---
OA_place: repository
_id: '19013'
abstract:
- lang: eng
text: We study the singularities of the moduli space of degree e maps from smooth
genus g curves to an arbitrary smooth hypersurface of low degree. For e large
compared to g, we show that these moduli spaces have at worst terminal singularities.
Our main approach is to study the jet schemes of these moduli spaces by developing
a suitable form of the circle method.
article_processing_charge: No
arxiv: 1
author:
- first_name: Jakob
full_name: Glas, Jakob
id: d6423cba-dc74-11ea-a0a7-ee61689ff5fb
last_name: Glas
- first_name: 'Matthew '
full_name: 'Hase-Liu, Matthew '
last_name: Hase-Liu
citation:
ama: Glas J, Hase-Liu M. Terminal singularities of the moduli space of curves on
low degree hypersurfaces and the circle method. arXiv. doi:10.48550/arXiv.2412.14923
apa: Glas, J., & Hase-Liu, M. (n.d.). Terminal singularities of the moduli space
of curves on low degree hypersurfaces and the circle method. arXiv. https://doi.org/10.48550/arXiv.2412.14923
chicago: Glas, Jakob, and Matthew Hase-Liu. “Terminal Singularities of the Moduli
Space of Curves on Low Degree Hypersurfaces and the Circle Method.” ArXiv,
n.d. https://doi.org/10.48550/arXiv.2412.14923.
ieee: J. Glas and M. Hase-Liu, “Terminal singularities of the moduli space of curves
on low degree hypersurfaces and the circle method,” arXiv. .
ista: Glas J, Hase-Liu M. Terminal singularities of the moduli space of curves on
low degree hypersurfaces and the circle method. arXiv, 10.48550/arXiv.2412.14923.
mla: Glas, Jakob, and Matthew Hase-Liu. “Terminal Singularities of the Moduli Space
of Curves on Low Degree Hypersurfaces and the Circle Method.” ArXiv, doi:10.48550/arXiv.2412.14923.
short: J. Glas, M. Hase-Liu, ArXiv (n.d.).
corr_author: '1'
date_created: 2025-02-07T12:04:11Z
date_published: 2024-12-19T00:00:00Z
date_updated: 2025-04-15T08:05:40Z
day: '19'
department:
- _id: TiBr
doi: 10.48550/arXiv.2412.14923
external_id:
arxiv:
- '2412.14923'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2412.14923
month: '12'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: draft
related_material:
record:
- id: '18295'
relation: earlier_version
status: public
status: public
title: Terminal singularities of the moduli space of curves on low degree hypersurfaces
and the circle method
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19028'
abstract:
- lang: eng
text: The stochastic nature of modern Monte Carlo (MC) rendering methods inevitably
produces noise in rendered images for a practical number of samples per pixel.
The problem of denoising these images has been widely studied, with most recent
methods relying on data-driven, pretrained neural networks. In contrast, in this
paper we propose a statistical approach to the denoising problem, treating each
pixel as a random variable and reasoning about its distribution. Considering a
pixel of the noisy rendered image, we formulate fast pair-wise statistical tests—based
on online estimators—to decide which of the nearby pixels to exclude from the
denoising filter. We show that for symmetric pixel weights and normally distributed
samples, the classical Welch t-test is optimal in terms of mean squared error.
We then show how to extend this result to handle non-normal distributions, using
more recent confidence-interval formulations in combination with the Box-Cox transformation.
Our results show that our statistical denoising approach matches the performance
of state-of-the-art neural image denoising without having to resort to any computation-intensive
pretraining. Furthermore, our approach easily generalizes to other quantities
besides pixel intensity, which we demonstrate by showing additional applications
to Russian roulette path termination and multiple importance sampling.
acknowledgement: 'We would like to thank Lukas Lipp for fruitful discussions, Károly
Zsolnai-Fehér and Jaroslav Křivánek for valuable contributions to early versions
of this work, and Bernhard Kerbl for help with our CUDA implementation. Moreover,
we would like to thank the creators of the scenes we have used: Wig42 for “Wooden
Staircase” (Fig. 1), “Grey and White Room” (Fig. S6), and “Modern Living Room” (Fig.
S8); nacimus for “Bathroom” (Fig. 3, S5); NovaZeeke for “Japanese Classroom” (Fig.
4, 6); Beeple for “Zero-Day” (Fig. 8); Jay-Artist for “White Room” (Fig. S7); Mareck
for “Contemporary Bathroom” (Fig. 2); Christian Freude for “Glass Caustics” (Fig.
S10); and Benedikt Bitterli for “Veach Ajar” (Fig. 7, S2), “Veach MIS” (Fig. S4),
and “Fur Ball” (Fig. S11). This work has received funding from the Vienna Science
and Technology Fund (WWTF) project ICT22-028 (“Toward Optimal Path Guiding for Photorealistic
Rendering”) and the Austrian Science Fund (FWF) project F 77 (SFB “Advanced Computational
Design”).'
article_number: '68'
article_processing_charge: Yes (in subscription journal)
author:
- first_name: Hiroyuki
full_name: Sakai, Hiroyuki
last_name: Sakai
- first_name: Christian
full_name: Freude, Christian
last_name: Freude
- first_name: Thomas
full_name: Auzinger, Thomas
id: 4718F954-F248-11E8-B48F-1D18A9856A87
last_name: Auzinger
orcid: 0000-0002-1546-3265
- first_name: David
full_name: Hahn, David
id: 357A6A66-F248-11E8-B48F-1D18A9856A87
last_name: Hahn
- first_name: Michael
full_name: Wimmer, Michael
last_name: Wimmer
citation:
ama: 'Sakai H, Freude C, Auzinger T, Hahn D, Wimmer M. A statistical approach to
Monte Carlo denoising. In: Proceedings - SIGGRAPH Asia 2024 Conference Papers.
Association for Computing Machinery; 2024. doi:10.1145/3680528.3687591'
apa: 'Sakai, H., Freude, C., Auzinger, T., Hahn, D., & Wimmer, M. (2024). A
statistical approach to Monte Carlo denoising. In Proceedings - SIGGRAPH Asia
2024 Conference Papers. Tokyo, Japan: Association for Computing Machinery.
https://doi.org/10.1145/3680528.3687591'
chicago: Sakai, Hiroyuki, Christian Freude, Thomas Auzinger, David Hahn, and Michael
Wimmer. “A Statistical Approach to Monte Carlo Denoising.” In Proceedings -
SIGGRAPH Asia 2024 Conference Papers. Association for Computing Machinery,
2024. https://doi.org/10.1145/3680528.3687591.
ieee: H. Sakai, C. Freude, T. Auzinger, D. Hahn, and M. Wimmer, “A statistical approach
to Monte Carlo denoising,” in Proceedings - SIGGRAPH Asia 2024 Conference Papers,
Tokyo, Japan, 2024.
ista: 'Sakai H, Freude C, Auzinger T, Hahn D, Wimmer M. 2024. A statistical approach
to Monte Carlo denoising. Proceedings - SIGGRAPH Asia 2024 Conference Papers.
SA: SIGGRAPH Asia, 68.'
mla: Sakai, Hiroyuki, et al. “A Statistical Approach to Monte Carlo Denoising.”
Proceedings - SIGGRAPH Asia 2024 Conference Papers, 68, Association for
Computing Machinery, 2024, doi:10.1145/3680528.3687591.
short: H. Sakai, C. Freude, T. Auzinger, D. Hahn, M. Wimmer, in:, Proceedings -
SIGGRAPH Asia 2024 Conference Papers, Association for Computing Machinery, 2024.
conference:
end_date: 2024-12-06
location: Tokyo, Japan
name: 'SA: SIGGRAPH Asia'
start_date: 2024-12-03
date_created: 2025-02-16T23:02:34Z
date_published: 2024-12-03T00:00:00Z
date_updated: 2025-12-02T13:58:56Z
day: '03'
ddc:
- '000'
doi: 10.1145/3680528.3687591
external_id:
isi:
- '001441591200068'
file:
- access_level: open_access
checksum: 89f63b9237224362ec33430af9152700
content_type: application/pdf
creator: dernst
date_created: 2025-04-15T12:53:24Z
date_updated: 2025-04-15T12:53:24Z
file_id: '19563'
file_name: 2024_SIGGRAPH_Sakai.pdf
file_size: 14791980
relation: main_file
success: 1
file_date_updated: 2025-04-15T12:53:24Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Proceedings - SIGGRAPH Asia 2024 Conference Papers
publication_identifier:
isbn:
- '9798400711312'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: A statistical approach to Monte Carlo denoising
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19051'
abstract:
- lang: eng
text: This paper corrects an error in an earlier work of the author.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
citation:
ama: Browning TD. The polynomial sieve and equal sums of like polynomials. International
Mathematics Research Notices. 2024;2024(13):10165-10168. doi:10.1093/imrn/rnae066
apa: Browning, T. D. (2024). The polynomial sieve and equal sums of like polynomials.
International Mathematics Research Notices. Oxford University Press. https://doi.org/10.1093/imrn/rnae066
chicago: Browning, Timothy D. “The Polynomial Sieve and Equal Sums of like Polynomials.”
International Mathematics Research Notices. Oxford University Press, 2024.
https://doi.org/10.1093/imrn/rnae066.
ieee: T. D. Browning, “The polynomial sieve and equal sums of like polynomials,”
International Mathematics Research Notices, vol. 2024, no. 13. Oxford University
Press, pp. 10165–10168, 2024.
ista: Browning TD. 2024. The polynomial sieve and equal sums of like polynomials.
International Mathematics Research Notices. 2024(13), 10165–10168.
mla: Browning, Timothy D. “The Polynomial Sieve and Equal Sums of like Polynomials.”
International Mathematics Research Notices, vol. 2024, no. 13, Oxford University
Press, 2024, pp. 10165–68, doi:10.1093/imrn/rnae066.
short: T.D. Browning, International Mathematics Research Notices 2024 (2024) 10165–10168.
corr_author: '1'
date_created: 2025-02-18T07:15:50Z
date_published: 2024-07-01T00:00:00Z
date_updated: 2025-09-09T12:16:45Z
day: '01'
ddc:
- '510'
department:
- _id: TiBr
doi: 10.1093/imrn/rnae066
external_id:
isi:
- '001196957300001'
file:
- access_level: open_access
checksum: b625b8adf018d2a97591813c1fc17b96
content_type: application/pdf
creator: dernst
date_created: 2025-02-18T07:56:36Z
date_updated: 2025-02-18T07:56:36Z
file_id: '19052'
file_name: 2024_IMRN_Browning.pdf
file_size: 205750
relation: main_file
success: 1
file_date_updated: 2025-02-18T07:56:36Z
has_accepted_license: '1'
intvolume: ' 2024'
isi: 1
issue: '13'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 10165-10168
publication: International Mathematics Research Notices
publication_identifier:
eissn:
- 1687-0247
issn:
- 1073-7928
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
record:
- id: '254'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: The polynomial sieve and equal sums of like polynomials
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 2024
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '19063'
abstract:
- lang: eng
text: "Instruction-tuned Large Language Models (LLMs) show impressive results in
numerous practical applications, but they lack essential safety features that
are common in other areas of computer science, particularly an explicit separation
of instructions and data. This makes them vulnerable to manipulations such as
indirect prompt injections and generally unsuitable for safety-critical tasks.
Surprisingly, there is currently no established definition or benchmark to quantify
this phenomenon. In this work, we close this gap by introducing a formal measure
for instruction-data separation and an empirical variant that is calculable from
a model's outputs. We also present a new dataset, SEP, that allows estimating
the measure for real-world models. Our results on various LLMs show that the problem
of instruction-data separation is real: all models fail to achieve high separation,
and canonical mitigation techniques, such as prompt engineering and fine-tuning,
either fail to substantially improve separation or reduce model utility. The source
code and SEP dataset are openly accessible at https://github.com/egozverev/Shold-It-Be-Executed-Or-Processed.\r\n"
acknowledged_ssus:
- _id: ScienComp
acknowledgement: The authors would like to sincerely thank Juan Rocamonde for valuable
feedback to our manuscript. We acknowledge the support from the Scientific Service
Units (SSU) of ISTA through resources provided by Scientific Computing (SciComp).
We thank Dan Alistarh for providing us with computational resources. This work was
partially funded by the German Federal Ministry of Education and Research (BMBF)
under the grant AIgenCY (16KIS2012) and ELSA – European Lighthouse on Secure and
Safe AI funded by the European Union under grant agreement No. 101070617. Views
and opinions expressed are however those of the authors only and do not necessarily
reflect those of the European Union or European Commission. Neither the European
Union nor the European Commission can be held responsible for them.
article_number: '2403.06833'
article_processing_charge: No
arxiv: 1
author:
- first_name: Egor
full_name: Zverev, Egor
id: 05162b19-1340-11ed-8f02-fa94e0e8c3bc
last_name: Zverev
- first_name: Sahar
full_name: Abdelnabi, Sahar
last_name: Abdelnabi
- first_name: Soroush
full_name: Tabesh, Soroush
id: 06000900-6068-11ef-8d61-c2472ef2e752
last_name: Tabesh
orcid: 0009-0003-4119-6281
- first_name: Mario
full_name: Fritz, Mario
last_name: Fritz
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: Zverev E, Abdelnabi S, Tabesh S, Fritz M, Lampert C. Can LLMs separate instructions
from data? And what do we even mean by that? arXiv. 2024. doi:10.48550/arXiv.2403.06833
apa: Zverev, E., Abdelnabi, S., Tabesh, S., Fritz, M., & Lampert, C. (2024).
Can LLMs separate instructions from data? And what do we even mean by that? arXiv.
https://doi.org/10.48550/arXiv.2403.06833
chicago: Zverev, Egor, Sahar Abdelnabi, Soroush Tabesh, Mario Fritz, and Christoph
Lampert. “Can LLMs Separate Instructions from Data? And What Do We Even Mean by
That?” ArXiv, 2024. https://doi.org/10.48550/arXiv.2403.06833.
ieee: E. Zverev, S. Abdelnabi, S. Tabesh, M. Fritz, and C. Lampert, “Can LLMs separate
instructions from data? And what do we even mean by that?,” arXiv. 2024.
ista: Zverev E, Abdelnabi S, Tabesh S, Fritz M, Lampert C. 2024. Can LLMs separate
instructions from data? And what do we even mean by that? arXiv, 2403.06833.
mla: Zverev, Egor, et al. “Can LLMs Separate Instructions from Data? And What Do
We Even Mean by That?” ArXiv, 2403.06833, 2024, doi:10.48550/arXiv.2403.06833.
short: E. Zverev, S. Abdelnabi, S. Tabesh, M. Fritz, C. Lampert, ArXiv (2024).
corr_author: '1'
date_created: 2025-02-20T10:13:42Z
date_published: 2024-03-01T00:00:00Z
date_updated: 2025-02-24T12:52:23Z
day: '01'
ddc:
- '000'
department:
- _id: GradSch
- _id: ChLa
doi: 10.48550/arXiv.2403.06833
external_id:
arxiv:
- '2403.06833'
file:
- access_level: open_access
checksum: 35eb43968684b87be59144603ef10af0
content_type: application/pdf
creator: ezverev
date_created: 2025-02-20T10:11:45Z
date_updated: 2025-02-20T10:11:45Z
file_id: '19064'
file_name: 2403.06833v3.pdf
file_size: 530972
relation: main_file
success: 1
file_date_updated: 2025-02-20T10:11:45Z
has_accepted_license: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-sa/4.0/
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2403.06833
month: '03'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: published
related_material:
link:
- relation: software
url: ' https://github.com/egozverev/Shold-It-Be-Executed-Or-Processed'
status: public
title: Can LLMs separate instructions from data? And what do we even mean by that?
tmp:
image: /images/cc_by_sa.png
legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode
name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC
BY-SA 4.0)
short: CC BY-SA (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '14463'
abstract:
- lang: eng
text: Inversions are thought to play a key role in adaptation and speciation, suppressing
recombination between diverging populations. Genes influencing adaptive traits
cluster in inversions, and changes in inversion frequencies are associated with
environmental differences. However, in many organisms, it is unclear if inversions
are geographically and taxonomically widespread. The intertidal snail, Littorina
saxatilis, is one such example. Strong associations between putative polymorphic
inversions and phenotypic differences have been demonstrated between two ecotypes
of L. saxatilis in Sweden and inferred elsewhere, but no direct evidence for inversion
polymorphism currently exists across the species range. Using whole genome data
from 107 snails, most inversion polymorphisms were found to be widespread across
the species range. The frequencies of some inversion arrangements were significantly
different among ecotypes, suggesting a parallel adaptive role. Many inversions
were also polymorphic in the sister species, L. arcana, hinting at an ancient
origin.
acknowledgement: We would like to thank members of the Littorina team for their advice
and feedback during this project. In particular, we thank Alan Le Moan, who inspired
us to look at heterozygosity differences to identify inversions, and Katherine Hearn
for helping with the PCA scripts. We thank Edinburgh Genomics for library preparation
and sequencing. Sample collections, sequencing and data preparation were supported
by the European Research Council (ERC-2015-AdG-693030- BARRIERS) and the Natural
Environment Research Council (NE/P001610/1). The analysis was supported by the Swedish
Research Council (vetenskaprådet; 2018-03695_VR) and the Portuguese Foundation for
Science and Technology (Fundación para a Ciência e Tecnologia) through a research
project (PTDC/BIA-EVL/1614/2021) and CEEC contract (2020.00275.CEECIND).
article_number: e17160
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: James
full_name: Reeve, James
last_name: Reeve
- first_name: Roger K.
full_name: Butlin, Roger K.
last_name: Butlin
- first_name: Eva L.
full_name: Koch, Eva L.
last_name: Koch
- first_name: Sean
full_name: Stankowski, Sean
id: 43161670-5719-11EA-8025-FABC3DDC885E
last_name: Stankowski
- first_name: Rui
full_name: Faria, Rui
last_name: Faria
citation:
ama: Reeve J, Butlin RK, Koch EL, Stankowski S, Faria R. Chromosomal inversion polymorphisms
are widespread across the species ranges of rough periwinkles (Littorina saxatilis
and L. arcana). Molecular Ecology. 2024;33(24). doi:10.1111/mec.17160
apa: Reeve, J., Butlin, R. K., Koch, E. L., Stankowski, S., & Faria, R. (2024).
Chromosomal inversion polymorphisms are widespread across the species ranges of
rough periwinkles (Littorina saxatilis and L. arcana). Molecular Ecology.
Wiley. https://doi.org/10.1111/mec.17160
chicago: Reeve, James, Roger K. Butlin, Eva L. Koch, Sean Stankowski, and Rui Faria.
“Chromosomal Inversion Polymorphisms Are Widespread across the Species Ranges
of Rough Periwinkles (Littorina Saxatilis and L. Arcana).” Molecular Ecology.
Wiley, 2024. https://doi.org/10.1111/mec.17160.
ieee: J. Reeve, R. K. Butlin, E. L. Koch, S. Stankowski, and R. Faria, “Chromosomal
inversion polymorphisms are widespread across the species ranges of rough periwinkles
(Littorina saxatilis and L. arcana),” Molecular Ecology, vol. 33, no. 24.
Wiley, 2024.
ista: Reeve J, Butlin RK, Koch EL, Stankowski S, Faria R. 2024. Chromosomal inversion
polymorphisms are widespread across the species ranges of rough periwinkles (Littorina
saxatilis and L. arcana). Molecular Ecology. 33(24), e17160.
mla: Reeve, James, et al. “Chromosomal Inversion Polymorphisms Are Widespread across
the Species Ranges of Rough Periwinkles (Littorina Saxatilis and L. Arcana).”
Molecular Ecology, vol. 33, no. 24, e17160, Wiley, 2024, doi:10.1111/mec.17160.
short: J. Reeve, R.K. Butlin, E.L. Koch, S. Stankowski, R. Faria, Molecular Ecology
33 (2024).
date_created: 2023-10-29T23:01:17Z
date_published: 2024-12-01T00:00:00Z
date_updated: 2025-01-09T07:53:18Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/mec.17160
external_id:
isi:
- '001085119000001'
pmid:
- '37843465'
file:
- access_level: open_access
checksum: 686576036663f489c2d079df3079d126
content_type: application/pdf
creator: dernst
date_created: 2025-01-09T07:52:12Z
date_updated: 2025-01-09T07:52:12Z
file_id: '18785'
file_name: 2024_MolecularEcology_Reeve.pdf
file_size: 6228700
relation: main_file
success: 1
file_date_updated: 2025-01-09T07:52:12Z
has_accepted_license: '1'
intvolume: ' 33'
isi: 1
issue: '24'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Molecular Ecology
publication_identifier:
eissn:
- 1365-294X
issn:
- 0962-1083
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Chromosomal inversion polymorphisms are widespread across the species ranges
of rough periwinkles (Littorina saxatilis and L. arcana)
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2024'
...
---
APC_amount: 3040,36 EUR
OA_place: publisher
OA_type: hybrid
_id: '14478'
abstract:
- lang: eng
text: Entire chromosomes are typically only transmitted vertically from one generation
to the next. The horizontal transfer of such chromosomes has long been considered
improbable, yet gained recent support in several pathogenic fungi where it may
affect the fitness or host specificity. To date, it is unknown how these transfers
occur, how common they are and whether they can occur between different species.
In this study, we show multiple independent instances of horizontal transfers
of the same accessory chromosome between two distinct strains of the asexual entomopathogenic
fungusMetarhizium robertsiiduring experimental co-infection
of its insect host, the Argentine ant. Notably, only the one chromosome – but
no other – was transferred from the donor to the recipient strain. The recipient
strain, now harboring the accessory chromosome, exhibited a competitive advantage
under certain host conditions. By phylogenetic analysis we further demonstrate
that the same accessory chromosome was horizontally transferred in a natural environment
betweenM. robertsiiand another congeneric insect pathogen,M.
guizhouense. Hence horizontal chromosome transfer is not limited
to the observed frequent events within species during experimental infections
but also occurs naturally across species. The transferred accessory chromosome
contains genes that might be involved in its preferential horizontal transfer,
encoding putative histones and histone-modifying enzymes, but also putative virulence
factors that may support its establishment. Our study reveals that both intra-
and interspecies horizontal transfer of entire chromosomes is more frequent than
previously assumed, likely representing a not uncommon mechanism for gene exchange.Significance
StatementThe enormous success of bacterial pathogens has
been attributed to their ability to exchange genetic material between one another.
Similarly, in eukaryotes, horizontal transfer of genetic material allowed the
spread of virulence factors across species. The horizontal transfer of whole chromosomes
could be an important pathway for such exchange of genetic material, but little
is known about the origin of transferable chromosomes and how frequently they
are exchanged. Here, we show that the transfer of accessory chromosomes - chromosomes
that are non-essential but may provide fitness benefits - is common during fungal
co-infections and is even possible between distant pathogenic species, highlighting
the importance of horizontal gene transfer via chromosome transfer also for the
evolution and function of eukaryotic pathogens.
acknowledgement: We thank Bernhardt Steinwender, Jorgen Eilenberg, and Nicolai V.
Meyling for the fungal strains. We further thank Chengshu Wang for providing the
short sequencing reads for M. guizhouense ARESF977 he used for his published genome
assembly, and Kristian Ullrich for help in the bioinformatics analysis for methylation
pattern in Nanopore reads, and the VBC and the Max Planck Society for the use of
their sequencing centers. We thank Barbara Milutinović and Hinrich Schulenburg for
discussion, and Tal Dagan and Jens Rolff for comments on a previous version of the
manuscript. Fig. 1A was created with BioRender.com. This study received funding
by the European Research Council under the European Union’s Horizon 2020 Research
and Innovation Programme (No. 771402; EPIDEMICSonCHIP) to S.C. and by the German
Research Foundation (DFG grant HA9263/1-1) to M.H.
article_number: e2316284121
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Michael
full_name: Habig, Michael
last_name: Habig
- first_name: Anna V
full_name: Grasse, Anna V
id: 406F989C-F248-11E8-B48F-1D18A9856A87
last_name: Grasse
- first_name: Judith
full_name: Müller, Judith
last_name: Müller
- first_name: Eva H.
full_name: Stukenbrock, Eva H.
last_name: Stukenbrock
- first_name: Hanna
full_name: Leitner, Hanna
id: 8fc5c6f6-5903-11ec-abad-c83f046253e7
last_name: Leitner
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Habig M, Grasse AV, Müller J, Stukenbrock EH, Leitner H, Cremer S. Frequent
horizontal chromosome transfer between asexual fungal insect pathogens. Proceedings
of the National Academy of Sciences of the United States of America. 2024;121(11).
doi:10.1073/pnas.2316284121
apa: Habig, M., Grasse, A. V., Müller, J., Stukenbrock, E. H., Leitner, H., &
Cremer, S. (2024). Frequent horizontal chromosome transfer between asexual fungal
insect pathogens. Proceedings of the National Academy of Sciences of the United
States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2316284121
chicago: Habig, Michael, Anna V Grasse, Judith Müller, Eva H. Stukenbrock, Hanna
Leitner, and Sylvia Cremer. “Frequent Horizontal Chromosome Transfer between Asexual
Fungal Insect Pathogens.” Proceedings of the National Academy of Sciences of
the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2316284121.
ieee: M. Habig, A. V. Grasse, J. Müller, E. H. Stukenbrock, H. Leitner, and S. Cremer,
“Frequent horizontal chromosome transfer between asexual fungal insect pathogens,”
Proceedings of the National Academy of Sciences of the United States of America,
vol. 121, no. 11. National Academy of Sciences, 2024.
ista: Habig M, Grasse AV, Müller J, Stukenbrock EH, Leitner H, Cremer S. 2024. Frequent
horizontal chromosome transfer between asexual fungal insect pathogens. Proceedings
of the National Academy of Sciences of the United States of America. 121(11),
e2316284121.
mla: Habig, Michael, et al. “Frequent Horizontal Chromosome Transfer between Asexual
Fungal Insect Pathogens.” Proceedings of the National Academy of Sciences of
the United States of America, vol. 121, no. 11, e2316284121, National Academy
of Sciences, 2024, doi:10.1073/pnas.2316284121.
short: M. Habig, A.V. Grasse, J. Müller, E.H. Stukenbrock, H. Leitner, S. Cremer,
Proceedings of the National Academy of Sciences of the United States of America
121 (2024).
corr_author: '1'
date_created: 2023-10-31T13:30:00Z
date_published: 2024-03-12T00:00:00Z
date_updated: 2025-08-05T13:30:51Z
day: '12'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.1073/pnas.2316284121
ec_funded: 1
external_id:
isi:
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pmid:
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intvolume: ' 121'
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issue: '11'
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license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2649B4DE-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '771402'
name: Epidemics in ant societies on a chip
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
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title: Frequent horizontal chromosome transfer between asexual fungal insect pathogens
tmp:
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legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 121
year: '2024'
...
---
_id: '14479'
abstract:
- lang: eng
text: 'In animals, parasitic infections impose significant fitness costs.1,2,3,4,5,6
Infected animals can alter their feeding behavior to resist infection,7,8,9,10,11,12
but parasites can manipulate animal foraging behavior to their own benefits.13,14,15,16
How nutrition influences host-parasite interactions is not well understood, as
studies have mainly focused on the host and less on the parasite.9,12,17,18,19,20,21,22,23
We used the nutritional geometry framework24 to investigate the role of amino
acids (AA) and carbohydrates (C) in a host-parasite system: the Argentine ant,
Linepithema humile, and the entomopathogenic fungus, Metarhizium brunneum. First,
using 18 diets varying in AA:C composition, we established that the fungus performed
best on the high-amino-acid diet 1:4. Second, we found that the fungus reached
this optimal diet when given various diet pairings, revealing its ability to cope
with nutritional challenges. Third, we showed that the optimal fungal diet reduced
the lifespan of healthy ants when compared with a high-carbohydrate diet but had
no effect on infected ants. Fourth, we revealed that infected ant colonies, given
a choice between the optimal fungal diet and a high-carbohydrate diet, chose the
optimal fungal diet, whereas healthy colonies avoided it. Lastly, by disentangling
fungal infection from host immune response, we demonstrated that infected ants
foraged on the optimal fungal diet in response to immune activation and not as
a result of parasite manipulation. Therefore, we revealed that infected ant colonies
chose a diet that is costly for survival in the long term but beneficial in the
short term—a form of collective self-medication.'
acknowledgement: We are sincerely grateful to the referees for their valuable comments
and suggestions, which helped us to improve the paper. We are thankful to Jorgen
Eilenberg and Nicolai V. Meyling for the fungal strain, to Simon Tragust, Abel Bernadou,
and Brian Lazarro for insightful discussions, to Iago Sanmartín-Villar, Léa Briard,
Céline Maitrel, and Nolwenn Rissen for their help with the experiments. Furthermore,
we thank Anna V. Grasse for help with the immune gene expression analyses. We thank
Sergio Ibarra for creating the graphical abstract. E.C. was supported by a Fyssen
Foundation grant and the Alexander von Humboldt Foundation. A.D. was supported by
the CNRS.
article_processing_charge: No
article_type: original
author:
- first_name: Eniko
full_name: Csata, Eniko
last_name: Csata
- first_name: Alfonso
full_name: Perez-Escudero, Alfonso
last_name: Perez-Escudero
- first_name: Emmanuel
full_name: Laury, Emmanuel
last_name: Laury
- first_name: Hanna
full_name: Leitner, Hanna
id: 8fc5c6f6-5903-11ec-abad-c83f046253e7
last_name: Leitner
- first_name: Gerard
full_name: Latil, Gerard
last_name: Latil
- first_name: Juerge
full_name: Heinze, Juerge
last_name: Heinze
- first_name: Stephen
full_name: Simpson, Stephen
last_name: Simpson
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
- first_name: Audrey
full_name: Dussutour, Audrey
last_name: Dussutour
citation:
ama: Csata E, Perez-Escudero A, Laury E, et al. Fungal infection alters collective
nutritional intake of ant colonies. Current Biology. 2024;34(4):902-909.e6.
doi:10.1016/j.cub.2024.01.017
apa: Csata, E., Perez-Escudero, A., Laury, E., Leitner, H., Latil, G., Heinze, J.,
… Dussutour, A. (2024). Fungal infection alters collective nutritional intake
of ant colonies. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2024.01.017
chicago: Csata, Eniko, Alfonso Perez-Escudero, Emmanuel Laury, Hanna Leitner, Gerard
Latil, Juerge Heinze, Stephen Simpson, Sylvia Cremer, and Audrey Dussutour. “Fungal
Infection Alters Collective Nutritional Intake of Ant Colonies.” Current Biology.
Elsevier, 2024. https://doi.org/10.1016/j.cub.2024.01.017.
ieee: E. Csata et al., “Fungal infection alters collective nutritional intake
of ant colonies,” Current Biology, vol. 34, no. 4. Elsevier, p. 902–909.e6,
2024.
ista: Csata E, Perez-Escudero A, Laury E, Leitner H, Latil G, Heinze J, Simpson
S, Cremer S, Dussutour A. 2024. Fungal infection alters collective nutritional
intake of ant colonies. Current Biology. 34(4), 902–909.e6.
mla: Csata, Eniko, et al. “Fungal Infection Alters Collective Nutritional Intake
of Ant Colonies.” Current Biology, vol. 34, no. 4, Elsevier, 2024, p. 902–909.e6,
doi:10.1016/j.cub.2024.01.017.
short: E. Csata, A. Perez-Escudero, E. Laury, H. Leitner, G. Latil, J. Heinze, S.
Simpson, S. Cremer, A. Dussutour, Current Biology 34 (2024) 902–909.e6.
date_created: 2023-10-31T13:30:20Z
date_published: 2024-02-26T00:00:00Z
date_updated: 2025-08-05T13:29:38Z
day: '26'
department:
- _id: SyCr
doi: 10.1016/j.cub.2024.01.017
external_id:
isi:
- '001195884300001'
pmid:
- '38307022'
intvolume: ' 34'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
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url: https://doi.org/10.1101/2023.10.26.564092
month: '02'
oa: 1
oa_version: Preprint
page: 902-909.e6
pmid: 1
publication: Current Biology
publication_identifier:
eissn:
- 1879-0445
issn:
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publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fungal infection alters collective nutritional intake of ant colonies
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2024'
...
---
_id: '14488'
abstract:
- lang: eng
text: 'Portrait viewpoint and illumination editing is an important problem with
several applications in VR/AR, movies, and photography. Comprehensive knowledge
of geometry and illumination is critical for obtaining photorealistic results.
Current methods are unable to explicitly model in 3D while handling both viewpoint
and illumination editing from a single image. In this paper, we propose VoRF,
a novel approach that can take even a single portrait image as input and relight
human heads under novel illuminations that can be viewed from arbitrary viewpoints.
VoRF represents a human head as a continuous volumetric field and learns a prior
model of human heads using a coordinate-based MLP with individual latent spaces
for identity and illumination. The prior model is learned in an auto-decoder manner
over a diverse class of head shapes and appearances, allowing VoRF to generalize
to novel test identities from a single input image. Additionally, VoRF has a reflectance
MLP that uses the intermediate features of the prior model for rendering One-Light-at-A-Time
(OLAT) images under novel views. We synthesize novel illuminations by combining
these OLAT images with target environment maps. Qualitative and quantitative evaluations
demonstrate the effectiveness of VoRF for relighting and novel view synthesis,
even when applied to unseen subjects under uncontrolled illumination. This work
is an extension of Rao et al. (VoRF: Volumetric Relightable Faces 2022). We provide
extensive evaluation and ablative studies of our model and also provide an application,
where any face can be relighted using textual input.'
acknowledgement: Open Access funding enabled and organized by Projekt DEAL.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Pramod
full_name: Rao, Pramod
last_name: Rao
- first_name: B. R.
full_name: Mallikarjun, B. R.
last_name: Mallikarjun
- first_name: Gereon
full_name: Fox, Gereon
last_name: Fox
- first_name: Tim
full_name: Weyrich, Tim
last_name: Weyrich
- first_name: Bernd
full_name: Bickel, Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
- first_name: Hanspeter
full_name: Pfister, Hanspeter
last_name: Pfister
- first_name: Wojciech
full_name: Matusik, Wojciech
last_name: Matusik
- first_name: Fangneng
full_name: Zhan, Fangneng
last_name: Zhan
- first_name: Ayush
full_name: Tewari, Ayush
last_name: Tewari
- first_name: Christian
full_name: Theobalt, Christian
last_name: Theobalt
- first_name: Mohamed
full_name: Elgharib, Mohamed
last_name: Elgharib
citation:
ama: Rao P, Mallikarjun BR, Fox G, et al. A deeper analysis of volumetric relightiable
faces. International Journal of Computer Vision. 2024;132:1148-1166. doi:10.1007/s11263-023-01899-3
apa: Rao, P., Mallikarjun, B. R., Fox, G., Weyrich, T., Bickel, B., Pfister, H.,
… Elgharib, M. (2024). A deeper analysis of volumetric relightiable faces. International
Journal of Computer Vision. Springer Nature. https://doi.org/10.1007/s11263-023-01899-3
chicago: Rao, Pramod, B. R. Mallikarjun, Gereon Fox, Tim Weyrich, Bernd Bickel,
Hanspeter Pfister, Wojciech Matusik, et al. “A Deeper Analysis of Volumetric Relightiable
Faces.” International Journal of Computer Vision. Springer Nature, 2024.
https://doi.org/10.1007/s11263-023-01899-3.
ieee: P. Rao et al., “A deeper analysis of volumetric relightiable faces,”
International Journal of Computer Vision, vol. 132. Springer Nature, pp.
1148–1166, 2024.
ista: Rao P, Mallikarjun BR, Fox G, Weyrich T, Bickel B, Pfister H, Matusik W, Zhan
F, Tewari A, Theobalt C, Elgharib M. 2024. A deeper analysis of volumetric relightiable
faces. International Journal of Computer Vision. 132, 1148–1166.
mla: Rao, Pramod, et al. “A Deeper Analysis of Volumetric Relightiable Faces.” International
Journal of Computer Vision, vol. 132, Springer Nature, 2024, pp. 1148–66,
doi:10.1007/s11263-023-01899-3.
short: P. Rao, B.R. Mallikarjun, G. Fox, T. Weyrich, B. Bickel, H. Pfister, W. Matusik,
F. Zhan, A. Tewari, C. Theobalt, M. Elgharib, International Journal of Computer
Vision 132 (2024) 1148–1166.
date_created: 2023-11-05T23:00:54Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2025-08-05T13:28:58Z
day: '01'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1007/s11263-023-01899-3
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- '38549787'
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oa_version: Published Version
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pmid: 1
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issn:
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title: A deeper analysis of volumetric relightiable faces
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 132
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '14542'
abstract:
- lang: eng
text: "It is a remarkable property of BCS theory that the ratio of the energy gap
at zero temperature Ξ\r\n and the critical temperature Tc is (approximately) given
by a universal constant, independent of the microscopic details of the fermionic
interaction. This universality has rigorously been proven quite recently in three
spatial dimensions and three different limiting regimes: weak coupling, low density
and high density. The goal of this short note is to extend the universal behavior
to lower dimensions d=1,2 and give an exemplary proof in the weak coupling limit."
acknowledgement: We thank Robert Seiringer for comments on the paper. J. H. gratefully
acknowledges partial financial support by the ERC Advanced Grant “RMTBeyond”No.
101020331.This research was funded in part by the Austrian Science Fund (FWF) grantnumber
I6427.
article_number: '2360005 '
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Sven Joscha
full_name: Henheik, Sven Joscha
id: 31d731d7-d235-11ea-ad11-b50331c8d7fb
last_name: Henheik
orcid: 0000-0003-1106-327X
- first_name: Asbjørn Bækgaard
full_name: Lauritsen, Asbjørn Bækgaard
id: e1a2682f-dc8d-11ea-abe3-81da9ac728f1
last_name: Lauritsen
orcid: 0000-0003-4476-2288
- first_name: Barbara
full_name: Roos, Barbara
id: 5DA90512-D80F-11E9-8994-2E2EE6697425
last_name: Roos
orcid: 0000-0002-9071-5880
citation:
ama: Henheik SJ, Lauritsen AB, Roos B. Universality in low-dimensional BCS theory.
Reviews in Mathematical Physics. 2024;36(9). doi:10.1142/s0129055x2360005x
apa: Henheik, S. J., Lauritsen, A. B., & Roos, B. (2024). Universality in low-dimensional
BCS theory. Reviews in Mathematical Physics. World Scientific Publishing.
https://doi.org/10.1142/s0129055x2360005x
chicago: Henheik, Sven Joscha, Asbjørn Bækgaard Lauritsen, and Barbara Roos. “Universality
in Low-Dimensional BCS Theory.” Reviews in Mathematical Physics. World
Scientific Publishing, 2024. https://doi.org/10.1142/s0129055x2360005x.
ieee: S. J. Henheik, A. B. Lauritsen, and B. Roos, “Universality in low-dimensional
BCS theory,” Reviews in Mathematical Physics, vol. 36, no. 9. World Scientific
Publishing, 2024.
ista: Henheik SJ, Lauritsen AB, Roos B. 2024. Universality in low-dimensional BCS
theory. Reviews in Mathematical Physics. 36(9), 2360005.
mla: Henheik, Sven Joscha, et al. “Universality in Low-Dimensional BCS Theory.”
Reviews in Mathematical Physics, vol. 36, no. 9, 2360005, World Scientific
Publishing, 2024, doi:10.1142/s0129055x2360005x.
short: S.J. Henheik, A.B. Lauritsen, B. Roos, Reviews in Mathematical Physics 36
(2024).
corr_author: '1'
date_created: 2023-11-15T23:48:14Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2026-04-07T13:01:40Z
day: '01'
ddc:
- '510'
department:
- _id: GradSch
- _id: LaEr
- _id: RoSe
doi: 10.1142/s0129055x2360005x
ec_funded: 1
external_id:
arxiv:
- '2301.05621'
isi:
- '001099640300002'
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file_name: 2024_ReviewsmathPhysics_Henheik.pdf
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relation: main_file
success: 1
file_date_updated: 2025-01-09T07:56:28Z
has_accepted_license: '1'
intvolume: ' 36'
isi: 1
issue: '9'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
call_identifier: H2020
grant_number: '101020331'
name: Random matrices beyond Wigner-Dyson-Mehta
- _id: bda63fe5-d553-11ed-ba76-a16e3d2f256b
grant_number: I06427
name: Mathematical Challenges in BCS Theory of Superconductivity
publication: Reviews in Mathematical Physics
publication_identifier:
eissn:
- 1793-6659
issn:
- 0129-055X
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
related_material:
record:
- id: '19540'
relation: dissertation_contains
status: public
- id: '18135'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Universality in low-dimensional BCS theory
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2024'
...
---
_id: '14543'
abstract:
- lang: eng
text: The acyl-CoA-binding domain-containing protein 6 (ACBD6) is ubiquitously expressed,
plays a role in the acylation of lipids and proteins, and regulates the N-myristoylation
of proteins via N-myristoyltransferase enzymes (NMTs). However, its precise function
in cells is still unclear, as is the consequence of ACBD6 defects on human pathophysiology.
Utilizing exome sequencing and extensive international data sharing efforts, we
identified 45 affected individuals from 28 unrelated families (consanguinity 93%)
with bi-allelic pathogenic, predominantly loss-of-function (18/20) variants in
ACBD6. We generated zebrafish and Xenopus tropicalis acbd6 knockouts by CRISPR/Cas9
and characterized the role of ACBD6 on protein N-myristoylation with YnMyr chemical
proteomics in the model organisms and human cells, with the latter also being
subjected further to ACBD6 peroxisomal localization studies. The affected individuals
(23 males and 22 females), with ages ranging from 1 to 50 years old, typically
present with a complex and progressive disease involving moderate-to-severe global
developmental delay/intellectual disability (100%) with significant expressive
language impairment (98%), movement disorders (97%), facial dysmorphism (95%),
and mild cerebellar ataxia (85%) associated with gait impairment (94%), limb spasticity/hypertonia
(76%), oculomotor (71%) and behavioural abnormalities (65%), overweight (59%),
microcephaly (39%) and epilepsy (33%). The most conspicuous and common movement
disorder was dystonia (94%), frequently leading to early-onset progressive postural
deformities (97%), limb dystonia (55%), and cervical dystonia (31%). A jerky tremor
in the upper limbs (63%), a mild head tremor (59%), parkinsonism/hypokinesia developing
with advancing age (32%), and simple motor and vocal tics were among other frequent
movement disorders. Midline brain malformations including corpus callosum abnormalities
(70%), hypoplasia/agenesis of the anterior commissure (66%), short midbrain and
small inferior cerebellar vermis (38% each), as well as hypertrophy of the clava
(24%) were common neuroimaging findings. acbd6-deficient zebrafish and Xenopus
models effectively recapitulated many clinical phenotypes reported in patients
including movement disorders, progressive neuromotor impairment, seizures, microcephaly,
craniofacial dysmorphism, and midbrain defects accompanied by developmental delay
with increased mortality over time. Unlike ACBD5, ACBD6 did not show a peroxisomal
localisation and ACBD6-deficiency was not associated with altered peroxisomal
parameters in patient fibroblasts. Significant differences in YnMyr-labelling
were observed for 68 co- and 18 post-translationally N-myristoylated proteins
in patient-derived fibroblasts. N-Myristoylation was similarly affected in acbd6-deficient
zebrafish and Xenopus tropicalis models, including Fus, Marcks, and Chchd-related
proteins implicated in neurological diseases. The present study provides evidence
that bi-allelic pathogenic variants in ACBD6 lead to a distinct neurodevelopmental
syndrome accompanied by complex and progressive cognitive and movement disorders.
article_processing_charge: No
article_type: original
author:
- first_name: Rauan
full_name: Kaiyrzhanov, Rauan
last_name: Kaiyrzhanov
- first_name: Aboulfazl
full_name: Rad, Aboulfazl
last_name: Rad
- first_name: Sheng-Jia
full_name: Lin, Sheng-Jia
last_name: Lin
- first_name: Aida
full_name: Bertoli-Avella, Aida
last_name: Bertoli-Avella
- first_name: Wouter W
full_name: Kallemeijn, Wouter W
last_name: Kallemeijn
- first_name: Annie
full_name: Godwin, Annie
last_name: Godwin
- first_name: Maha S
full_name: Zaki, Maha S
last_name: Zaki
- first_name: Kevin
full_name: Huang, Kevin
id: 3b3d2888-1ff6-11ee-9fa6-8f209ca91fe3
last_name: Huang
orcid: 0000-0002-2512-7812
- first_name: Tracy
full_name: Lau, Tracy
last_name: Lau
- first_name: Cassidy
full_name: Petree, Cassidy
last_name: Petree
- first_name: Stephanie
full_name: Efthymiou, Stephanie
last_name: Efthymiou
- first_name: Ehsan
full_name: Ghayoor Karimiani, Ehsan
last_name: Ghayoor Karimiani
- first_name: Maja
full_name: Hempel, Maja
last_name: Hempel
- first_name: Elizabeth A
full_name: Normand, Elizabeth A
last_name: Normand
- first_name: Sabine
full_name: Rudnik-Schöneborn, Sabine
last_name: Rudnik-Schöneborn
- first_name: Ulrich A
full_name: Schatz, Ulrich A
last_name: Schatz
- first_name: Marc P
full_name: Baggelaar, Marc P
last_name: Baggelaar
- first_name: Muhammad
full_name: Ilyas, Muhammad
last_name: Ilyas
- first_name: Tipu
full_name: Sultan, Tipu
last_name: Sultan
- first_name: Javeria Raza
full_name: Alvi, Javeria Raza
last_name: Alvi
- first_name: Manizha
full_name: Ganieva, Manizha
last_name: Ganieva
- first_name: Ben
full_name: Fowler, Ben
last_name: Fowler
- first_name: Ruxandra
full_name: Aanicai, Ruxandra
last_name: Aanicai
- first_name: Gulsen
full_name: Akay Tayfun, Gulsen
last_name: Akay Tayfun
- first_name: Abdulaziz
full_name: Al Saman, Abdulaziz
last_name: Al Saman
- first_name: Abdulrahman
full_name: Alswaid, Abdulrahman
last_name: Alswaid
- first_name: Nafise
full_name: Amiri, Nafise
last_name: Amiri
- first_name: Nilufar
full_name: Asilova, Nilufar
last_name: Asilova
- first_name: Vorasuk
full_name: Shotelersuk, Vorasuk
last_name: Shotelersuk
- first_name: Patra
full_name: Yeetong, Patra
last_name: Yeetong
- first_name: Matloob
full_name: Azam, Matloob
last_name: Azam
- first_name: Meisam
full_name: Babaei, Meisam
last_name: Babaei
- first_name: Gholamreza
full_name: Bahrami Monajemi, Gholamreza
last_name: Bahrami Monajemi
- first_name: Pouria
full_name: Mohammadi, Pouria
last_name: Mohammadi
- first_name: Saeed
full_name: Samie, Saeed
last_name: Samie
- first_name: Selina Husna
full_name: Banu, Selina Husna
last_name: Banu
- first_name: Jorge Pinto
full_name: Basto, Jorge Pinto
last_name: Basto
- first_name: Fanny
full_name: Kortüm, Fanny
last_name: Kortüm
- first_name: Mislen
full_name: Bauer, Mislen
last_name: Bauer
- first_name: Peter
full_name: Bauer, Peter
last_name: Bauer
- first_name: Christian
full_name: Beetz, Christian
last_name: Beetz
- first_name: Masoud
full_name: Garshasbi, Masoud
last_name: Garshasbi
- first_name: Awatif
full_name: Hameed Issa, Awatif
last_name: Hameed Issa
- first_name: Wafaa
full_name: Eyaid, Wafaa
last_name: Eyaid
- first_name: Hind
full_name: Ahmed, Hind
last_name: Ahmed
- first_name: Narges
full_name: Hashemi, Narges
last_name: Hashemi
- first_name: Kazem
full_name: Hassanpour, Kazem
last_name: Hassanpour
- first_name: Isabella
full_name: Herman, Isabella
last_name: Herman
- first_name: Sherozjon
full_name: Ibrohimov, Sherozjon
last_name: Ibrohimov
- first_name: Ban A
full_name: Abdul-Majeed, Ban A
last_name: Abdul-Majeed
- first_name: Maria
full_name: Imdad, Maria
last_name: Imdad
- first_name: Maksudjon
full_name: Isrofilov, Maksudjon
last_name: Isrofilov
- first_name: Qassem
full_name: Kaiyal, Qassem
last_name: Kaiyal
- first_name: Suliman
full_name: Khan, Suliman
last_name: Khan
- first_name: Brian
full_name: Kirmse, Brian
last_name: Kirmse
- first_name: Janet
full_name: Koster, Janet
last_name: Koster
- first_name: Charles Marques
full_name: Lourenço, Charles Marques
last_name: Lourenço
- first_name: Tadahiro
full_name: Mitani, Tadahiro
last_name: Mitani
- first_name: Oana
full_name: Moldovan, Oana
last_name: Moldovan
- first_name: David
full_name: Murphy, David
last_name: Murphy
- first_name: Maryam
full_name: Najafi, Maryam
last_name: Najafi
- first_name: Davut
full_name: Pehlivan, Davut
last_name: Pehlivan
- first_name: Maria Eugenia
full_name: Rocha, Maria Eugenia
last_name: Rocha
- first_name: Vincenzo
full_name: Salpietro, Vincenzo
last_name: Salpietro
- first_name: Miriam
full_name: Schmidts, Miriam
last_name: Schmidts
- first_name: Adel
full_name: Shalata, Adel
last_name: Shalata
- first_name: Mohammad
full_name: Mahroum, Mohammad
last_name: Mahroum
- first_name: Jawabreh Kassem
full_name: Talbeya, Jawabreh Kassem
last_name: Talbeya
- first_name: Robert W
full_name: Taylor, Robert W
last_name: Taylor
- first_name: Dayana
full_name: Vazquez, Dayana
last_name: Vazquez
- first_name: Annalisa
full_name: Vetro, Annalisa
last_name: Vetro
- first_name: Hans R
full_name: Waterham, Hans R
last_name: Waterham
- first_name: Mashaya
full_name: Zaman, Mashaya
last_name: Zaman
- first_name: Tina A
full_name: Schrader, Tina A
last_name: Schrader
- first_name: Wendy K
full_name: Chung, Wendy K
last_name: Chung
- first_name: Renzo
full_name: Guerrini, Renzo
last_name: Guerrini
- first_name: James R
full_name: Lupski, James R
last_name: Lupski
- first_name: Joseph
full_name: Gleeson, Joseph
last_name: Gleeson
- first_name: Mohnish
full_name: Suri, Mohnish
last_name: Suri
- first_name: Yalda
full_name: Jamshidi, Yalda
last_name: Jamshidi
- first_name: Kailash P
full_name: Bhatia, Kailash P
last_name: Bhatia
- first_name: Barbara
full_name: Vona, Barbara
last_name: Vona
- first_name: Michael
full_name: Schrader, Michael
last_name: Schrader
- first_name: Mariasavina
full_name: Severino, Mariasavina
last_name: Severino
- first_name: Matthew
full_name: Guille, Matthew
last_name: Guille
- first_name: Edward W
full_name: Tate, Edward W
last_name: Tate
- first_name: Gaurav K
full_name: Varshney, Gaurav K
last_name: Varshney
- first_name: Henry
full_name: Houlden, Henry
last_name: Houlden
- first_name: Reza
full_name: Maroofian, Reza
last_name: Maroofian
citation:
ama: Kaiyrzhanov R, Rad A, Lin S-J, et al. Bi-allelic ACBD6 variants lead to a neurodevelopmental
syndrome with progressive and complex movement disorders. Brain. 2024;147(4):1436-1456.
doi:10.1093/brain/awad380
apa: Kaiyrzhanov, R., Rad, A., Lin, S.-J., Bertoli-Avella, A., Kallemeijn, W. W.,
Godwin, A., … Maroofian, R. (2024). Bi-allelic ACBD6 variants lead to a neurodevelopmental
syndrome with progressive and complex movement disorders. Brain. Oxford
University Press. https://doi.org/10.1093/brain/awad380
chicago: Kaiyrzhanov, Rauan, Aboulfazl Rad, Sheng-Jia Lin, Aida Bertoli-Avella,
Wouter W Kallemeijn, Annie Godwin, Maha S Zaki, et al. “Bi-Allelic ACBD6 Variants
Lead to a Neurodevelopmental Syndrome with Progressive and Complex Movement Disorders.”
Brain. Oxford University Press, 2024. https://doi.org/10.1093/brain/awad380.
ieee: R. Kaiyrzhanov et al., “Bi-allelic ACBD6 variants lead to a neurodevelopmental
syndrome with progressive and complex movement disorders,” Brain, vol.
147, no. 4. Oxford University Press, pp. 1436–1456, 2024.
ista: Kaiyrzhanov R, Rad A, Lin S-J, Bertoli-Avella A, Kallemeijn WW, Godwin A,
Zaki MS, Huang K, Lau T, Petree C, Efthymiou S, Ghayoor Karimiani E, Hempel M,
Normand EA, Rudnik-Schöneborn S, Schatz UA, Baggelaar MP, Ilyas M, Sultan T, Alvi
JR, Ganieva M, Fowler B, Aanicai R, Akay Tayfun G, Al Saman A, Alswaid A, Amiri
N, Asilova N, Shotelersuk V, Yeetong P, Azam M, Babaei M, Bahrami Monajemi G,
Mohammadi P, Samie S, Banu SH, Basto JP, Kortüm F, Bauer M, Bauer P, Beetz C,
Garshasbi M, Hameed Issa A, Eyaid W, Ahmed H, Hashemi N, Hassanpour K, Herman
I, Ibrohimov S, Abdul-Majeed BA, Imdad M, Isrofilov M, Kaiyal Q, Khan S, Kirmse
B, Koster J, Lourenço CM, Mitani T, Moldovan O, Murphy D, Najafi M, Pehlivan D,
Rocha ME, Salpietro V, Schmidts M, Shalata A, Mahroum M, Talbeya JK, Taylor RW,
Vazquez D, Vetro A, Waterham HR, Zaman M, Schrader TA, Chung WK, Guerrini R, Lupski
JR, Gleeson J, Suri M, Jamshidi Y, Bhatia KP, Vona B, Schrader M, Severino M,
Guille M, Tate EW, Varshney GK, Houlden H, Maroofian R. 2024. Bi-allelic ACBD6
variants lead to a neurodevelopmental syndrome with progressive and complex movement
disorders. Brain. 147(4), 1436–1456.
mla: Kaiyrzhanov, Rauan, et al. “Bi-Allelic ACBD6 Variants Lead to a Neurodevelopmental
Syndrome with Progressive and Complex Movement Disorders.” Brain, vol.
147, no. 4, Oxford University Press, 2024, pp. 1436–56, doi:10.1093/brain/awad380.
short: R. Kaiyrzhanov, A. Rad, S.-J. Lin, A. Bertoli-Avella, W.W. Kallemeijn, A.
Godwin, M.S. Zaki, K. Huang, T. Lau, C. Petree, S. Efthymiou, E. Ghayoor Karimiani,
M. Hempel, E.A. Normand, S. Rudnik-Schöneborn, U.A. Schatz, M.P. Baggelaar, M.
Ilyas, T. Sultan, J.R. Alvi, M. Ganieva, B. Fowler, R. Aanicai, G. Akay Tayfun,
A. Al Saman, A. Alswaid, N. Amiri, N. Asilova, V. Shotelersuk, P. Yeetong, M.
Azam, M. Babaei, G. Bahrami Monajemi, P. Mohammadi, S. Samie, S.H. Banu, J.P.
Basto, F. Kortüm, M. Bauer, P. Bauer, C. Beetz, M. Garshasbi, A. Hameed Issa,
W. Eyaid, H. Ahmed, N. Hashemi, K. Hassanpour, I. Herman, S. Ibrohimov, B.A. Abdul-Majeed,
M. Imdad, M. Isrofilov, Q. Kaiyal, S. Khan, B. Kirmse, J. Koster, C.M. Lourenço,
T. Mitani, O. Moldovan, D. Murphy, M. Najafi, D. Pehlivan, M.E. Rocha, V. Salpietro,
M. Schmidts, A. Shalata, M. Mahroum, J.K. Talbeya, R.W. Taylor, D. Vazquez, A.
Vetro, H.R. Waterham, M. Zaman, T.A. Schrader, W.K. Chung, R. Guerrini, J.R. Lupski,
J. Gleeson, M. Suri, Y. Jamshidi, K.P. Bhatia, B. Vona, M. Schrader, M. Severino,
M. Guille, E.W. Tate, G.K. Varshney, H. Houlden, R. Maroofian, Brain 147 (2024)
1436–1456.
date_created: 2023-11-16T12:36:51Z
date_published: 2024-04-01T00:00:00Z
date_updated: 2024-07-16T08:23:24Z
day: '01'
ddc:
- '570'
department:
- _id: GradSch
doi: 10.1093/brain/awad380
extern: '1'
external_id:
pmid:
- '37951597'
file:
- access_level: open_access
checksum: 0ee7a8ab9300225d60968f7a3e3cfa0d
content_type: application/pdf
creator: dernst
date_created: 2024-07-16T08:22:13Z
date_updated: 2024-07-16T08:22:13Z
file_id: '17254'
file_name: 2024_Brain_Kaiyrzhanov.pdf
file_size: 2641456
relation: main_file
success: 1
file_date_updated: 2024-07-16T08:22:13Z
has_accepted_license: '1'
intvolume: ' 147'
issue: '4'
keyword:
- Neurology (clinical)
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 1436-1456
pmid: 1
publication: Brain
publication_identifier:
eissn:
- 1460-2156
issn:
- 0006-8950
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive
and complex movement disorders
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 147
year: '2024'
...
---
_id: '14652'
abstract:
- lang: eng
text: In order to demonstrate the stability of newly proposed iridium-based Ir2Cr(In,Sn)
and IrRhCr(In,Sn) heusler alloys, we present ab-initio analysis of these alloys
by examining various properties to prove their stability. The stability of these
alloys can be inferred from different cohesive and formation energies as well
as positive phonon frequencies. Their electronic structure results indicate that
they are semi-metals in nature. The magnetic moments are computed using the Slater-Pauling
formula and exhibit a high value, with the Cr atom contributing the most in all
alloys. Mulliken’s charge analysis results show that our alloys contain a range
of linkages, mainly ionic and covalent ones. The ductility and mechanical stability
of these alloys are confirmed by elastic constants viz. Poisson’s ratio, Pugh’s
ratio, and many different types of elastic moduli.
article_number: '415539'
article_processing_charge: No
article_type: original
author:
- first_name: Shyam Lal
full_name: Gupta, Shyam Lal
last_name: Gupta
- first_name: Saurabh
full_name: Singh, Saurabh
id: 12d625da-9cb3-11ed-9667-af09d37d3f0a
last_name: Singh
orcid: 0000-0003-2209-5269
- first_name: Sumit
full_name: Kumar, Sumit
last_name: Kumar
- first_name: Unknown
full_name: Anupam, Unknown
last_name: Anupam
- first_name: Samjeet Singh
full_name: Thakur, Samjeet Singh
last_name: Thakur
- first_name: Ashish
full_name: Kumar, Ashish
last_name: Kumar
- first_name: Sanjay
full_name: Panwar, Sanjay
last_name: Panwar
- first_name: D.
full_name: Diwaker, D.
last_name: Diwaker
citation:
ama: 'Gupta SL, Singh S, Kumar S, et al. Ab-initio stability of Iridium based newly
proposed full and quaternary heusler alloys. Physica B: Condensed Matter.
2024;674(2). doi:10.1016/j.physb.2023.415539'
apa: 'Gupta, S. L., Singh, S., Kumar, S., Anupam, U., Thakur, S. S., Kumar, A.,
… Diwaker, D. (2024). Ab-initio stability of Iridium based newly proposed full
and quaternary heusler alloys. Physica B: Condensed Matter. Elsevier. https://doi.org/10.1016/j.physb.2023.415539'
chicago: 'Gupta, Shyam Lal, Saurabh Singh, Sumit Kumar, Unknown Anupam, Samjeet
Singh Thakur, Ashish Kumar, Sanjay Panwar, and D. Diwaker. “Ab-Initio Stability
of Iridium Based Newly Proposed Full and Quaternary Heusler Alloys.” Physica
B: Condensed Matter. Elsevier, 2024. https://doi.org/10.1016/j.physb.2023.415539.'
ieee: 'S. L. Gupta et al., “Ab-initio stability of Iridium based newly proposed
full and quaternary heusler alloys,” Physica B: Condensed Matter, vol.
674, no. 2. Elsevier, 2024.'
ista: 'Gupta SL, Singh S, Kumar S, Anupam U, Thakur SS, Kumar A, Panwar S, Diwaker
D. 2024. Ab-initio stability of Iridium based newly proposed full and quaternary
heusler alloys. Physica B: Condensed Matter. 674(2), 415539.'
mla: 'Gupta, Shyam Lal, et al. “Ab-Initio Stability of Iridium Based Newly Proposed
Full and Quaternary Heusler Alloys.” Physica B: Condensed Matter, vol.
674, no. 2, 415539, Elsevier, 2024, doi:10.1016/j.physb.2023.415539.'
short: 'S.L. Gupta, S. Singh, S. Kumar, U. Anupam, S.S. Thakur, A. Kumar, S. Panwar,
D. Diwaker, Physica B: Condensed Matter 674 (2024).'
date_created: 2023-12-10T23:00:56Z
date_published: 2024-02-01T00:00:00Z
date_updated: 2025-09-04T11:29:46Z
day: '01'
department:
- _id: MaIb
doi: 10.1016/j.physb.2023.415539
external_id:
isi:
- '001127429000001'
intvolume: ' 674'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa_version: None
publication: 'Physica B: Condensed Matter'
publication_identifier:
issn:
- 0921-4526
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ab-initio stability of Iridium based newly proposed full and quaternary heusler
alloys
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 674
year: '2024'
...
---
_id: '14653'
abstract:
- lang: eng
text: 'Mass spectrometry imaging (MSI) is a powerful analytical technique for the
two-dimensional (2D) localization of chemicals on surfaces. Conventional MSI experiments
require to predefine the surface of interest based on photographic or microscopic
images. Typically, these boundaries can no longer be changed or adjusted once
the experiment has been started. In terms of a more interactive approach we recently
developed a pen-like ionization interface which is directly connected to the mass
spectrometer. The device allows the user to ionize chemicals by desorption electrospray
ionization (DESI) and to freely move the interface over a surface of interest.
A mini camera, which is mounted on the tip of the pen, magnifies the desorption
area and enables a simple positioning of the pen. The combination of optical data
from the camera module and chemical data obtained by mass analysis facilitates
a novel type of imaging experiment: interactive mass spectrometry imaging (IMSI).
For this application, we present a novel approach for a robust, optical flow-based
motion detection. While the live video stream from the camera is used to track
the pen''s motion across the surface a post-acquisition algorithm correlates the
coordinates of the pen trajectory with respective mass spectra obtained from a
simultaneous mass spectrometric data acquisition. This algorithm is no longer
dependent on a single, manually applied optical marker on the sample surface,
which has to be visible on all video frames throughout the analysis. The advanced
DESI-IMSI method was successfully tested on inkjet-printed letters as well as
mouse brain tissue samples. Validation of the results was done by comparing DESI-IMSI
with standard DESI-MSI data.'
acknowledgement: We would like to thank Marco Sealey Cardona, PhD for help with the
mouse brain samples and acknowledge the financial support by 1669 Förderkreis of
the University of Innsbruck, Austria Wirtschaftsservice (AWS), D. Swarovski KG and
Tyrolean Science Fund (TWF).
article_number: '117168'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Florian
full_name: Kluibenschedl, Florian
id: 7499e70e-eb2c-11ec-b98b-f925648bc9d9
last_name: Kluibenschedl
- first_name: Anna
full_name: Ploner, Anna
last_name: Ploner
- first_name: Christina
full_name: Meisenbichler, Christina
last_name: Meisenbichler
- first_name: Robert
full_name: Konrat, Robert
last_name: Konrat
- first_name: Thomas
full_name: Müller, Thomas
last_name: Müller
citation:
ama: Kluibenschedl F, Ploner A, Meisenbichler C, Konrat R, Müller T. Advanced motion
tracking for interactive mass spectrometry imaging (IMSI). International Journal
of Mass Spectrometry. 2024;495. doi:10.1016/j.ijms.2023.117168
apa: Kluibenschedl, F., Ploner, A., Meisenbichler, C., Konrat, R., & Müller,
T. (2024). Advanced motion tracking for interactive mass spectrometry imaging
(IMSI). International Journal of Mass Spectrometry. Elsevier. https://doi.org/10.1016/j.ijms.2023.117168
chicago: Kluibenschedl, Florian, Anna Ploner, Christina Meisenbichler, Robert Konrat,
and Thomas Müller. “Advanced Motion Tracking for Interactive Mass Spectrometry
Imaging (IMSI).” International Journal of Mass Spectrometry. Elsevier,
2024. https://doi.org/10.1016/j.ijms.2023.117168.
ieee: F. Kluibenschedl, A. Ploner, C. Meisenbichler, R. Konrat, and T. Müller, “Advanced
motion tracking for interactive mass spectrometry imaging (IMSI),” International
Journal of Mass Spectrometry, vol. 495. Elsevier, 2024.
ista: Kluibenschedl F, Ploner A, Meisenbichler C, Konrat R, Müller T. 2024. Advanced
motion tracking for interactive mass spectrometry imaging (IMSI). International
Journal of Mass Spectrometry. 495, 117168.
mla: Kluibenschedl, Florian, et al. “Advanced Motion Tracking for Interactive Mass
Spectrometry Imaging (IMSI).” International Journal of Mass Spectrometry,
vol. 495, 117168, Elsevier, 2024, doi:10.1016/j.ijms.2023.117168.
short: F. Kluibenschedl, A. Ploner, C. Meisenbichler, R. Konrat, T. Müller, International
Journal of Mass Spectrometry 495 (2024).
date_created: 2023-12-10T23:00:57Z
date_published: 2024-01-01T00:00:00Z
date_updated: 2025-09-04T11:30:59Z
day: '01'
ddc:
- '540'
department:
- _id: GradSch
doi: 10.1016/j.ijms.2023.117168
external_id:
isi:
- '001125054400001'
file:
- access_level: open_access
checksum: 6c5eb6dc07af70a59251d2c6fed38894
content_type: application/pdf
creator: dernst
date_created: 2024-07-16T08:27:34Z
date_updated: 2024-07-16T08:27:34Z
file_id: '17256'
file_name: 2024_IJMS_Kluibenschedl.pdf
file_size: 3003139
relation: main_file
success: 1
file_date_updated: 2024-07-16T08:27:34Z
has_accepted_license: '1'
intvolume: ' 495'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: International Journal of Mass Spectrometry
publication_identifier:
issn:
- 1387-3806
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Advanced motion tracking for interactive mass spectrometry imaging (IMSI)
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 495
year: '2024'
...
---
_id: '14660'
abstract:
- lang: eng
text: "The classical Steinitz theorem states that if the origin belongs to the interior
of the convex hull of a set \U0001D446⊂ℝ\U0001D451, then there are at most 2\U0001D451
points of \U0001D446 whose convex hull contains the origin in the interior. Bárány,
Katchalski,and Pach proved the following quantitative version of Steinitz’s theorem.
Let \U0001D444 be a convex polytope in ℝ\U0001D451 containing the standard Euclidean
unit ball \U0001D401\U0001D451. Then there exist at most 2\U0001D451 vertices
of \U0001D444 whose convex hull \U0001D444′ satisfies \U0001D45F\U0001D401\U0001D451⊂\U0001D444′
with \U0001D45F⩾\U0001D451−2\U0001D451. They conjectured that \U0001D45F⩾\U0001D450\U0001D451−1∕2
holds with a universal constant \U0001D450>0. We prove \U0001D45F⩾15\U0001D4512,
the first polynomial lower bound on \U0001D45F. Furthermore, we show that \U0001D45F
is not greater than 2/√\U0001D451."
acknowledgement: M.N. was supported by the János Bolyai Scholarship of the Hungarian
Academy of Sciences aswell as the National Research, Development and Innovation
Fund (NRDI) grants K119670 andK131529, and the ÚNKP-22-5 New National Excellence
Program of the Ministry for Innovationand Technology from the source of the NRDI
as well as the ELTE TKP 2021-NKTA-62 fundingscheme
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Grigory
full_name: Ivanov, Grigory
id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
last_name: Ivanov
- first_name: Márton
full_name: Naszódi, Márton
last_name: Naszódi
citation:
ama: 'Ivanov G, Naszódi M. Quantitative Steinitz theorem: A polynomial bound. Bulletin
of the London Mathematical Society. 2024;56(2):796-802. doi:10.1112/blms.12965'
apa: 'Ivanov, G., & Naszódi, M. (2024). Quantitative Steinitz theorem: A polynomial
bound. Bulletin of the London Mathematical Society. London Mathematical
Society. https://doi.org/10.1112/blms.12965'
chicago: 'Ivanov, Grigory, and Márton Naszódi. “Quantitative Steinitz Theorem: A
Polynomial Bound.” Bulletin of the London Mathematical Society. London
Mathematical Society, 2024. https://doi.org/10.1112/blms.12965.'
ieee: 'G. Ivanov and M. Naszódi, “Quantitative Steinitz theorem: A polynomial bound,”
Bulletin of the London Mathematical Society, vol. 56, no. 2. London Mathematical
Society, pp. 796–802, 2024.'
ista: 'Ivanov G, Naszódi M. 2024. Quantitative Steinitz theorem: A polynomial bound.
Bulletin of the London Mathematical Society. 56(2), 796–802.'
mla: 'Ivanov, Grigory, and Márton Naszódi. “Quantitative Steinitz Theorem: A Polynomial
Bound.” Bulletin of the London Mathematical Society, vol. 56, no. 2, London
Mathematical Society, 2024, pp. 796–802, doi:10.1112/blms.12965.'
short: G. Ivanov, M. Naszódi, Bulletin of the London Mathematical Society 56 (2024)
796–802.
corr_author: '1'
date_created: 2023-12-10T23:00:58Z
date_published: 2024-02-01T00:00:00Z
date_updated: 2025-09-04T11:31:49Z
day: '01'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.1112/blms.12965
external_id:
arxiv:
- '2212.04308'
isi:
- '001113277100001'
file:
- access_level: open_access
checksum: 30ea0694757bc668cf7cd15ae357b35e
content_type: application/pdf
creator: dernst
date_created: 2024-07-16T10:35:10Z
date_updated: 2024-07-16T10:35:10Z
file_id: '17259'
file_name: 2024_BulletinLondonMathSoc_Ivanov.pdf
file_size: 111756
relation: main_file
success: 1
file_date_updated: 2024-07-16T10:35:10Z
has_accepted_license: '1'
intvolume: ' 56'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 796-802
publication: Bulletin of the London Mathematical Society
publication_identifier:
eissn:
- 1469-2120
issn:
- 0024-6093
publication_status: published
publisher: London Mathematical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Quantitative Steinitz theorem: A polynomial bound'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 56
year: '2024'
...
---
_id: '14665'
abstract:
- lang: eng
text: We derive lower bounds on the maximal rates for multiple packings in high-dimensional
Euclidean spaces. For any N > 0 and L ∈ Z ≥2 , a multiple packing is a set C of
points in R n such that any point in R n lies in the intersection of at most L
- 1 balls of radius √ nN around points in C . This is a natural generalization
of the sphere packing problem. We study the multiple packing problem for both
bounded point sets whose points have norm at most √ nP for some constant P > 0,
and unbounded point sets whose points are allowed to be anywhere in R n . Given
a well-known connection with coding theory, multiple packings can be viewed as
the Euclidean analog of list-decodable codes, which are well-studied over finite
fields. We derive the best known lower bounds on the optimal multiple packing
density. This is accomplished by establishing an inequality which relates the
list-decoding error exponent for additive white Gaussian noise channels, a quantity
of average-case nature, to the list-decoding radius, a quantity of worst-case
nature. We also derive novel bounds on the list-decoding error exponent for infinite
constellations and closed-form expressions for the list-decoding error exponents
for the power-constrained AWGN channel, which may be of independent interest beyond
multiple packing.
acknowledgement: "The work of Yihan Zhang was supported by the European Union’s Horizon
2020 Research and Innovation Programme under Grant 682203-ERC-[Inf-Speed-Tradeoff].
The work of Shashank Vatedka was supported in part by the Core Research Grant from
the Science and\r\nEngineering Research Board, India, under Grant CRG/2022/004464;
and in\r\npart by the Department of Science and Technology (DST), India, under Grant\r\nDST/INT/RUS/RSF/P-41/2020
(TPN No. 65025)."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Yihan
full_name: Zhang, Yihan
id: 2ce5da42-b2ea-11eb-bba5-9f264e9d002c
last_name: Zhang
orcid: 0000-0002-6465-6258
- first_name: Shashank
full_name: Vatedka, Shashank
last_name: Vatedka
citation:
ama: 'Zhang Y, Vatedka S. Multiple packing: Lower bounds via error exponents. IEEE
Transactions on Information Theory. 2024;70(2):1008-1039. doi:10.1109/TIT.2023.3334032'
apa: 'Zhang, Y., & Vatedka, S. (2024). Multiple packing: Lower bounds via error
exponents. IEEE Transactions on Information Theory. IEEE. https://doi.org/10.1109/TIT.2023.3334032'
chicago: 'Zhang, Yihan, and Shashank Vatedka. “Multiple Packing: Lower Bounds via
Error Exponents.” IEEE Transactions on Information Theory. IEEE, 2024.
https://doi.org/10.1109/TIT.2023.3334032.'
ieee: 'Y. Zhang and S. Vatedka, “Multiple packing: Lower bounds via error exponents,”
IEEE Transactions on Information Theory, vol. 70, no. 2. IEEE, pp. 1008–1039,
2024.'
ista: 'Zhang Y, Vatedka S. 2024. Multiple packing: Lower bounds via error exponents.
IEEE Transactions on Information Theory. 70(2), 1008–1039.'
mla: 'Zhang, Yihan, and Shashank Vatedka. “Multiple Packing: Lower Bounds via Error
Exponents.” IEEE Transactions on Information Theory, vol. 70, no. 2, IEEE,
2024, pp. 1008–39, doi:10.1109/TIT.2023.3334032.'
short: Y. Zhang, S. Vatedka, IEEE Transactions on Information Theory 70 (2024) 1008–1039.
corr_author: '1'
date_created: 2023-12-10T23:01:00Z
date_published: 2024-02-01T00:00:00Z
date_updated: 2025-09-04T11:32:49Z
day: '01'
department:
- _id: MaMo
doi: 10.1109/TIT.2023.3334032
external_id:
arxiv:
- '2211.04408'
isi:
- '001166812100008'
intvolume: ' 70'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2211.04408
month: '02'
oa: 1
oa_version: Preprint
page: 1008-1039
publication: IEEE Transactions on Information Theory
publication_identifier:
eissn:
- 1557-9654
issn:
- 0018-9448
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Multiple packing: Lower bounds via error exponents'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 70
year: '2024'
...
---
_id: '14683'
abstract:
- lang: eng
text: "Mosaic analysis with double markers (MADM) technology enables the generation
of genetic mosaic tissue in mice and high-resolution phenotyping at the individual
cell level. Here, we present a protocol for isolating MADM-labeled cells with
high yield for downstream molecular analyses using fluorescence-activated cell
sorting (FACS). We describe steps for generating MADM-labeled mice, perfusion,
single-cell suspension, and debris removal. We then detail procedures for cell
sorting by FACS and downstream analysis. This protocol is suitable for embryonic
to adult mice.\r\nFor complete details on the use and execution of this protocol,
please refer to Contreras et al. (2021).1"
acknowledged_ssus:
- _id: Bio
- _id: PreCl
acknowledgement: This research was supported by the Scientific Service Units (SSU)
at IST Austria through resources provided by the Imaging & Optics Facility (IOF)
and Preclinical Facilities (PCF). N.A. received support from FWF Firnberg-Programme
(T 1031). G.C. received support from the European Union’s Horizon 2020 research
and innovation programme under the Marie Skłodowska-Curie grant agreement no. 754411
as an ISTplus postdoctoral fellow. This work was also supported by IST Austria institutional
funds, FWF SFB F78 to S.H., and the European Research Council (ERC) under the European
Union’s Horizon 2020 research and innovation programme (grant agreement no. 725780
LinPro) to S.H.
article_number: '102771'
article_processing_charge: Yes (in subscription journal)
article_type: review
author:
- first_name: Nicole
full_name: Amberg, Nicole
id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
last_name: Amberg
orcid: 0000-0002-3183-8207
- first_name: Giselle T
full_name: Cheung, Giselle T
id: 471195F6-F248-11E8-B48F-1D18A9856A87
last_name: Cheung
orcid: 0000-0001-8457-2572
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
citation:
ama: Amberg N, Cheung GT, Hippenmeyer S. Protocol for sorting cells from mouse brains
labeled with mosaic analysis with double markers by flow cytometry. STAR Protocols.
2024;5(1). doi:10.1016/j.xpro.2023.102771
apa: Amberg, N., Cheung, G. T., & Hippenmeyer, S. (2024). Protocol for sorting
cells from mouse brains labeled with mosaic analysis with double markers by flow
cytometry. STAR Protocols. Elsevier. https://doi.org/10.1016/j.xpro.2023.102771
chicago: Amberg, Nicole, Giselle T Cheung, and Simon Hippenmeyer. “Protocol for
Sorting Cells from Mouse Brains Labeled with Mosaic Analysis with Double Markers
by Flow Cytometry.” STAR Protocols. Elsevier, 2024. https://doi.org/10.1016/j.xpro.2023.102771.
ieee: N. Amberg, G. T. Cheung, and S. Hippenmeyer, “Protocol for sorting cells from
mouse brains labeled with mosaic analysis with double markers by flow cytometry,”
STAR Protocols, vol. 5, no. 1. Elsevier, 2024.
ista: Amberg N, Cheung GT, Hippenmeyer S. 2024. Protocol for sorting cells from
mouse brains labeled with mosaic analysis with double markers by flow cytometry.
STAR Protocols. 5(1), 102771.
mla: Amberg, Nicole, et al. “Protocol for Sorting Cells from Mouse Brains Labeled
with Mosaic Analysis with Double Markers by Flow Cytometry.” STAR Protocols,
vol. 5, no. 1, 102771, Elsevier, 2024, doi:10.1016/j.xpro.2023.102771.
short: N. Amberg, G.T. Cheung, S. Hippenmeyer, STAR Protocols 5 (2024).
corr_author: '1'
date_created: 2023-12-13T11:48:05Z
date_published: 2024-03-15T00:00:00Z
date_updated: 2025-04-15T08:23:06Z
day: '15'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1016/j.xpro.2023.102771
ec_funded: 1
external_id:
pmid:
- '38070137'
file:
- access_level: open_access
checksum: 3f0ee62e04bf5a44b45b035662826e95
content_type: application/pdf
creator: dernst
date_created: 2024-07-16T11:50:03Z
date_updated: 2024-07-16T11:50:03Z
file_id: '17260'
file_name: 2024_STARProtoc_Amberg.pdf
file_size: 8871807
relation: main_file
success: 1
file_date_updated: 2024-07-16T11:50:03Z
has_accepted_license: '1'
intvolume: ' 5'
issue: '1'
keyword:
- General Immunology and Microbiology
- General Biochemistry
- Genetics and Molecular Biology
- General Neuroscience
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 268F8446-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: T01031
name: Role of Eed in neural stem cell lineage progression
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 059F6AB4-7A3F-11EA-A408-12923DDC885E
grant_number: F7805
name: Stem Cell Modulation in Neural Development and Regeneration/ P05-Molecular
Mechanisms of Neural Stem Cell Lineage Progression
- _id: 260018B0-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '725780'
name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
publication: STAR Protocols
publication_identifier:
issn:
- 2666-1667
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Protocol for sorting cells from mouse brains labeled with mosaic analysis with
double markers by flow cytometry
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2024'
...
---
_id: '14687'
abstract:
- lang: eng
text: The short history of research on Li-O2 batteries has seen a remarkable number
of mechanistic U-turns over the years. From the initial use of carbonate electrolytes,
that were then found to be entirely unsuitable, to the belief that (su)peroxide
was solely responsible for degradation, before the more reactive singlet oxygen
was found to form, to the hypothesis that capacity depends on a competing surface/solution
mechanism before a practically exclusive solution mechanism was identified. Herein,
we argue for an ever-fresh look at the reported data without bias towards supposedly
established explanations. We explain how the latest findings on rate and capacity
limits, as well as the origin of side reactions, are connected via the disproportionation
(DISP) step in the (dis)charge mechanism. Therefrom, directions emerge for the
design of electrolytes and mediators on how to suppress side reactions and to
enable high rate and high reversible capacity.
acknowledgement: S.A.F. is indebted to ISTA for support. R.B.J. thanks the European
Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
grant agreement No 101034413 for funding. B.P. thanks Alistore ERI for providing
a PhD scholarship.
article_number: e202316476
article_processing_charge: Yes (via OA deal)
article_type: review
author:
- first_name: Rajesh B
full_name: Jethwa, Rajesh B
id: 4cc538d5-803f-11ed-ab7e-8139573aad8f
last_name: Jethwa
orcid: 0000-0002-0404-4356
- first_name: Soumyadip
full_name: Mondal, Soumyadip
id: d25d21ef-dc8d-11ea-abe3-ec4576307f48
last_name: Mondal
- first_name: Bhargavi
full_name: Pant, Bhargavi
id: 50c64d4d-eb97-11eb-a6c2-d33e5e14f112
last_name: Pant
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
citation:
ama: Jethwa RB, Mondal S, Pant B, Freunberger SA. To DISP or not? The far‐reaching
reaction mechanisms underpinning Lithium‐air batteries. Angewandte Chemie International
Edition. 2024;63(28). doi:10.1002/anie.202316476
apa: Jethwa, R. B., Mondal, S., Pant, B., & Freunberger, S. A. (2024). To DISP
or not? The far‐reaching reaction mechanisms underpinning Lithium‐air batteries.
Angewandte Chemie International Edition. Wiley. https://doi.org/10.1002/anie.202316476
chicago: Jethwa, Rajesh B, Soumyadip Mondal, Bhargavi Pant, and Stefan Alexander
Freunberger. “To DISP or Not? The Far‐reaching Reaction Mechanisms Underpinning
Lithium‐air Batteries.” Angewandte Chemie International Edition. Wiley,
2024. https://doi.org/10.1002/anie.202316476.
ieee: R. B. Jethwa, S. Mondal, B. Pant, and S. A. Freunberger, “To DISP or not?
The far‐reaching reaction mechanisms underpinning Lithium‐air batteries,” Angewandte
Chemie International Edition, vol. 63, no. 28. Wiley, 2024.
ista: Jethwa RB, Mondal S, Pant B, Freunberger SA. 2024. To DISP or not? The far‐reaching
reaction mechanisms underpinning Lithium‐air batteries. Angewandte Chemie International
Edition. 63(28), e202316476.
mla: Jethwa, Rajesh B., et al. “To DISP or Not? The Far‐reaching Reaction Mechanisms
Underpinning Lithium‐air Batteries.” Angewandte Chemie International Edition,
vol. 63, no. 28, e202316476, Wiley, 2024, doi:10.1002/anie.202316476.
short: R.B. Jethwa, S. Mondal, B. Pant, S.A. Freunberger, Angewandte Chemie International
Edition 63 (2024).
corr_author: '1'
date_created: 2023-12-15T16:10:13Z
date_published: 2024-07-08T00:00:00Z
date_updated: 2026-04-07T12:27:23Z
day: '08'
ddc:
- '540'
department:
- _id: StFr
- _id: GradSch
doi: 10.1002/anie.202316476
ec_funded: 1
external_id:
isi:
- '001241932700001'
pmid:
- '38095355'
file:
- access_level: open_access
checksum: fe2c23454279eb9d76ed6ca9970c21c7
content_type: application/pdf
creator: dernst
date_created: 2024-07-16T11:54:46Z
date_updated: 2024-07-16T11:54:46Z
file_id: '17261'
file_name: 2024_AngChemieInt_Jethwa.pdf
file_size: 4766445
relation: main_file
success: 1
file_date_updated: 2024-07-16T11:54:46Z
has_accepted_license: '1'
intvolume: ' 63'
isi: 1
issue: '28'
keyword:
- General Chemistry
- Catalysis
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Angewandte Chemie International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
record:
- id: '20607'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: To DISP or not? The far‐reaching reaction mechanisms underpinning Lithium‐air
batteries
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 63
year: '2024'
...
---
_id: '14701'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Lynden A.
full_name: Archer, Lynden A.
last_name: Archer
- first_name: Peter G.
full_name: Bruce, Peter G.
last_name: Bruce
- first_name: Ernesto J.
full_name: Calvo, Ernesto J.
last_name: Calvo
- first_name: Daniel
full_name: Dewar, Daniel
last_name: Dewar
- first_name: James H. J.
full_name: Ellison, James H. J.
last_name: Ellison
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Xiangwen
full_name: Gao, Xiangwen
last_name: Gao
- first_name: Laurence J.
full_name: Hardwick, Laurence J.
last_name: Hardwick
- first_name: Gabriela
full_name: Horwitz, Gabriela
last_name: Horwitz
- first_name: Jürgen
full_name: Janek, Jürgen
last_name: Janek
- first_name: Lee R.
full_name: Johnson, Lee R.
last_name: Johnson
- first_name: Jack W.
full_name: Jordan, Jack W.
last_name: Jordan
- first_name: Shoichi
full_name: Matsuda, Shoichi
last_name: Matsuda
- first_name: Svetlana
full_name: Menkin, Svetlana
last_name: Menkin
- first_name: Soumyadip
full_name: Mondal, Soumyadip
id: d25d21ef-dc8d-11ea-abe3-ec4576307f48
last_name: Mondal
- first_name: Qianyuan
full_name: Qiu, Qianyuan
last_name: Qiu
- first_name: Thukshan
full_name: Samarakoon, Thukshan
last_name: Samarakoon
- first_name: Israel
full_name: Temprano, Israel
last_name: Temprano
- first_name: Kohei
full_name: Uosaki, Kohei
last_name: Uosaki
- first_name: Ganesh
full_name: Vailaya, Ganesh
last_name: Vailaya
- first_name: Eric D.
full_name: Wachsman, Eric D.
last_name: Wachsman
- first_name: Yiying
full_name: Wu, Yiying
last_name: Wu
- first_name: Shen
full_name: Ye, Shen
last_name: Ye
citation:
ama: 'Archer LA, Bruce PG, Calvo EJ, et al. Towards practical metal–oxygen batteries:
General discussion. Faraday Discussions. 2024;248:392-411. doi:10.1039/d3fd90062b'
apa: 'Archer, L. A., Bruce, P. G., Calvo, E. J., Dewar, D., Ellison, J. H. J., Freunberger,
S. A., … Ye, S. (2024). Towards practical metal–oxygen batteries: General discussion.
Faraday Discussions. Royal Society of Chemistry. https://doi.org/10.1039/d3fd90062b'
chicago: 'Archer, Lynden A., Peter G. Bruce, Ernesto J. Calvo, Daniel Dewar, James
H. J. Ellison, Stefan Alexander Freunberger, Xiangwen Gao, et al. “Towards Practical
Metal–Oxygen Batteries: General Discussion.” Faraday Discussions. Royal
Society of Chemistry, 2024. https://doi.org/10.1039/d3fd90062b.'
ieee: 'L. A. Archer et al., “Towards practical metal–oxygen batteries: General
discussion,” Faraday Discussions, vol. 248. Royal Society of Chemistry,
pp. 392–411, 2024.'
ista: 'Archer LA, Bruce PG, Calvo EJ, Dewar D, Ellison JHJ, Freunberger SA, Gao
X, Hardwick LJ, Horwitz G, Janek J, Johnson LR, Jordan JW, Matsuda S, Menkin S,
Mondal S, Qiu Q, Samarakoon T, Temprano I, Uosaki K, Vailaya G, Wachsman ED, Wu
Y, Ye S. 2024. Towards practical metal–oxygen batteries: General discussion. Faraday
Discussions. 248, 392–411.'
mla: 'Archer, Lynden A., et al. “Towards Practical Metal–Oxygen Batteries: General
Discussion.” Faraday Discussions, vol. 248, Royal Society of Chemistry,
2024, pp. 392–411, doi:10.1039/d3fd90062b.'
short: L.A. Archer, P.G. Bruce, E.J. Calvo, D. Dewar, J.H.J. Ellison, S.A. Freunberger,
X. Gao, L.J. Hardwick, G. Horwitz, J. Janek, L.R. Johnson, J.W. Jordan, S. Matsuda,
S. Menkin, S. Mondal, Q. Qiu, T. Samarakoon, I. Temprano, K. Uosaki, G. Vailaya,
E.D. Wachsman, Y. Wu, S. Ye, Faraday Discussions 248 (2024) 392–411.
date_created: 2023-12-20T10:48:09Z
date_published: 2024-01-29T00:00:00Z
date_updated: 2025-09-04T11:34:30Z
day: '29'
department:
- _id: StFr
doi: 10.1039/d3fd90062b
external_id:
isi:
- '001130090400001'
pmid:
- '38112202'
intvolume: ' 248'
isi: 1
keyword:
- Physical and Theoretical Chemistry
language:
- iso: eng
month: '01'
oa_version: None
page: 392-411
pmid: 1
publication: Faraday Discussions
publication_identifier:
eissn:
- 1364-5498
issn:
- 1359-6640
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Towards practical metal–oxygen batteries: General discussion'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 248
year: '2024'
...
---
_id: '14702'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Gary A.
full_name: Attard, Gary A.
last_name: Attard
- first_name: Ernesto J.
full_name: Calvo, Ernesto J.
last_name: Calvo
- first_name: Larry A.
full_name: Curtiss, Larry A.
last_name: Curtiss
- first_name: Daniel
full_name: Dewar, Daniel
last_name: Dewar
- first_name: James H. J.
full_name: Ellison, James H. J.
last_name: Ellison
- first_name: Xiangwen
full_name: Gao, Xiangwen
last_name: Gao
- first_name: Clare P.
full_name: Grey, Clare P.
last_name: Grey
- first_name: Laurence J.
full_name: Hardwick, Laurence J.
last_name: Hardwick
- first_name: Gabriela
full_name: Horwitz, Gabriela
last_name: Horwitz
- first_name: Juergen
full_name: Janek, Juergen
last_name: Janek
- first_name: Lee R.
full_name: Johnson, Lee R.
last_name: Johnson
- first_name: Jack W.
full_name: Jordan, Jack W.
last_name: Jordan
- first_name: Shoichi
full_name: Matsuda, Shoichi
last_name: Matsuda
- first_name: Soumyadip
full_name: Mondal, Soumyadip
id: d25d21ef-dc8d-11ea-abe3-ec4576307f48
last_name: Mondal
- first_name: Alex R.
full_name: Neale, Alex R.
last_name: Neale
- first_name: Nagore
full_name: Ortiz-Vitoriano, Nagore
last_name: Ortiz-Vitoriano
- first_name: Israel
full_name: Temprano, Israel
last_name: Temprano
- first_name: Ganesh
full_name: Vailaya, Ganesh
last_name: Vailaya
- first_name: Eric D.
full_name: Wachsman, Eric D.
last_name: Wachsman
- first_name: Hsien-Hau
full_name: Wang, Hsien-Hau
last_name: Wang
- first_name: Yiying
full_name: Wu, Yiying
last_name: Wu
- first_name: Shen
full_name: Ye, Shen
last_name: Ye
citation:
ama: 'Attard GA, Calvo EJ, Curtiss LA, et al. Materials for stable metal–oxygen
battery cathodes: general discussion. Faraday Discussions. 2024;248:75-88.
doi:10.1039/d3fd90059b'
apa: 'Attard, G. A., Calvo, E. J., Curtiss, L. A., Dewar, D., Ellison, J. H. J.,
Gao, X., … Ye, S. (2024). Materials for stable metal–oxygen battery cathodes:
general discussion. Faraday Discussions. Royal Society of Chemistry. https://doi.org/10.1039/d3fd90059b'
chicago: 'Attard, Gary A., Ernesto J. Calvo, Larry A. Curtiss, Daniel Dewar, James
H. J. Ellison, Xiangwen Gao, Clare P. Grey, et al. “Materials for Stable Metal–Oxygen
Battery Cathodes: General Discussion.” Faraday Discussions. Royal Society
of Chemistry, 2024. https://doi.org/10.1039/d3fd90059b.'
ieee: 'G. A. Attard et al., “Materials for stable metal–oxygen battery cathodes:
general discussion,” Faraday Discussions, vol. 248. Royal Society of Chemistry,
pp. 75–88, 2024.'
ista: 'Attard GA, Calvo EJ, Curtiss LA, Dewar D, Ellison JHJ, Gao X, Grey CP, Hardwick
LJ, Horwitz G, Janek J, Johnson LR, Jordan JW, Matsuda S, Mondal S, Neale AR,
Ortiz-Vitoriano N, Temprano I, Vailaya G, Wachsman ED, Wang H-H, Wu Y, Ye S. 2024.
Materials for stable metal–oxygen battery cathodes: general discussion. Faraday
Discussions. 248, 75–88.'
mla: 'Attard, Gary A., et al. “Materials for Stable Metal–Oxygen Battery Cathodes:
General Discussion.” Faraday Discussions, vol. 248, Royal Society of Chemistry,
2024, pp. 75–88, doi:10.1039/d3fd90059b.'
short: G.A. Attard, E.J. Calvo, L.A. Curtiss, D. Dewar, J.H.J. Ellison, X. Gao,
C.P. Grey, L.J. Hardwick, G. Horwitz, J. Janek, L.R. Johnson, J.W. Jordan, S.
Matsuda, S. Mondal, A.R. Neale, N. Ortiz-Vitoriano, I. Temprano, G. Vailaya, E.D.
Wachsman, H.-H. Wang, Y. Wu, S. Ye, Faraday Discussions 248 (2024) 75–88.
date_created: 2023-12-20T10:49:43Z
date_published: 2024-01-29T00:00:00Z
date_updated: 2025-09-04T11:35:09Z
day: '29'
department:
- _id: StFr
doi: 10.1039/d3fd90059b
external_id:
isi:
- '001130029600001'
pmid:
- '38109098'
intvolume: ' 248'
isi: 1
keyword:
- Physical and Theoretical Chemistry
language:
- iso: eng
month: '01'
oa_version: None
page: 75-88
pmid: 1
publication: Faraday Discussions
publication_identifier:
eissn:
- 1364-5498
issn:
- 1359-6640
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Materials for stable metal–oxygen battery cathodes: general discussion'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 248
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '14703'
abstract:
- lang: eng
text: We present a discretization of the dynamic optimal transport problem for which
we can obtain the convergence rate for the value of the transport cost to its
continuous value when the temporal and spatial stepsize vanish. This convergence
result does not require any regularity assumption on the measures, though experiments
suggest that the rate is not sharp. Via an analysis of the duality gap we also
obtain the convergence rates for the gradient of the optimal potentials and the
velocity field under mild regularity assumptions. To obtain such rates we discretize
the dual formulation of the dynamic optimal transport problem and use the mature
literature related to the error due to discretizing the Hamilton-Jacobi equation.
acknowledgement: 'The authors would like to thank Chris Wojtan for his continuous
support and several interesting discussions. Part of this research was performed
during two visits: one of SI to the BIDSA research center at Bocconi University,
and one of HL to the Institute of Science and Technology Austria. Both host institutions
are warmly acknowledged for the hospitality. HL is partially supported by the MUR-Prin
2022-202244A7YL “Gradient Flows and Non-Smooth Geometric Structures with Applications
to Optimization and Machine Learning”, funded by the European Union - Next Generation
EU. SI is supported in part by ERC Consolidator Grant 101045083 “CoDiNA” funded
by the European Research Council.'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Sadashige
full_name: Ishida, Sadashige
id: 6F7C4B96-A8E9-11E9-A7CA-09ECE5697425
last_name: Ishida
orcid: 0000-0002-3121-3100
- first_name: Hugo
full_name: Lavenant, Hugo
last_name: Lavenant
citation:
ama: Ishida S, Lavenant H. Quantitative convergence of a discretization of dynamic
optimal transport using the dual formulation. Foundations of Computational
Mathematics. 2024. doi:10.1007/s10208-024-09686-3
apa: Ishida, S., & Lavenant, H. (2024). Quantitative convergence of a discretization
of dynamic optimal transport using the dual formulation. Foundations of Computational
Mathematics. Springer Nature. https://doi.org/10.1007/s10208-024-09686-3
chicago: Ishida, Sadashige, and Hugo Lavenant. “Quantitative Convergence of a Discretization
of Dynamic Optimal Transport Using the Dual Formulation.” Foundations of Computational
Mathematics. Springer Nature, 2024. https://doi.org/10.1007/s10208-024-09686-3.
ieee: S. Ishida and H. Lavenant, “Quantitative convergence of a discretization of
dynamic optimal transport using the dual formulation,” Foundations of Computational
Mathematics. Springer Nature, 2024.
ista: Ishida S, Lavenant H. 2024. Quantitative convergence of a discretization of
dynamic optimal transport using the dual formulation. Foundations of Computational
Mathematics.
mla: Ishida, Sadashige, and Hugo Lavenant. “Quantitative Convergence of a Discretization
of Dynamic Optimal Transport Using the Dual Formulation.” Foundations of Computational
Mathematics, Springer Nature, 2024, doi:10.1007/s10208-024-09686-3.
short: S. Ishida, H. Lavenant, Foundations of Computational Mathematics (2024).
corr_author: '1'
date_created: 2023-12-21T10:14:37Z
date_published: 2024-11-11T00:00:00Z
date_updated: 2026-06-18T17:37:10Z
day: '11'
ddc:
- '000'
department:
- _id: GradSch
- _id: ChWo
doi: 10.1007/s10208-024-09686-3
external_id:
arxiv:
- '2312.12213'
isi:
- '001352503300001'
isi: 1
keyword:
- Optimal transport
- Hamilton-Jacobi equation
- convex optimization
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1007/s10208-024-09686-3
month: '11'
oa: 1
oa_version: Published Version
project:
- _id: 34bc2376-11ca-11ed-8bc3-9a3b3961a088
grant_number: '101045083'
name: Computational Discovery of Numerical Algorithms for Animation and Simulation
of Natural Phenomena
publication: Foundations of Computational Mathematics
publication_identifier:
eissn:
- 1615-3383
issn:
- 1615-3375
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantitative convergence of a discretization of dynamic optimal transport using
the dual formulation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
_id: '14705'
abstract:
- lang: eng
text: Since the commercialization of brine shrimp (genus Artemia) in the 1950s,
this lineage, and in particular the model species Artemia franciscana, has been
the subject of extensive research. However, our understanding of the genetic mechanisms
underlying various aspects of their reproductive biology, including sex determination,
are still lacking. This is partly due to the scarcity of genomic resources for
Artemia species and crustaceans in general. Here, we present a chromosome-level
genome assembly of Artemia franciscana (Kellogg 1906), from the Great Salt Lake,
USA. The genome is 1GB, and the majority of the genome (81%) is scaffolded into
21 linkage groups using a previously published high-density linkage map. We performed
coverage and FST analyses using male and female genomic and transcriptomic reads
to quantify the extent of differentiation between the Z and W chromosomes. Additionally,
we quantified the expression levels in male and female heads and gonads and found
further evidence for dosage compensation in this species.
article_processing_charge: No
author:
- first_name: Marwan N
full_name: Elkrewi, Marwan N
id: 0B46FACA-A8E1-11E9-9BD3-79D1E5697425
last_name: Elkrewi
orcid: 0000-0002-5328-7231
citation:
ama: Elkrewi MN. Data from “Chromosome-level assembly of Artemia franciscana sheds
light on sex-chromosome differentiation.” 2024. doi:10.15479/AT:ISTA:14705
apa: Elkrewi, M. N. (2024). Data from “Chromosome-level assembly of Artemia franciscana
sheds light on sex-chromosome differentiation.” Institute of Science and Technology
Austria. https://doi.org/10.15479/AT:ISTA:14705
chicago: Elkrewi, Marwan N. “Data from ‘Chromosome-Level Assembly of Artemia Franciscana
Sheds Light on Sex-Chromosome Differentiation.’” Institute of Science and Technology
Austria, 2024. https://doi.org/10.15479/AT:ISTA:14705.
ieee: M. N. Elkrewi, “Data from ‘Chromosome-level assembly of Artemia franciscana
sheds light on sex-chromosome differentiation.’” Institute of Science and Technology
Austria, 2024.
ista: Elkrewi MN. 2024. Data from ‘Chromosome-level assembly of Artemia franciscana
sheds light on sex-chromosome differentiation’, Institute of Science and Technology
Austria, 10.15479/AT:ISTA:14705.
mla: Elkrewi, Marwan N. Data from “Chromosome-Level Assembly of Artemia Franciscana
Sheds Light on Sex-Chromosome Differentiation.” Institute of Science and Technology
Austria, 2024, doi:10.15479/AT:ISTA:14705.
short: M.N. Elkrewi, (2024).
contributor:
- contributor_type: researcher
first_name: Vincent K
id: 57854184-AAE0-11E9-8D04-98D6E5697425
last_name: Bett
- contributor_type: project_member
first_name: Ariana
id: 2A0848E2-F248-11E8-B48F-1D18A9856A87
last_name: Macon
- contributor_type: supervisor
first_name: Beatriz
id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
last_name: Vicoso
orcid: 0000-0002-4579-8306
- contributor_type: researcher
first_name: Marwan N
id: 0B46FACA-A8E1-11E9-9BD3-79D1E5697425
last_name: Elkrewi
orcid: 0000-0002-5328-7231
corr_author: '1'
date_created: 2023-12-22T13:40:48Z
date_published: 2024-01-02T00:00:00Z
date_updated: 2025-09-04T12:05:42Z
day: '02'
ddc:
- '576'
department:
- _id: GradSch
- _id: BeVi
doi: 10.15479/AT:ISTA:14705
file:
- access_level: open_access
checksum: bdaf1392867786634ec5466d528c36ca
content_type: text/plain
creator: melkrewi
date_created: 2023-12-22T13:54:21Z
date_updated: 2023-12-22T13:54:21Z
file_id: '14707'
file_name: readme.txt.txt
file_size: 847
relation: main_file
success: 1
- access_level: open_access
checksum: 973e1cbdab923a71709782177980829f
content_type: application/x-zip-compressed
creator: melkrewi
date_created: 2023-12-22T14:14:06Z
date_updated: 2023-12-22T14:14:06Z
file_id: '14708'
file_name: data_artemia_franciscana_genome.zip
file_size: 343632753
relation: main_file
success: 1
file_date_updated: 2023-12-22T14:14:06Z
has_accepted_license: '1'
keyword:
- sex chromosome evolution
- genome assembly
- dosage compensation
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 34ae1506-11ca-11ed-8bc3-c14f4c474396
grant_number: F8810
name: The highjacking of meiosis for asexual reproduction
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '15009'
relation: used_in_publication
status: public
status: public
title: Data from "Chromosome-level assembly of Artemia franciscana sheds light on
sex-chromosome differentiation"
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...