---
_id: '13093'
abstract:
- lang: eng
  text: The direct, solid state, and reversible conversion between heat and electricity
    using thermoelectric devices finds numerous potential uses, especially around
    room temperature. However, the relatively high material processing cost limits
    their real applications. Silver selenide (Ag2Se) is one of the very few n-type
    thermoelectric (TE) materials for room-temperature applications. Herein, we report
    a room temperature, fast, and aqueous-phase synthesis approach to produce Ag2Se,
    which can be extended to other metal chalcogenides. These materials reach TE figures
    of merit (zT) of up to 0.76 at 380 K. To improve these values, bismuth sulfide
    (Bi2S3) particles also prepared in an aqueous solution are incorporated into the
    Ag2Se matrix. In this way, a series of Ag2Se/Bi2S3 composites with Bi2S3 wt %
    of 0.5, 1.0, and 1.5 are prepared by solution blending and hot-press sintering.
    The presence of Bi2S3 significantly improves the Seebeck coefficient and power
    factor while at the same time decreasing the thermal conductivity with no apparent
    drop in electrical conductivity. Thus, a maximum zT value of 0.96 is achieved
    in the composites with 1.0 wt % Bi2S3 at 370 K. Furthermore, a high average zT
    value (zTave) of 0.93 in the 300–390 K range is demonstrated.
acknowledgement: 'Open Access is funded by the Austrian Science Fund (FWF). B.N.,
  M.L., Y.Z., K.X., and X.H. thank the China Scholarship Council (CSC) for the scholarship
  support. C.C. received funding from the FWF “Lise Meitner Fellowship” grant agreement
  M 2889-N. M.I. acknowledges the financial support from ISTA and the Werner Siemens
  Foundation. ICN2 acknowledges funding from Generalitat de Catalunya 2021SGR00457
  and project NANOGEN (PID2020-116093RB-C43) funded by MCIN/AEI/10.13039/501100011033/.
  ICN2 was supported by the Severo Ochoa program from Spanish MCIN/AEI (Grant No.:
  CEX2021-001214-S) and was funded by the CERCA Programme/Generalitat de Catalunya.
  J.L. is a Serra Húnter Fellow and is grateful to the ICREA Academia program and
  projects MICINN/FEDER PID2021-124572OB-C31 and 2021 SGR 01061. K.H.L. acknowledges
  support from the National Natural Science Foundation of China (22208293). This study
  is part of the Advanced Materials programme and was supported by MCIN with funding
  from European Union NextGenerationEU (PRTR-C17.I1) and by Generalitat de Catalunya.'
article_processing_charge: Yes (in subscription journal)
article_type: review
author:
- first_name: Bingfei
  full_name: Nan, Bingfei
  last_name: 'Nan'
- first_name: Mengyao
  full_name: Li, Mengyao
  last_name: Li
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Ke
  full_name: Xiao, Ke
  last_name: Xiao
- first_name: Khak Ho
  full_name: Lim, Khak Ho
  last_name: Lim
- first_name: Cheng
  full_name: Chang, Cheng
  id: 9E331C2E-9F27-11E9-AE48-5033E6697425
  last_name: Chang
  orcid: 0000-0002-9515-4277
- first_name: Xu
  full_name: Han, Xu
  last_name: Han
- first_name: Yong
  full_name: Zuo, Yong
  last_name: Zuo
- first_name: Junshan
  full_name: Li, Junshan
  last_name: Li
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Jordi
  full_name: Llorca, Jordi
  last_name: Llorca
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Nan B, Li M, Zhang Y, et al. Engineering of thermoelectric composites based
    on silver selenide in aqueous solution and ambient temperature. <i>ACS Applied
    Electronic Materials</i>. 2024;6(5):2807-215. doi:<a href="https://doi.org/10.1021/acsaelm.3c00055">10.1021/acsaelm.3c00055</a>
  apa: Nan, B., Li, M., Zhang, Y., Xiao, K., Lim, K. H., Chang, C., … Cabot, A. (2024).
    Engineering of thermoelectric composites based on silver selenide in aqueous solution
    and ambient temperature. <i>ACS Applied Electronic Materials</i>. American Chemical
    Society. <a href="https://doi.org/10.1021/acsaelm.3c00055">https://doi.org/10.1021/acsaelm.3c00055</a>
  chicago: Nan, Bingfei, Mengyao Li, Yu Zhang, Ke Xiao, Khak Ho Lim, Cheng Chang,
    Xu Han, et al. “Engineering of Thermoelectric Composites Based on Silver Selenide
    in Aqueous Solution and Ambient Temperature.” <i>ACS Applied Electronic Materials</i>.
    American Chemical Society, 2024. <a href="https://doi.org/10.1021/acsaelm.3c00055">https://doi.org/10.1021/acsaelm.3c00055</a>.
  ieee: B. Nan <i>et al.</i>, “Engineering of thermoelectric composites based on silver
    selenide in aqueous solution and ambient temperature,” <i>ACS Applied Electronic
    Materials</i>, vol. 6, no. 5. American Chemical Society, pp. 2807–215, 2024.
  ista: Nan B, Li M, Zhang Y, Xiao K, Lim KH, Chang C, Han X, Zuo Y, Li J, Arbiol
    J, Llorca J, Ibáñez M, Cabot A. 2024. Engineering of thermoelectric composites
    based on silver selenide in aqueous solution and ambient temperature. ACS Applied
    Electronic Materials. 6(5), 2807–215.
  mla: Nan, Bingfei, et al. “Engineering of Thermoelectric Composites Based on Silver
    Selenide in Aqueous Solution and Ambient Temperature.” <i>ACS Applied Electronic
    Materials</i>, vol. 6, no. 5, American Chemical Society, 2024, pp. 2807–215, doi:<a
    href="https://doi.org/10.1021/acsaelm.3c00055">10.1021/acsaelm.3c00055</a>.
  short: B. Nan, M. Li, Y. Zhang, K. Xiao, K.H. Lim, C. Chang, X. Han, Y. Zuo, J.
    Li, J. Arbiol, J. Llorca, M. Ibáñez, A. Cabot, ACS Applied Electronic Materials
    6 (2024) 2807–215.
date_created: 2023-05-28T22:01:03Z
date_published: 2024-05-28T00:00:00Z
date_updated: 2025-04-14T09:29:33Z
day: '28'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1021/acsaelm.3c00055
external_id:
  isi:
  - '000986859000001'
  pmid:
  - '38828037'
file:
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  creator: dernst
  date_created: 2024-07-16T07:54:21Z
  date_updated: 2024-07-16T07:54:21Z
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has_accepted_license: '1'
intvolume: '         6'
isi: 1
issue: '5'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 2807-215
pmid: 1
project:
- _id: 9B8804FC-BA93-11EA-9121-9846C619BF3A
  grant_number: M02889
  name: Bottom-up Engineering for Thermoelectric Applications
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
  name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
    Semiconductors for Waste Heat Recovery'
publication: ACS Applied Electronic Materials
publication_identifier:
  eissn:
  - 2637-6113
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Engineering of thermoelectric composites based on silver selenide in aqueous
  solution and ambient temperature
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '13129'
abstract:
- lang: eng
  text: "We study the representative volume element (RVE) method, which is a method
    to approximately infer the effective behavior ahom of a stationary random medium.
    The latter is described by a coefficient field a(x) generated from a given ensemble
    ⟨⋅⟩ and the corresponding linear elliptic operator −∇⋅a∇. In line with the theory
    of homogenization, the method proceeds by computing d=3 correctors (d denoting
    the space dimension). To be numerically tractable, this computation has to be
    done on a finite domain: the so-called representative volume element, i.e., a
    large box with, say, periodic boundary conditions. The main message of this article
    is: Periodize the ensemble instead of its realizations. By this, we mean that
    it is better to sample from a suitably periodized ensemble than to periodically
    extend the restriction of a realization a(x) from the whole-space ensemble ⟨⋅⟩.
    We make this point by investigating the bias (or systematic error), i.e., the
    difference between ahom and the expected value of the RVE method, in terms of
    its scaling w.r.t. the lateral size L of the box. In case of periodizing a(x),
    we heuristically argue that this error is generically O(L−1). In case of a suitable
    periodization of ⟨⋅⟩\r\n, we rigorously show that it is O(L−d). In fact, we give
    a characterization of the leading-order error term for both strategies and argue
    that even in the isotropic case it is generically non-degenerate. We carry out
    the rigorous analysis in the convenient setting of ensembles ⟨⋅⟩\r\n of Gaussian
    type, which allow for a straightforward periodization, passing via the (integrable)
    covariance function. This setting has also the advantage of making the Price theorem
    and the Malliavin calculus available for optimal stochastic estimates of correctors.
    We actually need control of second-order correctors to capture the leading-order
    error term. This is due to inversion symmetry when applying the two-scale expansion
    to the Green function. As a bonus, we present a stream-lined strategy to estimate
    the error in a higher-order two-scale expansion of the Green function."
acknowledgement: Open access funding provided by Institute of Science and Technology
  (IST Austria).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Nicolas
  full_name: Clozeau, Nicolas
  id: fea1b376-906f-11eb-847d-b2c0cf46455b
  last_name: Clozeau
- first_name: Marc
  full_name: Josien, Marc
  last_name: Josien
- first_name: Felix
  full_name: Otto, Felix
  last_name: Otto
- first_name: Qiang
  full_name: Xu, Qiang
  last_name: Xu
citation:
  ama: 'Clozeau N, Josien M, Otto F, Xu Q. Bias in the representative volume element
    method: Periodize the ensemble instead of its realizations. <i>Foundations of
    Computational Mathematics</i>. 2024;24:1305-1387. doi:<a href="https://doi.org/10.1007/s10208-023-09613-y">10.1007/s10208-023-09613-y</a>'
  apa: 'Clozeau, N., Josien, M., Otto, F., &#38; Xu, Q. (2024). Bias in the representative
    volume element method: Periodize the ensemble instead of its realizations. <i>Foundations
    of Computational Mathematics</i>. Springer Nature. <a href="https://doi.org/10.1007/s10208-023-09613-y">https://doi.org/10.1007/s10208-023-09613-y</a>'
  chicago: 'Clozeau, Nicolas, Marc Josien, Felix Otto, and Qiang Xu. “Bias in the
    Representative Volume Element Method: Periodize the Ensemble Instead of Its Realizations.”
    <i>Foundations of Computational Mathematics</i>. Springer Nature, 2024. <a href="https://doi.org/10.1007/s10208-023-09613-y">https://doi.org/10.1007/s10208-023-09613-y</a>.'
  ieee: 'N. Clozeau, M. Josien, F. Otto, and Q. Xu, “Bias in the representative volume
    element method: Periodize the ensemble instead of its realizations,” <i>Foundations
    of Computational Mathematics</i>, vol. 24. Springer Nature, pp. 1305–1387, 2024.'
  ista: 'Clozeau N, Josien M, Otto F, Xu Q. 2024. Bias in the representative volume
    element method: Periodize the ensemble instead of its realizations. Foundations
    of Computational Mathematics. 24, 1305–1387.'
  mla: 'Clozeau, Nicolas, et al. “Bias in the Representative Volume Element Method:
    Periodize the Ensemble Instead of Its Realizations.” <i>Foundations of Computational
    Mathematics</i>, vol. 24, Springer Nature, 2024, pp. 1305–87, doi:<a href="https://doi.org/10.1007/s10208-023-09613-y">10.1007/s10208-023-09613-y</a>.'
  short: N. Clozeau, M. Josien, F. Otto, Q. Xu, Foundations of Computational Mathematics
    24 (2024) 1305–1387.
corr_author: '1'
date_created: 2023-06-11T22:00:40Z
date_published: 2024-08-01T00:00:00Z
date_updated: 2025-01-09T07:37:50Z
day: '01'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1007/s10208-023-09613-y
external_id:
  isi:
  - '000999623100001'
file:
- access_level: open_access
  checksum: ec0582e2b55e2703a7da2686ae0d682e
  content_type: application/pdf
  creator: dernst
  date_created: 2025-01-09T07:36:57Z
  date_updated: 2025-01-09T07:36:57Z
  file_id: '18782'
  file_name: 2024_FoundCompMath_Clozeau.pdf
  file_size: 1454406
  relation: main_file
  success: 1
file_date_updated: 2025-01-09T07:36:57Z
has_accepted_license: '1'
intvolume: '        24'
isi: 1
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 1305-1387
publication: Foundations of Computational Mathematics
publication_identifier:
  eissn:
  - 1615-3383
  issn:
  - 1615-3375
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Bias in the representative volume element method: Periodize the ensemble instead
  of its realizations'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2024'
...
---
_id: '13271'
abstract:
- lang: eng
  text: "In this paper, we prove the convexity of trace functionals (A,B,C)↦Tr|BpACq|s,\r\nfor
    parameters (p, q, s) that are best possible, where B and C are any n-by-n positive-definite
    matrices, and A is any n-by-n matrix. We also obtain the monotonicity versions
    of trace functionals of this type. As applications, we extend some results in
    Carlen et al. (Linear Algebra Appl 490:174–185, 2016), Hiai and Petz (Publ Res
    Inst Math Sci 48(3):525-542, 2012) and resolve a conjecture in Al-Rashed and Zegarliński
    (Infin Dimens Anal Quantum Probab Relat Top 17(4):1450029, 2014) in the matrix
    setting. Other conjectures in Al-Rashed and Zegarliński (Infin Dimens Anal Quantum
    Probab Relat Top 17(4):1450029, 2014) will also be discussed. We also show that
    some related trace functionals are not concave in general. Such concavity results
    were expected to hold in different problems."
acknowledgement: I am grateful to Boguslaw Zegarliński for asking me the questions
  in [3] and for helpful communication. I also want to thank Paata Ivanisvili for
  drawing [25] to my attention and for useful correspondence. Many thanks to the anonymous
  referee for the valuable comments and for pointing out some errors in an earlier
  version of the paper. This work is partially supported by the European Union’s Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement
  No. 754411 and the Lise Meitner fellowship, Austrian Science Fund (FWF) M3337.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Haonan
  full_name: Zhang, Haonan
  id: D8F41E38-9E66-11E9-A9E2-65C2E5697425
  last_name: Zhang
citation:
  ama: Zhang H. Some convexity and monotonicity results of trace functionals. <i>Annales
    Henri Poincare</i>. 2024;25:2087-2106. doi:<a href="https://doi.org/10.1007/s00023-023-01345-7">10.1007/s00023-023-01345-7</a>
  apa: Zhang, H. (2024). Some convexity and monotonicity results of trace functionals.
    <i>Annales Henri Poincare</i>. Springer Nature. <a href="https://doi.org/10.1007/s00023-023-01345-7">https://doi.org/10.1007/s00023-023-01345-7</a>
  chicago: Zhang, Haonan. “Some Convexity and Monotonicity Results of Trace Functionals.”
    <i>Annales Henri Poincare</i>. Springer Nature, 2024. <a href="https://doi.org/10.1007/s00023-023-01345-7">https://doi.org/10.1007/s00023-023-01345-7</a>.
  ieee: H. Zhang, “Some convexity and monotonicity results of trace functionals,”
    <i>Annales Henri Poincare</i>, vol. 25. Springer Nature, pp. 2087–2106, 2024.
  ista: Zhang H. 2024. Some convexity and monotonicity results of trace functionals.
    Annales Henri Poincare. 25, 2087–2106.
  mla: Zhang, Haonan. “Some Convexity and Monotonicity Results of Trace Functionals.”
    <i>Annales Henri Poincare</i>, vol. 25, Springer Nature, 2024, pp. 2087–106, doi:<a
    href="https://doi.org/10.1007/s00023-023-01345-7">10.1007/s00023-023-01345-7</a>.
  short: H. Zhang, Annales Henri Poincare 25 (2024) 2087–2106.
corr_author: '1'
date_created: 2023-07-23T22:01:15Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2025-04-14T07:43:55Z
day: '01'
department:
- _id: JaMa
doi: 10.1007/s00023-023-01345-7
ec_funded: 1
external_id:
  arxiv:
  - '2108.05785'
  isi:
  - '001025709100001'
intvolume: '        25'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2108.05785
month: '04'
oa: 1
oa_version: Preprint
page: 2087-2106
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: eb958bca-77a9-11ec-83b8-c565cb50d8d6
  grant_number: M03337
  name: Curvature-dimension in noncommutative analysis
publication: Annales Henri Poincare
publication_identifier:
  issn:
  - 1424-0637
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Some convexity and monotonicity results of trace functionals
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2024'
...
---
_id: '13318'
abstract:
- lang: eng
  text: Bohnenblust–Hille inequalities for Boolean cubes have been proven with dimension-free
    constants that grow subexponentially in the degree (Defant et al. in Math Ann
    374(1):653–680, 2019). Such inequalities have found great applications in learning
    low-degree Boolean functions (Eskenazis and Ivanisvili in Proceedings of the 54th
    annual ACM SIGACT symposium on theory of computing, pp 203–207, 2022). Motivated
    by learning quantum observables, a qubit analogue of Bohnenblust–Hille inequality
    for Boolean cubes was recently conjectured in Rouzé et al. (Quantum Talagrand,
    KKL and Friedgut’s theorems and the learnability of quantum Boolean functions,
    2022. arXiv preprint arXiv:2209.07279). The conjecture was resolved in Huang et
    al. (Learning to predict arbitrary quantum processes, 2022. arXiv preprint arXiv:2210.14894).
    In this paper, we give a new proof of these Bohnenblust–Hille inequalities for
    qubit system with constants that are dimension-free and of exponential growth
    in the degree. As a consequence, we obtain a junta theorem for low-degree polynomials.
    Using similar ideas, we also study learning problems of low degree quantum observables
    and Bohr’s radius phenomenon on quantum Boolean cubes.
acknowledgement: The research of A.V. is supported by NSF DMS-1900286, DMS-2154402
  and by Hausdorff Center for Mathematics. H.Z. is supported by the Lise Meitner fellowship,
  Austrian Science Fund (FWF) M3337. This work is partially supported by NSF DMS-1929284
  while both authors were in residence at the Institute for Computational and Experimental
  Research in Mathematics in Providence, RI, during the Harmonic Analysis and Convexity
  program.
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Alexander
  full_name: Volberg, Alexander
  last_name: Volberg
- first_name: Haonan
  full_name: Zhang, Haonan
  id: D8F41E38-9E66-11E9-A9E2-65C2E5697425
  last_name: Zhang
citation:
  ama: Volberg A, Zhang H. Noncommutative Bohnenblust–Hille inequalities. <i>Mathematische
    Annalen</i>. 2024;389:1657-1676. doi:<a href="https://doi.org/10.1007/s00208-023-02680-0">10.1007/s00208-023-02680-0</a>
  apa: Volberg, A., &#38; Zhang, H. (2024). Noncommutative Bohnenblust–Hille inequalities.
    <i>Mathematische Annalen</i>. Springer Nature. <a href="https://doi.org/10.1007/s00208-023-02680-0">https://doi.org/10.1007/s00208-023-02680-0</a>
  chicago: Volberg, Alexander, and Haonan Zhang. “Noncommutative Bohnenblust–Hille
    Inequalities.” <i>Mathematische Annalen</i>. Springer Nature, 2024. <a href="https://doi.org/10.1007/s00208-023-02680-0">https://doi.org/10.1007/s00208-023-02680-0</a>.
  ieee: A. Volberg and H. Zhang, “Noncommutative Bohnenblust–Hille inequalities,”
    <i>Mathematische Annalen</i>, vol. 389. Springer Nature, pp. 1657–1676, 2024.
  ista: Volberg A, Zhang H. 2024. Noncommutative Bohnenblust–Hille inequalities. Mathematische
    Annalen. 389, 1657–1676.
  mla: Volberg, Alexander, and Haonan Zhang. “Noncommutative Bohnenblust–Hille Inequalities.”
    <i>Mathematische Annalen</i>, vol. 389, Springer Nature, 2024, pp. 1657–76, doi:<a
    href="https://doi.org/10.1007/s00208-023-02680-0">10.1007/s00208-023-02680-0</a>.
  short: A. Volberg, H. Zhang, Mathematische Annalen 389 (2024) 1657–1676.
corr_author: '1'
date_created: 2023-07-30T22:01:03Z
date_published: 2024-06-01T00:00:00Z
date_updated: 2025-04-23T07:50:55Z
day: '01'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s00208-023-02680-0
external_id:
  arxiv:
  - '2210.14468'
  isi:
  - '001035665500001'
  pmid:
  - '38751410'
file:
- access_level: open_access
  checksum: 56e67756e4c6c97589a8385e15ea2d2a
  content_type: application/pdf
  creator: dernst
  date_created: 2024-07-22T09:38:15Z
  date_updated: 2024-07-22T09:38:15Z
  file_id: '17299'
  file_name: 2024_MathAnnalen_Volberg.pdf
  file_size: 351796
  relation: main_file
  success: 1
file_date_updated: 2024-07-22T09:38:15Z
has_accepted_license: '1'
intvolume: '       389'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 1657-1676
pmid: 1
project:
- _id: eb958bca-77a9-11ec-83b8-c565cb50d8d6
  grant_number: M03337
  name: Curvature-dimension in noncommutative analysis
publication: Mathematische Annalen
publication_identifier:
  eissn:
  - 1432-1807
  issn:
  - 0025-5831
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Noncommutative Bohnenblust–Hille inequalities
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 389
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '19800'
abstract:
- lang: eng
  text: "This archive contains all the code and data necessary to reproduce the results
    presented in the \r\n\"Mapping the attractor landscape of Boolean networks\" paper."
article_processing_charge: No
author:
- first_name: Van Giang
  full_name: trinh, Van Giang
  last_name: trinh
- first_name: Kyu Hyong
  full_name: Park, Kyu Hyong
  last_name: Park
- first_name: Samuel
  full_name: Pastva, Samuel
  id: 07c5ea74-f61c-11ec-a664-aa7c5d957b2b
  last_name: Pastva
  orcid: 0000-0003-1993-0331
- first_name: Jordan
  full_name: Rozum, Jordan
  last_name: Rozum
citation:
  ama: trinh VG, Park KH, Pastva S, Rozum J. Mapping the attractor landscape of Boolean
    networks. 2024. doi:<a href="https://doi.org/10.5281/ZENODO.13854759">10.5281/ZENODO.13854759</a>
  apa: trinh, V. G., Park, K. H., Pastva, S., &#38; Rozum, J. (2024). Mapping the
    attractor landscape of Boolean networks. Zenodo. <a href="https://doi.org/10.5281/ZENODO.13854759">https://doi.org/10.5281/ZENODO.13854759</a>
  chicago: trinh, Van Giang, Kyu Hyong Park, Samuel Pastva, and Jordan Rozum. “Mapping
    the Attractor Landscape of Boolean Networks.” Zenodo, 2024. <a href="https://doi.org/10.5281/ZENODO.13854759">https://doi.org/10.5281/ZENODO.13854759</a>.
  ieee: V. G. trinh, K. H. Park, S. Pastva, and J. Rozum, “Mapping the attractor landscape
    of Boolean networks.” Zenodo, 2024.
  ista: trinh VG, Park KH, Pastva S, Rozum J. 2024. Mapping the attractor landscape
    of Boolean networks, Zenodo, <a href="https://doi.org/10.5281/ZENODO.13854759">10.5281/ZENODO.13854759</a>.
  mla: trinh, Van Giang, et al. <i>Mapping the Attractor Landscape of Boolean Networks</i>.
    Zenodo, 2024, doi:<a href="https://doi.org/10.5281/ZENODO.13854759">10.5281/ZENODO.13854759</a>.
  short: V.G. trinh, K.H. Park, S. Pastva, J. Rozum, (2024).
date_created: 2025-06-10T07:10:01Z
date_published: 2024-09-28T00:00:00Z
date_updated: 2025-09-30T12:46:33Z
day: '28'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.5281/ZENODO.13854759
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.13854760
month: '09'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '19796'
    relation: used_in_publication
    status: public
status: public
title: Mapping the attractor landscape of Boolean networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19809'
abstract:
- lang: eng
  text: In many physical situations in which many-body assemblies exist at temperature
    T, a characteristic quantum-mechanical time scale of approximately h/kbT can be
    identified in both theory and experiment, leading to speculation that it may be
    the shortest meaningful time in such circumstances. This behavior can be investigated
    by probing the scattering rate of electrons in a broad class of materials often
    referred to as “strongly correlated metals”. It is clear that in some cases only
    electron–electron scattering can be its cause, while in others it arises from
    high-temperature scattering of electrons from quantized lattice vibrations, i.e.,
    phonons. In metallic oxides, which are among the most studied materials, analysis
    of electrical transport does not satisfactorily identify the relevant scattering
    mechanism at “high” temperatures near room temperature. We therefore employ a
    contactless optical method to measure thermal diffusivity in two Ru-based layered
    perovskites, Sr3Ru2O7 and Sr2RuO4, and use the measurements to extract the dimensionless
    Lorenz ratio. By comparing our results to the literature data on both conventional
    and unconventional metals, we show how the analysis of high-temperature thermal
    transport can both give important insight into dominant scattering mechanisms
    and be offered as a stringent test of theories attempting to explain anomalous
    scattering.
article_processing_charge: No
article_type: original
author:
- first_name: Fei
  full_name: Sun, Fei
  last_name: Sun
- first_name: Simli
  full_name: Mishra, Simli
  last_name: Mishra
- first_name: Ulrike
  full_name: Stockert, Ulrike
  last_name: Stockert
- first_name: Ramzy
  full_name: Daou, Ramzy
  last_name: Daou
- first_name: Naoki
  full_name: Kikugawa, Naoki
  last_name: Kikugawa
- first_name: Robin S.
  full_name: Perry, Robin S.
  last_name: Perry
- first_name: Elena
  full_name: Hassinger, Elena
  last_name: Hassinger
- first_name: Sean A.
  full_name: Hartnoll, Sean A.
  last_name: Hartnoll
- first_name: Andrew P.
  full_name: Mackenzie, Andrew P.
  last_name: Mackenzie
- first_name: Veronika
  full_name: Sunko, Veronika
  id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
  last_name: Sunko
  orcid: 0000-0003-2724-3523
citation:
  ama: Sun F, Mishra S, Stockert U, et al. The Lorenz ratio as a guide to scattering
    contributions to transport in strongly correlated metals. <i>Proceedings of the
    National Academy of Sciences</i>. 2024;121(35). doi:<a href="https://doi.org/10.1073/pnas.2318159121">10.1073/pnas.2318159121</a>
  apa: Sun, F., Mishra, S., Stockert, U., Daou, R., Kikugawa, N., Perry, R. S., …
    Sunko, V. (2024). The Lorenz ratio as a guide to scattering contributions to transport
    in strongly correlated metals. <i>Proceedings of the National Academy of Sciences</i>.
    National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.2318159121">https://doi.org/10.1073/pnas.2318159121</a>
  chicago: Sun, Fei, Simli Mishra, Ulrike Stockert, Ramzy Daou, Naoki Kikugawa, Robin
    S. Perry, Elena Hassinger, Sean A. Hartnoll, Andrew P. Mackenzie, and Veronika
    Sunko. “The Lorenz Ratio as a Guide to Scattering Contributions to Transport in
    Strongly Correlated Metals.” <i>Proceedings of the National Academy of Sciences</i>.
    National Academy of Sciences, 2024. <a href="https://doi.org/10.1073/pnas.2318159121">https://doi.org/10.1073/pnas.2318159121</a>.
  ieee: F. Sun <i>et al.</i>, “The Lorenz ratio as a guide to scattering contributions
    to transport in strongly correlated metals,” <i>Proceedings of the National Academy
    of Sciences</i>, vol. 121, no. 35. National Academy of Sciences, 2024.
  ista: Sun F, Mishra S, Stockert U, Daou R, Kikugawa N, Perry RS, Hassinger E, Hartnoll
    SA, Mackenzie AP, Sunko V. 2024. The Lorenz ratio as a guide to scattering contributions
    to transport in strongly correlated metals. Proceedings of the National Academy
    of Sciences. 121(35).
  mla: Sun, Fei, et al. “The Lorenz Ratio as a Guide to Scattering Contributions to
    Transport in Strongly Correlated Metals.” <i>Proceedings of the National Academy
    of Sciences</i>, vol. 121, no. 35, National Academy of Sciences, 2024, doi:<a
    href="https://doi.org/10.1073/pnas.2318159121">10.1073/pnas.2318159121</a>.
  short: F. Sun, S. Mishra, U. Stockert, R. Daou, N. Kikugawa, R.S. Perry, E. Hassinger,
    S.A. Hartnoll, A.P. Mackenzie, V. Sunko, Proceedings of the National Academy of
    Sciences 121 (2024).
date_created: 2025-06-10T09:12:41Z
date_published: 2024-08-27T00:00:00Z
date_updated: 2025-06-10T11:50:48Z
day: '27'
doi: 10.1073/pnas.2318159121
extern: '1'
external_id:
  pmid:
  - '39172781'
has_accepted_license: '1'
intvolume: '       121'
issue: '35'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1073/pnas.2318159121
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Lorenz ratio as a guide to scattering contributions to transport in strongly
  correlated metals
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 121
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19816'
abstract:
- lang: eng
  text: 'Understanding and manipulating emergent phases, which are themes at the forefront
    of quantum-materials research, rely on identifying their underlying symmetries.
    This general principle has been particularly prominent in materials with coupled
    electronic and magnetic degrees of freedom, in which magnetic order influences
    the electronic band structure and can lead to exotic topological effects. However,
    identifying symmetry of a magnetically ordered phase can pose a challenge, particularly
    in the presence of small domains. Here we introduce a multimodal approach for
    determining magnetic structures, which combines symmetry-sensitive optical probes,
    scattering, and group-theoretical analysis. We apply it to EuIn2⁢As2, a material
    that has received attention as a candidate axion insulator. While first-principles
    calculations predict this state on the assumption of a simple collinear antiferromagnetic
    structure, subsequent neutron-scattering measurements reveal a much more intricate
    magnetic ground state characterized by two coexisting magnetic wave vectors reached
    by successive thermal phase transitions. The proposed high- and low-temperature
    phases are a spin helix and a state with interpenetrating helical and Néel antiferromagnetic
    order termed a “broken helix,” respectively. Employing a multimodal approach,
    we identify the magnetic structure associated with these two phases of EuIn2⁢As2.
    We find that the higher-temperature phase is characterized by a variation of the
    magnetic moment amplitude from layer to layer, with the moment vanishing entirely
    in every third Eu layer. The lower-temperature structure is similar to the broken
    helix, with one important difference: Because of local strain, the relative orientation
    of the magnetic structure and the lattice is not fixed. Consequently, the symmetry
    required to protect the axion phase is not generically protected in EuIn2⁢As2,
    but we show that it can be restored if the magnetic structure is tuned with uniaxial
    strain. Finally, we present a spin Hamiltonian that identifies the spin interactions
    that account for the complex magnetic order in EuIn2⁢As2. Our work highlights
    the importance of a multimodal approach in determining the symmetry of complex
    order parameters.'
article_number: '031013'
article_processing_charge: No
article_type: original
author:
- first_name: E.
  full_name: Donoway, E.
  last_name: Donoway
- first_name: T. V.
  full_name: Trevisan, T. V.
  last_name: Trevisan
- first_name: A.
  full_name: Liebman-Peláez, A.
  last_name: Liebman-Peláez
- first_name: R. P.
  full_name: Day, R. P.
  last_name: Day
- first_name: K.
  full_name: Yamakawa, K.
  last_name: Yamakawa
- first_name: Y.
  full_name: Sun, Y.
  last_name: Sun
- first_name: J. R.
  full_name: Soh, J. R.
  last_name: Soh
- first_name: D.
  full_name: Prabhakaran, D.
  last_name: Prabhakaran
- first_name: A. T.
  full_name: Boothroyd, A. T.
  last_name: Boothroyd
- first_name: R. M.
  full_name: Fernandes, R. M.
  last_name: Fernandes
- first_name: J. G.
  full_name: Analytis, J. G.
  last_name: Analytis
- first_name: J. E.
  full_name: Moore, J. E.
  last_name: Moore
- first_name: J.
  full_name: Orenstein, J.
  last_name: Orenstein
- first_name: Veronika
  full_name: Sunko, Veronika
  id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
  last_name: Sunko
  orcid: 0000-0003-2724-3523
citation:
  ama: Donoway E, Trevisan TV, Liebman-Peláez A, et al. Multimodal approach reveals
    the symmetry-breaking pathway to the broken helix in EuIn2As2. <i>Physical Review
    X</i>. 2024;14(3). doi:<a href="https://doi.org/10.1103/physrevx.14.031013">10.1103/physrevx.14.031013</a>
  apa: Donoway, E., Trevisan, T. V., Liebman-Peláez, A., Day, R. P., Yamakawa, K.,
    Sun, Y., … Sunko, V. (2024). Multimodal approach reveals the symmetry-breaking
    pathway to the broken helix in EuIn2As2. <i>Physical Review X</i>. American Physical
    Society. <a href="https://doi.org/10.1103/physrevx.14.031013">https://doi.org/10.1103/physrevx.14.031013</a>
  chicago: Donoway, E., T. V. Trevisan, A. Liebman-Peláez, R. P. Day, K. Yamakawa,
    Y. Sun, J. R. Soh, et al. “Multimodal Approach Reveals the Symmetry-Breaking Pathway
    to the Broken Helix in EuIn2As2.” <i>Physical Review X</i>. American Physical
    Society, 2024. <a href="https://doi.org/10.1103/physrevx.14.031013">https://doi.org/10.1103/physrevx.14.031013</a>.
  ieee: E. Donoway <i>et al.</i>, “Multimodal approach reveals the symmetry-breaking
    pathway to the broken helix in EuIn2As2,” <i>Physical Review X</i>, vol. 14, no.
    3. American Physical Society, 2024.
  ista: Donoway E, Trevisan TV, Liebman-Peláez A, Day RP, Yamakawa K, Sun Y, Soh JR,
    Prabhakaran D, Boothroyd AT, Fernandes RM, Analytis JG, Moore JE, Orenstein J,
    Sunko V. 2024. Multimodal approach reveals the symmetry-breaking pathway to the
    broken helix in EuIn2As2. Physical Review X. 14(3), 031013.
  mla: Donoway, E., et al. “Multimodal Approach Reveals the Symmetry-Breaking Pathway
    to the Broken Helix in EuIn2As2.” <i>Physical Review X</i>, vol. 14, no. 3, 031013,
    American Physical Society, 2024, doi:<a href="https://doi.org/10.1103/physrevx.14.031013">10.1103/physrevx.14.031013</a>.
  short: E. Donoway, T.V. Trevisan, A. Liebman-Peláez, R.P. Day, K. Yamakawa, Y. Sun,
    J.R. Soh, D. Prabhakaran, A.T. Boothroyd, R.M. Fernandes, J.G. Analytis, J.E.
    Moore, J. Orenstein, V. Sunko, Physical Review X 14 (2024).
date_created: 2025-06-10T09:17:30Z
date_published: 2024-07-22T00:00:00Z
date_updated: 2025-06-10T13:14:20Z
day: '22'
doi: 10.1103/physrevx.14.031013
extern: '1'
intvolume: '        14'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1103/physrevx.14.031013
month: '07'
oa: 1
oa_version: Published Version
publication: Physical Review X
publication_identifier:
  eissn:
  - 2160-3308
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multimodal approach reveals the symmetry-breaking pathway to the broken helix
  in EuIn2As2
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2024'
...
---
OA_place: repository
_id: '19884'
abstract:
- lang: eng
  text: "This is Marlin, a Mixed Auto-Regressive Linear kernel (and the name of one
    of the planet's fastest fish), an extremely optimized FP16xINT4 matmul kernel
    aimed at LLM inference that can deliver close to ideal (4x) speedups up to batchsizes
    of 16-32 tokens (in contrast to the 1-2 tokens of prior work with comparable speedup).\r\n\r\nAdditionally,
    it includes Sparse-Marlin, an extension of the MARLIN kernels adding support to
    2:4 weight sparsity, achieving 5.3x speedups on NVIDIA GPUs (Ampere/Ada)."
article_processing_charge: No
author:
- first_name: Elias
  full_name: Frantar, Elias
  id: 09a8f98d-ec99-11ea-ae11-c063a7b7fe5f
  last_name: Frantar
- first_name: Roberto
  full_name: Castro, Roberto
  last_name: Castro
- first_name: Jiale
  full_name: Chen, Jiale
  id: 4d0a9064-1ff6-11ee-9fa6-ec046c604785
  last_name: Chen
  orcid: 0000-0001-5337-5875
- first_name: Torsten
  full_name: Hoefler, Torsten
  last_name: Hoefler
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Frantar E, Castro R, Chen J, Hoefler T, Alistarh D-A. MARLIN: Mixed-precision
    auto-regressive parallel inference on Large Language Models. 2024. doi:<a href="https://doi.org/10.5281/ZENODO.14213091">10.5281/ZENODO.14213091</a>'
  apa: 'Frantar, E., Castro, R., Chen, J., Hoefler, T., &#38; Alistarh, D.-A. (2024).
    MARLIN: Mixed-precision auto-regressive parallel inference on Large Language Models.
    Zenodo. <a href="https://doi.org/10.5281/ZENODO.14213091">https://doi.org/10.5281/ZENODO.14213091</a>'
  chicago: 'Frantar, Elias, Roberto Castro, Jiale Chen, Torsten Hoefler, and Dan-Adrian
    Alistarh. “MARLIN: Mixed-Precision Auto-Regressive Parallel Inference on Large
    Language Models.” Zenodo, 2024. <a href="https://doi.org/10.5281/ZENODO.14213091">https://doi.org/10.5281/ZENODO.14213091</a>.'
  ieee: 'E. Frantar, R. Castro, J. Chen, T. Hoefler, and D.-A. Alistarh, “MARLIN:
    Mixed-precision auto-regressive parallel inference on Large Language Models.”
    Zenodo, 2024.'
  ista: 'Frantar E, Castro R, Chen J, Hoefler T, Alistarh D-A. 2024. MARLIN: Mixed-precision
    auto-regressive parallel inference on Large Language Models, Zenodo, <a href="https://doi.org/10.5281/ZENODO.14213091">10.5281/ZENODO.14213091</a>.'
  mla: 'Frantar, Elias, et al. <i>MARLIN: Mixed-Precision Auto-Regressive Parallel
    Inference on Large Language Models</i>. Zenodo, 2024, doi:<a href="https://doi.org/10.5281/ZENODO.14213091">10.5281/ZENODO.14213091</a>.'
  short: E. Frantar, R. Castro, J. Chen, T. Hoefler, D.-A. Alistarh, (2024).
corr_author: '1'
date_created: 2025-06-24T06:09:18Z
date_published: 2024-11-24T00:00:00Z
date_updated: 2025-09-30T13:41:56Z
day: '24'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.5281/ZENODO.14213091
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/ZENODO.14213091
month: '11'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '19877'
    relation: used_for_analysis_in
    status: public
status: public
title: 'MARLIN: Mixed-precision auto-regressive parallel inference on Large Language
  Models'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_type: closed access
_id: '20039'
abstract:
- lang: eng
  text: This Comment presents a high-level protocol for data harmonization within
    large cohorts, in which it postulates four main steps including (1) expert review,
    (2) pre-statistical harmonization, (3) statistical harmonization, and (4) validation.
acknowledgement: Funded by the European Union. Complementary funding was received
  by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding
  guarantee (10041392 and 10038599). Views and opinions expressed are however those
  of the author(s) only and do not necessarily reflect those of the European Union,
  the European Health and Digital Executive Agency (HADEA) or UKRI. The European Union,
  HADEA or UKRI cannot be held responsible for them. This work received support from
  the Chinese Ministry for Science and Technology (MOST), the Horizon 2020-funded
  European Research Council advanced grant ‘STRATIFY’ (695313); the German Research
  Foundation (COPE; 675346; NE 1383/15-1 and BA 2088/7-1 (CoviDrug)), the National
  Natural Science Foundation of China grant 82150710554, the Hector II foundation
  and the German Center for Mental Health (DZPG) (01EE2301A, 01EE2304A, 01EE2301D).
article_processing_charge: No
article_type: comment
author:
- first_name: Maja
  full_name: Neidhart, Maja
  last_name: Neidhart
- first_name: Rikka
  full_name: Kjelkenes, Rikka
  last_name: Kjelkenes
- first_name: Karina
  full_name: Jansone, Karina
  last_name: Jansone
- first_name: Barbora
  full_name: Rehák Bučková, Barbora
  last_name: Rehák Bučková
- first_name: Nathalie
  full_name: Holz, Nathalie
  last_name: Holz
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
- first_name: Gunter
  full_name: Schumann, Gunter
  last_name: Schumann
- first_name: Michael A.
  full_name: Rapp, Michael A.
  last_name: Rapp
- first_name: Tobias
  full_name: Banaschewski, Tobias
  last_name: Banaschewski
- first_name: Emanuel
  full_name: Schwarz, Emanuel
  last_name: Schwarz
- first_name: Andre
  full_name: Marquand, Andre
  last_name: Marquand
- first_name: George
  full_name: Ogoh, George
  last_name: Ogoh
- first_name: Bernd
  full_name: Stahl, Bernd
  last_name: Stahl
- first_name: Allan H.
  full_name: Young, Allan H.
  last_name: Young
- first_name: Sylvane
  full_name: Desrivières, Sylvane
  last_name: Desrivières
- first_name: Nicholas
  full_name: Clinton, Nicholas
  last_name: Clinton
- first_name: Paul
  full_name: Thompson, Paul
  last_name: Thompson
- first_name: Ameli
  full_name: Schwalber, Ameli
  last_name: Schwalber
- first_name: Jingyu
  full_name: Liu, Jingyu
  last_name: Liu
- first_name: Vince
  full_name: Calhoun, Vince
  last_name: Calhoun
- first_name: Xiao
  full_name: Chang, Xiao
  last_name: Chang
- first_name: Yunman
  full_name: Xia, Yunman
  last_name: Xia
- first_name: Yanting
  full_name: Gong, Yanting
  last_name: Gong
- first_name: Tianye
  full_name: Jia, Tianye
  last_name: Jia
- first_name: Paul
  full_name: Renner, Paul
  last_name: Renner
- first_name: Sören
  full_name: Hese, Sören
  last_name: Hese
- first_name: Arantxa
  full_name: Giner, Arantxa
  last_name: Giner
- first_name: Mavi
  full_name: Sanchez, Mavi
  last_name: Sanchez
- first_name: Elena
  full_name: Alvarez, Elena
  last_name: Alvarez
- first_name: Bernhard
  full_name: Spanlang, Bernhard
  last_name: Spanlang
- first_name: Charlie
  full_name: Pearmund, Charlie
  last_name: Pearmund
- first_name: Anastasios Polykarpos
  full_name: Athanasiadis, Anastasios Polykarpos
  last_name: Athanasiadis
- first_name: Lisa
  full_name: Otten, Lisa
  last_name: Otten
- first_name: Séverine
  full_name: Pitel, Séverine
  last_name: Pitel
- first_name: Spase
  full_name: Petkoski, Spase
  last_name: Petkoski
- first_name: Viktor
  full_name: Jirsa, Viktor
  last_name: Jirsa
- first_name: Karen
  full_name: Schmitt, Karen
  last_name: Schmitt
- first_name: Johannes
  full_name: Wilbertz, Johannes
  last_name: Wilbertz
- first_name: Myrto
  full_name: Patraskaki, Myrto
  last_name: Patraskaki
- first_name: Peter
  full_name: Sommer, Peter
  last_name: Sommer
- first_name: Stefanie
  full_name: Heilmann-Heimbach, Stefanie
  last_name: Heilmann-Heimbach
- first_name: Carina M.
  full_name: Mathey, Carina M.
  last_name: Mathey
- first_name: Abigail
  full_name: Miller, Abigail
  last_name: Miller
- first_name: Isabelle
  full_name: Claus, Isabelle
  last_name: Claus
- first_name: Markus M.
  full_name: Nöthen, Markus M.
  last_name: Nöthen
- first_name: Per
  full_name: Hoffmann, Per
  last_name: Hoffmann
- first_name: Andreas J.
  full_name: Forstner, Andreas J.
  last_name: Forstner
- first_name: Alvaro
  full_name: Pastor, Alvaro
  last_name: Pastor
- first_name: Jaime
  full_name: Gallego, Jaime
  last_name: Gallego
- first_name: Francisco Eiroa
  full_name: Orosa, Francisco Eiroa
  last_name: Orosa
- first_name: Guillem Feixas
  full_name: Viapiana, Guillem Feixas
  last_name: Viapiana
- first_name: Mel
  full_name: Slater, Mel
  last_name: Slater
- first_name: Lena
  full_name: Marr, Lena
  id: 4406F586-F248-11E8-B48F-1D18A9856A87
  last_name: Marr
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Sarah Jane
  full_name: Böttger, Sarah Jane
  last_name: Böttger
- first_name: Mira
  full_name: Tschorn, Mira
  last_name: Tschorn
- first_name: Michael
  full_name: Rapp, Michael
  last_name: Rapp
- first_name: Helga
  full_name: Ask, Helga
  last_name: Ask
- first_name: Sara
  full_name: Fernandez, Sara
  last_name: Fernandez
- first_name: Dennis
  full_name: Van Der Meer, Dennis
  last_name: Van Der Meer
- first_name: Lars T.
  full_name: Westlye, Lars T.
  last_name: Westlye
- first_name: Ole A.
  full_name: Andreassen, Ole A.
  last_name: Andreassen
- first_name: Rieke
  full_name: Aden, Rieke
  last_name: Aden
- first_name: Beke
  full_name: Seefried, Beke
  last_name: Seefried
- first_name: Sebastian
  full_name: Siehl, Sebastian
  last_name: Siehl
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Argyris
  full_name: Stringaris, Argyris
  last_name: Stringaris
- first_name: Heike
  full_name: Tost, Heike
  last_name: Tost
- first_name: Andreas
  full_name: Meyer-Lindenberg, Andreas
  last_name: Meyer-Lindenberg
- first_name: Nina
  full_name: Christmann, Nina
  last_name: Christmann
- first_name: Jamie
  full_name: Banks, Jamie
  last_name: Banks
- first_name: Kerstin
  full_name: Schepanski, Kerstin
  last_name: Schepanski
- first_name: Tatjana
  full_name: Schütz, Tatjana
  last_name: Schütz
- first_name: Ulrike Helene
  full_name: Taron, Ulrike Helene
  last_name: Taron
- first_name: Roland
  full_name: Eils, Roland
  last_name: Eils
- first_name: Jean Charles
  full_name: Roy, Jean Charles
  last_name: Roy
- first_name: Tristram A.
  full_name: Lett, Tristram A.
  last_name: Lett
- first_name: Hedi
  full_name: Kebir, Hedi
  last_name: Kebir
- first_name: Elli
  full_name: Polemiti, Elli
  last_name: Polemiti
- first_name: Esther
  full_name: Hitchen, Esther
  last_name: Hitchen
- first_name: Marcel
  full_name: Jentsch, Marcel
  last_name: Jentsch
- first_name: Emin
  full_name: Serin, Emin
  last_name: Serin
- first_name: Antoine
  full_name: Bernas, Antoine
  last_name: Bernas
- first_name: Nilakshi
  full_name: Vaidya, Nilakshi
  last_name: Vaidya
- first_name: Sven
  full_name: Twardziok, Sven
  last_name: Twardziok
- first_name: Markus
  full_name: Ralser, Markus
  last_name: Ralser
- first_name: Andreas
  full_name: Heinz, Andreas
  last_name: Heinz
citation:
  ama: Neidhart M, Kjelkenes R, Jansone K, et al. A protocol for data harmonization
    in large cohorts. <i>Nature Mental Health</i>. 2024;2(10):1134-1137. doi:<a href="https://doi.org/10.1038/s44220-024-00315-0">10.1038/s44220-024-00315-0</a>
  apa: Neidhart, M., Kjelkenes, R., Jansone, K., Rehák Bučková, B., Holz, N., Nees,
    F., … Heinz, A. (2024). A protocol for data harmonization in large cohorts. <i>Nature
    Mental Health</i>. Springer Nature. <a href="https://doi.org/10.1038/s44220-024-00315-0">https://doi.org/10.1038/s44220-024-00315-0</a>
  chicago: Neidhart, Maja, Rikka Kjelkenes, Karina Jansone, Barbora Rehák Bučková,
    Nathalie Holz, Frauke Nees, Henrik Walter, et al. “A Protocol for Data Harmonization
    in Large Cohorts.” <i>Nature Mental Health</i>. Springer Nature, 2024. <a href="https://doi.org/10.1038/s44220-024-00315-0">https://doi.org/10.1038/s44220-024-00315-0</a>.
  ieee: M. Neidhart <i>et al.</i>, “A protocol for data harmonization in large cohorts,”
    <i>Nature Mental Health</i>, vol. 2, no. 10. Springer Nature, pp. 1134–1137, 2024.
  ista: Neidhart M, Kjelkenes R, Jansone K, Rehák Bučková B, Holz N, Nees F, Walter
    H, Schumann G, Rapp MA, Banaschewski T, Schwarz E, Marquand A, Ogoh G, Stahl B,
    Young AH, Desrivières S, Clinton N, Thompson P, Schwalber A, Liu J, Calhoun V,
    Chang X, Xia Y, Gong Y, Jia T, Renner P, Hese S, Giner A, Sanchez M, Alvarez E,
    Spanlang B, Pearmund C, Athanasiadis AP, Otten L, Pitel S, Petkoski S, Jirsa V,
    Schmitt K, Wilbertz J, Patraskaki M, Sommer P, Heilmann-Heimbach S, Mathey CM,
    Miller A, Claus I, Nöthen MM, Hoffmann P, Forstner AJ, Pastor A, Gallego J, Orosa
    FE, Viapiana GF, Slater M, Marr L, Novarino G, Böttger SJ, Tschorn M, Rapp M,
    Ask H, Fernandez S, Van Der Meer D, Westlye LT, Andreassen OA, Aden R, Seefried
    B, Siehl S, Nees F, Stringaris A, Tost H, Meyer-Lindenberg A, Christmann N, Banks
    J, Schepanski K, Schütz T, Taron UH, Eils R, Roy JC, Lett TA, Kebir H, Polemiti
    E, Hitchen E, Jentsch M, Serin E, Bernas A, Vaidya N, Twardziok S, Ralser M, Heinz
    A. 2024. A protocol for data harmonization in large cohorts. Nature Mental Health.
    2(10), 1134–1137.
  mla: Neidhart, Maja, et al. “A Protocol for Data Harmonization in Large Cohorts.”
    <i>Nature Mental Health</i>, vol. 2, no. 10, Springer Nature, 2024, pp. 1134–37,
    doi:<a href="https://doi.org/10.1038/s44220-024-00315-0">10.1038/s44220-024-00315-0</a>.
  short: M. Neidhart, R. Kjelkenes, K. Jansone, B. Rehák Bučková, N. Holz, F. Nees,
    H. Walter, G. Schumann, M.A. Rapp, T. Banaschewski, E. Schwarz, A. Marquand, G.
    Ogoh, B. Stahl, A.H. Young, S. Desrivières, N. Clinton, P. Thompson, A. Schwalber,
    J. Liu, V. Calhoun, X. Chang, Y. Xia, Y. Gong, T. Jia, P. Renner, S. Hese, A.
    Giner, M. Sanchez, E. Alvarez, B. Spanlang, C. Pearmund, A.P. Athanasiadis, L.
    Otten, S. Pitel, S. Petkoski, V. Jirsa, K. Schmitt, J. Wilbertz, M. Patraskaki,
    P. Sommer, S. Heilmann-Heimbach, C.M. Mathey, A. Miller, I. Claus, M.M. Nöthen,
    P. Hoffmann, A.J. Forstner, A. Pastor, J. Gallego, F.E. Orosa, G.F. Viapiana,
    M. Slater, L. Marr, G. Novarino, S.J. Böttger, M. Tschorn, M. Rapp, H. Ask, S.
    Fernandez, D. Van Der Meer, L.T. Westlye, O.A. Andreassen, R. Aden, B. Seefried,
    S. Siehl, F. Nees, A. Stringaris, H. Tost, A. Meyer-Lindenberg, N. Christmann,
    J. Banks, K. Schepanski, T. Schütz, U.H. Taron, R. Eils, J.C. Roy, T.A. Lett,
    H. Kebir, E. Polemiti, E. Hitchen, M. Jentsch, E. Serin, A. Bernas, N. Vaidya,
    S. Twardziok, M. Ralser, A. Heinz, Nature Mental Health 2 (2024) 1134–1137.
date_created: 2025-07-20T22:02:04Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2025-07-22T08:59:10Z
day: '01'
department:
- _id: GaNo
doi: 10.1038/s44220-024-00315-0
intvolume: '         2'
issue: '10'
language:
- iso: eng
month: '10'
oa_version: None
page: 1134-1137
publication: Nature Mental Health
publication_identifier:
  eissn:
  - 2731-6076
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A protocol for data harmonization in large cohorts
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2024'
...
---
OA_place: publisher
OA_type: free access
_id: '20057'
abstract:
- lang: eng
  text: In article number 2305128, Qing Sun, Shang Wang, Yanhong Tian, Andreu Cabot,
    and co-workers report an investigation of the energy-storage mechanism of a layered
    Bi2Te3-based cathode for aqueous zinc-ion batteries (ZIBs). They demonstrate that
    the zinc ion is not inserted into the cathode as previously assumed; in contrast,
    proton charge-storage dominates the process. They also demonstrate the great application
    prospects of aqueous ZIBs in flexible electronics via jet printing technology.
article_number: '2470004'
article_processing_charge: No
author:
- first_name: Guifang
  full_name: Zeng, Guifang
  last_name: Zeng
- first_name: Qing
  full_name: Sun, Qing
  last_name: Sun
- first_name: Sharona
  full_name: Horta, Sharona
  id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc
  last_name: Horta
- first_name: Shang
  full_name: Wang, Shang
  last_name: Wang
- first_name: Xuan
  full_name: Lu, Xuan
  last_name: Lu
- first_name: Chao Yue
  full_name: Zhang, Chao Yue
  last_name: Zhang
- first_name: Jing
  full_name: Li, Jing
  last_name: Li
- first_name: Junshan
  full_name: Li, Junshan
  last_name: Li
- first_name: Lijie
  full_name: Ci, Lijie
  last_name: Ci
- first_name: Yanhong
  full_name: Tian, Yanhong
  last_name: Tian
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: 'Zeng G, Sun Q, Horta S, et al. <i>A Layered Bi2Te3@PPy Cathode for Aqueous
    Zinc‐Ion Batteries: Mechanism and Application in Printed Flexible Batteries</i>.
    Vol 36. Wiley; 2024. doi:<a href="https://doi.org/10.1002/adma.202470004">10.1002/adma.202470004</a>'
  apa: 'Zeng, G., Sun, Q., Horta, S., Wang, S., Lu, X., Zhang, C. Y., … Cabot, A.
    (2024). <i>A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion batteries: Mechanism
    and application in printed flexible batteries</i>. <i>Advanced Materials</i> (Vol.
    36). Wiley. <a href="https://doi.org/10.1002/adma.202470004">https://doi.org/10.1002/adma.202470004</a>'
  chicago: 'Zeng, Guifang, Qing Sun, Sharona Horta, Shang Wang, Xuan Lu, Chao Yue
    Zhang, Jing Li, et al. <i>A Layered Bi2Te3@PPy Cathode for Aqueous Zinc‐Ion Batteries:
    Mechanism and Application in Printed Flexible Batteries</i>. <i>Advanced Materials</i>.
    Vol. 36. Wiley, 2024. <a href="https://doi.org/10.1002/adma.202470004">https://doi.org/10.1002/adma.202470004</a>.'
  ieee: 'G. Zeng <i>et al.</i>, <i>A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion
    batteries: Mechanism and application in printed flexible batteries</i>, vol. 36,
    no. 1. Wiley, 2024.'
  ista: 'Zeng G, Sun Q, Horta S, Wang S, Lu X, Zhang CY, Li J, Li J, Ci L, Tian Y,
    Ibáñez M, Cabot A. 2024. A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion batteries:
    Mechanism and application in printed flexible batteries, Wiley,p.'
  mla: 'Zeng, Guifang, et al. “A Layered Bi2Te3@PPy Cathode for Aqueous Zinc‐Ion Batteries:
    Mechanism and Application in Printed Flexible Batteries.” <i>Advanced Materials</i>,
    vol. 36, no. 1, 2470004, Wiley, 2024, doi:<a href="https://doi.org/10.1002/adma.202470004">10.1002/adma.202470004</a>.'
  short: 'G. Zeng, Q. Sun, S. Horta, S. Wang, X. Lu, C.Y. Zhang, J. Li, J. Li, L.
    Ci, Y. Tian, M. Ibáñez, A. Cabot, A Layered Bi2Te3@PPy Cathode for Aqueous Zinc‐Ion
    Batteries: Mechanism and Application in Printed Flexible Batteries, Wiley, 2024.'
date_created: 2025-07-21T08:53:06Z
date_published: 2024-01-04T00:00:00Z
date_updated: 2025-10-15T07:15:33Z
day: '04'
department:
- _id: MaIb
doi: 10.1002/adma.202470004
intvolume: '        36'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/adma.202470004
month: '01'
oa: 1
oa_version: Published Version
publication: Advanced Materials
publication_identifier:
  eissn:
  - 1521-4095
  issn:
  - 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: 'A layered Bi2Te3@PPy cathode for aqueous Zinc‐Ion batteries: Mechanism and
  application in printed flexible batteries'
type: other_academic_publication
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20060'
abstract:
- lang: spa
  text: "Un fenómeno a menudo asociado con el autismo es un modo atípico de función
    ejecutiva, cuyas manifestaciones incluyen dificultad para iniciar tareas. En algunos
    casos, esto va acompañado de sentimientos de inercia y sensaciones que pueden
    describirse como inquietud y parálisis simultáneas. En consecuencia, la dificultad
    para iniciar las tareas puede dar lugar a la procrastinación, ya sea simplemente
    posponiendo el trabajo en la tarea objetivo o realizando otras tareas no relacionadas
    antes de dedicarse a la tarea objetivo. Curiosamente, sin embargo, también está
    documentado que, una vez iniciada una tarea, los autistas pueden centrarse en
    ella intensamente y durante periodos prolongados de tiempo, especialmente cuando
    les resulta interesante.&#x0D;\r\nEste trabajo utiliza el procesamiento predictivo
    y la inferencia activa para modelar la relación entre la función ejecutiva, la
    procrastinación y la hiperfocalización en el autismo. Este modelo integra las
    causas conocidas y propuestas de los déficits en la función ejecutiva y el papel
    que desempeña el interés en la regulación de la atención y la motivación. El modelo
    propone que la procrastinación es el resultado de procesos diferenciales de minimización
    de errores de predicción, como la ponderación de estímulos sensoriales. Se discuten
    los vínculos con modelos propuestos previamente, como la coherencia central débil
    (CCC), y la teoría de los priores altos e inflexibles de los errores de predicción
    en el autismo (HIPPEA)."
- lang: eng
  text: A  phenomenon  often  associated  with  autism  is  an  atypical  mode  of  executive  function,
    manifestations  of  which  include  difficulty  in  initiating  tasks.  In  some  cases,  this
    is accompanied  by  feelings  of  inertia  and  sensations  that  can  be  described  as  simultaneous
    restlessness  and  paralysis.  Consequently,  difficulty  in  getting  started  on  tasks  can  result  in
    procrastination,  either  by  simply  postponing  working  on  the  target  task  or  by  performing
    other  unrelated  tasks  before  engaging  in  the  target  task.  Interestingly,  however,  it  is  also
    documented  that  once  a  task  has  been  started,  autistic  persons  may  focus  on  it  intensely
    and for prolonged periods of time, especially when it is interesting to them.This  paper  uses  predictive  processing  and  active  inference  to  model  therelationship
    between  executive   function,   procrastination,  and   hyperfocus   in  autism.   This   model
    integrates  the  known  and  proposed  causes  of  deficits  in  executive  function  and  the  role
    played  by  interest  in  attention  regulation  and  motivation.  The  model  proposes  that
    procrastination  is  the  outcome  of  differential  prediction-error  minimizing  processes,  such
    as weighting of sensory stimuli. Links to previously proposed models such as weak
    central coherence  (WCC),  and  the  theory  of  high,  inflexible  priors  of  prediction  errors  in  autism
    (HIPPEA) are discussed
acknowledgement: Sidney Carls-Diamante was supported by the Federal Ministry of Education
  and Research (BMBF) and the Baden-Württemberg Ministry of Science as part of the
  Excellence Strategy of the German Federal and State Governments. Alice Laciny was
  supported by the 2021 UNESCO L’Oréal grant for women in science, awarded for the
  project “Neurodiversity and anthropomorphism in social insect research”.
article_processing_charge: Yes
article_type: original
author:
- first_name: Sidney
  full_name: Carls-Diamante, Sidney
  last_name: Carls-Diamante
- first_name: Alice
  full_name: Laciny, Alice
  id: accace3f-3f77-11eb-b1df-f1221b04cb95
  last_name: Laciny
  orcid: 0000-0002-5485-1391
citation:
  ama: 'Carls-Diamante S, Laciny A. Stuck in uncertainty: A predictive processing/
    active inference account of procrastination-like behaviour in autism. <i>Lógoi
    Revista de Filosofía</i>. 2024;(45):88-114. doi:<a href="https://doi.org/10.62876/lr.vi45.6481">10.62876/lr.vi45.6481</a>'
  apa: 'Carls-Diamante, S., &#38; Laciny, A. (2024). Stuck in uncertainty: A predictive
    processing/ active inference account of procrastination-like behaviour in autism.
    <i>Lógoi. Revista de Filosofía</i>. Universidad Católica Andrés Bello. <a href="https://doi.org/10.62876/lr.vi45.6481">https://doi.org/10.62876/lr.vi45.6481</a>'
  chicago: 'Carls-Diamante, Sidney, and Alice Laciny. “Stuck in Uncertainty: A Predictive
    Processing/ Active Inference Account of Procrastination-like Behaviour in Autism.”
    <i>Lógoi. Revista de Filosofía</i>. Universidad Católica Andrés Bello, 2024. <a
    href="https://doi.org/10.62876/lr.vi45.6481">https://doi.org/10.62876/lr.vi45.6481</a>.'
  ieee: 'S. Carls-Diamante and A. Laciny, “Stuck in uncertainty: A predictive processing/
    active inference account of procrastination-like behaviour in autism,” <i>Lógoi.
    Revista de Filosofía</i>, no. 45. Universidad Católica Andrés Bello, pp. 88–114,
    2024.'
  ista: 'Carls-Diamante S, Laciny A. 2024. Stuck in uncertainty: A predictive processing/
    active inference account of procrastination-like behaviour in autism. Lógoi. Revista
    de Filosofía. (45), 88–114.'
  mla: 'Carls-Diamante, Sidney, and Alice Laciny. “Stuck in Uncertainty: A Predictive
    Processing/ Active Inference Account of Procrastination-like Behaviour in Autism.”
    <i>Lógoi. Revista de Filosofía</i>, no. 45, Universidad Católica Andrés Bello,
    2024, pp. 88–114, doi:<a href="https://doi.org/10.62876/lr.vi45.6481">10.62876/lr.vi45.6481</a>.'
  short: S. Carls-Diamante, A. Laciny, Lógoi. Revista de Filosofía (2024) 88–114.
corr_author: '1'
date_created: 2025-07-21T10:35:39Z
date_published: 2024-03-19T00:00:00Z
date_updated: 2025-09-09T08:51:00Z
day: '19'
ddc:
- '570'
doi: 10.62876/lr.vi45.6481
file:
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  checksum: 04c950f26ad68455c3a303c87ccf2349
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  creator: dernst
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  date_updated: 2025-09-09T08:48:53Z
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  file_name: 2025_Logoi_CarlsDiamante.pdf
  file_size: 354124
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  success: 1
file_date_updated: 2025-09-09T08:48:53Z
has_accepted_license: '1'
issue: '45'
language:
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license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '03'
oa: 1
oa_version: Published Version
page: 88-114
publication: Lógoi. Revista de Filosofía
publication_identifier:
  eissn:
  - 1316-693X
  issn:
  - 2790-5144
publication_status: published
publisher: Universidad Católica Andrés Bello
quality_controlled: '1'
status: public
title: 'Stuck in uncertainty: A predictive processing/ active inference account of
  procrastination-like behaviour in autism'
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
_id: '20121'
abstract:
- lang: eng
  text: PyDaddy is an open source package which is a key contribution of the manuscript
    Nabeel et al, arXiv:2205.02645. The basic scientific premise for this package
    is to discover the nature of stochasticity in ecological time series datasets.
    It is well known that the stochasticity can affect the dynamics of ecological
    systems in counter-intuitive ways. Without understanding the equations (typically,
    in the form of stochastic differential equations or SDEs, in short) that govern
    the dynamics of populations or ecosystems, it's challenging to determine the impact
    of randomness on real datasets. In this manuscript and accompanying package, we
    introduce a methodology for discovering equations (SDEs) that transforms time
    series data of state variables into stochastic differential equations. This approach
    merges traditional stochastic calculus with modern equation-discovery techniques.
    We showcase the generality of our method through various applications and discuss
    its limitations and potential pitfalls, offering diagnostic measures to address
    these challenges.
acknowledgement: This study was partially funded by Science and Engineering Research
  Board, Department of Science and Technology, Government of India to Vishwesha Guttal.
article_processing_charge: No
author:
- first_name: Arshed
  full_name: Nabeel, Arshed
  last_name: Nabeel
- first_name: Ashwin
  full_name: Karichannavar, Ashwin
  last_name: Karichannavar
- first_name: Shuaib
  full_name: Palathingal, Shuaib
  last_name: Palathingal
- first_name: Jitesh
  full_name: Jhawar, Jitesh
  last_name: Jhawar
- first_name: David
  full_name: Brückner, David
  id: e1e86031-6537-11eb-953a-f7ab92be508d
  last_name: Brückner
  orcid: 0000-0001-7205-2975
- first_name: Masila
  full_name: Danny Raj, Masila
  last_name: Danny Raj
- first_name: Vishwesha
  full_name: Guttal, Vishwesha
  last_name: Guttal
citation:
  ama: 'Nabeel A, Karichannavar A, Palathingal S, et al. PyDaddy: A Python Package
    for Discovering SDEs from Time Series Data. 2024. doi:<a href="https://doi.org/10.5281/ZENODO.7137151">10.5281/ZENODO.7137151</a>'
  apa: 'Nabeel, A., Karichannavar, A., Palathingal, S., Jhawar, J., Brückner, D.,
    Danny Raj, M., &#38; Guttal, V. (2024). PyDaddy: A Python Package for Discovering
    SDEs from Time Series Data. Zenodo. <a href="https://doi.org/10.5281/ZENODO.7137151">https://doi.org/10.5281/ZENODO.7137151</a>'
  chicago: 'Nabeel, Arshed, Ashwin Karichannavar, Shuaib Palathingal, Jitesh Jhawar,
    David Brückner, Masila Danny Raj, and Vishwesha Guttal. “PyDaddy: A Python Package
    for Discovering SDEs from Time Series Data.” Zenodo, 2024. <a href="https://doi.org/10.5281/ZENODO.7137151">https://doi.org/10.5281/ZENODO.7137151</a>.'
  ieee: 'A. Nabeel <i>et al.</i>, “PyDaddy: A Python Package for Discovering SDEs
    from Time Series Data.” Zenodo, 2024.'
  ista: 'Nabeel A, Karichannavar A, Palathingal S, Jhawar J, Brückner D, Danny Raj
    M, Guttal V. 2024. PyDaddy: A Python Package for Discovering SDEs from Time Series
    Data, Zenodo, <a href="https://doi.org/10.5281/ZENODO.7137151">10.5281/ZENODO.7137151</a>.'
  mla: 'Nabeel, Arshed, et al. <i>PyDaddy: A Python Package for Discovering SDEs from
    Time Series Data</i>. Zenodo, 2024, doi:<a href="https://doi.org/10.5281/ZENODO.7137151">10.5281/ZENODO.7137151</a>.'
  short: A. Nabeel, A. Karichannavar, S. Palathingal, J. Jhawar, D. Brückner, M. Danny
    Raj, V. Guttal, (2024).
date_created: 2025-08-05T06:49:59Z
date_published: 2024-09-18T00:00:00Z
date_updated: 2025-09-30T14:14:42Z
day: '18'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.5281/ZENODO.7137151
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.7137151
month: '09'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '20056'
    relation: used_for_analysis_in
    status: public
status: public
title: 'PyDaddy: A Python Package for Discovering SDEs from Time Series Data'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_type: closed access
_id: '20156'
abstract:
- lang: eng
  text: Integrative analyses that incorporate different levels of ‘-omics’ data represent
    a powerful tool for deciphering the biological mechanisms that underlie environmental
    influences on mental health and disease. This Comment highlights various aspects
    of such multi-omics approaches, using the example of the EU-funded environMENTAL
    project.
acknowledgement: 'This work was supported by the Horizon 2021 (grant 101057429) and
  UK Research and Innovation (grants 10038599 and 10041392)-funded project environMENTAL.
  Other funding included the Medical Research Council and Medical Research Foundation
  (MR/R00465X/, MRF-058-0004-RG-DESRI, ‘ESTRA’- Neurobiological underpinning of eating
  disorders: integrative biopsychosocial longitudinal analyses in adolescents; and
  MR/S020306/1, MRF-058-0009-RG-DESR-C0759 ‘ESTRA’-Establishing causal relationships
  between biopsychosocial predictors and correlates of eating disorders and their
  mediation by neural pathways), the EU-funded FP6 Integrated Project IMAGEN (reinforcement-related
  behavior in normal brain function and psychopathology; LSHM-CT- 2007-037286), the
  Horizon 2020-funded European Research Council advanced grant for STRATIFY (brain
  network-based stratification of reinforcement-related disorders; 695313) and the
  National Institute for Health Research (NIHR) Biomedical Research Centre at South
  London and Maudsley NHS Foundation Trust and King’s College London. This paper represents
  independent research, partly funded by the NIHR Maudsley Biomedical Research Centre
  at South London and Maudsley NHS Foundation Trust and King’s College London. The
  views expressed are those of the authors and not necessarily those of the NIHR or
  the Department of Health and Social Care. The authors thank C. Schmäl for proofreading
  the manuscript.'
article_processing_charge: No
article_type: comment
author:
- first_name: Sylvane
  full_name: Desrivières, Sylvane
  last_name: Desrivières
- first_name: Abigail
  full_name: Miller, Abigail
  last_name: Miller
- first_name: Carina M.
  full_name: Mathey, Carina M.
  last_name: Mathey
- first_name: Xinyang
  full_name: Yu, Xinyang
  last_name: Yu
- first_name: Di
  full_name: Chen, Di
  last_name: Chen
- first_name: Kofoworola
  full_name: Agunbiade, Kofoworola
  last_name: Agunbiade
- first_name: Stefanie
  full_name: Heilmann-Heimbach, Stefanie
  last_name: Heilmann-Heimbach
- first_name: Andreas J.
  full_name: Forstner, Andreas J.
  last_name: Forstner
- first_name: Gunter
  full_name: Schumann, Gunter
  last_name: Schumann
- first_name: Per
  full_name: Hoffmann, Per
  last_name: Hoffmann
- first_name: Markus M.
  full_name: Nöthen, Markus M.
  last_name: Nöthen
- first_name: George
  full_name: Ogoh, George
  last_name: Ogoh
- first_name: Bernd
  full_name: Stahl, Bernd
  last_name: Stahl
- first_name: Allan H.
  full_name: Young, Allan H.
  last_name: Young
- first_name: Nicholas
  full_name: Clinton, Nicholas
  last_name: Clinton
- first_name: Paul
  full_name: Thompson, Paul
  last_name: Thompson
- first_name: Ameli
  full_name: Schwalber, Ameli
  last_name: Schwalber
- first_name: Jingyu
  full_name: Liu, Jingyu
  last_name: Liu
- first_name: Vince
  full_name: Calhoun, Vince
  last_name: Calhoun
- first_name: Xiao
  full_name: Chang, Xiao
  last_name: Chang
- first_name: Yunman
  full_name: Xia, Yunman
  last_name: Xia
- first_name: Yanting
  full_name: Gong, Yanting
  last_name: Gong
- first_name: Tianye
  full_name: Jia, Tianye
  last_name: Jia
- first_name: Paul
  full_name: Renner, Paul
  last_name: Renner
- first_name: Sören
  full_name: Hese, Sören
  last_name: Hese
- first_name: Arantxa
  full_name: Giner, Arantxa
  last_name: Giner
- first_name: Mavi
  full_name: Sanchez, Mavi
  last_name: Sanchez
- first_name: Elena
  full_name: Alvarez, Elena
  last_name: Alvarez
- first_name: Bernhard
  full_name: Spanlang, Bernhard
  last_name: Spanlang
- first_name: Charlie
  full_name: Pearmund, Charlie
  last_name: Pearmund
- first_name: Anastasios Polykarpos
  full_name: Athanasiadis, Anastasios Polykarpos
  last_name: Athanasiadis
- first_name: Lisa
  full_name: Otten, Lisa
  last_name: Otten
- first_name: Séverine
  full_name: Pitel, Séverine
  last_name: Pitel
- first_name: Spase
  full_name: Petkoski, Spase
  last_name: Petkoski
- first_name: Viktor
  full_name: Jirsa, Viktor
  last_name: Jirsa
- first_name: Karen
  full_name: Schmitt, Karen
  last_name: Schmitt
- first_name: Johannes
  full_name: Wilbertz, Johannes
  last_name: Wilbertz
- first_name: Myrto
  full_name: Patraskaki, Myrto
  last_name: Patraskaki
- first_name: Peter
  full_name: Sommer, Peter
  last_name: Sommer
- first_name: Isabelle
  full_name: Claus, Isabelle
  last_name: Claus
- first_name: Alvaro
  full_name: Pastor, Alvaro
  last_name: Pastor
- first_name: Jaime
  full_name: Gallego, Jaime
  last_name: Gallego
- first_name: Francisco Eiroa
  full_name: Orosa, Francisco Eiroa
  last_name: Orosa
- first_name: Guillem Feixas
  full_name: Viapiana, Guillem Feixas
  last_name: Viapiana
- first_name: Mel
  full_name: Slater, Mel
  last_name: Slater
- first_name: Lena
  full_name: Marr, Lena
  id: 4406F586-F248-11E8-B48F-1D18A9856A87
  last_name: Marr
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Andre
  full_name: Marquand, Andre
  last_name: Marquand
- first_name: Sarah Jane
  full_name: Böttger, Sarah Jane
  last_name: Böttger
- first_name: Mira
  full_name: Tschorn, Mira
  last_name: Tschorn
- first_name: Michael
  full_name: Rapp, Michael
  last_name: Rapp
- first_name: Helga
  full_name: Ask, Helga
  last_name: Ask
- first_name: Rikka
  full_name: Kjelkenes, Rikka
  last_name: Kjelkenes
- first_name: Sara
  full_name: Fernandez, Sara
  last_name: Fernandez
- first_name: Dennis
  full_name: Van Der Meer, Dennis
  last_name: Van Der Meer
- first_name: Lars T.
  full_name: Westlye, Lars T.
  last_name: Westlye
- first_name: Ole A.
  full_name: Andreassen, Ole A.
  last_name: Andreassen
- first_name: Rieke
  full_name: Aden, Rieke
  last_name: Aden
- first_name: Beke
  full_name: Seefried, Beke
  last_name: Seefried
- first_name: Sebastian
  full_name: Siehl, Sebastian
  last_name: Siehl
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Maja
  full_name: Neidhart, Maja
  last_name: Neidhart
- first_name: Argyris
  full_name: Stringaris, Argyris
  last_name: Stringaris
- first_name: Emanuel
  full_name: Schwarz, Emanuel
  last_name: Schwarz
- first_name: Nathalie
  full_name: Holz, Nathalie
  last_name: Holz
- first_name: Heike
  full_name: Tost, Heike
  last_name: Tost
- first_name: Andreas
  full_name: Meyer-Lindenberg, Andreas
  last_name: Meyer-Lindenberg
- first_name: Nina
  full_name: Christmann, Nina
  last_name: Christmann
- first_name: Karina
  full_name: Jansone, Karina
  last_name: Jansone
- first_name: Tobias
  full_name: Banaschewski, Tobias
  last_name: Banaschewski
- first_name: Jamie
  full_name: Banks, Jamie
  last_name: Banks
- first_name: Kerstin
  full_name: Schepanski, Kerstin
  last_name: Schepanski
- first_name: Tatjana
  full_name: Schütz, Tatjana
  last_name: Schütz
- first_name: Ulrike Helene
  full_name: Taron, Ulrike Helene
  last_name: Taron
- first_name: Roland
  full_name: Eils, Roland
  last_name: Eils
- first_name: Jean Charles
  full_name: Roy, Jean Charles
  last_name: Roy
- first_name: Tristram A.
  full_name: Lett, Tristram A.
  last_name: Lett
- first_name: Hedi
  full_name: Kebir, Hedi
  last_name: Kebir
- first_name: Elli
  full_name: Polemiti, Elli
  last_name: Polemiti
- first_name: Esther
  full_name: Hitchen, Esther
  last_name: Hitchen
- first_name: Marcel
  full_name: Jentsch, Marcel
  last_name: Jentsch
- first_name: Emin
  full_name: Serin, Emin
  last_name: Serin
- first_name: Antoine
  full_name: Bernas, Antoine
  last_name: Bernas
- first_name: Nilakshi
  full_name: Vaidya, Nilakshi
  last_name: Vaidya
- first_name: Sven
  full_name: Twardziok, Sven
  last_name: Twardziok
- first_name: Markus
  full_name: Ralser, Markus
  last_name: Ralser
- first_name: Andreas
  full_name: Heinz, Andreas
  last_name: Heinz
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
citation:
  ama: Desrivières S, Miller A, Mathey CM, et al. Multi-omics analyses of the environMENTAL
    project provide insights into mental health and disease. <i>Nature Mental Health</i>.
    2024;2(10):1131-1133. doi:<a href="https://doi.org/10.1038/s44220-024-00317-y">10.1038/s44220-024-00317-y</a>
  apa: Desrivières, S., Miller, A., Mathey, C. M., Yu, X., Chen, D., Agunbiade, K.,
    … Walter, H. (2024). Multi-omics analyses of the environMENTAL project provide
    insights into mental health and disease. <i>Nature Mental Health</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s44220-024-00317-y">https://doi.org/10.1038/s44220-024-00317-y</a>
  chicago: Desrivières, Sylvane, Abigail Miller, Carina M. Mathey, Xinyang Yu, Di
    Chen, Kofoworola Agunbiade, Stefanie Heilmann-Heimbach, et al. “Multi-Omics Analyses
    of the EnvironMENTAL Project Provide Insights into Mental Health and Disease.”
    <i>Nature Mental Health</i>. Springer Nature, 2024. <a href="https://doi.org/10.1038/s44220-024-00317-y">https://doi.org/10.1038/s44220-024-00317-y</a>.
  ieee: S. Desrivières <i>et al.</i>, “Multi-omics analyses of the environMENTAL project
    provide insights into mental health and disease,” <i>Nature Mental Health</i>,
    vol. 2, no. 10. Springer Nature, pp. 1131–1133, 2024.
  ista: Desrivières S, Miller A, Mathey CM, Yu X, Chen D, Agunbiade K, Heilmann-Heimbach
    S, Forstner AJ, Schumann G, Hoffmann P, Nöthen MM, Ogoh G, Stahl B, Young AH,
    Clinton N, Thompson P, Schwalber A, Liu J, Calhoun V, Chang X, Xia Y, Gong Y,
    Jia T, Renner P, Hese S, Giner A, Sanchez M, Alvarez E, Spanlang B, Pearmund C,
    Athanasiadis AP, Otten L, Pitel S, Petkoski S, Jirsa V, Schmitt K, Wilbertz J,
    Patraskaki M, Sommer P, Claus I, Pastor A, Gallego J, Orosa FE, Viapiana GF, Slater
    M, Marr L, Novarino G, Marquand A, Böttger SJ, Tschorn M, Rapp M, Ask H, Kjelkenes
    R, Fernandez S, Van Der Meer D, Westlye LT, Andreassen OA, Aden R, Seefried B,
    Siehl S, Nees F, Neidhart M, Stringaris A, Schwarz E, Holz N, Tost H, Meyer-Lindenberg
    A, Christmann N, Jansone K, Banaschewski T, Banks J, Schepanski K, Schütz T, Taron
    UH, Eils R, Roy JC, Lett TA, Kebir H, Polemiti E, Hitchen E, Jentsch M, Serin
    E, Bernas A, Vaidya N, Twardziok S, Ralser M, Heinz A, Walter H. 2024. Multi-omics
    analyses of the environMENTAL project provide insights into mental health and
    disease. Nature Mental Health. 2(10), 1131–1133.
  mla: Desrivières, Sylvane, et al. “Multi-Omics Analyses of the EnvironMENTAL Project
    Provide Insights into Mental Health and Disease.” <i>Nature Mental Health</i>,
    vol. 2, no. 10, Springer Nature, 2024, pp. 1131–33, doi:<a href="https://doi.org/10.1038/s44220-024-00317-y">10.1038/s44220-024-00317-y</a>.
  short: S. Desrivières, A. Miller, C.M. Mathey, X. Yu, D. Chen, K. Agunbiade, S.
    Heilmann-Heimbach, A.J. Forstner, G. Schumann, P. Hoffmann, M.M. Nöthen, G. Ogoh,
    B. Stahl, A.H. Young, N. Clinton, P. Thompson, A. Schwalber, J. Liu, V. Calhoun,
    X. Chang, Y. Xia, Y. Gong, T. Jia, P. Renner, S. Hese, A. Giner, M. Sanchez, E.
    Alvarez, B. Spanlang, C. Pearmund, A.P. Athanasiadis, L. Otten, S. Pitel, S. Petkoski,
    V. Jirsa, K. Schmitt, J. Wilbertz, M. Patraskaki, P. Sommer, I. Claus, A. Pastor,
    J. Gallego, F.E. Orosa, G.F. Viapiana, M. Slater, L. Marr, G. Novarino, A. Marquand,
    S.J. Böttger, M. Tschorn, M. Rapp, H. Ask, R. Kjelkenes, S. Fernandez, D. Van
    Der Meer, L.T. Westlye, O.A. Andreassen, R. Aden, B. Seefried, S. Siehl, F. Nees,
    M. Neidhart, A. Stringaris, E. Schwarz, N. Holz, H. Tost, A. Meyer-Lindenberg,
    N. Christmann, K. Jansone, T. Banaschewski, J. Banks, K. Schepanski, T. Schütz,
    U.H. Taron, R. Eils, J.C. Roy, T.A. Lett, H. Kebir, E. Polemiti, E. Hitchen, M.
    Jentsch, E. Serin, A. Bernas, N. Vaidya, S. Twardziok, M. Ralser, A. Heinz, H.
    Walter, Nature Mental Health 2 (2024) 1131–1133.
date_created: 2025-08-10T22:01:30Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2025-08-11T06:44:03Z
day: '01'
department:
- _id: GaNo
doi: 10.1038/s44220-024-00317-y
intvolume: '         2'
issue: '10'
language:
- iso: eng
month: '10'
oa_version: None
page: 1131-1133
publication: Nature Mental Health
publication_identifier:
  eissn:
  - 2731-6076
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multi-omics analyses of the environMENTAL project provide insights into mental
  health and disease
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2024'
...
---
OA_type: closed access
_id: '20157'
abstract:
- lang: eng
  text: The focus of much of contemporary research ethics is on compliance with established
    protocols. However, large data-driven neuroscience research raises new ethical
    concerns that have no agreed-upon solution. Here we reflect on these challenges
    and propose better integration of public and patient involvement in this evolving
    landscape.
acknowledgement: Funded provided by the European Union. Complementary funding was
  received by UK Research and Innovation (UKRI) under the UK government’s Horizon
  Europe funding guarantee (10131373and 10038599) and Ministry of Science and Technology
  of China (MOST) National Key Project of ‘Inter-governmental International Scientific
  and Technological Innovation Cooperation’ (2023YFE0199700).
article_number: 1128-1130
article_processing_charge: No
article_type: comment
author:
- first_name: Bernd
  full_name: Stahl, Bernd
  last_name: Stahl
- first_name: George
  full_name: Ogoh, George
  last_name: Ogoh
- first_name: Gunter
  full_name: Schumann, Gunter
  last_name: Schumann
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
- first_name: Bernd
  full_name: Stahl, Bernd
  last_name: Stahl
- first_name: Allan H.
  full_name: Young, Allan H.
  last_name: Young
- first_name: Sylvane
  full_name: Desrivières, Sylvane
  last_name: Desrivières
- first_name: Nicholas
  full_name: Clinton, Nicholas
  last_name: Clinton
- first_name: Paul
  full_name: Thompson, Paul
  last_name: Thompson
- first_name: Ameli
  full_name: Schwalber, Ameli
  last_name: Schwalber
- first_name: Jingyu
  full_name: Liu, Jingyu
  last_name: Liu
- first_name: Vince
  full_name: Calhoun, Vince
  last_name: Calhoun
- first_name: Xiao
  full_name: Chang, Xiao
  last_name: Chang
- first_name: Yunman
  full_name: Xia, Yunman
  last_name: Xia
- first_name: Yanting
  full_name: Gong, Yanting
  last_name: Gong
- first_name: Tianye
  full_name: Jia, Tianye
  last_name: Jia
- first_name: Paul
  full_name: Renner, Paul
  last_name: Renner
- first_name: Sören
  full_name: Hese, Sören
  last_name: Hese
- first_name: Arantxa
  full_name: Giner, Arantxa
  last_name: Giner
- first_name: Mavi
  full_name: Sanchez, Mavi
  last_name: Sanchez
- first_name: Elena
  full_name: Alvarez, Elena
  last_name: Alvarez
- first_name: Bernhard
  full_name: Spanlang, Bernhard
  last_name: Spanlang
- first_name: Charlie
  full_name: Pearmund, Charlie
  last_name: Pearmund
- first_name: Anastasios Polykarpos
  full_name: Athanasiadis, Anastasios Polykarpos
  last_name: Athanasiadis
- first_name: Lisa
  full_name: Otten, Lisa
  last_name: Otten
- first_name: Séverine
  full_name: Pitel, Séverine
  last_name: Pitel
- first_name: Spase
  full_name: Petkoski, Spase
  last_name: Petkoski
- first_name: Viktor
  full_name: Jirsa, Viktor
  last_name: Jirsa
- first_name: Karen
  full_name: Schmitt, Karen
  last_name: Schmitt
- first_name: Johannes
  full_name: Wilbertz, Johannes
  last_name: Wilbertz
- first_name: Myrto
  full_name: Patraskaki, Myrto
  last_name: Patraskaki
- first_name: Peter
  full_name: Sommer, Peter
  last_name: Sommer
- first_name: Stefanie
  full_name: Heilmann-Heimbach, Stefanie
  last_name: Heilmann-Heimbach
- first_name: Carina M.
  full_name: Mathey, Carina M.
  last_name: Mathey
- first_name: Abigail
  full_name: Miller, Abigail
  last_name: Miller
- first_name: Isabelle
  full_name: Claus, Isabelle
  last_name: Claus
- first_name: Markus M.
  full_name: Nöthen, Markus M.
  last_name: Nöthen
- first_name: Per
  full_name: Hoffmann, Per
  last_name: Hoffmann
- first_name: Andreas J.
  full_name: Forstner, Andreas J.
  last_name: Forstner
- first_name: Alvaro
  full_name: Pastor, Alvaro
  last_name: Pastor
- first_name: Jaime
  full_name: Gallego, Jaime
  last_name: Gallego
- first_name: Francisco Eiroa
  full_name: Orosa, Francisco Eiroa
  last_name: Orosa
- first_name: Guillem Feixas
  full_name: Viapiana, Guillem Feixas
  last_name: Viapiana
- first_name: Mel
  full_name: Slater, Mel
  last_name: Slater
- first_name: Lena
  full_name: Marr, Lena
  id: 4406F586-F248-11E8-B48F-1D18A9856A87
  last_name: Marr
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Andre
  full_name: Marquand, Andre
  last_name: Marquand
- first_name: Sarah Jane
  full_name: Böttger, Sarah Jane
  last_name: Böttger
- first_name: Mira
  full_name: Tschorn, Mira
  last_name: Tschorn
- first_name: Michael
  full_name: Rapp, Michael
  last_name: Rapp
- first_name: Helga
  full_name: Ask, Helga
  last_name: Ask
- first_name: Rikka
  full_name: Kjelkenes, Rikka
  last_name: Kjelkenes
- first_name: Sara
  full_name: Fernandez, Sara
  last_name: Fernandez
- first_name: Dennis
  full_name: Van Der Meer, Dennis
  last_name: Van Der Meer
- first_name: Lars T.
  full_name: Westlye, Lars T.
  last_name: Westlye
- first_name: Ole A.
  full_name: Andreassen, Ole A.
  last_name: Andreassen
- first_name: Rieke
  full_name: Aden, Rieke
  last_name: Aden
- first_name: Beke
  full_name: Seefried, Beke
  last_name: Seefried
- first_name: Sebastian
  full_name: Siehl, Sebastian
  last_name: Siehl
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Maja
  full_name: Neidhart, Maja
  last_name: Neidhart
- first_name: Argyris
  full_name: Stringaris, Argyris
  last_name: Stringaris
- first_name: Emanuel
  full_name: Schwarz, Emanuel
  last_name: Schwarz
- first_name: Nathalie
  full_name: Holz, Nathalie
  last_name: Holz
- first_name: Heike
  full_name: Tost, Heike
  last_name: Tost
- first_name: Andreas
  full_name: Meyer-Lindenberg, Andreas
  last_name: Meyer-Lindenberg
- first_name: Nina
  full_name: Christmann, Nina
  last_name: Christmann
- first_name: Karina
  full_name: Jansone, Karina
  last_name: Jansone
- first_name: Tobias
  full_name: Banaschewski, Tobias
  last_name: Banaschewski
- first_name: Jamie
  full_name: Banks, Jamie
  last_name: Banks
- first_name: Kerstin
  full_name: Schepanski, Kerstin
  last_name: Schepanski
- first_name: Tatjana
  full_name: Schütz, Tatjana
  last_name: Schütz
- first_name: Ulrike Helene
  full_name: Taron, Ulrike Helene
  last_name: Taron
- first_name: Roland
  full_name: Eils, Roland
  last_name: Eils
- first_name: Jean Charles
  full_name: Roy, Jean Charles
  last_name: Roy
- first_name: Tristram A.
  full_name: Lett, Tristram A.
  last_name: Lett
- first_name: Hedi
  full_name: Kebir, Hedi
  last_name: Kebir
- first_name: Elli
  full_name: Polemiti, Elli
  last_name: Polemiti
- first_name: Esther
  full_name: Hitchen, Esther
  last_name: Hitchen
- first_name: Marcel
  full_name: Jentsch, Marcel
  last_name: Jentsch
- first_name: Emin
  full_name: Serin, Emin
  last_name: Serin
- first_name: Antoine
  full_name: Bernas, Antoine
  last_name: Bernas
- first_name: Nilakshi
  full_name: Vaidya, Nilakshi
  last_name: Vaidya
- first_name: Sven
  full_name: Twardziok, Sven
  last_name: Twardziok
- first_name: Markus
  full_name: Ralser, Markus
  last_name: Ralser
- first_name: Andreas
  full_name: Heinz, Andreas
  last_name: Heinz
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
citation:
  ama: Stahl B, Ogoh G, Schumann G, et al. Rethinking ethics in interdisciplinary
    and big data-driven neuroscience projects. <i>Nature Mental Health</i>. 2024;2(10).
    doi:<a href="https://doi.org/10.1038/s44220-024-00320-3">10.1038/s44220-024-00320-3</a>
  apa: Stahl, B., Ogoh, G., Schumann, G., Walter, H., Stahl, B., Young, A. H., … Walter,
    H. (2024). Rethinking ethics in interdisciplinary and big data-driven neuroscience
    projects. <i>Nature Mental Health</i>. Springer Nature. <a href="https://doi.org/10.1038/s44220-024-00320-3">https://doi.org/10.1038/s44220-024-00320-3</a>
  chicago: Stahl, Bernd, George Ogoh, Gunter Schumann, Henrik Walter, Bernd Stahl,
    Allan H. Young, Sylvane Desrivières, et al. “Rethinking Ethics in Interdisciplinary
    and Big Data-Driven Neuroscience Projects.” <i>Nature Mental Health</i>. Springer
    Nature, 2024. <a href="https://doi.org/10.1038/s44220-024-00320-3">https://doi.org/10.1038/s44220-024-00320-3</a>.
  ieee: B. Stahl <i>et al.</i>, “Rethinking ethics in interdisciplinary and big data-driven
    neuroscience projects,” <i>Nature Mental Health</i>, vol. 2, no. 10. Springer
    Nature, 2024.
  ista: Stahl B, Ogoh G, Schumann G, Walter H, Stahl B, Young AH, Desrivières S, Clinton
    N, Thompson P, Schwalber A, Liu J, Calhoun V, Chang X, Xia Y, Gong Y, Jia T, Renner
    P, Hese S, Giner A, Sanchez M, Alvarez E, Spanlang B, Pearmund C, Athanasiadis
    AP, Otten L, Pitel S, Petkoski S, Jirsa V, Schmitt K, Wilbertz J, Patraskaki M,
    Sommer P, Heilmann-Heimbach S, Mathey CM, Miller A, Claus I, Nöthen MM, Hoffmann
    P, Forstner AJ, Pastor A, Gallego J, Orosa FE, Viapiana GF, Slater M, Marr L,
    Novarino G, Marquand A, Böttger SJ, Tschorn M, Rapp M, Ask H, Kjelkenes R, Fernandez
    S, Van Der Meer D, Westlye LT, Andreassen OA, Aden R, Seefried B, Siehl S, Nees
    F, Neidhart M, Stringaris A, Schwarz E, Holz N, Tost H, Meyer-Lindenberg A, Christmann
    N, Jansone K, Banaschewski T, Banks J, Schepanski K, Schütz T, Taron UH, Eils
    R, Roy JC, Lett TA, Kebir H, Polemiti E, Hitchen E, Jentsch M, Serin E, Bernas
    A, Vaidya N, Twardziok S, Ralser M, Heinz A, Walter H. 2024. Rethinking ethics
    in interdisciplinary and big data-driven neuroscience projects. Nature Mental
    Health. 2(10), 1128–1130.
  mla: Stahl, Bernd, et al. “Rethinking Ethics in Interdisciplinary and Big Data-Driven
    Neuroscience Projects.” <i>Nature Mental Health</i>, vol. 2, no. 10, 1128–1130,
    Springer Nature, 2024, doi:<a href="https://doi.org/10.1038/s44220-024-00320-3">10.1038/s44220-024-00320-3</a>.
  short: B. Stahl, G. Ogoh, G. Schumann, H. Walter, B. Stahl, A.H. Young, S. Desrivières,
    N. Clinton, P. Thompson, A. Schwalber, J. Liu, V. Calhoun, X. Chang, Y. Xia, Y.
    Gong, T. Jia, P. Renner, S. Hese, A. Giner, M. Sanchez, E. Alvarez, B. Spanlang,
    C. Pearmund, A.P. Athanasiadis, L. Otten, S. Pitel, S. Petkoski, V. Jirsa, K.
    Schmitt, J. Wilbertz, M. Patraskaki, P. Sommer, S. Heilmann-Heimbach, C.M. Mathey,
    A. Miller, I. Claus, M.M. Nöthen, P. Hoffmann, A.J. Forstner, A. Pastor, J. Gallego,
    F.E. Orosa, G.F. Viapiana, M. Slater, L. Marr, G. Novarino, A. Marquand, S.J.
    Böttger, M. Tschorn, M. Rapp, H. Ask, R. Kjelkenes, S. Fernandez, D. Van Der Meer,
    L.T. Westlye, O.A. Andreassen, R. Aden, B. Seefried, S. Siehl, F. Nees, M. Neidhart,
    A. Stringaris, E. Schwarz, N. Holz, H. Tost, A. Meyer-Lindenberg, N. Christmann,
    K. Jansone, T. Banaschewski, J. Banks, K. Schepanski, T. Schütz, U.H. Taron, R.
    Eils, J.C. Roy, T.A. Lett, H. Kebir, E. Polemiti, E. Hitchen, M. Jentsch, E. Serin,
    A. Bernas, N. Vaidya, S. Twardziok, M. Ralser, A. Heinz, H. Walter, Nature Mental
    Health 2 (2024).
date_created: 2025-08-10T22:01:30Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2025-08-11T06:53:55Z
day: '01'
department:
- _id: GaNo
doi: 10.1038/s44220-024-00320-3
intvolume: '         2'
issue: '10'
language:
- iso: eng
month: '10'
oa_version: None
publication: Nature Mental Health
publication_identifier:
  eissn:
  - 2731-6076
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rethinking ethics in interdisciplinary and big data-driven neuroscience projects
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2024'
...
---
OA_type: closed access
_id: '20527'
abstract:
- lang: eng
  text: "Arising from C. Yang et al. Nature Chemistry https://doi.org/10.1038/s41557-023-01212-2
    (2023)\r\n\r\nIn this work Yang et al.1 claim that an enantioselective Michael
    addition reaction with a barrier of 16 kcal mol−1 occurs at the single-molecule
    level in frozen solvent by measuring fluctuations in current flowing across graphene-based
    molecular devices. The article, however, contains major scientific errors that
    undermine their conclusions. We highlight issues with the fabrication of the devices,
    a lack of characterization, discrepancies between theory and experiment, unreliable
    inelastic electron tunnelling spectra (IETS) and a perceived misinterpretation
    of noise as evidence of reaction."
article_processing_charge: No
article_type: letter_note
author:
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
- first_name: Jan
  full_name: van Ruitenbeek, Jan
  last_name: van Ruitenbeek
citation:
  ama: Venkataraman L, van Ruitenbeek J. Questioning claims of monitoring the Michael
    addition reaction at the single-molecule level. <i>Nature Chemistry</i>. 2024;16(11):1767-1769.
    doi:<a href="https://doi.org/10.1038/s41557-024-01631-9">10.1038/s41557-024-01631-9</a>
  apa: Venkataraman, L., &#38; van Ruitenbeek, J. (2024). Questioning claims of monitoring
    the Michael addition reaction at the single-molecule level. <i>Nature Chemistry</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41557-024-01631-9">https://doi.org/10.1038/s41557-024-01631-9</a>
  chicago: Venkataraman, Latha, and Jan van Ruitenbeek. “Questioning Claims of Monitoring
    the Michael Addition Reaction at the Single-Molecule Level.” <i>Nature Chemistry</i>.
    Springer Nature, 2024. <a href="https://doi.org/10.1038/s41557-024-01631-9">https://doi.org/10.1038/s41557-024-01631-9</a>.
  ieee: L. Venkataraman and J. van Ruitenbeek, “Questioning claims of monitoring the
    Michael addition reaction at the single-molecule level,” <i>Nature Chemistry</i>,
    vol. 16, no. 11. Springer Nature, pp. 1767–1769, 2024.
  ista: Venkataraman L, van Ruitenbeek J. 2024. Questioning claims of monitoring the
    Michael addition reaction at the single-molecule level. Nature Chemistry. 16(11),
    1767–1769.
  mla: Venkataraman, Latha, and Jan van Ruitenbeek. “Questioning Claims of Monitoring
    the Michael Addition Reaction at the Single-Molecule Level.” <i>Nature Chemistry</i>,
    vol. 16, no. 11, Springer Nature, 2024, pp. 1767–69, doi:<a href="https://doi.org/10.1038/s41557-024-01631-9">10.1038/s41557-024-01631-9</a>.
  short: L. Venkataraman, J. van Ruitenbeek, Nature Chemistry 16 (2024) 1767–1769.
date_created: 2025-10-23T12:16:57Z
date_published: 2024-11-01T00:00:00Z
date_updated: 2025-10-23T12:58:52Z
day: '01'
doi: 10.1038/s41557-024-01631-9
extern: '1'
external_id:
  pmid:
  - '39313629'
intvolume: '        16'
issue: '11'
language:
- iso: eng
month: '11'
oa_version: None
page: 1767-1769
pmid: 1
publication: Nature Chemistry
publication_identifier:
  eissn:
  - 1755-4349
  issn:
  - 1755-4330
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Questioning claims of monitoring the Michael addition reaction at the single-molecule
  level
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2024'
...
---
OA_type: closed access
_id: '20529'
abstract:
- lang: eng
  text: Single molecules bridging two metallic electrodes can emit light through electroluminescence
    when subjected to a bias voltage. Typically, light emission in such devices results
    from transitions between molecular states, although in the presence of light-matter
    coupling, the emission can result from a transition between hybrid light-matter
    states. Here, we create single metal-molecule-metal junctions and simultaneously
    collect conductance and electroluminescence data using a scanning tunneling microscope
    (STM) equipped with a custom spectrometer. Through experimental analysis and electronic
    structure calculations, we provide evidence for a molecule-electrode interfacial
    exciton coupled to a junction cavity plasmon. Importantly, we find that close
    to resonant transport conditions, the molecular junction functions as a single
    emitter that is strongly coupled to the junction cavity mode, leading to characteristic
    Rabi splitting of the emission spectrum and providing the first example of an
    electroluminescence-driven single-molecule system in the regime of strong light-matter
    coupling.
article_processing_charge: No
article_type: original
author:
- first_name: Angela L.
  full_name: Paoletta, Angela L.
  last_name: Paoletta
- first_name: Norah M.
  full_name: Hoffmann, Norah M.
  last_name: Hoffmann
- first_name: Daniel W.
  full_name: Cheng, Daniel W.
  last_name: Cheng
- first_name: Emma
  full_name: York, Emma
  last_name: York
- first_name: Ding
  full_name: Xu, Ding
  last_name: Xu
- first_name: Boyuan
  full_name: Zhang, Boyuan
  last_name: Zhang
- first_name: Milan
  full_name: Delor, Milan
  last_name: Delor
- first_name: Timothy C.
  full_name: Berkelbach, Timothy C.
  last_name: Berkelbach
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
citation:
  ama: Paoletta AL, Hoffmann NM, Cheng DW, et al. Plasmon-exciton strong coupling
    in single-molecule junction electroluminescence. <i>Journal of the American Chemical
    Society</i>. 2024;146(50):34394-34400. doi:<a href="https://doi.org/10.1021/jacs.4c09782">10.1021/jacs.4c09782</a>
  apa: Paoletta, A. L., Hoffmann, N. M., Cheng, D. W., York, E., Xu, D., Zhang, B.,
    … Venkataraman, L. (2024). Plasmon-exciton strong coupling in single-molecule
    junction electroluminescence. <i>Journal of the American Chemical Society</i>.
    American Chemical Society. <a href="https://doi.org/10.1021/jacs.4c09782">https://doi.org/10.1021/jacs.4c09782</a>
  chicago: Paoletta, Angela L., Norah M. Hoffmann, Daniel W. Cheng, Emma York, Ding
    Xu, Boyuan Zhang, Milan Delor, Timothy C. Berkelbach, and Latha Venkataraman.
    “Plasmon-Exciton Strong Coupling in Single-Molecule Junction Electroluminescence.”
    <i>Journal of the American Chemical Society</i>. American Chemical Society, 2024.
    <a href="https://doi.org/10.1021/jacs.4c09782">https://doi.org/10.1021/jacs.4c09782</a>.
  ieee: A. L. Paoletta <i>et al.</i>, “Plasmon-exciton strong coupling in single-molecule
    junction electroluminescence,” <i>Journal of the American Chemical Society</i>,
    vol. 146, no. 50. American Chemical Society, pp. 34394–34400, 2024.
  ista: Paoletta AL, Hoffmann NM, Cheng DW, York E, Xu D, Zhang B, Delor M, Berkelbach
    TC, Venkataraman L. 2024. Plasmon-exciton strong coupling in single-molecule junction
    electroluminescence. Journal of the American Chemical Society. 146(50), 34394–34400.
  mla: Paoletta, Angela L., et al. “Plasmon-Exciton Strong Coupling in Single-Molecule
    Junction Electroluminescence.” <i>Journal of the American Chemical Society</i>,
    vol. 146, no. 50, American Chemical Society, 2024, pp. 34394–400, doi:<a href="https://doi.org/10.1021/jacs.4c09782">10.1021/jacs.4c09782</a>.
  short: A.L. Paoletta, N.M. Hoffmann, D.W. Cheng, E. York, D. Xu, B. Zhang, M. Delor,
    T.C. Berkelbach, L. Venkataraman, Journal of the American Chemical Society 146
    (2024) 34394–34400.
date_created: 2025-10-23T12:20:19Z
date_published: 2024-12-04T00:00:00Z
date_updated: 2025-10-23T13:03:41Z
day: '04'
doi: 10.1021/jacs.4c09782
extern: '1'
external_id:
  pmid:
  - '39630979'
intvolume: '       146'
issue: '50'
language:
- iso: eng
month: '12'
oa_version: None
page: 34394-34400
pmid: 1
publication: Journal of the American Chemical Society
publication_identifier:
  eissn:
  - 1520-5126
  issn:
  - 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Plasmon-exciton strong coupling in single-molecule junction electroluminescence
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 146
year: '2024'
...
---
OA_type: closed access
_id: '20615'
abstract:
- lang: eng
  text: "Spin/Pin-structures on vector bundles have long featured prominently in differential
    geometry, in particular providing part of the foundation for the original proof
    of the renowned Atiyah–Singer Index Theory. More recently, they have underpinned
    the symplectic topology foundations of the so-called real sector of the mirror
    symmetry of string theory.\r\n\r\nThis semi-expository three-part monograph provides
    an accessible introduction to Spin- and Pin-structures in general, demonstrates
    their role in the orientability considerations in symplectic topology, and presents
    their applications in enumerative geometry.\r\n\r\nPart I contains a systematic
    treatment of Spin/Pin-structures from different topological perspectives and may
    be suitable for an advanced undergraduate reading seminar. This leads to Part
    II, which systematically studies orientability problems for the determinants of
    real Cauchy–Riemann operators on vector bundles. Part III introduces enumerative
    geometry of curves in complex projective varieties and in symplectic manifolds,
    demonstrating some applications of the first two parts in the process. Two appendices
    review the Čech cohomology perspective on fiber bundles and Lie group covering
    spaces."
article_processing_charge: No
author:
- first_name: Xujia
  full_name: Chen, Xujia
  id: 968ad14a-fd86-11ee-a420-ea29715511a3
  last_name: Chen
- first_name: Aleksey
  full_name: Zinger, Aleksey
  last_name: Zinger
citation:
  ama: Chen X, Zinger A. <i>Spin/Pin-Structures and Real Enumerative Geometry</i>.
    World Scientific Publishing; 2024. doi:<a href="https://doi.org/10.1142/13476">10.1142/13476</a>
  apa: Chen, X., &#38; Zinger, A. (2024). <i>Spin/Pin-structures and real enumerative
    geometry</i>. World Scientific Publishing. <a href="https://doi.org/10.1142/13476">https://doi.org/10.1142/13476</a>
  chicago: Chen, Xujia, and Aleksey Zinger. <i>Spin/Pin-Structures and Real Enumerative
    Geometry</i>. World Scientific Publishing, 2024. <a href="https://doi.org/10.1142/13476">https://doi.org/10.1142/13476</a>.
  ieee: X. Chen and A. Zinger, <i>Spin/Pin-structures and real enumerative geometry</i>.
    World Scientific Publishing, 2024.
  ista: Chen X, Zinger A. 2024. Spin/Pin-structures and real enumerative geometry,
    World Scientific Publishing,p.
  mla: Chen, Xujia, and Aleksey Zinger. <i>Spin/Pin-Structures and Real Enumerative
    Geometry</i>. World Scientific Publishing, 2024, doi:<a href="https://doi.org/10.1142/13476">10.1142/13476</a>.
  short: X. Chen, A. Zinger, Spin/Pin-Structures and Real Enumerative Geometry, World
    Scientific Publishing, 2024.
date_created: 2025-11-10T08:40:10Z
date_published: 2024-01-01T00:00:00Z
date_updated: 2025-11-10T15:28:49Z
day: '01'
doi: 10.1142/13476
extern: '1'
language:
- iso: eng
month: '01'
oa_version: None
publication_identifier:
  eisbn:
  - '9789811278556'
  isbn:
  - '9789811278532'
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Spin/Pin-structures and real enumerative geometry
type: book
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '20756'
abstract:
- lang: eng
  text: Biocatalysis has the potential to address the need for more sustainable organic
    synthesis routes. Protein engineering can tune enzymes to perform in cascade reactions
    and for efficient synthesis of enantiomerically enriched compounds, using both
    natural and new-to-nature reaction pathways. This review highlights recent achievements
    in biocatalysis, especially the development of novel enzymatic syntheses to access
    versatile small molecule intermediates and complex biomolecules. Biocatalytic
    strategies for the degradation of persistent pollutants and approaches for biomass
    valorization are also discussed. The transition of chemical synthesis to a greener
    future will be accelerated by implementing enzymes and engineering them for high
    performance and new activities.
article_number: '102536'
article_processing_charge: No
article_type: original
author:
- first_name: Julia
  full_name: Reisenbauer, Julia
  id: 51d862e9-36ee-11f0-86d3-8534c85a5496
  last_name: Reisenbauer
- first_name: Kathleen M.
  full_name: Sicinski, Kathleen M.
  last_name: Sicinski
- first_name: Frances H.
  full_name: Arnold, Frances H.
  last_name: Arnold
citation:
  ama: 'Reisenbauer J, Sicinski KM, Arnold FH. Catalyzing the future: Recent advances
    in chemical synthesis using enzymes. <i>Current Opinion in Chemical Biology</i>.
    2024;83. doi:<a href="https://doi.org/10.1016/j.cbpa.2024.102536">10.1016/j.cbpa.2024.102536</a>'
  apa: 'Reisenbauer, J., Sicinski, K. M., &#38; Arnold, F. H. (2024). Catalyzing the
    future: Recent advances in chemical synthesis using enzymes. <i>Current Opinion
    in Chemical Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cbpa.2024.102536">https://doi.org/10.1016/j.cbpa.2024.102536</a>'
  chicago: 'Reisenbauer, Julia, Kathleen M. Sicinski, and Frances H. Arnold. “Catalyzing
    the Future: Recent Advances in Chemical Synthesis Using Enzymes.” <i>Current Opinion
    in Chemical Biology</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.cbpa.2024.102536">https://doi.org/10.1016/j.cbpa.2024.102536</a>.'
  ieee: 'J. Reisenbauer, K. M. Sicinski, and F. H. Arnold, “Catalyzing the future:
    Recent advances in chemical synthesis using enzymes,” <i>Current Opinion in Chemical
    Biology</i>, vol. 83. Elsevier, 2024.'
  ista: 'Reisenbauer J, Sicinski KM, Arnold FH. 2024. Catalyzing the future: Recent
    advances in chemical synthesis using enzymes. Current Opinion in Chemical Biology.
    83, 102536.'
  mla: 'Reisenbauer, Julia, et al. “Catalyzing the Future: Recent Advances in Chemical
    Synthesis Using Enzymes.” <i>Current Opinion in Chemical Biology</i>, vol. 83,
    102536, Elsevier, 2024, doi:<a href="https://doi.org/10.1016/j.cbpa.2024.102536">10.1016/j.cbpa.2024.102536</a>.'
  short: J. Reisenbauer, K.M. Sicinski, F.H. Arnold, Current Opinion in Chemical Biology
    83 (2024).
date_created: 2025-12-09T14:22:40Z
date_published: 2024-12-01T00:00:00Z
date_updated: 2025-12-16T13:03:48Z
day: '01'
doi: 10.1016/j.cbpa.2024.102536
extern: '1'
external_id:
  pmid:
  - '39369557'
intvolume: '        83'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://europepmc.org/article/med/39369557#free-full-text
month: '12'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: Current Opinion in Chemical Biology
publication_identifier:
  eissn:
  - 1879-0402
  issn:
  - 1367-5931
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Catalyzing the future: Recent advances in chemical synthesis using enzymes'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 83
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20757'
abstract:
- lang: eng
  text: We report the utilisation of an iodine(III) reagent to access α,β-unsaturated
    carbonyls from the corresponding silyl enol ethers and enol phosphates. The transformation
    can also be carried out in one pot, directly dehydrogenating carbonyls.
article_processing_charge: No
article_type: original
author:
- first_name: Bence B.
  full_name: Botlik, Bence B.
  last_name: Botlik
- first_name: Patrick
  full_name: Finkelstein, Patrick
  last_name: Finkelstein
- first_name: Ann-Sophie K.
  full_name: Paschke, Ann-Sophie K.
  last_name: Paschke
- first_name: Julia
  full_name: Reisenbauer, Julia
  id: 51d862e9-36ee-11f0-86d3-8534c85a5496
  last_name: Reisenbauer
- first_name: Bill
  full_name: Morandi, Bill
  last_name: Morandi
citation:
  ama: Botlik BB, Finkelstein P, Paschke A-SK, Reisenbauer J, Morandi B. Versatile
    dehydrogenation of carbonyls enabled by an iodine(III) reagent. <i>Chemical Communications</i>.
    2024;60(69):9254-9257. doi:<a href="https://doi.org/10.1039/d4cc02609h">10.1039/d4cc02609h</a>
  apa: Botlik, B. B., Finkelstein, P., Paschke, A.-S. K., Reisenbauer, J., &#38; Morandi,
    B. (2024). Versatile dehydrogenation of carbonyls enabled by an iodine(III) reagent.
    <i>Chemical Communications</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/d4cc02609h">https://doi.org/10.1039/d4cc02609h</a>
  chicago: Botlik, Bence B., Patrick Finkelstein, Ann-Sophie K. Paschke, Julia Reisenbauer,
    and Bill Morandi. “Versatile Dehydrogenation of Carbonyls Enabled by an Iodine(III)
    Reagent.” <i>Chemical Communications</i>. Royal Society of Chemistry, 2024. <a
    href="https://doi.org/10.1039/d4cc02609h">https://doi.org/10.1039/d4cc02609h</a>.
  ieee: B. B. Botlik, P. Finkelstein, A.-S. K. Paschke, J. Reisenbauer, and B. Morandi,
    “Versatile dehydrogenation of carbonyls enabled by an iodine(III) reagent,” <i>Chemical
    Communications</i>, vol. 60, no. 69. Royal Society of Chemistry, pp. 9254–9257,
    2024.
  ista: Botlik BB, Finkelstein P, Paschke A-SK, Reisenbauer J, Morandi B. 2024. Versatile
    dehydrogenation of carbonyls enabled by an iodine(III) reagent. Chemical Communications.
    60(69), 9254–9257.
  mla: Botlik, Bence B., et al. “Versatile Dehydrogenation of Carbonyls Enabled by
    an Iodine(III) Reagent.” <i>Chemical Communications</i>, vol. 60, no. 69, Royal
    Society of Chemistry, 2024, pp. 9254–57, doi:<a href="https://doi.org/10.1039/d4cc02609h">10.1039/d4cc02609h</a>.
  short: B.B. Botlik, P. Finkelstein, A.-S.K. Paschke, J. Reisenbauer, B. Morandi,
    Chemical Communications 60 (2024) 9254–9257.
date_created: 2025-12-09T14:23:00Z
date_published: 2024-08-02T00:00:00Z
date_updated: 2025-12-16T11:19:43Z
day: '02'
doi: 10.1039/d4cc02609h
extern: '1'
external_id:
  pmid:
  - '39118590'
has_accepted_license: '1'
intvolume: '        60'
issue: '69'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1039/D4CC02609H
month: '08'
oa: 1
oa_version: Published Version
page: 9254-9257
pmid: 1
publication: Chemical Communications
publication_identifier:
  eissn:
  - 1364-548X
  issn:
  - 1359-7345
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Versatile dehydrogenation of carbonyls enabled by an iodine(III) reagent
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/3.0/legalcode
  name: Creative Commons Attribution-NonCommercial 3.0 Unported (CC BY-NC 3.0)
  short: CC BY-NC (3.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 60
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20807'
abstract:
- lang: eng
  text: Human glutamate carboxypeptidase 2 (GCP2) from the M28B metalloprotease group
    is an important target for therapy in neurological disorders and an established
    tumor marker. However, its physiological functions remain unclear. To better understand
    general roles, we used the model organism Caenorhabditis elegans to genetically
    manipulate its three existing orthologous genes and evaluate the impact on worm
    physiology. The results of gene knockout studies showed that C. elegans GCP2 orthologs
    affect the pharyngeal physiology, reproduction, and structural integrity of the
    organism. Promoter-driven GFP expression revealed distinct localization for each
    of the three gene paralogs, with gcp-2.1 being most abundant in muscles, intestine,
    and pharyngeal interneurons, gcp-2.2 restricted to the phasmid neurons, and gcp-2.3
    located in the excretory cell. The present study provides new insight into the
    unique phenotypic effects of GCP2 gene knockouts in C. elegans, and the specific
    tissue localizations. We believe that elucidation of particular roles in a non-mammalian
    organism can help to explain important questions linked to physiology of this
    protease group and in extension to human GCP2 involvement in pathophysiological
    processes.
article_number: BSR20230502
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Lucie
  full_name: Panska, Lucie
  last_name: Panska
- first_name: Stepanka
  full_name: Nedvedova, Stepanka
  last_name: Nedvedova
- first_name: Vojtech
  full_name: Vacek, Vojtech
  last_name: Vacek
- first_name: Daniela
  full_name: Krivska, Daniela
  last_name: Krivska
- first_name: Lukas
  full_name: Konecny, Lukas
  last_name: Konecny
- first_name: Filip
  full_name: Knop, Filip
  id: 25f3131f-6e7c-11ef-8296-b64ccd4a1b69
  last_name: Knop
  orcid: 0000-0002-3845-3465
- first_name: Zsofia
  full_name: Kutil, Zsofia
  last_name: Kutil
- first_name: Lubica
  full_name: Skultetyova, Lubica
  last_name: Skultetyova
- first_name: Adrian
  full_name: Leontovyc, Adrian
  last_name: Leontovyc
- first_name: Lenka
  full_name: Ulrychova, Lenka
  last_name: Ulrychova
- first_name: Judy
  full_name: Sakanari, Judy
  last_name: Sakanari
- first_name: Masako
  full_name: Asahina, Masako
  last_name: Asahina
- first_name: Cyril
  full_name: Barinka, Cyril
  last_name: Barinka
- first_name: Marie
  full_name: Macurkova, Marie
  last_name: Macurkova
- first_name: Jan
  full_name: Dvorak, Jan
  last_name: Dvorak
citation:
  ama: Panska L, Nedvedova S, Vacek V, et al. Uncovering the essential roles of glutamate
    carboxypeptidase 2 orthologs in Caenorhabditis elegans. <i>Bioscience Reports</i>.
    2024;44(1). doi:<a href="https://doi.org/10.1042/bsr20230502">10.1042/bsr20230502</a>
  apa: Panska, L., Nedvedova, S., Vacek, V., Krivska, D., Konecny, L., Knop, F., …
    Dvorak, J. (2024). Uncovering the essential roles of glutamate carboxypeptidase
    2 orthologs in Caenorhabditis elegans. <i>Bioscience Reports</i>. Portland Press.
    <a href="https://doi.org/10.1042/bsr20230502">https://doi.org/10.1042/bsr20230502</a>
  chicago: Panska, Lucie, Stepanka Nedvedova, Vojtech Vacek, Daniela Krivska, Lukas
    Konecny, Filip Knop, Zsofia Kutil, et al. “Uncovering the Essential Roles of Glutamate
    Carboxypeptidase 2 Orthologs in Caenorhabditis Elegans.” <i>Bioscience Reports</i>.
    Portland Press, 2024. <a href="https://doi.org/10.1042/bsr20230502">https://doi.org/10.1042/bsr20230502</a>.
  ieee: L. Panska <i>et al.</i>, “Uncovering the essential roles of glutamate carboxypeptidase
    2 orthologs in Caenorhabditis elegans,” <i>Bioscience Reports</i>, vol. 44, no.
    1. Portland Press, 2024.
  ista: Panska L, Nedvedova S, Vacek V, Krivska D, Konecny L, Knop F, Kutil Z, Skultetyova
    L, Leontovyc A, Ulrychova L, Sakanari J, Asahina M, Barinka C, Macurkova M, Dvorak
    J. 2024. Uncovering the essential roles of glutamate carboxypeptidase 2 orthologs
    in Caenorhabditis elegans. Bioscience Reports. 44(1), BSR20230502.
  mla: Panska, Lucie, et al. “Uncovering the Essential Roles of Glutamate Carboxypeptidase
    2 Orthologs in Caenorhabditis Elegans.” <i>Bioscience Reports</i>, vol. 44, no.
    1, BSR20230502, Portland Press, 2024, doi:<a href="https://doi.org/10.1042/bsr20230502">10.1042/bsr20230502</a>.
  short: L. Panska, S. Nedvedova, V. Vacek, D. Krivska, L. Konecny, F. Knop, Z. Kutil,
    L. Skultetyova, A. Leontovyc, L. Ulrychova, J. Sakanari, M. Asahina, C. Barinka,
    M. Macurkova, J. Dvorak, Bioscience Reports 44 (2024).
date_created: 2025-12-12T09:03:54Z
date_published: 2024-01-12T00:00:00Z
date_updated: 2025-12-15T10:21:56Z
day: '12'
ddc:
- '570'
doi: 10.1042/bsr20230502
extern: '1'
external_id:
  pmid:
  - '38108122 '
has_accepted_license: '1'
intvolume: '        44'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1042/BSR20230502
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: Bioscience Reports
publication_identifier:
  eissn:
  - 1573-4935
  issn:
  - 0144-8463
publication_status: published
publisher: Portland Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Uncovering the essential roles of glutamate carboxypeptidase 2 orthologs in
  Caenorhabditis elegans
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 44
year: '2024'
...
