j.jtbi.2005.10.020">https://doi.org/10.1016/j.jtbi.2005.10.020</a>.
  ieee: F. Kondrashov, A. Ogurtsov, and A. Kondrashov, “Selection in favor of nucleotides
    G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous
    sites,” <i>Journal of Theoretical Biology</i>, vol. 240, no. 4. Elsevier, pp.
    616–626, 2006.
  ista: Kondrashov F, Ogurtsov A, Kondrashov A. 2006. Selection in favor of nucleotides
    G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous
    sites. Journal of Theoretical Biology. 240(4), 616–626.
  mla: Kondrashov, Fyodor, et al. “Selection in Favor of Nucleotides G and C Diversifies
    Evolution Rates and Levels of Polymorphism at Mammalian Synonymous Sites.” <i>Journal
    of Theoretical Biology</i>, vol. 240, no. 4, Elsevier, 2006, pp. 616–26, doi:<a
    href="https://doi.org/10.1016/j.jtbi.2005.10.020">10.1016/j.jtbi.2005.10.020</a>.
  short: F. Kondrashov, A. Ogurtsov, A. Kondrashov, Journal of Theoretical Biology
    240 (2006) 616–626.
date_created: 2018-12-11T11:48:56Z
date_published: 2006-06-21T00:00:00Z
date_updated: 2021-01-12T08:20:33Z
day: '21'
doi: 10.1016/j.jtbi.2005.10.020
extern: 1
intvolume: '       240'
issue: '4'
month: '06'
page: 616 - 626
publication: Journal of Theoretical Biology
publication_status: published
publisher: Elsevier
publist_id: '6779'
quality_controlled: 0
status: public
title: Selection in favor of nucleotides G and C diversifies evolution rates and levels
  of polymorphism at mammalian synonymous sites
type: journal_article
volume: 240
year: '2006'
...
---
_id: '873'
abstract:
- lang: eng
  text: New genes commonly appear through complete or partial duplications of pre-existing
    genes. Duplications of long DNA segments are constantly produced by rare mutations,
    may become fixed in a population by selection or random drift, and are subject
    to divergent evolution of the paralogous sequences after fixation, although gene
    conversion can impede this process. New data shed some light on each of these
    processes. Mutations which involve duplications can occur through at least two
    different mechanisms, backward strand slippage during DNA replication and unequal
    crossing-over. The background rate of duplication of a complete gene in humans
    is 10-9-10-10 per generation, although many genes located within hot-spots of
    large-scale mutation are duplicated much more often. Many gene duplications affect
    fitness strongly, and are responsible, through gene dosage effects, for a number
    of genetic diseases. However, high levels of intrapopulation polymorphism caused
    by presence or absence of long, gene-containing DNA segments imply that some duplications
    are not under strong selection. The polymorphism to fixation ratios appear to
    be approximately the same for gene duplications and for presumably selectively
    neutral nucleotide substitutions, which, according to the McDonald-Kreitman test,
    is consistent with selective neutrality of duplications. However, this pattern
    can also be due to negative selection against most of segregating duplications
    and positive selection for at least some duplications which become fixed. Patterns
    in post-fixation evolution of duplicated genes do not easily reveal the causes
    of fixations. Many gene duplications which became fixed recently in a variety
    of organisms were positively selected because the increased expression of the
    corresponding genes was beneficial. The effects of gene dosage provide a unified
    framework for studying all phases of the life history of a gene duplication. Application
    of well-known methods of evolutionary genetics to accumulating data on new, polymorphic,
    and fixed duplication will enhance our understanding of the role of natural selection
    in the evolution by gene duplication.
author:
- first_name: Fyodor
  full_name: Fyodor Kondrashov
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
- first_name: Alexey
  full_name: Kondrashov, Alexey S
  last_name: Kondrashov
citation:
  ama: Kondrashov F, Kondrashov A. Role of selection in fixation of gene duplications.
    <i>Journal of Theoretical Biology</i>. 2006;239(2):141-151. doi:<a href="https://doi.org/10.1016/j.jtbi.2005.08.033">10.1016/j.jtbi.2005.08.033</a>
  apa: Kondrashov, F., &#38; Kondrashov, A. (2006). Role of selection in fixation
    of gene duplications. <i>Journal of Theoretical Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.jtbi.2005.08.033">https://doi.org/10.1016/j.jtbi.2005.08.033</a>
  chicago: Kondrashov, Fyodor, and Alexey Kondrashov. “Role of Selection in Fixation
    of Gene Duplications.” <i>Journal of Theoretical Biology</i>. Elsevier, 2006.
    <a href="https://doi.org/10.1016/j.jtbi.2005.08.033">https://doi.org/10.1016/j.jtbi.2005.08.033</a>.
  ieee: F. Kondrashov and A. Kondrashov, “Role of selection in fixation of gene duplications,”
    <i>Journal of Theoretical Biology</i>, vol. 239, no. 2. Elsevier, pp. 141–151,
    2006.
  ista: Kondrashov F, Kondrashov A. 2006. Role of selection in fixation of gene duplications.
    Journal of Theoretical Biology. 239(2), 141–151.
  mla: Kondrashov, Fyodor, and Alexey Kondrashov. “Role of Selection in Fixation of
    Gene Duplications.” <i>Journal of Theoretical Biology</i>, vol. 239, no. 2, Elsevier,
    2006, pp. 141–51, doi:<a href="https://doi.org/10.1016/j.jtbi.2005.08.033">10.1016/j.jtbi.2005.08.033</a>.
  short: F. Kondrashov, A. Kondrashov, Journal of Theoretical Biology 239 (2006) 141–151.
date_created: 2018-12-11T11:48:57Z
date_published: 2006-03-21T00:00:00Z
date_updated: 2021-01-12T08:20:47Z
day: '21'
doi: 10.1016/j.jtbi.2005.08.033
extern: 1
intvolume: '       239'
issue: '2'
month: '03'
page: 141 - 151
publication: Journal of Theoretical Biology
publication_status: published
publisher: Elsevier
publist_id: '6773'
quality_controlled: 0
status: public
title: Role of selection in fixation of gene duplications
type: journal_article
volume: 239
year: '2006'
...
---
_id: '903'
abstract:
- lang: eng
  text: 'Background: Carcinogenesis typically involves multiple somatic mutations
    in caretaker (DNA repair) and gatekeeper (tumor suppressors and oncogenes) genes.
    Analysis of mutation spectra of the tumor suppressor that is most commonly mutated
    in human cancers, p53, unexpectedly suggested that somatic evolution of the p53
    gene during tumorigenesis is dominated by positive selection for gain of function.
    This conclusion is supported by accumulating experimental evidence of evolution
    of new functions of p53 in tumors. These findings prompted a genome-wide analysis
    of possible positive selection during tumor evolution. Methods: A comprehensive
    analysis of probable somatic mutations in the sequences of Expressed Sequence
    Tags (ESTs) from malignant tumors and normal tissues was performed in order to
    access the prevalence of positive selection in cancer evolution. For each EST,
    the numbers of synonymous and non-synonymous substitutions were calculated. In
    order to identify genes with a signature of positive selection in cancers, these
    numbers were compared to: i) expected numbers and ii) the numbers for the respective
    genes in the ESTs from normal tissues. Results: We identified 112 genes with a
    signature of positive selection in cancers, i.e., a significantly elevated ratio
    of non-synonymous to synonymous substitutions, in tumors as compared to 37 such
    genes in an approximately equal-sized EST collection from normal tissues. A substantial
    fraction of the tumor-specific positive-selection candidates have experimentally
    demonstrated or strongly predicted links to cancer. Conclusion: The results of
    EST analysis should be interpreted with extreme caution given the noise introduced
    by sequencing errors and undetected polymorphisms. Furthermore, an inherent limitation
    of EST analysis is that multiple mutations amenable to statistical analysis can
    be detected only in relatively highly expressed genes. Nevertheless, the present
    results suggest that positive selection might affect a substantial number of genes
    during tumorigenic somatic evolution.'
acknowledgement: This work was supported by the Intramural Research Program of the
  National Library of Medicine at the National Institutes of Health/DHHS. FAK is an
  NSF Graduate Fellow. We thank Yuri Pavlov for helpful discussions.
author:
- first_name: Vladimir
  full_name: Babenko, Vladimir N
  last_name: Babenko
- first_name: Malay
  full_name: Basu, Malay K
  last_name: Basu
- first_name: Fyodor
  full_name: Fyodor Kondrashov
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
- first_name: Igor
  full_name: Rogozin, Igor B
  last_name: Rogozin
- first_name: Eugene
  full_name: Koonin, Eugene V
  last_name: Koonin
citation:
  ama: Babenko V, Basu M, Kondrashov F, Rogozin I, Koonin E. Signs of positive selection
    of somatic mutations in human cancers detected by EST sequence analysis. <i>BMC
    Cancer</i>. 2006;6. doi:<a href="https://doi.org/10.1186/1471-2407-6-36">10.1186/1471-2407-6-36</a>
  apa: Babenko, V., Basu, M., Kondrashov, F., Rogozin, I., &#38; Koonin, E. (2006).
    Signs of positive selection of somatic mutations in human cancers detected by
    EST sequence analysis. <i>BMC Cancer</i>. BioMed Central. <a href="https://doi.org/10.1186/1471-2407-6-36">https://doi.org/10.1186/1471-2407-6-36</a>
  chicago: Babenko, Vladimir, Malay Basu, Fyodor Kondrashov, Igor Rogozin, and Eugene
    Koonin. “Signs of Positive Selection of Somatic Mutations in Human Cancers Detected
    by EST Sequence Analysis.” <i>BMC Cancer</i>. BioMed Central, 2006. <a href="https://doi.org/10.1186/1471-2407-6-36">https://doi.org/10.1186/1471-2407-6-36</a>.
  ieee: V. Babenko, M. Basu, F. Kondrashov, I. Rogozin, and E. Koonin, “Signs of positive
    selection of somatic mutations in human cancers detected by EST sequence analysis,”
    <i>BMC Cancer</i>, vol. 6. BioMed Central, 2006.
  ista: Babenko V, Basu M, Kondrashov F, Rogozin I, Koonin E. 2006. Signs of positive
    selection of somatic mutations in human cancers detected by EST sequence analysis.
    BMC Cancer. 6.
  mla: Babenko, Vladimir, et al. “Signs of Positive Selection of Somatic Mutations
    in Human Cancers Detected by EST Sequence Analysis.” <i>BMC Cancer</i>, vol. 6,
    BioMed Central, 2006, doi:<a href="https://doi.org/10.1186/1471-2407-6-36">10.1186/1471-2407-6-36</a>.
  short: V. Babenko, M. Basu, F. Kondrashov, I. Rogozin, E. Koonin, BMC Cancer 6 (2006).
date_created: 2018-12-11T11:49:07Z
date_published: 2006-02-09T00:00:00Z
date_updated: 2021-01-12T08:21:47Z
day: '09'
doi: 10.1186/1471-2407-6-36
extern: 1
intvolume: '         6'
month: '02'
publication: BMC Cancer
publication_status: published
publisher: BioMed Central
publist_id: '6744'
quality_controlled: 0
status: public
title: Signs of positive selection of somatic mutations in human cancers detected
  by EST sequence analysis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
volume: 6
year: '2006'
...
---
_id: '9505'
abstract:
- lang: eng
  text: 'Cytosine methylation, a common form of DNA modification that antagonizes
    transcription, is found at transposons and repeats in vertebrates, plants and
    fungi. Here we have mapped DNA methylation in the entire Arabidopsis thaliana
    genome at high resolution. DNA methylation covers transposons and is present within
    a large fraction of A. thaliana genes. Methylation within genes is conspicuously
    biased away from gene ends, suggesting a dependence on RNA polymerase transit.
    Genic methylation is strongly influenced by transcription: moderately transcribed
    genes are most likely to be methylated, whereas genes at either extreme are least
    likely. In turn, transcription is influenced by methylation: short methylated
    genes are poorly expressed, and loss of methylation in the body of a gene leads
    to enhanced transcription. Our results indicate that genic transcription and DNA
    methylation are closely interwoven processes.'
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
  full_name: Zilberman, Daniel
  id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
  last_name: Zilberman
  orcid: 0000-0002-0123-8649
- first_name: Mary
  full_name: Gehring, Mary
  last_name: Gehring
- first_name: Robert K.
  full_name: Tran, Robert K.
  last_name: Tran
- first_name: Tracy
  full_name: Ballinger, Tracy
  last_name: Ballinger
- first_name: Steven
  full_name: Henikoff, Steven
  last_name: Henikoff
citation:
  ama: Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S. Genome-wide analysis
    of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation
    and transcription. <i>Nature Genetics</i>. 2006;39(1):61-69. doi:<a href="https://doi.org/10.1038/ng1929">10.1038/ng1929</a>
  apa: Zilberman, D., Gehring, M., Tran, R. K., Ballinger, T., &#38; Henikoff, S.
    (2006). Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers
    an interdependence between methylation and transcription. <i>Nature Genetics</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/ng1929">https://doi.org/10.1038/ng1929</a>
  chicago: Zilberman, Daniel, Mary Gehring, Robert K. Tran, Tracy Ballinger, and Steven
    Henikoff. “Genome-Wide Analysis of Arabidopsis Thaliana DNA Methylation Uncovers
    an Interdependence between Methylation and Transcription.” <i>Nature Genetics</i>.
    Nature Publishing Group, 2006. <a href="https://doi.org/10.1038/ng1929">https://doi.org/10.1038/ng1929</a>.
  ieee: D. Zilberman, M. Gehring, R. K. Tran, T. Ballinger, and S. Henikoff, “Genome-wide
    analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between
    methylation and transcription,” <i>Nature Genetics</i>, vol. 39, no. 1. Nature
    Publishing Group, pp. 61–69, 2006.
  ista: Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S. 2006. Genome-wide
    analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between
    methylation and transcription. Nature Genetics. 39(1), 61–69.
  mla: Zilberman, Daniel, et al. “Genome-Wide Analysis of Arabidopsis Thaliana DNA
    Methylation Uncovers an Interdependence between Methylation and Transcription.”
    <i>Nature Genetics</i>, vol. 39, no. 1, Nature Publishing Group, 2006, pp. 61–69,
    doi:<a href="https://doi.org/10.1038/ng1929">10.1038/ng1929</a>.
  short: D. Zilberman, M. Gehring, R.K. Tran, T. Ballinger, S. Henikoff, Nature Genetics
    39 (2006) 61–69.
date_created: 2021-06-07T12:19:31Z
date_published: 2006-11-26T00:00:00Z
date_updated: 2021-12-14T09:02:51Z
day: '26'
department:
- _id: DaZi
doi: 10.1038/ng1929
extern: '1'
external_id:
  pmid:
  - '17128275'
intvolume: '        39'
issue: '1'
language:
- iso: eng
month: '11'
oa_version: None
page: 61-69
pmid: 1
publication: Nature Genetics
publication_identifier:
  eissn:
  - 1546-1718
  issn:
  - 1061-4036
publication_status: published
publisher: Nature Publishing Group
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence
  between methylation and transcription
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 39
year: '2006'
...
---
_id: '573'
abstract:
- lang: eng
  text: 'Mitchison and Jozsa recently suggested that the &quot;chained-Zeno&quot;
    counterfactual computation protocol recently proposed by Hosten et al. is counterfactual
    for only one output of the computer. This claim was based on the existing abstract
    algebraic definition of counterfactual computation, and indeed according to this
    definition, their argument is correct. However, a more general definition (physically
    adequate) for counterfactual computation is implicitly assumed by Hosten et. al.
    Here we explain in detail why the protocol is counterfactual and how the &quot;history
    tracking&quot; method of the existing description inadequately represents the
    physics underlying the protocol. Consequently, we propose a modified definition
    of counterfactual computation. Finally, we comment on one of the most interesting
    aspects of the error-correcting protocol. '
article_processing_charge: No
arxiv: 1
author:
- first_name: Onur
  full_name: Hosten, Onur
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Matthew
  full_name: Rakher, Matthew
  last_name: Rakher
- first_name: Julio
  full_name: Barreiro, Julio
  last_name: Barreiro
- first_name: Nicholas
  full_name: Peters, Nicholas
  last_name: Peters
- first_name: Paul
  full_name: Kwiat, Paul
  last_name: Kwiat
citation:
  ama: Hosten O, Rakher M, Barreiro J, Peters N, Kwiat P. Counterfactual computation
    revisited. 2006.
  apa: Hosten, O., Rakher, M., Barreiro, J., Peters, N., &#38; Kwiat, P. (2006). Counterfactual
    computation revisited. ArXiv.
  chicago: Hosten, Onur, Matthew Rakher, Julio Barreiro, Nicholas Peters, and Paul
    Kwiat. “Counterfactual Computation Revisited.” ArXiv, 2006.
  ieee: O. Hosten, M. Rakher, J. Barreiro, N. Peters, and P. Kwiat, “Counterfactual
    computation revisited.” ArXiv, 2006.
  ista: Hosten O, Rakher M, Barreiro J, Peters N, Kwiat P. 2006. Counterfactual computation
    revisited.
  mla: Hosten, Onur, et al. <i>Counterfactual Computation Revisited</i>. ArXiv, 2006.
  short: O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, (2006).
date_created: 2018-12-11T11:47:16Z
date_published: 2006-08-06T00:00:00Z
date_updated: 2020-05-12T08:23:52Z
day: '06'
extern: '1'
external_id:
  arxiv:
  - '0607101'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/quant-ph/0607101
month: '08'
oa: 1
oa_version: Preprint
page: '12'
publication_status: published
publisher: ArXiv
publist_id: '7241'
status: public
title: Counterfactual computation revisited
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2006'
...
---
_id: '574'
abstract:
- lang: eng
  text: 'Vaidman, in a recent article adopts the method of ''quantum weak measurements
    in pre- and postselected ensembles'' to ascertain whether or not the chained-Zeno
    counterfactual computation scheme proposed by Hosten et al. is counterfactual;
    which has been the topic of a debate on the definition of counterfactuality. We
    disagree with his conclusion, which brings up some interesting aspects of quantum
    weak measurements and some concerns about the way they are interpreted. '
article_processing_charge: No
arxiv: 1
author:
- first_name: Onur
  full_name: Hosten, Onur
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Paul
  full_name: Kwiat, Paul
  last_name: Kwiat
citation:
  ama: Hosten O, Kwiat P. Weak measurements and counterfactual computation. 2006.
  apa: Hosten, O., &#38; Kwiat, P. (2006). Weak measurements and counterfactual computation.
    ArXiv.
  chicago: Hosten, Onur, and Paul Kwiat. “Weak Measurements and Counterfactual Computation.”
    ArXiv, 2006.
  ieee: O. Hosten and P. Kwiat, “Weak measurements and counterfactual computation.”
    ArXiv, 2006.
  ista: Hosten O, Kwiat P. 2006. Weak measurements and counterfactual computation.
  mla: Hosten, Onur, and Paul Kwiat. <i>Weak Measurements and Counterfactual Computation</i>.
    ArXiv, 2006.
  short: O. Hosten, P. Kwiat, (2006).
date_created: 2018-12-11T11:47:16Z
date_published: 2006-12-19T00:00:00Z
date_updated: 2020-05-12T08:18:01Z
day: '19'
extern: '1'
external_id:
  arxiv:
  - '0612159'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/quant-ph/0612159
month: '12'
oa: 1
oa_version: Preprint
page: '2'
publication_status: published
publisher: ArXiv
publist_id: '7240'
status: public
title: Weak measurements and counterfactual computation
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2006'
...
---
_id: '577'
abstract:
- lang: eng
  text: Visible light photon counters (VLPCs) and solid-state photomultipliers (SSPMs)
    are high-efficiency single-photon detectors which have multi-photon counting capability.
    While both the VLPCs and the SSPMs have inferred internal quantum efficiencies
    above 93%, the actual measured values for both the detectors were in fact limited
    to less than 88%, attributed to in-coupling losses. We are currently improving
    this overall detection efficiency via a) custom anti-reflection coating the detectors
    and the in-coupling fibers, b) implementing a novel cryogenic design to reduce
    transmission losses and, c) using low-noise electronics to obtain a better signal-to-noise
    ratio.
alternative_title:
- Proceedings of SPIE
author:
- first_name: Radhika
  full_name: Rangarajan, Radhika
  last_name: Rangarajan
- first_name: Joseph
  full_name: Altepeter, Joseph B
  last_name: Altepeter
- first_name: Evan
  full_name: Jeffrey, Evan R
  last_name: Jeffrey
- first_name: Micah
  full_name: Stoutimore, Micah J
  last_name: Stoutimore
- first_name: Nicholas
  full_name: Peters, Nicholas A
  last_name: Peters
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Paul
  full_name: Kwiat, Paul G
  last_name: Kwiat
citation:
  ama: 'Rangarajan R, Altepeter J, Jeffrey E, et al. High-efficiency single-photon
    detectors. In: Vol 6372. SPIE; 2006. doi:<a href="https://doi.org/10.1117/12.686117">10.1117/12.686117</a>'
  apa: Rangarajan, R., Altepeter, J., Jeffrey, E., Stoutimore, M., Peters, N., Hosten,
    O., &#38; Kwiat, P. (2006). High-efficiency single-photon detectors (Vol. 6372).
    Presented at the Unknown (978-081946470-5), SPIE. <a href="https://doi.org/10.1117/12.686117">https://doi.org/10.1117/12.686117</a>
  chicago: Rangarajan, Radhika, Joseph Altepeter, Evan Jeffrey, Micah Stoutimore,
    Nicholas Peters, Onur Hosten, and Paul Kwiat. “High-Efficiency Single-Photon Detectors,”
    Vol. 6372. SPIE, 2006. <a href="https://doi.org/10.1117/12.686117">https://doi.org/10.1117/12.686117</a>.
  ieee: R. Rangarajan <i>et al.</i>, “High-efficiency single-photon detectors,” presented
    at the Unknown (978-081946470-5), 2006, vol. 6372.
  ista: Rangarajan R, Altepeter J, Jeffrey E, Stoutimore M, Peters N, Hosten O, Kwiat
    P. 2006. High-efficiency single-photon detectors. Unknown (978-081946470-5), Proceedings
    of SPIE, vol. 6372.
  mla: Rangarajan, Radhika, et al. <i>High-Efficiency Single-Photon Detectors</i>.
    Vol. 6372, SPIE, 2006, doi:<a href="https://doi.org/10.1117/12.686117">10.1117/12.686117</a>.
  short: R. Rangarajan, J. Altepeter, E. Jeffrey, M. Stoutimore, N. Peters, O. Hosten,
    P. Kwiat, in:, SPIE, 2006.
conference:
  name: Unknown (978-081946470-5)
date_created: 2018-12-11T11:47:17Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2020-07-14T12:47:11Z
day: '01'
doi: 10.1117/12.686117
extern: 1
intvolume: '      6372'
month: '01'
publication_status: published
publisher: SPIE
publist_id: '7233'
quality_controlled: 0
status: public
title: High-efficiency single-photon detectors
type: conference
volume: 6372
year: '2006'
...
---
_id: '578'
abstract:
- lang: eng
  text: A source of single photons allows secure quantum key distribution, in addition,
    to being a critical resource for linear optics quantum computing. We describe
    our progress on deterministically creating single photons from spontaneous parametric
    downconversion, an extension of the Pittman, Jacobs and Franson scheme [Phys.
    Rev A, v66, 042303 (2002)]. Their idea was to conditionally prepare single photons
    by measuring one member of a spontaneously emitted photon pair and storing the
    remaining conditionally prepared photon until a predetermined time, when it would
    be &quot;deterministically&quot; released from storage. Our approach attempts
    to improve upon this by recycling the pump pulse in order to decrease the possibility
    of multiple-pair generation, while maintaining a high probability of producing
    a single pair. Many of the challenges we discuss are central to other quantum
    information technologies, including the need for low-loss optical storage, switching
    and detection, and fast feed-forward control.
alternative_title:
- Proc. SPIE
author:
- first_name: Nicholas
  full_name: Peters, Nicholas A
  last_name: Peters
- first_name: Keith
  full_name: Arnold, Keith J
  last_name: Arnold
- first_name: Aaron
  full_name: VanDevender, Aaron P
  last_name: Vandevender
- first_name: Evan
  full_name: Jeffrey, Evan R
  last_name: Jeffrey
- first_name: Radhika
  full_name: Rangarajan, Radhika
  last_name: Rangarajan
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Julio
  full_name: Barreiro, Julio T
  last_name: Barreiro
- first_name: Joseph
  full_name: Altepeter, Joseph B
  last_name: Altepeter
- first_name: Paul
  full_name: Kwiat, Paul G
  last_name: Kwiat
citation:
  ama: 'Peters N, Arnold K, Vandevender A, et al. Towards a quasi-deterministic single-photon
    source. In: Vol 6305. SPIE; 2006. doi:<a href="https://doi.org/10.1117/12.684702">10.1117/12.684702</a>'
  apa: Peters, N., Arnold, K., Vandevender, A., Jeffrey, E., Rangarajan, R., Hosten,
    O., … Kwiat, P. (2006). Towards a quasi-deterministic single-photon source (Vol.
    6305). Presented at the Quantum Communications and Quantum Imaging, SPIE. <a href="https://doi.org/10.1117/12.684702">https://doi.org/10.1117/12.684702</a>
  chicago: Peters, Nicholas, Keith Arnold, Aaron Vandevender, Evan Jeffrey, Radhika
    Rangarajan, Onur Hosten, Julio Barreiro, Joseph Altepeter, and Paul Kwiat. “Towards
    a Quasi-Deterministic Single-Photon Source,” Vol. 6305. SPIE, 2006. <a href="https://doi.org/10.1117/12.684702">https://doi.org/10.1117/12.684702</a>.
  ieee: N. Peters <i>et al.</i>, “Towards a quasi-deterministic single-photon source,”
    presented at the Quantum Communications and Quantum Imaging, 2006, vol. 6305.
  ista: Peters N, Arnold K, Vandevender A, Jeffrey E, Rangarajan R, Hosten O, Barreiro
    J, Altepeter J, Kwiat P. 2006. Towards a quasi-deterministic single-photon source.
    Quantum Communications and Quantum Imaging, Proc. SPIE, vol. 6305.
  mla: Peters, Nicholas, et al. <i>Towards a Quasi-Deterministic Single-Photon Source</i>.
    Vol. 6305, SPIE, 2006, doi:<a href="https://doi.org/10.1117/12.684702">10.1117/12.684702</a>.
  short: N. Peters, K. Arnold, A. Vandevender, E. Jeffrey, R. Rangarajan, O. Hosten,
    J. Barreiro, J. Altepeter, P. Kwiat, in:, SPIE, 2006.
conference:
  name: Quantum Communications and Quantum Imaging
date_created: 2018-12-11T11:47:17Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2020-07-14T12:47:11Z
day: '01'
doi: 10.1117/12.684702
extern: 1
intvolume: '      6305'
month: '01'
publication_status: published
publisher: SPIE
publist_id: '7234'
quality_controlled: 0
status: public
title: Towards a quasi-deterministic single-photon source
type: conference
volume: 6305
year: '2006'
...
---
_id: '579'
abstract:
- lang: eng
  text: 'The logic underlying the coherent nature of quantum information processing
    often deviates from intuitive reasoning, leading to surprising effects. Counterfactual
    computation constitutes a striking example: the potential outcome of a quantum
    computation can be inferred, even if the computer is not run 1. Relying on similar
    arguments to interaction-free measurements 2 (or quantum interrogation3), counterfactual
    computation is accomplished by putting the computer in a superposition of ''running''
    and ''not running'' states, and then interfering the two histories. Conditional
    on the as-yet-unknown outcome of the computation, it is sometimes possible to
    counterfactually infer information about the solution. Here we demonstrate counterfactual
    computation, implementing Grover''s search algorithm with an all-optical approach4.
    It was believed that the overall probability of such counterfactual inference
    is intrinsically limited1,5, so that it could not perform better on average than
    random guesses. However, using a novel ''chained'' version of the quantum Zeno
    effect6, we show how to boost the counterfactual inference probability to unity,
    thereby beating the random guessing limit. Our methods are general and apply to
    any physical system, as illustrated by a discussion of trapped-ion systems. Finally,
    we briefly show that, in certain circumstances, counterfactual computation can
    eliminate errors induced by decoherence. '
author:
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Matthew
  full_name: Rakher, Matthew T
  last_name: Rakher
- first_name: Julio
  full_name: Barreiro, Julio T
  last_name: Barreiro
- first_name: Nicholas
  full_name: Peters, Nicholas A
  last_name: Peters
- first_name: Paul
  full_name: Kwiat, Paul G
  last_name: Kwiat
citation:
  ama: Hosten O, Rakher M, Barreiro J, Peters N, Kwiat P. Counterfactual quantum computation
    through quantum interrogation. <i>Nature</i>. 2006;439(7079):949-952. doi:<a href="https://doi.org/10.1038/nature04523">10.1038/nature04523</a>
  apa: Hosten, O., Rakher, M., Barreiro, J., Peters, N., &#38; Kwiat, P. (2006). Counterfactual
    quantum computation through quantum interrogation. <i>Nature</i>. Nature Publishing
    Group. <a href="https://doi.org/10.1038/nature04523">https://doi.org/10.1038/nature04523</a>
  chicago: Hosten, Onur, Matthew Rakher, Julio Barreiro, Nicholas Peters, and Paul
    Kwiat. “Counterfactual Quantum Computation through Quantum Interrogation.” <i>Nature</i>.
    Nature Publishing Group, 2006. <a href="https://doi.org/10.1038/nature04523">https://doi.org/10.1038/nature04523</a>.
  ieee: O. Hosten, M. Rakher, J. Barreiro, N. Peters, and P. Kwiat, “Counterfactual
    quantum computation through quantum interrogation,” <i>Nature</i>, vol. 439, no.
    7079. Nature Publishing Group, pp. 949–952, 2006.
  ista: Hosten O, Rakher M, Barreiro J, Peters N, Kwiat P. 2006. Counterfactual quantum
    computation through quantum interrogation. Nature. 439(7079), 949–952.
  mla: Hosten, Onur, et al. “Counterfactual Quantum Computation through Quantum Interrogation.”
    <i>Nature</i>, vol. 439, no. 7079, Nature Publishing Group, 2006, pp. 949–52,
    doi:<a href="https://doi.org/10.1038/nature04523">10.1038/nature04523</a>.
  short: O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, Nature 439 (2006)
    949–952.
date_created: 2018-12-11T11:47:18Z
date_published: 2006-02-23T00:00:00Z
date_updated: 2021-01-12T08:03:29Z
day: '23'
doi: 10.1038/nature04523
extern: 1
intvolume: '       439'
issue: '7079'
month: '02'
page: 949 - 952
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '7235'
quality_controlled: 0
status: public
title: Counterfactual quantum computation through quantum interrogation
type: journal_article
volume: 439
year: '2006'
...
---
_id: '583'
abstract:
- lang: eng
  text: Visible light photon counters (VLPCs) and solid-state photomultipliers (SSPMs)
    facilitate efficient single-photon detection. We are attempting to improve their
    efficiency, previously limited to &lt; 88% by coupling losses, via anti-reflection
    coatings, better electronics and cryogenics.
author:
- first_name: Radhika
  full_name: Rangarajan, Radhika
  last_name: Rangarajan
- first_name: Nicholas
  full_name: Peters, Nicholas A
  last_name: Peters
- first_name: Onur
  full_name: Onur Hosten
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
- first_name: Joseph
  full_name: Altepeter, Joseph B
  last_name: Altepeter
- first_name: Evan
  full_name: Jeffrey, Evan R
  last_name: Jeffrey
- first_name: Paul
  full_name: Kwiat, Paul G
  last_name: Kwiat
citation:
  ama: 'Rangarajan R, Peters N, Hosten O, Altepeter J, Jeffrey E, Kwiat P. Improved
    single-photon detection. In: IEEE; 2006. doi:<a href="https://doi.org/10.1109/CLEO.2006.4628641">10.1109/CLEO.2006.4628641</a>'
  apa: 'Rangarajan, R., Peters, N., Hosten, O., Altepeter, J., Jeffrey, E., &#38;
    Kwiat, P. (2006). Improved single-photon detection. Presented at the CLEO/QELS:
    Conference on Lasers and Electro-Optics / Quantum Electronics and Laser Science
    Conference, IEEE. <a href="https://doi.org/10.1109/CLEO.2006.4628641">https://doi.org/10.1109/CLEO.2006.4628641</a>'
  chicago: Rangarajan, Radhika, Nicholas Peters, Onur Hosten, Joseph Altepeter, Evan
    Jeffrey, and Paul Kwiat. “Improved Single-Photon Detection.” IEEE, 2006. <a href="https://doi.org/10.1109/CLEO.2006.4628641">https://doi.org/10.1109/CLEO.2006.4628641</a>.
  ieee: 'R. Rangarajan, N. Peters, O. Hosten, J. Altepeter, E. Jeffrey, and P. Kwiat,
    “Improved single-photon detection,” presented at the CLEO/QELS: Conference on
    Lasers and Electro-Optics / Quantum Electronics and Laser Science Conference,
    2006.'
  ista: 'Rangarajan R, Peters N, Hosten O, Altepeter J, Jeffrey E, Kwiat P. 2006.
    Improved single-photon detection. CLEO/QELS: Conference on Lasers and Electro-Optics
    / Quantum Electronics and Laser Science Conference.'
  mla: Rangarajan, Radhika, et al. <i>Improved Single-Photon Detection</i>. IEEE,
    2006, doi:<a href="https://doi.org/10.1109/CLEO.2006.4628641">10.1109/CLEO.2006.4628641</a>.
  short: R. Rangarajan, N. Peters, O. Hosten, J. Altepeter, E. Jeffrey, P. Kwiat,
    in:, IEEE, 2006.
conference:
  name: 'CLEO/QELS: Conference on Lasers and Electro-Optics / Quantum Electronics
    and Laser Science Conference'
date_created: 2018-12-11T11:47:19Z
date_published: 2006-01-01T00:00:00Z
date_updated: 2021-01-12T08:03:43Z
day: '01'
doi: 10.1109/CLEO.2006.4628641
extern: 1
month: '01'
publication_status: published
publisher: IEEE
publist_id: '7232'
quality_controlled: 0
status: public
title: Improved single-photon detection
type: conference
year: '2006'
...
---
_id: '6151'
author:
- first_name: Iris
  full_name: Salecker, Iris
  last_name: Salecker
- first_name: Michael
  full_name: Häusser, Michael
  last_name: Häusser
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: 'Salecker I, Häusser M, de Bono M. On the axonal road to circuit function and
    behaviour: Workshop on the assembly and function of neuronal circuits. <i>EMBO
    reports</i>. 2006;7(6):585-589. doi:<a href="https://doi.org/10.1038/sj.embor.7400713">10.1038/sj.embor.7400713</a>'
  apa: 'Salecker, I., Häusser, M., &#38; de Bono, M. (2006). On the axonal road to
    circuit function and behaviour: Workshop on the assembly and function of neuronal
    circuits. <i>EMBO Reports</i>. Wiley. <a href="https://doi.org/10.1038/sj.embor.7400713">https://doi.org/10.1038/sj.embor.7400713</a>'
  chicago: 'Salecker, Iris, Michael Häusser, and Mario de Bono. “On the Axonal Road
    to Circuit Function and Behaviour: Workshop on the Assembly and Function of Neuronal
    Circuits.” <i>EMBO Reports</i>. Wiley, 2006. <a href="https://doi.org/10.1038/sj.embor.7400713">https://doi.org/10.1038/sj.embor.7400713</a>.'
  ieee: 'I. Salecker, M. Häusser, and M. de Bono, “On the axonal road to circuit function
    and behaviour: Workshop on the assembly and function of neuronal circuits,” <i>EMBO
    reports</i>, vol. 7, no. 6. Wiley, pp. 585–589, 2006.'
  ista: 'Salecker I, Häusser M, de Bono M. 2006. On the axonal road to circuit function
    and behaviour: Workshop on the assembly and function of neuronal circuits. EMBO
    reports. 7(6), 585–589.'
  mla: 'Salecker, Iris, et al. “On the Axonal Road to Circuit Function and Behaviour:
    Workshop on the Assembly and Function of Neuronal Circuits.” <i>EMBO Reports</i>,
    vol. 7, no. 6, Wiley, 2006, pp. 585–89, doi:<a href="https://doi.org/10.1038/sj.embor.7400713">10.1038/sj.embor.7400713</a>.'
  short: I. Salecker, M. Häusser, M. de Bono, EMBO Reports 7 (2006) 585–589.
date_created: 2019-03-21T08:50:43Z
date_published: 2006-06-01T00:00:00Z
date_updated: 2021-01-12T08:06:23Z
day: '01'
doi: 10.1038/sj.embor.7400713
extern: '1'
external_id:
  pmid:
  - '16729018'
intvolume: '         7'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://europepmc.org/articles/pmc1479602
month: '06'
oa: 1
oa_version: Published Version
page: 585-589
pmid: 1
publication: EMBO reports
publication_identifier:
  issn:
  - 1469-221X
  - 1469-3178
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: 'On the axonal road to circuit function and behaviour: Workshop on the assembly
  and function of neuronal circuits'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2006'
...
---
_id: '6152'
author:
- first_name: Candida
  full_name: Rogers, Candida
  last_name: Rogers
- first_name: Annelie
  full_name: Persson, Annelie
  last_name: Persson
- first_name: Benny
  full_name: Cheung, Benny
  last_name: Cheung
- first_name: Mario
  full_name: de Bono, Mario
  id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
  last_name: de Bono
  orcid: 0000-0001-8347-0443
citation:
  ama: Rogers C, Persson A, Cheung B, de Bono M. Behavioral motifs and neural pathways
    coordinating O2 responses and aggregation in C. elegans. <i>Current Biology</i>.
    2006;16(7):649-659. doi:<a href="https://doi.org/10.1016/j.cub.2006.03.023">10.1016/j.cub.2006.03.023</a>
  apa: Rogers, C., Persson, A., Cheung, B., &#38; de Bono, M. (2006). Behavioral motifs
    and neural pathways coordinating O2 responses and aggregation in C. elegans. <i>Current
    Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2006.03.023">https://doi.org/10.1016/j.cub.2006.03.023</a>
  chicago: Rogers, Candida, Annelie Persson, Benny Cheung, and Mario de Bono. “Behavioral
    Motifs and Neural Pathways Coordinating O2 Responses and Aggregation in C. Elegans.”
    <i>Current Biology</i>. Elsevier, 2006. <a href="https://doi.org/10.1016/j.cub.2006.03.023">https://doi.org/10.1016/j.cub.2006.03.023</a>.
  ieee: C. Rogers, A. Persson, B. Cheung, and M. de Bono, “Behavioral motifs and neural
    pathways coordinating O2 responses and aggregation in C. elegans,” <i>Current
    Biology</i>, vol. 16, no. 7. Elsevier, pp. 649–659, 2006.
  ista: Rogers C, Persson A, Cheung B, de Bono M. 2006. Behavioral motifs and neural
    pathways coordinating O2 responses and aggregation in C. elegans. Current Biology.
    16(7), 649–659.
  mla: Rogers, Candida, et al. “Behavioral Motifs and Neural Pathways Coordinating
    O2 Responses and Aggregation in C. Elegans.” <i>Current Biology</i>, vol. 16,
    no. 7, Elsevier, 2006, pp. 649–59, doi:<a href="https://doi.org/10.1016/j.cub.2006.03.023">10.1016/j.cub.2006.03.023</a>.
  short: C. Rogers, A. Persson, B. Cheung, M. de Bono, Current Biology 16 (2006) 649–659.
date_created: 2019-03-21T09:15:27Z
date_published: 2006-04-04T00:00:00Z
date_updated: 2021-01-12T08:06:23Z
day: '04'
doi: 10.1016/j.cub.2006.03.023
extern: '1'
external_id:
  pmid:
  - '16581509'
intvolume: '        16'
issue: '7'
language:
- iso: eng
month: '04'
oa_version: None
page: 649-659
pmid: 1
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Behavioral motifs and neural pathways coordinating O2 responses and aggregation
  in C. elegans
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2006'
...
---
_id: '7326'
abstract:
- lang: eng
  text: 'Often the properties of a single cell are considered as representative for
    a complete polymer electrolyte fuel cell stack or even a fuel cell system. In
    some cases this comes close, however, in many real cases differences on several
    scales become important. Cell interaction phenomena in fuel cell stacks that arise
    from inequalities between adjacent cells are investigated in detail experimentally.
    For that, a specialized 2-cell stack with advanced localized diagnostics was developed.
    The results show that inequalities propagate by electrical coupling, inhomogeneous
    cell polarization and inducing in-plane current in the common bipolar plate. The
    effects of the different loss-mechanisms are analyzed and quantified. '
article_processing_charge: No
author:
- first_name: Felix N.
  full_name: Büchi, Felix N.
  last_name: Büchi
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Marco
  full_name: Santis, Marco
  last_name: Santis
citation:
  ama: 'Büchi FN, Freunberger SA, Santis M. What is learned beyond the scale of single
    cells? In: <i>ECS Transactions</i>. Vol 3. ECS; 2006:963-968. doi:<a href="https://doi.org/10.1149/1.2356215">10.1149/1.2356215</a>'
  apa: 'Büchi, F. N., Freunberger, S. A., &#38; Santis, M. (2006). What is learned
    beyond the scale of single cells? In <i>ECS Transactions</i> (Vol. 3, pp. 963–968).
    Cancun, Mexico: ECS. <a href="https://doi.org/10.1149/1.2356215">https://doi.org/10.1149/1.2356215</a>'
  chicago: Büchi, Felix N., Stefan Alexander Freunberger, and Marco Santis. “What
    Is Learned beyond the Scale of Single Cells?” In <i>ECS Transactions</i>, 3:963–68.
    ECS, 2006. <a href="https://doi.org/10.1149/1.2356215">https://doi.org/10.1149/1.2356215</a>.
  ieee: F. N. Büchi, S. A. Freunberger, and M. Santis, “What is learned beyond the
    scale of single cells?,” in <i>ECS Transactions</i>, Cancun, Mexico, 2006, vol.
    3, no. 1, pp. 963–968.
  ista: Büchi FN, Freunberger SA, Santis M. 2006. What is learned beyond the scale
    of single cells? ECS Transactions. ECS Meeting vol. 3, 963–968.
  mla: Büchi, Felix N., et al. “What Is Learned beyond the Scale of Single Cells?”
    <i>ECS Transactions</i>, vol. 3, no. 1, ECS, 2006, pp. 963–68, doi:<a href="https://doi.org/10.1149/1.2356215">10.1149/1.2356215</a>.
  short: F.N. Büchi, S.A. Freunberger, M. Santis, in:, ECS Transactions, ECS, 2006,
    pp. 963–968.
conference:
  end_date: 2006-11-03
  location: Cancun, Mexico
  name: ECS Meeting
  start_date: 2006-10-29
date_created: 2020-01-15T12:22:44Z
date_published: 2006-11-03T00:00:00Z
date_updated: 2021-01-12T08:13:05Z
day: '03'
doi: 10.1149/1.2356215
extern: '1'
intvolume: '         3'
issue: '1'
language:
- iso: eng
month: '11'
oa_version: None
page: 963-968
publication: ECS Transactions
publication_status: published
publisher: ECS
quality_controlled: '1'
status: public
title: What is learned beyond the scale of single cells?
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2006'
...
---
_id: '7327'
abstract:
- lang: eng
  text: "Propagation of performance changes to adjacent cells in polymer electrolyte
    fuel cell stacks is studied by means of voltage monitoring and local current density
    measurements in peripheral cells of the stack. A technical fuel cell stack has
    been modified by implementing two independent reactant and coolant supplies in
    order to deliberately change the performance of one cell (anomalous cell) and
    study the coupling phenomena to adjacent cells (coupling cells), while keeping
    the working conditions of the later cell-group unaltered.\r\nTwo anomalies are
    studied: (i) air starvation and (ii) thermal anomaly, in a single anomalous cell
    in the stack and their coupling to adjacent cells. The results have shown that
    anomalies inducing considerable changes in the local current density of the anomalous
    cell (such as air starvation) propagate to adjacent cells affecting their performance.
    The propagation of local current density changes takes place via the common bipolar
    plate due to its finite thickness and in-plane conductivity. Consequently, anomalies
    which do not strongly influence the local current density distribution (such as
    a thermal anomaly under the studied working conditions) do not propagate to adjacent
    cells."
article_processing_charge: No
article_type: original
author:
- first_name: Marco
  full_name: Santis, Marco
  last_name: Santis
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Matthias
  full_name: Papra, Matthias
  last_name: Papra
- first_name: Alexander
  full_name: Wokaun, Alexander
  last_name: Wokaun
- first_name: Felix N.
  full_name: Büchi, Felix N.
  last_name: Büchi
citation:
  ama: Santis M, Freunberger SA, Papra M, Wokaun A, Büchi FN. Experimental investigation
    of coupling phenomena in polymer electrolyte fuel cell stacks. <i>Journal of Power
    Sources</i>. 2006;161(2):1076-1083. doi:<a href="https://doi.org/10.1016/j.jpowsour.2006.06.007">10.1016/j.jpowsour.2006.06.007</a>
  apa: Santis, M., Freunberger, S. A., Papra, M., Wokaun, A., &#38; Büchi, F. N. (2006).
    Experimental investigation of coupling phenomena in polymer electrolyte fuel cell
    stacks. <i>Journal of Power Sources</i>. Elsevier. <a href="https://doi.org/10.1016/j.jpowsour.2006.06.007">https://doi.org/10.1016/j.jpowsour.2006.06.007</a>
  chicago: Santis, Marco, Stefan Alexander Freunberger, Matthias Papra, Alexander
    Wokaun, and Felix N. Büchi. “Experimental Investigation of Coupling Phenomena
    in Polymer Electrolyte Fuel Cell Stacks.” <i>Journal of Power Sources</i>. Elsevier,
    2006. <a href="https://doi.org/10.1016/j.jpowsour.2006.06.007">https://doi.org/10.1016/j.jpowsour.2006.06.007</a>.
  ieee: M. Santis, S. A. Freunberger, M. Papra, A. Wokaun, and F. N. Büchi, “Experimental
    investigation of coupling phenomena in polymer electrolyte fuel cell stacks,”
    <i>Journal of Power Sources</i>, vol. 161, no. 2. Elsevier, pp. 1076–1083, 2006.
  ista: Santis M, Freunberger SA, Papra M, Wokaun A, Büchi FN. 2006. Experimental
    investigation of coupling phenomena in polymer electrolyte fuel cell stacks. Journal
    of Power Sources. 161(2), 1076–1083.
  mla: Santis, Marco, et al. “Experimental Investigation of Coupling Phenomena in
    Polymer Electrolyte Fuel Cell Stacks.” <i>Journal of Power Sources</i>, vol. 161,
    no. 2, Elsevier, 2006, pp. 1076–83, doi:<a href="https://doi.org/10.1016/j.jpowsour.2006.06.007">10.1016/j.jpowsour.2006.06.007</a>.
  short: M. Santis, S.A. Freunberger, M. Papra, A. Wokaun, F.N. Büchi, Journal of
    Power Sources 161 (2006) 1076–1083.
date_created: 2020-01-15T12:22:56Z
date_published: 2006-10-27T00:00:00Z
date_updated: 2021-01-12T08:13:06Z
day: '27'
doi: 10.1016/j.jpowsour.2006.06.007
extern: '1'
intvolume: '       161'
issue: '2'
language:
- iso: eng
month: '10'
oa_version: None
page: 1076-1083
publication: Journal of Power Sources
publication_identifier:
  issn:
  - 0378-7753
publication_status: published
publisher: Elsevier
status: public
title: Experimental investigation of coupling phenomena in polymer electrolyte fuel
  cell stacks
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 161
year: '2006'
...
---
_id: '7328'
abstract:
- lang: eng
  text: An experimental technique for measuring the current density distribution with
    a resolution smaller than the channel/rib scale of the flow field in polymer electrolyte
    fuel cells (PEFCs) is presented. The electron conductors in a plane perpendicular
    to the channel direction are considered as two-dimensional resistors. Hence, the
    current density is obtained from the solution of Laplace's equation with the potentials
    at current collector and reaction layer as boundary conditions. Using ohmic drop
    for calculating the local current, detailed knowledge of all resistances involved
    is of prime importance. In particular, the contact resistance between the gas
    diffusion layer (GDL) and flow field rib, as well as GDL bulk conductivity, are
    strongly dependent on clamping pressure. They represent a substantial amount of
    the total ohmic drop and therefore require careful consideration. The detailed
    experimental setup as well as the concise procedure for quantitative data evaluation
    is described. Finally, the method is applied successfully to a cell operated on
    pure oxygen and air up to high current densities. The results show that electrical
    and ionic resistances seem to govern the current distribution at low current regimes,
    whereas mass transport limitations locally hamper the current production at high
    loads.
article_number: A2158
article_processing_charge: No
article_type: original
author:
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Mathias
  full_name: Reum, Mathias
  last_name: Reum
- first_name: Jörg
  full_name: Evertz, Jörg
  last_name: Evertz
- first_name: Alexander
  full_name: Wokaun, Alexander
  last_name: Wokaun
- first_name: Felix N.
  full_name: Büchi, Felix N.
  last_name: Büchi
citation:
  ama: Freunberger SA, Reum M, Evertz J, Wokaun A, Büchi FN. Measuring the current
    distribution in PEFCs with sub-millimeter resolution. <i>Journal of The Electrochemical
    Society</i>. 2006;153(11). doi:<a href="https://doi.org/10.1149/1.2345591">10.1149/1.2345591</a>
  apa: Freunberger, S. A., Reum, M., Evertz, J., Wokaun, A., &#38; Büchi, F. N. (2006).
    Measuring the current distribution in PEFCs with sub-millimeter resolution. <i>Journal
    of The Electrochemical Society</i>. The Electrochemical Society. <a href="https://doi.org/10.1149/1.2345591">https://doi.org/10.1149/1.2345591</a>
  chicago: Freunberger, Stefan Alexander, Mathias Reum, Jörg Evertz, Alexander Wokaun,
    and Felix N. Büchi. “Measuring the Current Distribution in PEFCs with Sub-Millimeter
    Resolution.” <i>Journal of The Electrochemical Society</i>. The Electrochemical
    Society, 2006. <a href="https://doi.org/10.1149/1.2345591">https://doi.org/10.1149/1.2345591</a>.
  ieee: S. A. Freunberger, M. Reum, J. Evertz, A. Wokaun, and F. N. Büchi, “Measuring
    the current distribution in PEFCs with sub-millimeter resolution,” <i>Journal
    of The Electrochemical Society</i>, vol. 153, no. 11. The Electrochemical Society,
    2006.
  ista: Freunberger SA, Reum M, Evertz J, Wokaun A, Büchi FN. 2006. Measuring the
    current distribution in PEFCs with sub-millimeter resolution. Journal of The Electrochemical
    Society. 153(11), A2158.
  mla: Freunberger, Stefan Alexander, et al. “Measuring the Current Distribution in
    PEFCs with Sub-Millimeter Resolution.” <i>Journal of The Electrochemical Society</i>,
    vol. 153, no. 11, A2158, The Electrochemical Society, 2006, doi:<a href="https://doi.org/10.1149/1.2345591">10.1149/1.2345591</a>.
  short: S.A. Freunberger, M. Reum, J. Evertz, A. Wokaun, F.N. Büchi, Journal of
    The Electrochemical Society 153 (2006).
date_created: 2020-01-15T12:23:12Z
date_published: 2006-09-20T00:00:00Z
date_updated: 2021-01-12T08:13:06Z
day: '20'
doi: 10.1149/1.2345591
extern: '1'
intvolume: '       153'
issue: '11'
language:
- iso: eng
month: '09'
oa_version: None
publication: Journal of The Electrochemical Society
publication_identifier:
  issn:
  - 0013-4651
publication_status: published
publisher: The Electrochemical Society
quality_controlled: '1'
status: public
title: Measuring the current distribution in PEFCs with sub-millimeter resolution
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 153
year: '2006'
...
---
_id: '7329'
abstract:
- lang: eng
  text: A novel measurement principle for measuring the current distribution in polymer
    electrolyte fuel cells (PEFCs) is introduced. It allows, in contrast to all other
    known techniques, for the first time for a resolution smaller than the channel/rib
    scale of the flow field in PEFCs. The current density is obtained by considering
    the electron conductors in the cell as a two-dimensional resistor with the voltage
    drop caused by the current. The method was applied to a cell operated on oxygen
    up to high current densities. The results show that the ohmic resistances govern
    the current distribution in the low current regime, whereas mass transport limitations
    hamper the current production under the land at high loads.
article_processing_charge: No
article_type: original
author:
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Mathias
  full_name: Reum, Mathias
  last_name: Reum
- first_name: Alexander
  full_name: Wokaun, Alexander
  last_name: Wokaun
- first_name: Felix N.
  full_name: Büchi, Felix N.
  last_name: Büchi
citation:
  ama: Freunberger SA, Reum M, Wokaun A, Büchi FN. Expanding current distribution
    measurement in PEFCs to sub-millimeter resolution. <i>Electrochemistry Communications</i>.
    2006;8(9):1435-1438. doi:<a href="https://doi.org/10.1016/j.elecom.2006.05.032">10.1016/j.elecom.2006.05.032</a>
  apa: Freunberger, S. A., Reum, M., Wokaun, A., &#38; Büchi, F. N. (2006). Expanding
    current distribution measurement in PEFCs to sub-millimeter resolution. <i>Electrochemistry
    Communications</i>. Elsevier. <a href="https://doi.org/10.1016/j.elecom.2006.05.032">https://doi.org/10.1016/j.elecom.2006.05.032</a>
  chicago: Freunberger, Stefan Alexander, Mathias Reum, Alexander Wokaun, and Felix
    N. Büchi. “Expanding Current Distribution Measurement in PEFCs to Sub-Millimeter
    Resolution.” <i>Electrochemistry Communications</i>. Elsevier, 2006. <a href="https://doi.org/10.1016/j.elecom.2006.05.032">https://doi.org/10.1016/j.elecom.2006.05.032</a>.
  ieee: S. A. Freunberger, M. Reum, A. Wokaun, and F. N. Büchi, “Expanding current
    distribution measurement in PEFCs to sub-millimeter resolution,” <i>Electrochemistry
    Communications</i>, vol. 8, no. 9. Elsevier, pp. 1435–1438, 2006.
  ista: Freunberger SA, Reum M, Wokaun A, Büchi FN. 2006. Expanding current distribution
    measurement in PEFCs to sub-millimeter resolution. Electrochemistry Communications.
    8(9), 1435–1438.
  mla: Freunberger, Stefan Alexander, et al. “Expanding Current Distribution Measurement
    in PEFCs to Sub-Millimeter Resolution.” <i>Electrochemistry Communications</i>,
    vol. 8, no. 9, Elsevier, 2006, pp. 1435–38, doi:<a href="https://doi.org/10.1016/j.elecom.2006.05.032">10.1016/j.elecom.2006.05.032</a>.
  short: S.A. Freunberger, M. Reum, A. Wokaun, F.N. Büchi, Electrochemistry Communications
    8 (2006) 1435–1438.
date_created: 2020-01-15T12:23:22Z
date_published: 2006-09-01T00:00:00Z
date_updated: 2021-01-12T08:13:06Z
day: '01'
doi: 10.1016/j.elecom.2006.05.032
extern: '1'
intvolume: '         8'
issue: '9'
language:
- iso: eng
month: '09'
oa_version: None
page: 1435-1438
publication: Electrochemistry Communications
publication_identifier:
  issn:
  - 1388-2481
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Expanding current distribution measurement in PEFCs to sub-millimeter resolution
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2006'
...
