---
_id: '17781'
abstract:
- lang: eng
text: We have discovered an extended Lyα plume (UDF 5225) associated with a compact
source at redshift z ≈ 5.4 in slitless spectroscopic data from the Grism ACS Program
for Extragalactic Science (GRAPES) project. The spatial extent of the emission
is about 6 × 1.5 kpc (1'' × 0farcs25). Combining our grism data and the broadband
images from the Hubble Ultra Deep Field (UDF) images, we find a Lyα line flux
of ~2.2 × 10^-17 ergs cm^-2 s^-1 and surface brightness ~7 × 10^-17ergs cm^-2
s-1 arcsec^-2. The UDF images show diffuse continuum emission associated with
UDF 5225, including three embedded knots. The morphology of UDF 5225 is highly
suggestive of a galaxy in assembly. It is possible that the prominent Lyα emission
from this object is due to an active nucleus, and that we are seeing the simultaneous
growth through accretion of a galaxy and its central black hole. Follow-up observations
at higher spectral resolution could test this hypothesis.
article_processing_charge: No
article_type: original
author:
- first_name: James E.
full_name: Rhoads, James E.
last_name: Rhoads
- first_name: Nino
full_name: Panagia, Nino
last_name: Panagia
- first_name: Rogier A.
full_name: Windhorst, Rogier A.
last_name: Windhorst
- first_name: Sangeeta
full_name: Malhotra, Sangeeta
last_name: Malhotra
- first_name: Norbert
full_name: Pirzkal, Norbert
last_name: Pirzkal
- first_name: Chun
full_name: Xu, Chun
last_name: Xu
- first_name: Louis Gregory
full_name: Strolger, Louis Gregory
last_name: Strolger
- first_name: Louis E.
full_name: Bergeron, Louis E.
last_name: Bergeron
- first_name: Emanuele
full_name: Daddi, Emanuele
last_name: Daddi
- first_name: Harry
full_name: Ferguson, Harry
last_name: Ferguson
- first_name: Jonathan P.
full_name: Gardner, Jonathan P.
last_name: Gardner
- first_name: Caryl
full_name: Gronwall, Caryl
last_name: Gronwall
- first_name: Zoltán
full_name: Haiman, Zoltán
id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
last_name: Haiman
- first_name: Anton
full_name: Koekemoer, Anton
last_name: Koekemoer
- first_name: Martin
full_name: Kummel, Martin
last_name: Kummel
- first_name: Leonidas A.
full_name: Moustakas, Leonidas A.
last_name: Moustakas
- first_name: Anna
full_name: Pasquali, Anna
last_name: Pasquali
- first_name: Adam
full_name: Riess, Adam
last_name: Riess
- first_name: Sperello
full_name: di Serego Alighieri, Sperello
last_name: di Serego Alighieri
- first_name: Massimo
full_name: Stiavelli, Massimo
last_name: Stiavelli
- first_name: Zlatan
full_name: Tsvetanov, Zlatan
last_name: Tsvetanov
- first_name: Joel
full_name: Vernet, Joel
last_name: Vernet
- first_name: Jeremy
full_name: Walsh, Jeremy
last_name: Walsh
- first_name: Haojing
full_name: Yan, Haojing
last_name: Yan
citation:
ama: Rhoads JE, Panagia N, Windhorst RA, et al. A redshift z≈ 5.4 Lyα emitting galaxy
with linear morphology in the GRAPES/Hubble Ultra Deep Field. The Astrophysical
Journal. 2005;621(2):582-586. doi:10.1086/427622
apa: Rhoads, J. E., Panagia, N., Windhorst, R. A., Malhotra, S., Pirzkal, N., Xu,
C., … Yan, H. (2005). A redshift z≈ 5.4 Lyα emitting galaxy with linear morphology
in the GRAPES/Hubble Ultra Deep Field. The Astrophysical Journal. American
Astronomical Society. https://doi.org/10.1086/427622
chicago: Rhoads, James E., Nino Panagia, Rogier A. Windhorst, Sangeeta Malhotra,
Norbert Pirzkal, Chun Xu, Louis Gregory Strolger, et al. “A Redshift Z≈ 5.4 Lyα
Emitting Galaxy with Linear Morphology in the GRAPES/Hubble Ultra Deep Field.”
The Astrophysical Journal. American Astronomical Society, 2005. https://doi.org/10.1086/427622.
ieee: J. E. Rhoads et al., “A redshift z≈ 5.4 Lyα emitting galaxy with linear
morphology in the GRAPES/Hubble Ultra Deep Field,” The Astrophysical Journal,
vol. 621, no. 2. American Astronomical Society, pp. 582–586, 2005.
ista: Rhoads JE, Panagia N, Windhorst RA, Malhotra S, Pirzkal N, Xu C, Strolger
LG, Bergeron LE, Daddi E, Ferguson H, Gardner JP, Gronwall C, Haiman Z, Koekemoer
A, Kummel M, Moustakas LA, Pasquali A, Riess A, di Serego Alighieri S, Stiavelli
M, Tsvetanov Z, Vernet J, Walsh J, Yan H. 2005. A redshift z≈ 5.4 Lyα emitting
galaxy with linear morphology in the GRAPES/Hubble Ultra Deep Field. The Astrophysical
Journal. 621(2), 582–586.
mla: Rhoads, James E., et al. “A Redshift Z≈ 5.4 Lyα Emitting Galaxy with Linear
Morphology in the GRAPES/Hubble Ultra Deep Field.” The Astrophysical Journal,
vol. 621, no. 2, American Astronomical Society, 2005, pp. 582–86, doi:10.1086/427622.
short: J.E. Rhoads, N. Panagia, R.A. Windhorst, S. Malhotra, N. Pirzkal, C. Xu,
L.G. Strolger, L.E. Bergeron, E. Daddi, H. Ferguson, J.P. Gardner, C. Gronwall,
Z. Haiman, A. Koekemoer, M. Kummel, L.A. Moustakas, A. Pasquali, A. Riess, S.
di Serego Alighieri, M. Stiavelli, Z. Tsvetanov, J. Vernet, J. Walsh, H. Yan,
The Astrophysical Journal 621 (2005) 582–586.
date_created: 2024-09-06T10:15:40Z
date_published: 2005-05-10T00:00:00Z
date_updated: 2024-09-30T12:17:32Z
day: '10'
doi: 10.1086/427622
extern: '1'
intvolume: ' 621'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1086/427622
month: '05'
oa: 1
oa_version: Published Version
page: 582-586
publication: The Astrophysical Journal
publication_identifier:
issn:
- 0004-637X
- 1538-4357
publication_status: published
publisher: American Astronomical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: A redshift z≈ 5.4 Lyα emitting galaxy with linear morphology in the GRAPES/Hubble
Ultra Deep Field
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 621
year: '2005'
...
---
_id: '17786'
abstract:
- lang: eng
text: "The first stars and black holes that formed in the Universe are likely too
faint for a direct detection. However, by ionizing most of the intergalactic medium
(IGM), they left an indirect clue that reveals their existence. We discuss currently
available observational constraints on the reionization history of IGM, and the
extent to which accreting black holes (BHs) and stars can help account for these
observations. We argue, based on the combined statistics of Lyman α and β absorption
in quasar spectra, that the IGM contains a significant amount of neutral hydrogen
with nHI/nH ≳0.1. On the other hand, we argue, based on the lack of a strong evolution
in the observed abundance of Lyman α emitting galaxies beyond z ∼5.5, that the
mean neutral hydrogen fraction cannot exceed nHI/nH ≈0.3 at the same redshift.
We conclude that the IGM is experiencing rapid ionization at redshift z ∼6.\r\nWe
find that quasar BHs, including faint ones that are individually below the detection
thresholds of existing optical and X-ray surveys, are unlikely to drive the evolution
of the neutral fraction around this epoch, because they would over-produce the
present-day soft X-ray background. On the other hand, the seeds of the z ∼6 quasar
BHs likely appeared at much earlier epochs (z ∼20), and produced hard ionizing
radiation by accretion. These early BHs are promising candidates to account for
the high redshift (z ∼15) ionization implied by the recent cosmic microwave anisotropy
data from WMAP.\r\nUsing a model for the growth of BHs by accretion and mergers
in a hierarchical cosmology, we suggest that the early growth of quasars must
include a super-Eddington growth phase, and that, although not yet optically identified,
the FIRST radio survey may have already detected several thousand > 10^8 M⊙ BHs
at z > 6."
article_processing_charge: No
article_type: original
author:
- first_name: Zoltán
full_name: Haiman, Zoltán
id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
last_name: Haiman
citation:
ama: Haiman Z. Finding the first generation of stars and black holes. Progress
of Theoretical Physics Supplement. 2005;158:86-104. doi:10.1143/ptps.158.86
apa: Haiman, Z. (2005). Finding the first generation of stars and black holes. Progress
of Theoretical Physics Supplement. Oxford University Press. https://doi.org/10.1143/ptps.158.86
chicago: Haiman, Zoltán. “Finding the First Generation of Stars and Black Holes.”
Progress of Theoretical Physics Supplement. Oxford University Press, 2005.
https://doi.org/10.1143/ptps.158.86.
ieee: Z. Haiman, “Finding the first generation of stars and black holes,” Progress
of Theoretical Physics Supplement, vol. 158. Oxford University Press, pp.
86–104, 2005.
ista: Haiman Z. 2005. Finding the first generation of stars and black holes. Progress
of Theoretical Physics Supplement. 158, 86–104.
mla: Haiman, Zoltán. “Finding the First Generation of Stars and Black Holes.” Progress
of Theoretical Physics Supplement, vol. 158, Oxford University Press, 2005,
pp. 86–104, doi:10.1143/ptps.158.86.
short: Z. Haiman, Progress of Theoretical Physics Supplement 158 (2005) 86–104.
date_created: 2024-09-06T10:19:04Z
date_published: 2005-02-01T00:00:00Z
date_updated: 2024-09-30T13:00:29Z
day: '01'
doi: 10.1143/ptps.158.86
extern: '1'
intvolume: ' 158'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1143/PTPS.158.86
month: '02'
oa: 1
oa_version: Published Version
page: 86-104
publication: Progress of Theoretical Physics Supplement
publication_identifier:
issn:
- 0375-9687
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Finding the first generation of stars and black holes
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 158
year: '2005'
...
---
_id: '8028'
abstract:
- lang: eng
text: 'Transmission of signals within the brain is essential for cognitive function,
but it is not clear how neural circuits support reliable and accurate signal propagation
over a sufficiently large dynamic range. Two modes of propagation have been studied:
synfire chains, in which synchronous activity travels through feedforward layers
of a neuronal network, and the propagation of fluctuations in firing rate across
these layers. In both cases, a sufficient amount of noise, which was added to
previous models from an external source, had to be included to support stable
propagation. Sparse, randomly connected networks of spiking model neurons can
generate chaotic patterns of activity. We investigate whether this activity, which
is a more realistic noise source, is sufficient to allow for signal transmission.
We find that, for rate-coded signals but not for synfire chains, such networks
support robust and accurate signal reproduction through up to six layers if appropriate
adjustments are made in synaptic strengths. We investigate the factors affecting
transmission and show that multiple signals can propagate simultaneously along
different pathways. Using this feature, we show how different types of logic gates
can arise within the architecture of the random network through the strengthening
of specific synapses.'
article_processing_charge: No
article_type: original
author:
- first_name: Tim P
full_name: Vogels, Tim P
id: CB6FF8D2-008F-11EA-8E08-2637E6697425
last_name: Vogels
orcid: 0000-0003-3295-6181
- first_name: L. F.
full_name: Abbott, L. F.
last_name: Abbott
citation:
ama: Vogels TP, Abbott LF. Signal propagation and logic gating in networks of integrate-and-fire
neurons. Journal of Neuroscience. 2005;25(46):10786-10795. doi:10.1523/jneurosci.3508-05.2005
apa: Vogels, T. P., & Abbott, L. F. (2005). Signal propagation and logic gating
in networks of integrate-and-fire neurons. Journal of Neuroscience. Society
for Neuroscience. https://doi.org/10.1523/jneurosci.3508-05.2005
chicago: Vogels, Tim P, and L. F. Abbott. “Signal Propagation and Logic Gating in
Networks of Integrate-and-Fire Neurons.” Journal of Neuroscience. Society
for Neuroscience, 2005. https://doi.org/10.1523/jneurosci.3508-05.2005.
ieee: T. P. Vogels and L. F. Abbott, “Signal propagation and logic gating in networks
of integrate-and-fire neurons,” Journal of Neuroscience, vol. 25, no. 46.
Society for Neuroscience, pp. 10786–10795, 2005.
ista: Vogels TP, Abbott LF. 2005. Signal propagation and logic gating in networks
of integrate-and-fire neurons. Journal of Neuroscience. 25(46), 10786–10795.
mla: Vogels, Tim P., and L. F. Abbott. “Signal Propagation and Logic Gating in Networks
of Integrate-and-Fire Neurons.” Journal of Neuroscience, vol. 25, no. 46,
Society for Neuroscience, 2005, pp. 10786–95, doi:10.1523/jneurosci.3508-05.2005.
short: T.P. Vogels, L.F. Abbott, Journal of Neuroscience 25 (2005) 10786–10795.
date_created: 2020-06-25T13:12:33Z
date_published: 2005-11-16T00:00:00Z
date_updated: 2021-01-12T08:16:37Z
day: '16'
doi: 10.1523/jneurosci.3508-05.2005
extern: '1'
external_id:
pmid:
- '16291952'
intvolume: ' 25'
issue: '46'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6725859/
month: '11'
oa: 1
oa_version: Published Version
page: 10786-10795
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
issn:
- 0270-6474
- 1529-2401
publication_status: published
publisher: Society for Neuroscience
quality_controlled: '1'
status: public
title: Signal propagation and logic gating in networks of integrate-and-fire neurons
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 25
year: '2005'
...
---
_id: '8029'
abstract:
- lang: eng
text: 'Neural network modeling is often concerned with stimulus-driven responses,
but most of the activity in the brain is internally generated. Here, we review
network models of internally generated activity, focusing on three types of network
dynamics: (a) sustained responses to transient stimuli, which provide a model
of working memory; (b) oscillatory network activity; and (c) chaotic activity,
which models complex patterns of background spiking in cortical and other circuits.
We also review propagation of stimulus-driven activity through spontaneously active
networks. Exploring these aspects of neural network dynamics is critical for understanding
how neural circuits produce cognitive function.'
article_processing_charge: No
article_type: review
author:
- first_name: Tim P
full_name: Vogels, Tim P
id: CB6FF8D2-008F-11EA-8E08-2637E6697425
last_name: Vogels
orcid: 0000-0003-3295-6181
- first_name: Kanaka
full_name: Rajan, Kanaka
last_name: Rajan
- first_name: L.F.
full_name: Abbott, L.F.
last_name: Abbott
citation:
ama: Vogels TP, Rajan K, Abbott LF. Neural network dynamics. Annual Review of
Neuroscience. 2005;28(1):357-376. doi:10.1146/annurev.neuro.28.061604.135637
apa: Vogels, T. P., Rajan, K., & Abbott, L. F. (2005). Neural network dynamics.
Annual Review of Neuroscience. Annual Reviews. https://doi.org/10.1146/annurev.neuro.28.061604.135637
chicago: Vogels, Tim P, Kanaka Rajan, and L.F. Abbott. “Neural Network Dynamics.”
Annual Review of Neuroscience. Annual Reviews, 2005. https://doi.org/10.1146/annurev.neuro.28.061604.135637.
ieee: T. P. Vogels, K. Rajan, and L. F. Abbott, “Neural network dynamics,” Annual
Review of Neuroscience, vol. 28, no. 1. Annual Reviews, pp. 357–376, 2005.
ista: Vogels TP, Rajan K, Abbott LF. 2005. Neural network dynamics. Annual Review
of Neuroscience. 28(1), 357–376.
mla: Vogels, Tim P., et al. “Neural Network Dynamics.” Annual Review of Neuroscience,
vol. 28, no. 1, Annual Reviews, 2005, pp. 357–76, doi:10.1146/annurev.neuro.28.061604.135637.
short: T.P. Vogels, K. Rajan, L.F. Abbott, Annual Review of Neuroscience 28 (2005)
357–376.
date_created: 2020-06-25T13:13:11Z
date_published: 2005-07-21T00:00:00Z
date_updated: 2021-01-12T08:16:37Z
day: '21'
doi: 10.1146/annurev.neuro.28.061604.135637
extern: '1'
external_id:
pmid:
- '16022600'
intvolume: ' 28'
issue: '1'
language:
- iso: eng
month: '07'
oa_version: None
page: 357-376
pmid: 1
publication: Annual Review of Neuroscience
publication_identifier:
issn:
- 0147-006X
- 1545-4126
publication_status: published
publisher: Annual Reviews
quality_controlled: '1'
status: public
title: Neural network dynamics
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 28
year: '2005'
...
---
_id: '843'
abstract:
- lang: eng
text: The impact of an amino acid replacement on the organism's fitness can vary
from lethal to selectively neutral and even, in rare cases, beneficial. Substantial
data are available on either pathogenic or acceptable replacements. However, the
whole distribution of coefficients of selection against individual replacements
is not known for any organism. To ascertain this distribution for human proteins,
we combined data on pathogenic missense mutations, on human non-synonymous SNPs
and on human-chimpanzee divergence of orthologous proteins. Fractions of amino
acid replacements which reduce fitness by >10-2, 10-2-10-4, 10-4-10-5 and <10-5
are 25, 49, 14 and 12%, respectively. On average, the strength of selection against
a replacement is substantially higher when chemically dissimilar amino acids are
involved, and the Grantham's index of a replacement explains 35% of variance in
the average logarithm of selection coefficients associated with different replacements.
Still, the impact of a replacement depends on its context within the protein more
than on its own nature. Reciprocal replacements are often associated with rather
different selection coefficients, in particular, replacements of non-polar amino
acids with polar ones are typically much more deleterious than replacements in
the opposite direction. However, differences between evolutionary fluxes of reciprocal
replacements are only weakly correlated with the differences between the corresponding
selection coefficients.
author:
- first_name: Lev
full_name: Yampolsky, Lev Y
last_name: Yampolsky
- first_name: Fyodor
full_name: Fyodor Kondrashov
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
- first_name: Alexey
full_name: Kondrashov, Alexey S
last_name: Kondrashov
citation:
ama: Yampolsky L, Kondrashov F, Kondrashov A. Distribution of the strength of selection
against amino acid replacements in human proteins. Human Molecular Genetics.
2005;14(21):3191-3201. doi:10.1093/hmg/ddi350
apa: Yampolsky, L., Kondrashov, F., & Kondrashov, A. (2005). Distribution of
the strength of selection against amino acid replacements in human proteins. Human
Molecular Genetics. Oxford University Press. https://doi.org/10.1093/hmg/ddi350
chicago: Yampolsky, Lev, Fyodor Kondrashov, and Alexey Kondrashov. “Distribution
of the Strength of Selection against Amino Acid Replacements in Human Proteins.”
Human Molecular Genetics. Oxford University Press, 2005. https://doi.org/10.1093/hmg/ddi350.
ieee: L. Yampolsky, F. Kondrashov, and A. Kondrashov, “Distribution of the strength
of selection against amino acid replacements in human proteins,” Human Molecular
Genetics, vol. 14, no. 21. Oxford University Press, pp. 3191–3201, 2005.
ista: Yampolsky L, Kondrashov F, Kondrashov A. 2005. Distribution of the strength
of selection against amino acid replacements in human proteins. Human Molecular
Genetics. 14(21), 3191–3201.
mla: Yampolsky, Lev, et al. “Distribution of the Strength of Selection against Amino
Acid Replacements in Human Proteins.” Human Molecular Genetics, vol. 14,
no. 21, Oxford University Press, 2005, pp. 3191–201, doi:10.1093/hmg/ddi350.
short: L. Yampolsky, F. Kondrashov, A. Kondrashov, Human Molecular Genetics 14 (2005)
3191–3201.
date_created: 2018-12-11T11:48:48Z
date_published: 2005-11-01T00:00:00Z
date_updated: 2021-01-12T08:19:13Z
day: '01'
doi: 10.1093/hmg/ddi350
extern: 1
intvolume: ' 14'
issue: '21'
month: '11'
page: 3191 - 3201
publication: Human Molecular Genetics
publication_status: published
publisher: Oxford University Press
publist_id: '6807'
quality_controlled: 0
status: public
title: Distribution of the strength of selection against amino acid replacements in
human proteins
type: journal_article
volume: 14
year: '2005'
...
---
_id: '8491'
abstract:
- lang: eng
text: Fast multidimensional NMR with a time resolution of a few seconds provides
a new tool for high throughput screening and site-resolved real-time studies of
kinetic molecular processes by NMR. Recently we have demonstrated the feasibility
to record protein 1H–15N correlation spectra in a few seconds of acquisition time
using a new SOFAST-HMQC experiment (Schanda and Brutscher (2005) J. Am. Chem.
Soc. 127, 8014). Here, we investigate in detail the performance of SOFAST-HMQC
to record 1H–15N and 1H−13C correlation spectra of proteins of different size
and at different magnetic field strengths. Compared to standard 1H–15N correlation
experiments SOFAST-HMQC provides a significant gain in sensitivity, especially
for fast repetition rates. Guidelines are provided on how to set up SOFAST-HMQC
experiments for a given protein sample. In addition, an alternative pulse scheme,
IPAP-SOFAST-HMQC is presented that allows application on NMR spectrometers equipped
with cryogenic probes, and fast measurement of one-bond 1H–13C and 1H–15N scalar
and residual dipolar coupling constants.
article_processing_charge: No
article_type: original
author:
- first_name: Paul
full_name: Schanda, Paul
id: 7B541462-FAF6-11E9-A490-E8DFE5697425
last_name: Schanda
orcid: 0000-0002-9350-7606
- first_name: Ēriks
full_name: Kupče, Ēriks
last_name: Kupče
- first_name: Bernhard
full_name: Brutscher, Bernhard
last_name: Brutscher
citation:
ama: Schanda P, Kupče Ē, Brutscher B. SOFAST-HMQC experiments for recording two-dimensional
deteronuclear correlation spectra of proteins within a few seconds. Journal
of Biomolecular NMR. 2005;33(4):199-211. doi:10.1007/s10858-005-4425-x
apa: Schanda, P., Kupče, Ē., & Brutscher, B. (2005). SOFAST-HMQC experiments
for recording two-dimensional deteronuclear correlation spectra of proteins within
a few seconds. Journal of Biomolecular NMR. Springer Nature. https://doi.org/10.1007/s10858-005-4425-x
chicago: Schanda, Paul, Ēriks Kupče, and Bernhard Brutscher. “SOFAST-HMQC Experiments
for Recording Two-Dimensional Deteronuclear Correlation Spectra of Proteins within
a Few Seconds.” Journal of Biomolecular NMR. Springer Nature, 2005. https://doi.org/10.1007/s10858-005-4425-x.
ieee: P. Schanda, Ē. Kupče, and B. Brutscher, “SOFAST-HMQC experiments for recording
two-dimensional deteronuclear correlation spectra of proteins within a few seconds,”
Journal of Biomolecular NMR, vol. 33, no. 4. Springer Nature, pp. 199–211,
2005.
ista: Schanda P, Kupče Ē, Brutscher B. 2005. SOFAST-HMQC experiments for recording
two-dimensional deteronuclear correlation spectra of proteins within a few seconds.
Journal of Biomolecular NMR. 33(4), 199–211.
mla: Schanda, Paul, et al. “SOFAST-HMQC Experiments for Recording Two-Dimensional
Deteronuclear Correlation Spectra of Proteins within a Few Seconds.” Journal
of Biomolecular NMR, vol. 33, no. 4, Springer Nature, 2005, pp. 199–211, doi:10.1007/s10858-005-4425-x.
short: P. Schanda, Ē. Kupče, B. Brutscher, Journal of Biomolecular NMR 33 (2005)
199–211.
date_created: 2020-09-18T10:13:59Z
date_published: 2005-12-01T00:00:00Z
date_updated: 2021-01-12T08:19:38Z
day: '01'
doi: 10.1007/s10858-005-4425-x
extern: '1'
intvolume: ' 33'
issue: '4'
keyword:
- Spectroscopy
- Biochemistry
language:
- iso: eng
month: '12'
oa_version: None
page: 199-211
publication: Journal of Biomolecular NMR
publication_identifier:
issn:
- 0925-2738
- 1573-5001
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: SOFAST-HMQC experiments for recording two-dimensional deteronuclear correlation
spectra of proteins within a few seconds
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2005'
...
---
_id: '8492'
abstract:
- lang: eng
text: We demonstrate for different protein samples that 2D 1H−15N correlation NMR
spectra can be recorded in a few seconds of acquisition time using a new band-selective
optimized flip-angle short-transient heteronuclear multiple quantum coherence
experiment. This has enabled us to measure fast hydrogen−deuterium exchange rate
constants along the backbone of a small globular protein fragment by real-time
2D NMR.
article_processing_charge: No
article_type: original
author:
- first_name: Paul
full_name: Schanda, Paul
id: 7B541462-FAF6-11E9-A490-E8DFE5697425
last_name: Schanda
orcid: 0000-0002-9350-7606
- first_name: Bernhard
full_name: Brutscher, Bernhard
last_name: Brutscher
citation:
ama: Schanda P, Brutscher B. Very fast two-dimensional NMR spectroscopy for real-time
investigation of dynamic events in proteins on the time scale of seconds. Journal
of the American Chemical Society. 2005;127(22):8014-8015. doi:10.1021/ja051306e
apa: Schanda, P., & Brutscher, B. (2005). Very fast two-dimensional NMR spectroscopy
for real-time investigation of dynamic events in proteins on the time scale of
seconds. Journal of the American Chemical Society. American Chemical Society.
https://doi.org/10.1021/ja051306e
chicago: Schanda, Paul, and Bernhard Brutscher. “Very Fast Two-Dimensional NMR Spectroscopy
for Real-Time Investigation of Dynamic Events in Proteins on the Time Scale of
Seconds.” Journal of the American Chemical Society. American Chemical Society,
2005. https://doi.org/10.1021/ja051306e.
ieee: P. Schanda and B. Brutscher, “Very fast two-dimensional NMR spectroscopy for
real-time investigation of dynamic events in proteins on the time scale of seconds,”
Journal of the American Chemical Society, vol. 127, no. 22. American Chemical
Society, pp. 8014–8015, 2005.
ista: Schanda P, Brutscher B. 2005. Very fast two-dimensional NMR spectroscopy for
real-time investigation of dynamic events in proteins on the time scale of seconds.
Journal of the American Chemical Society. 127(22), 8014–8015.
mla: Schanda, Paul, and Bernhard Brutscher. “Very Fast Two-Dimensional NMR Spectroscopy
for Real-Time Investigation of Dynamic Events in Proteins on the Time Scale of
Seconds.” Journal of the American Chemical Society, vol. 127, no. 22, American
Chemical Society, 2005, pp. 8014–15, doi:10.1021/ja051306e.
short: P. Schanda, B. Brutscher, Journal of the American Chemical Society 127 (2005)
8014–8015.
date_created: 2020-09-18T10:14:05Z
date_published: 2005-05-14T00:00:00Z
date_updated: 2021-01-12T08:19:39Z
day: '14'
doi: 10.1021/ja051306e
extern: '1'
intvolume: ' 127'
issue: '22'
keyword:
- Colloid and Surface Chemistry
- Biochemistry
- General Chemistry
- Catalysis
language:
- iso: eng
month: '05'
oa_version: None
page: 8014-8015
publication: Journal of the American Chemical Society
publication_identifier:
issn:
- 0002-7863
- 1520-5126
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
status: public
title: Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic
events in proteins on the time scale of seconds
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 127
year: '2005'
...
---
_id: '8516'
abstract:
- lang: eng
text: "The purpose of this paper is to construct examples of diffusion for E-Hamiltonian
perturbations\r\nof completely integrable Hamiltonian systems in 2d-dimensional
phase space, with d large.\r\nIn the first part of the paper, simple and explicit
examples are constructed illustrating absence\r\nof ‘long-time’ stability for
size E Hamiltonian perturbations of quasi-convex integrable systems\r\nalready
when the dimension 2d of phase space becomes as large as log 1/E . We first produce\r\nthe
example in Gevrey class and then a real analytic one, with some additional work.\r\nIn
the second part, we consider again E-Hamiltonian perturbations of completely integrable\r\nHamiltonian
system in 2d-dimensional space with E-small but not too small, |E| > exp(−d),
with\r\nd the number of degrees of freedom assumed large. It is shown that for
a class of analytic\r\ntime-periodic perturbations, there exist linearly diffusing
trajectories. The underlying idea for\r\nboth examples is similar and consists
in coupling a fixed degree of freedom with a large\r\nnumber of them. The procedure
and analytical details are however significantly different. As\r\nmentioned, the
construction in Part I is totally elementary while Part II is more involved, relying\r\nin
particular on the theory of normally hyperbolic invariant manifolds, methods of
generating\r\nfunctions, Aubry–Mather theory, and Mather’s variational methods."
article_processing_charge: No
article_type: original
author:
- first_name: Jean
full_name: Bourgain, Jean
last_name: Bourgain
- first_name: Vadim
full_name: Kaloshin, Vadim
id: FE553552-CDE8-11E9-B324-C0EBE5697425
last_name: Kaloshin
orcid: 0000-0002-6051-2628
citation:
ama: Bourgain J, Kaloshin V. On diffusion in high-dimensional Hamiltonian systems.
Journal of Functional Analysis. 2005;229(1):1-61. doi:10.1016/j.jfa.2004.09.006
apa: Bourgain, J., & Kaloshin, V. (2005). On diffusion in high-dimensional Hamiltonian
systems. Journal of Functional Analysis. Elsevier. https://doi.org/10.1016/j.jfa.2004.09.006
chicago: Bourgain, Jean, and Vadim Kaloshin. “On Diffusion in High-Dimensional Hamiltonian
Systems.” Journal of Functional Analysis. Elsevier, 2005. https://doi.org/10.1016/j.jfa.2004.09.006.
ieee: J. Bourgain and V. Kaloshin, “On diffusion in high-dimensional Hamiltonian
systems,” Journal of Functional Analysis, vol. 229, no. 1. Elsevier, pp.
1–61, 2005.
ista: Bourgain J, Kaloshin V. 2005. On diffusion in high-dimensional Hamiltonian
systems. Journal of Functional Analysis. 229(1), 1–61.
mla: Bourgain, Jean, and Vadim Kaloshin. “On Diffusion in High-Dimensional Hamiltonian
Systems.” Journal of Functional Analysis, vol. 229, no. 1, Elsevier, 2005,
pp. 1–61, doi:10.1016/j.jfa.2004.09.006.
short: J. Bourgain, V. Kaloshin, Journal of Functional Analysis 229 (2005) 1–61.
date_created: 2020-09-18T10:49:06Z
date_published: 2005-12-01T00:00:00Z
date_updated: 2021-01-12T08:19:49Z
day: '01'
doi: 10.1016/j.jfa.2004.09.006
extern: '1'
intvolume: ' 229'
issue: '1'
keyword:
- Analysis
language:
- iso: eng
month: '12'
oa_version: None
page: 1-61
publication: Journal of Functional Analysis
publication_identifier:
issn:
- 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: On diffusion in high-dimensional Hamiltonian systems
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 229
year: '2005'
...
---
_id: '877'
abstract:
- lang: eng
text: "Sequence analysis of protein and mitochondrially encoded tRNA genes shows
that substitutions\r\nproducing pathogenic effects in humans are often found in
normal, healthy individuals from other species.\r\nAnalysis of stability of protein
and tRNA structures shows that the disease-causing effects of pathogenic\r\nmutations
can be neutralized by other, compensatory substitutions that restore the structural
stability of the\r\nmolecule. Further study of such substitutions will, hopefully,
lead to new methods for curing genetic dis-\r\neases that may be based on the
correction of molecule stability as a whole instead of reversing an individual\r\npathogenic
mutation."
article_processing_charge: No
article_type: original
author:
- first_name: Fyodor
full_name: Kondrashov, Fyodor
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
citation:
ama: Kondrashov F. The analysis of monomer sequences in protein and tRNA and the
manifestation of the compensation of pathogenic deviations in their evolution.
Biofizika. 2005;50(3):389-395.
apa: Kondrashov, F. (2005). The analysis of monomer sequences in protein and tRNA
and the manifestation of the compensation of pathogenic deviations in their evolution.
Biofizika. Pleiades Publishing.
chicago: Kondrashov, Fyodor. “The Analysis of Monomer Sequences in Protein and TRNA
and the Manifestation of the Compensation of Pathogenic Deviations in Their Evolution.”
Biofizika. Pleiades Publishing, 2005.
ieee: F. Kondrashov, “The analysis of monomer sequences in protein and tRNA and
the manifestation of the compensation of pathogenic deviations in their evolution,”
Biofizika, vol. 50, no. 3. Pleiades Publishing, pp. 389–395, 2005.
ista: Kondrashov F. 2005. The analysis of monomer sequences in protein and tRNA
and the manifestation of the compensation of pathogenic deviations in their evolution.
Biofizika. 50(3), 389–395.
mla: Kondrashov, Fyodor. “The Analysis of Monomer Sequences in Protein and TRNA
and the Manifestation of the Compensation of Pathogenic Deviations in Their Evolution.”
Biofizika, vol. 50, no. 3, Pleiades Publishing, 2005, pp. 389–95.
short: F. Kondrashov, Biofizika 50 (2005) 389–395.
date_created: 2018-12-11T11:48:58Z
date_published: 2005-05-01T00:00:00Z
date_updated: 2021-01-12T08:21:01Z
day: '01'
extern: '1'
external_id:
pmid:
- '15977826'
intvolume: ' 50'
issue: '3'
language:
- iso: eng
main_file_link:
- url: http://pleiades.online/abstract/biophys/5/biophys0349_abstract.pdf
month: '05'
oa_version: None
page: 389 - 395
pmid: 1
publication: Biofizika
publication_status: published
publisher: Pleiades Publishing
publist_id: '6769'
quality_controlled: '1'
status: public
title: The analysis of monomer sequences in protein and tRNA and the manifestation
of the compensation of pathogenic deviations in their evolution
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2005'
...
---
_id: '878'
abstract:
- lang: eng
text: |
Negative trade-offs are thought to be a pervasive phenomenon and to inhibit evolution at all levels. New evidence shows that at the molecular level, there may be no trade-offs preventing the emergence of an enzyme with multiple functions.
author:
- first_name: Fyodor
full_name: Fyodor Kondrashov
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
citation:
ama: Kondrashov F. In search of the limits of evolution. Nature Genetics.
2005;37(1):9-10. doi:10.1038/ng0105-9
apa: Kondrashov, F. (2005). In search of the limits of evolution. Nature Genetics.
Nature Publishing Group. https://doi.org/10.1038/ng0105-9
chicago: Kondrashov, Fyodor. “In Search of the Limits of Evolution.” Nature Genetics.
Nature Publishing Group, 2005. https://doi.org/10.1038/ng0105-9.
ieee: F. Kondrashov, “In search of the limits of evolution,” Nature Genetics,
vol. 37, no. 1. Nature Publishing Group, pp. 9–10, 2005.
ista: Kondrashov F. 2005. In search of the limits of evolution. Nature Genetics.
37(1), 9–10.
mla: Kondrashov, Fyodor. “In Search of the Limits of Evolution.” Nature Genetics,
vol. 37, no. 1, Nature Publishing Group, 2005, pp. 9–10, doi:10.1038/ng0105-9.
short: F. Kondrashov, Nature Genetics 37 (2005) 9–10.
date_created: 2018-12-11T11:48:59Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T08:21:02Z
day: '01'
doi: 10.1038/ng0105-9
extern: 1
intvolume: ' 37'
issue: '1'
month: '01'
page: 9 - 10
publication: Nature Genetics
publication_status: published
publisher: Nature Publishing Group
publist_id: '6770'
quality_controlled: 0
status: public
title: In search of the limits of evolution
type: journal_article
volume: 37
year: '2005'
...
---
_id: '880'
abstract:
- lang: eng
text: Here, I describe a case of loss of the D-arm by mitochondrial cysteine tRNA
in the nine-banded armadillo (Dasypus novemcinctus) convergent with mt tRNASer(AGY).
Such evolution sheds light on the relationship between structure and function
of tRNA molecules and its impact on the patterns of molecular evolution.
article_processing_charge: No
author:
- first_name: Fyodor
full_name: Kondrashov, Fyodor
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
citation:
ama: Kondrashov F. The convergent evolution of the secondary structure of mitochondrial
cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus. Biofizika.
2005;50(3):396-403.
apa: Kondrashov, F. (2005). The convergent evolution of the secondary structure
of mitochondrial cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus.
Biofizika. Pleiades Publishing.
chicago: Kondrashov, Fyodor. “The Convergent Evolution of the Secondary Structure
of Mitochondrial Cysteine TRNA in the Nine-Banded Armadillo Dasypus Novemcinctus.”
Biofizika. Pleiades Publishing, 2005.
ieee: F. Kondrashov, “The convergent evolution of the secondary structure of mitochondrial
cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus,” Biofizika,
vol. 50, no. 3. Pleiades Publishing, pp. 396–403, 2005.
ista: Kondrashov F. 2005. The convergent evolution of the secondary structure of
mitochondrial cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus.
Biofizika. 50(3), 396–403.
mla: Kondrashov, Fyodor. “The Convergent Evolution of the Secondary Structure of
Mitochondrial Cysteine TRNA in the Nine-Banded Armadillo Dasypus Novemcinctus.”
Biofizika, vol. 50, no. 3, Pleiades Publishing, 2005, pp. 396–403.
short: F. Kondrashov, Biofizika 50 (2005) 396–403.
date_created: 2018-12-11T11:48:59Z
date_published: 2005-05-01T00:00:00Z
date_updated: 2021-01-12T08:21:07Z
day: '01'
extern: '1'
external_id:
pmid:
- '15977827'
intvolume: ' 50'
issue: '3'
language:
- iso: eng
main_file_link:
- url: http://pleiades.online/abstract/biophys/5/biophys0356_abstract.pdf
month: '05'
oa_version: None
page: 396 - 403
pmid: 1
publication: Biofizika
publication_status: published
publisher: Pleiades Publishing
publist_id: '6768'
quality_controlled: '1'
status: public
title: The convergent evolution of the secondary structure of mitochondrial cysteine
tRNA in the nine-banded armadillo Dasypus novemcinctus
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2005'
...
---
_id: '882'
abstract:
- lang: eng
text: Some mutations in human mitochondrial tRNAs are severely pathogenic. The available
computational methods have a poor record of predicting the impact of a tRNA mutation
on the phenotype and fitness. Here patterns of evolution at tRNA sites that harbor
pathogenic mutations and at sites that harbor phenotypically cryptic polymorphisms
were compared. Mutations that are pathogenic to humans occupy more conservative
sites, are only rarely fixed in closely related species, and, when located in
stem structures, often disrupt Watson-Crick pairing and display signs of compensatory
evolution. These observations make it possible to classify ∼90% of all known pathogenic
mutations as deleterious together with only ∼30% of polymorphisms. These polymorphisms
segregate at frequencies that are more than two times lower than frequencies of
polymorphisms classified as benign, indicating that at least ∼30% of known polymorphisms
in mitochondrial tRNAs affect fitness negatively.
acknowledgement: |
The author thanks P. Andolfatto, D. Bachtrog, N. Esipova, S. Makeev, A. Kondrashov, V. Ramensky, V. Tumanyan and P. Vlasov for a critical reading of the manuscript. The author is an NSF Graduate Research Fellow. This work was supported by a Contract of the Russian Ministry of Science and Education (02.434.11.1008) and a grant on Molecular and Cellular Biology from RAS.
author:
- first_name: Fyodor
full_name: Fyodor Kondrashov
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
citation:
ama: Kondrashov F. Prediction of pathogenic mutations in mitochondrially encoded
human tRNAs. Human Molecular Genetics. 2005;14(16):2415-2419. doi:10.1093/hmg/ddi243
apa: Kondrashov, F. (2005). Prediction of pathogenic mutations in mitochondrially
encoded human tRNAs. Human Molecular Genetics. Oxford University Press.
https://doi.org/10.1093/hmg/ddi243
chicago: Kondrashov, Fyodor. “Prediction of Pathogenic Mutations in Mitochondrially
Encoded Human TRNAs.” Human Molecular Genetics. Oxford University Press,
2005. https://doi.org/10.1093/hmg/ddi243.
ieee: F. Kondrashov, “Prediction of pathogenic mutations in mitochondrially encoded
human tRNAs,” Human Molecular Genetics, vol. 14, no. 16. Oxford University
Press, pp. 2415–2419, 2005.
ista: Kondrashov F. 2005. Prediction of pathogenic mutations in mitochondrially
encoded human tRNAs. Human Molecular Genetics. 14(16), 2415–2419.
mla: Kondrashov, Fyodor. “Prediction of Pathogenic Mutations in Mitochondrially
Encoded Human TRNAs.” Human Molecular Genetics, vol. 14, no. 16, Oxford
University Press, 2005, pp. 2415–19, doi:10.1093/hmg/ddi243.
short: F. Kondrashov, Human Molecular Genetics 14 (2005) 2415–2419.
date_created: 2018-12-11T11:49:00Z
date_published: 2005-08-15T00:00:00Z
date_updated: 2021-01-12T08:21:10Z
day: '15'
doi: 10.1093/hmg/ddi243
extern: 1
intvolume: ' 14'
issue: '16'
month: '08'
page: 2415 - 2419
publication: Human Molecular Genetics
publication_status: published
publisher: Oxford University Press
publist_id: '6767'
quality_controlled: 0
status: public
title: Prediction of pathogenic mutations in mitochondrially encoded human tRNAs
type: journal_article
volume: 14
year: '2005'
...
---
_id: '893'
abstract:
- lang: eng
text: Amino acid composition of proteins varies substantially between taxa and,
thus, can evolve. For example, proteins from organisms with (G+C)-rich (or (A+T)-rich)
genomes contain more (or fewer) amino acids encoded by (G+C)-rich codons. However,
no universal trends in ongoing changes of amino acid frequencies have been reported.
We compared sets of orthologous proteins encoded by triplets of closely related
genomes from 15 taxa representing all three domains of life (Bacteria, Archaea
and Eukaryota), and used phylogenies to polarize amino acid substitutions. Cys,
Met, His, Ser and Phe accrue in at least 14 taxa, whereas Pro, Ala, Glu and Gly
are consistently lost. The same nine amino acids are currently accrued or lost
in human proteins, as shown by analysis of non-synonymous single-nucleotide polymorphisms.
All amino acids with declining frequencies are thought to be among the first incorporated
into the genetic code; conversely, all amino acids with increasing frequencies,
except Ser, were probably recruited late. Thus, expansion of initially under-represented
amino acids, which began over 3,400 million years ago, apparently continues to
this day.
acknowledgement: S.S. and I.A.A. were supported by the Genome Canada Foundation.
author:
- first_name: Ingo
full_name: Jordan, Ingo K
last_name: Jordan
- first_name: Fyodor
full_name: Fyodor Kondrashov
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
- first_name: Ivan
full_name: Adzhubeǐ, Ivan A
last_name: Adzhubeǐ
- first_name: Yuri
full_name: Wolf, Yuri I
last_name: Wolf
- first_name: Eugene
full_name: Koonin, Eugene V
last_name: Koonin
- first_name: Alexey
full_name: Kondrashov, Alexey S
last_name: Kondrashov
- first_name: Shamil
full_name: Sunyaev, Shamil R
last_name: Sunyaev
citation:
ama: Jordan I, Kondrashov F, Adzhubeǐ I, et al. A universal trend of amino acid
gain and loss in protein evolution. Nature. 2005;433(7026):633-638. doi:10.1038/nature03306
apa: Jordan, I., Kondrashov, F., Adzhubeǐ, I., Wolf, Y., Koonin, E., Kondrashov,
A., & Sunyaev, S. (2005). A universal trend of amino acid gain and loss in
protein evolution. Nature. Nature Publishing Group. https://doi.org/10.1038/nature03306
chicago: Jordan, Ingo, Fyodor Kondrashov, Ivan Adzhubeǐ, Yuri Wolf, Eugene Koonin,
Alexey Kondrashov, and Shamil Sunyaev. “A Universal Trend of Amino Acid Gain and
Loss in Protein Evolution.” Nature. Nature Publishing Group, 2005. https://doi.org/10.1038/nature03306.
ieee: I. Jordan et al., “A universal trend of amino acid gain and loss in
protein evolution,” Nature, vol. 433, no. 7026. Nature Publishing Group,
pp. 633–638, 2005.
ista: Jordan I, Kondrashov F, Adzhubeǐ I, Wolf Y, Koonin E, Kondrashov A, Sunyaev
S. 2005. A universal trend of amino acid gain and loss in protein evolution. Nature.
433(7026), 633–638.
mla: Jordan, Ingo, et al. “A Universal Trend of Amino Acid Gain and Loss in Protein
Evolution.” Nature, vol. 433, no. 7026, Nature Publishing Group, 2005,
pp. 633–38, doi:10.1038/nature03306.
short: I. Jordan, F. Kondrashov, I. Adzhubeǐ, Y. Wolf, E. Koonin, A. Kondrashov,
S. Sunyaev, Nature 433 (2005) 633–638.
date_created: 2018-12-11T11:49:03Z
date_published: 2005-02-10T00:00:00Z
date_updated: 2021-01-12T08:21:23Z
day: '10'
doi: 10.1038/nature03306
extern: 1
intvolume: ' 433'
issue: '7026'
month: '02'
page: 633 - 638
publication: Nature
publication_status: published
publisher: Nature Publishing Group
publist_id: '6757'
quality_controlled: 0
status: public
title: A universal trend of amino acid gain and loss in protein evolution
type: journal_article
volume: 433
year: '2005'
...
---
_id: '9491'
abstract:
- lang: eng
text: Cytosine DNA methylation in vertebrates is widespread, but methylation in
plants is found almost exclusively at transposable elements and repetitive DNA
[1]. Within regions of methylation, methylcytosines are typically found in CG,
CNG, and asymmetric contexts. CG sites are maintained by a plant homolog of mammalian
Dnmt1 acting on hemi-methylated DNA after replication. Methylation of CNG and
asymmetric sites appears to be maintained at each cell cycle by other mechanisms.
We report a new type of DNA methylation in Arabidopsis, dense CG methylation clusters
found at scattered sites throughout the genome. These clusters lack non-CG methylation
and are preferentially found in genes, although they are relatively deficient
toward the 5′ end. CG methylation clusters are present in lines derived from different
accessions and in mutants that eliminate de novo methylation, indicating that
CG methylation clusters are stably maintained at specific sites. Because 5-methylcytosine
is mutagenic, the appearance of CG methylation clusters over evolutionary time
predicts a genome-wide deficiency of CG dinucleotides and an excess of C(A/T)G
trinucleotides within transcribed regions. This is exactly what we find, implying
that CG methylation clusters have contributed profoundly to plant gene evolution.
We suggest that CG methylation clusters silence cryptic promoters that arise sporadically
within transcription units.
article_processing_charge: No
article_type: original
author:
- first_name: Robert K.
full_name: Tran, Robert K.
last_name: Tran
- first_name: Jorja G.
full_name: Henikoff, Jorja G.
last_name: Henikoff
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Renata F.
full_name: Ditt, Renata F.
last_name: Ditt
- first_name: Steven E.
full_name: Jacobsen, Steven E.
last_name: Jacobsen
- first_name: Steven
full_name: Henikoff, Steven
last_name: Henikoff
citation:
ama: Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. DNA methylation
profiling identifies CG methylation clusters in Arabidopsis genes. Current
Biology. 2005;15(2):154-159. doi:10.1016/j.cub.2005.01.008
apa: Tran, R. K., Henikoff, J. G., Zilberman, D., Ditt, R. F., Jacobsen, S. E.,
& Henikoff, S. (2005). DNA methylation profiling identifies CG methylation
clusters in Arabidopsis genes. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2005.01.008
chicago: Tran, Robert K., Jorja G. Henikoff, Daniel Zilberman, Renata F. Ditt, Steven
E. Jacobsen, and Steven Henikoff. “DNA Methylation Profiling Identifies CG Methylation
Clusters in Arabidopsis Genes.” Current Biology. Elsevier, 2005. https://doi.org/10.1016/j.cub.2005.01.008.
ieee: R. K. Tran, J. G. Henikoff, D. Zilberman, R. F. Ditt, S. E. Jacobsen, and
S. Henikoff, “DNA methylation profiling identifies CG methylation clusters in
Arabidopsis genes,” Current Biology, vol. 15, no. 2. Elsevier, pp. 154–159,
2005.
ista: Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. 2005.
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes.
Current Biology. 15(2), 154–159.
mla: Tran, Robert K., et al. “DNA Methylation Profiling Identifies CG Methylation
Clusters in Arabidopsis Genes.” Current Biology, vol. 15, no. 2, Elsevier,
2005, pp. 154–59, doi:10.1016/j.cub.2005.01.008.
short: R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff,
Current Biology 15 (2005) 154–159.
date_created: 2021-06-07T10:24:30Z
date_published: 2005-01-26T00:00:00Z
date_updated: 2021-12-14T09:12:26Z
day: '26'
department:
- _id: DaZi
doi: 10.1016/j.cub.2005.01.008
extern: '1'
external_id:
pmid:
- '15668172 '
intvolume: ' 15'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.cub.2005.01.008
month: '01'
oa: 1
oa_version: Published Version
page: 154-159
pmid: 1
publication: Current Biology
publication_identifier:
eissn:
- 1879-0445
issn:
- 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: DNA methylation profiling identifies CG methylation clusters in Arabidopsis
genes
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 15
year: '2005'
...
---
_id: '9514'
abstract:
- lang: eng
text: "Background:\r\nDNA methylation occurs at preferred sites in eukaryotes. In
Arabidopsis, DNA cytosine methylation is maintained by three subfamilies of methyltransferases
with distinct substrate specificities and different modes of action. Targeting
of cytosine methylation at selected loci has been found to sometimes involve histone
H3 methylation and small interfering (si)RNAs. However, the relationship between
different cytosine methylation pathways and their preferred targets is not known.\r\nResults:\r\nWe
used a microarray-based profiling method to explore the involvement of Arabidopsis
CMT3 and DRM DNA methyltransferases, a histone H3 lysine-9 methyltransferase (KYP)
and an Argonaute-related siRNA silencing component (AGO4) in methylating target
loci. We found that KYP targets are also CMT3 targets, suggesting that histone
methylation maintains CNG methylation genome-wide. CMT3 and KYP targets show similar
proximal distributions that correspond to the overall distribution of transposable
elements of all types, whereas DRM targets are distributed more distally along
the chromosome. We find an inverse relationship between element size and loss
of methylation in ago4 and drm mutants.\r\nConclusion:\r\nWe conclude that the
targets of both DNA methylation and histone H3K9 methylation pathways are transposable
elements genome-wide, irrespective of element type and position. Our findings
also suggest that RNA-directed DNA methylation is required to silence isolated
elements that may be too small to be maintained in a silent state by a chromatin-based
mechanism alone. Thus, parallel pathways would be needed to maintain silencing
of transposable elements."
article_number: R90
article_processing_charge: No
article_type: original
author:
- first_name: Robert K.
full_name: Tran, Robert K.
last_name: Tran
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Cecilia
full_name: de Bustos, Cecilia
last_name: de Bustos
- first_name: Renata F.
full_name: Ditt, Renata F.
last_name: Ditt
- first_name: Jorja G.
full_name: Henikoff, Jorja G.
last_name: Henikoff
- first_name: Anders M.
full_name: Lindroth, Anders M.
last_name: Lindroth
- first_name: Jeffrey
full_name: Delrow, Jeffrey
last_name: Delrow
- first_name: Tom
full_name: Boyle, Tom
last_name: Boyle
- first_name: Samson
full_name: Kwong, Samson
last_name: Kwong
- first_name: Terri D.
full_name: Bryson, Terri D.
last_name: Bryson
- first_name: Steven E.
full_name: Jacobsen, Steven E.
last_name: Jacobsen
- first_name: Steven
full_name: Henikoff, Steven
last_name: Henikoff
citation:
ama: Tran RK, Zilberman D, de Bustos C, et al. Chromatin and siRNA pathways cooperate
to maintain DNA methylation of small transposable elements in Arabidopsis. Genome
Biology. 2005;6(11). doi:10.1186/gb-2005-6-11-r90
apa: Tran, R. K., Zilberman, D., de Bustos, C., Ditt, R. F., Henikoff, J. G., Lindroth,
A. M., … Henikoff, S. (2005). Chromatin and siRNA pathways cooperate to maintain
DNA methylation of small transposable elements in Arabidopsis. Genome Biology.
Springer Nature. https://doi.org/10.1186/gb-2005-6-11-r90
chicago: Tran, Robert K., Daniel Zilberman, Cecilia de Bustos, Renata F. Ditt, Jorja
G. Henikoff, Anders M. Lindroth, Jeffrey Delrow, et al. “Chromatin and SiRNA Pathways
Cooperate to Maintain DNA Methylation of Small Transposable Elements in Arabidopsis.”
Genome Biology. Springer Nature, 2005. https://doi.org/10.1186/gb-2005-6-11-r90.
ieee: R. K. Tran et al., “Chromatin and siRNA pathways cooperate to maintain
DNA methylation of small transposable elements in Arabidopsis,” Genome Biology,
vol. 6, no. 11. Springer Nature, 2005.
ista: Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow
J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. 2005. Chromatin and siRNA
pathways cooperate to maintain DNA methylation of small transposable elements
in Arabidopsis. Genome Biology. 6(11), R90.
mla: Tran, Robert K., et al. “Chromatin and SiRNA Pathways Cooperate to Maintain
DNA Methylation of Small Transposable Elements in Arabidopsis.” Genome Biology,
vol. 6, no. 11, R90, Springer Nature, 2005, doi:10.1186/gb-2005-6-11-r90.
short: R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth,
J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome
Biology 6 (2005).
date_created: 2021-06-07T13:12:41Z
date_published: 2005-10-19T00:00:00Z
date_updated: 2021-12-14T09:09:41Z
day: '19'
department:
- _id: DaZi
doi: 10.1186/gb-2005-6-11-r90
extern: '1'
external_id:
pmid:
- '16277745'
intvolume: ' 6'
issue: '11'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1186/gb-2005-6-11-r90
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: Genome Biology
publication_identifier:
eissn:
- 1465-6906
issn:
- 1474-760X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Chromatin and siRNA pathways cooperate to maintain DNA methylation of small
transposable elements in Arabidopsis
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 6
year: '2005'
...
---
_id: '9529'
abstract:
- lang: eng
text: Eukaryotic organisms have the remarkable ability to inherit states of gene
activity without altering the underlying DNA sequence. This epigenetic inheritance
can persist over thousands of years, providing an alternative to genetic mutations
as a substrate for natural selection. Epigenetic inheritance might be propagated
by differences in DNA methylation, post-translational histone modifications, and
deposition of histone variants. Mounting evidence also indicates that small interfering
RNA (siRNA)-mediated mechanisms play central roles in setting up and maintaining
states of gene activity. Much of the epigenetic machinery of many organisms, including
Arabidopsis, appears to be directed at silencing viruses and transposable elements,
with epigenetic regulation of endogenous genes being mostly derived from such
processes.
article_processing_charge: No
article_type: review
author:
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Steven
full_name: Henikoff, Steven
last_name: Henikoff
citation:
ama: 'Zilberman D, Henikoff S. Epigenetic inheritance in Arabidopsis: Selective
silence. Current Opinion in Genetics and Development. 2005;15(5):557-562.
doi:10.1016/j.gde.2005.07.002'
apa: 'Zilberman, D., & Henikoff, S. (2005). Epigenetic inheritance in Arabidopsis:
Selective silence. Current Opinion in Genetics and Development. Elsevier.
https://doi.org/10.1016/j.gde.2005.07.002'
chicago: 'Zilberman, Daniel, and Steven Henikoff. “Epigenetic Inheritance in Arabidopsis:
Selective Silence.” Current Opinion in Genetics and Development. Elsevier,
2005. https://doi.org/10.1016/j.gde.2005.07.002.'
ieee: 'D. Zilberman and S. Henikoff, “Epigenetic inheritance in Arabidopsis: Selective
silence,” Current Opinion in Genetics and Development, vol. 15, no. 5.
Elsevier, pp. 557–562, 2005.'
ista: 'Zilberman D, Henikoff S. 2005. Epigenetic inheritance in Arabidopsis: Selective
silence. Current Opinion in Genetics and Development. 15(5), 557–562.'
mla: 'Zilberman, Daniel, and Steven Henikoff. “Epigenetic Inheritance in Arabidopsis:
Selective Silence.” Current Opinion in Genetics and Development, vol. 15,
no. 5, Elsevier, 2005, pp. 557–62, doi:10.1016/j.gde.2005.07.002.'
short: D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15
(2005) 557–562.
date_created: 2021-06-08T09:05:56Z
date_published: 2005-10-01T00:00:00Z
date_updated: 2021-12-14T09:13:13Z
department:
- _id: DaZi
doi: 10.1016/j.gde.2005.07.002
extern: '1'
external_id:
pmid:
- '16085410'
intvolume: ' 15'
issue: '5'
language:
- iso: eng
month: '10'
oa_version: None
page: 557-562
pmid: 1
publication: Current Opinion in Genetics and Development
publication_identifier:
issn:
- 0959-437X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Epigenetic inheritance in Arabidopsis: Selective silence'
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 15
year: '2005'
...
---
_id: '4624'
abstract:
- lang: eng
text: Surveying results from [5] and [6], we motivate and introduce the theory behind
formalizing rich interfaces for software and hardware components. Rich interfaces
specify the protocol aspects of component interaction. Their formalization, called
interface automata, permits a compiler to check the compatibility of component
interaction protocols. Interface automata support incremental design and independent
implementability. Incremental design means that the compatibility checking of
interfaces can proceed for partial system descriptions, without knowing the interfaces
of all components. Independent implementability means that compatible interfaces
can be refined separately, while still maintaining compatibility.
alternative_title:
- 'NATO Science Series: Mathematics, Physics, and Chemistry'
author:
- first_name: Luca
full_name: de Alfaro, Luca
last_name: De Alfaro
- first_name: Thomas A
full_name: Thomas Henzinger
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
citation:
ama: 'De Alfaro L, Henzinger TA. Interface-based design. In: Vol 195. Springer;
2005:83-104. doi:10.1007/1-4020-3532-2_3'
apa: De Alfaro, L., & Henzinger, T. A. (2005). Interface-based design (Vol.
195, pp. 83–104). Presented at the Engineering Theories of Software Intensive
Systems, Springer. https://doi.org/10.1007/1-4020-3532-2_3
chicago: De Alfaro, Luca, and Thomas A Henzinger. “Interface-Based Design,” 195:83–104.
Springer, 2005. https://doi.org/10.1007/1-4020-3532-2_3.
ieee: L. De Alfaro and T. A. Henzinger, “Interface-based design,” presented at the
Engineering Theories of Software Intensive Systems, 2005, vol. 195, pp. 83–104.
ista: 'De Alfaro L, Henzinger TA. 2005. Interface-based design. Engineering Theories
of Software Intensive Systems, NATO Science Series: Mathematics, Physics, and
Chemistry, vol. 195, 83–104.'
mla: De Alfaro, Luca, and Thomas A. Henzinger. Interface-Based Design. Vol.
195, Springer, 2005, pp. 83–104, doi:10.1007/1-4020-3532-2_3.
short: L. De Alfaro, T.A. Henzinger, in:, Springer, 2005, pp. 83–104.
conference:
name: Engineering Theories of Software Intensive Systems
date_created: 2018-12-11T12:09:49Z
date_published: 2005-07-15T00:00:00Z
date_updated: 2021-01-12T08:00:36Z
day: '15'
doi: 10.1007/1-4020-3532-2_3
extern: 1
intvolume: ' 195'
month: '07'
page: 83 - 104
publication_status: published
publisher: Springer
publist_id: '85'
quality_controlled: 0
status: public
title: Interface-based design
type: conference
volume: 195
year: '2005'
...
---
_id: '4625'
abstract:
- lang: eng
text: |-
Temporal logic is two-valued: formulas are interpreted as either true or false. When applied to the analysis of stochastic systems, or systems with imprecise formal models, temporal logic is therefore fragile: even small changes in the model can lead to opposite truth values for a specification. We present a generalization of the branching-time logic CTL which achieves robustness with respect to model perturbations by giving a quantitative interpretation to predicates and logical operators, and by discounting the importance of events according to how late they occur. In every state, the value of a formula is a real number in the interval [0,1], where 1 corresponds to truth and 0 to falsehood. The boolean operators and and or are replaced by min and max, the path quantifiers ∃ and ∀ determine sup and inf over all paths from a given state, and the temporal operators ⋄ and □ specify sup and inf over a given path; a new operator averages all values along a path. Furthermore, all path operators are discounted by a parameter that can be chosen to give more weight to states that are closer to the beginning of the path.
We interpret the resulting logic DCTL over transition systems, Markov chains, and Markov decision processes. We present two semantics for DCTL: a path semantics, inspired by the standard interpretation of state and path formulas in CTL, and a fixpoint semantics, inspired by the μ-calculus evaluation of CTL formulas. We show that, while these semantics coincide for CTL, they differ for DCTL, and we provide model-checking algorithms for both semantics.
author:
- first_name: Luca
full_name: de Alfaro, Luca
last_name: De Alfaro
- first_name: Marco
full_name: Faella, Marco
last_name: Faella
- first_name: Thomas A
full_name: Thomas Henzinger
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Ritankar
full_name: Majumdar, Ritankar S
last_name: Majumdar
- first_name: Mariëlle
full_name: Stoelinga, Mariëlle
last_name: Stoelinga
citation:
ama: De Alfaro L, Faella M, Henzinger TA, Majumdar R, Stoelinga M. Model checking
discounted temporal properties. Theoretical Computer Science. 2005;345(1):139-170.
doi:10.1016/j.tcs.2005.07.033
apa: De Alfaro, L., Faella, M., Henzinger, T. A., Majumdar, R., & Stoelinga,
M. (2005). Model checking discounted temporal properties. Theoretical Computer
Science. Elsevier. https://doi.org/10.1016/j.tcs.2005.07.033
chicago: De Alfaro, Luca, Marco Faella, Thomas A Henzinger, Ritankar Majumdar, and
Mariëlle Stoelinga. “Model Checking Discounted Temporal Properties.” Theoretical
Computer Science. Elsevier, 2005. https://doi.org/10.1016/j.tcs.2005.07.033.
ieee: L. De Alfaro, M. Faella, T. A. Henzinger, R. Majumdar, and M. Stoelinga, “Model
checking discounted temporal properties,” Theoretical Computer Science,
vol. 345, no. 1. Elsevier, pp. 139–170, 2005.
ista: De Alfaro L, Faella M, Henzinger TA, Majumdar R, Stoelinga M. 2005. Model
checking discounted temporal properties. Theoretical Computer Science. 345(1),
139–170.
mla: De Alfaro, Luca, et al. “Model Checking Discounted Temporal Properties.” Theoretical
Computer Science, vol. 345, no. 1, Elsevier, 2005, pp. 139–70, doi:10.1016/j.tcs.2005.07.033.
short: L. De Alfaro, M. Faella, T.A. Henzinger, R. Majumdar, M. Stoelinga, Theoretical
Computer Science 345 (2005) 139–170.
date_created: 2018-12-11T12:09:49Z
date_published: 2005-11-21T00:00:00Z
date_updated: 2021-01-12T08:00:37Z
day: '21'
doi: 10.1016/j.tcs.2005.07.033
extern: 1
intvolume: ' 345'
issue: '1'
month: '11'
page: 139 - 170
publication: Theoretical Computer Science
publication_status: published
publisher: Elsevier
publist_id: '80'
quality_controlled: 0
status: public
title: Model checking discounted temporal properties
type: journal_article
volume: 345
year: '2005'
...
---
_id: '575'
abstract:
- lang: eng
text: We present the first demonstration of Jozsa's "counterfactual computation",
using an optical Grover's search algorithm. We put the algorithm in a superposition
of 'running' and 'not-running', obtaining information even though the algorithm
does not run.
alternative_title:
- QELS
author:
- first_name: Onur
full_name: Onur Hosten
id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
last_name: Hosten
orcid: 0000-0002-2031-204X
- first_name: Matthew
full_name: Rakher, Matthew T
last_name: Rakher
- first_name: Julio
full_name: Barreiro, Julio T
last_name: Barreiro
- first_name: Nicholas
full_name: Peters, Nicholas A
last_name: Peters
- first_name: Paul
full_name: Kwiat, Paul G
last_name: Kwiat
citation:
ama: 'Hosten O, Rakher M, Barreiro J, Peters N, Kwiat P. Counterfactual quantum
computation. In: Vol 1. IEEE; 2005:365-367. doi:
10.1109/QELS.2005.1548783'
apa: 'Hosten, O., Rakher, M., Barreiro, J., Peters, N., & Kwiat, P. (2005).
Counterfactual quantum computation (Vol. 1, pp. 365–367). Presented at the QELS:
Quantum Electronics and Laser Science, IEEE. https://doi.org/
10.1109/QELS.2005.1548783'
chicago: Hosten, Onur, Matthew Rakher, Julio Barreiro, Nicholas Peters, and Paul
Kwiat. “Counterfactual Quantum Computation,” 1:365–67. IEEE, 2005. https://doi.org/ 10.1109/QELS.2005.1548783.
ieee: 'O. Hosten, M. Rakher, J. Barreiro, N. Peters, and P. Kwiat, “Counterfactual
quantum computation,” presented at the QELS: Quantum Electronics and Laser Science,
2005, vol. 1, pp. 365–367.'
ista: 'Hosten O, Rakher M, Barreiro J, Peters N, Kwiat P. 2005. Counterfactual quantum
computation. QELS: Quantum Electronics and Laser Science, QELS, vol. 1, 365–367.'
mla: Hosten, Onur, et al. Counterfactual Quantum Computation. Vol. 1, IEEE,
2005, pp. 365–67, doi: 10.1109/QELS.2005.1548783.
short: O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, in:, IEEE, 2005,
pp. 365–367.
conference:
name: 'QELS: Quantum Electronics and Laser Science'
date_created: 2018-12-11T11:47:16Z
date_published: 2005-01-01T00:00:00Z
date_updated: 2021-01-12T08:03:18Z
day: '01'
doi: ' 10.1109/QELS.2005.1548783'
extern: 1
intvolume: ' 1'
month: '01'
page: 365 - 367
publication_status: published
publisher: IEEE
publist_id: '7237'
quality_controlled: 0
status: public
title: Counterfactual quantum computation
type: conference
volume: 1
year: '2005'
...
---
_id: '6153'
abstract:
- lang: eng
text: A current challenge in neuroscience is to bridge the gaps between genes, proteins,
neurons, neural circuits, and behavior in a single animal model. The nematode
Caenorhabditis elegans has unique features that facilitate this synthesis. Its
nervous system includes exactly 302 neurons, and their pattern of synaptic connectivity
is known. With only five olfactory neurons, C. elegans can dynamically respond
to dozens of attractive and repellant odors. Thermosensory neurons enable the
nematode to remember its cultivation temperature and to track narrow isotherms.
Polymodal sensory neurons detect a wide range of nociceptive cues and signal robust
escape responses. Pairing of sensory stimuli leads to long-lived changes in behavior
consistent with associative learning. Worms exhibit social behaviors and complex
ultradian rhythms driven by Ca2+ oscillators with clock-like properties. Genetic
analysis has identified gene products required for nervous system function and
elucidated the molecular and neural bases of behaviors.
article_processing_charge: No
article_type: original
author:
- first_name: Mario
full_name: de Bono, Mario
id: 4E3FF80E-F248-11E8-B48F-1D18A9856A87
last_name: de Bono
orcid: 0000-0001-8347-0443
- first_name: Andres
full_name: Villu Maricq, Andres
last_name: Villu Maricq
citation:
ama: de Bono M, Villu Maricq A. Neuronal substrates of complex behaviors in C. elegans.
Annual Review of Neuroscience. 2005;28:451-501. doi:10.1146/annurev.neuro.27.070203.144259
apa: de Bono, M., & Villu Maricq, A. (2005). Neuronal substrates of complex
behaviors in C. elegans. Annual Review of Neuroscience. Annual Reviews.
https://doi.org/10.1146/annurev.neuro.27.070203.144259
chicago: Bono, Mario de, and Andres Villu Maricq. “Neuronal Substrates of Complex
Behaviors in C. Elegans.” Annual Review of Neuroscience. Annual Reviews,
2005. https://doi.org/10.1146/annurev.neuro.27.070203.144259.
ieee: M. de Bono and A. Villu Maricq, “Neuronal substrates of complex behaviors
in C. elegans,” Annual Review of Neuroscience, vol. 28. Annual Reviews,
pp. 451–501, 2005.
ista: de Bono M, Villu Maricq A. 2005. Neuronal substrates of complex behaviors
in C. elegans. Annual Review of Neuroscience. 28, 451–501.
mla: de Bono, Mario, and Andres Villu Maricq. “Neuronal Substrates of Complex Behaviors
in C. Elegans.” Annual Review of Neuroscience, vol. 28, Annual Reviews,
2005, pp. 451–501, doi:10.1146/annurev.neuro.27.070203.144259.
short: M. de Bono, A. Villu Maricq, Annual Review of Neuroscience 28 (2005) 451–501.
date_created: 2019-03-21T09:31:29Z
date_published: 2005-07-21T00:00:00Z
date_updated: 2025-07-01T06:45:21Z
day: '21'
doi: 10.1146/annurev.neuro.27.070203.144259
extern: '1'
external_id:
pmid:
- '16022603'
intvolume: ' 28'
language:
- iso: eng
month: '07'
oa_version: None
page: 451-501
pmid: 1
publication: Annual Review of Neuroscience
publication_identifier:
eissn:
- 1545-4126
issn:
- 0147-006X
publication_status: published
publisher: Annual Reviews
quality_controlled: '1'
status: public
title: Neuronal substrates of complex behaviors in C. elegans
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2005'
...