---
OA_place: publisher
OA_type: hybrid
_id: '21759'
abstract:
- lang: eng
  text: 'Promoters and enhancers are cis-regulatory elements (CREs), DNA sequences
    that bind transcription factor (TF) proteins to up- or down-regulate target genes.
    Decades-long efforts yielded TF-DNA interaction models that predict how strongly
    an individual TF binds arbitrary DNA sequences and how individual binding events
    on the CRE combine to affect gene expression. These insights can be synthesized
    into a global, biophysically realistic, and quantitative genotype-phenotype (GP)
    map for gene regulation, a ‘holy grail’ for the application of evolutionary theory.
    A global map provides a rare opportunity to simulate the long-term evolution of
    regulatory sequences and pose several fundamental questions: How long does it
    take to evolve CREs de novo? How many non-trivial regulatory functions exist in
    sequence space? How connected are they? For which regulatory architecture is CRE
    evolution most rapid and evolvable? In this article, the second of a two-part
    series, we review the application of evolutionary concepts — epistasis, robustness,
    evolvability, tunability, plasticity, and bet-hedging — to the evolution of gene
    regulatory sequences. We then evaluate the potential for a unifying theory for
    the evolution of regulatory sequences and identify key open challenges.'
acknowledgement: "We thank Calin Guet and Santiago Herrera-Álvarez for essential contributions
  to this manuscript.\r\nE.M. acknowledges support from the APART-USA fellowship,
  jointly funded by the Austrian Academy of Sciences (ÖAW) and the Institute of Science
  and Technology Austria (ISTA). N.B. acknowledges funding from the ERC Advanced Grant
  101055327 “HaplotypeStructure”.\r\nThis study was also supported by the European
  Molecular Biology Laboratory (N.O.B., J.C.)."
article_number: '102472'
article_processing_charge: Yes (via OA deal)
article_type: review
author:
- first_name: Elia
  full_name: Mascolo, Elia
  id: 776a6ed0-a053-11f0-8635-80b95e0e0d53
  last_name: Mascolo
  orcid: 0000-0003-2977-7844
- first_name: Reka E
  full_name: Körei, Reka E
  id: 50FDE43E-AA30-11E9-A72B-8A12E6697425
  last_name: Körei
- first_name: Noa O.
  full_name: Borst, Noa O.
  last_name: Borst
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
- first_name: Justin
  full_name: Crocker, Justin
  last_name: Crocker
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
citation:
  ama: 'Mascolo E, Körei RE, Borst NO, Barton NH, Crocker J, Tkačik G. Long-term evolution
    of regulatory DNA sequences. Part 2: Theory and future challenges. <i>Current
    Opinion in Genetics and Development</i>. 2026;98. doi:<a href="https://doi.org/10.1016/j.gde.2026.102472">10.1016/j.gde.2026.102472</a>'
  apa: 'Mascolo, E., Körei, R. E., Borst, N. O., Barton, N. H., Crocker, J., &#38;
    Tkačik, G. (2026). Long-term evolution of regulatory DNA sequences. Part 2: Theory
    and future challenges. <i>Current Opinion in Genetics and Development</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.gde.2026.102472">https://doi.org/10.1016/j.gde.2026.102472</a>'
  chicago: 'Mascolo, Elia, Reka E Körei, Noa O. Borst, Nicholas H Barton, Justin Crocker,
    and Gašper Tkačik. “Long-Term Evolution of Regulatory DNA Sequences. Part 2: Theory
    and Future Challenges.” <i>Current Opinion in Genetics and Development</i>. Elsevier,
    2026. <a href="https://doi.org/10.1016/j.gde.2026.102472">https://doi.org/10.1016/j.gde.2026.102472</a>.'
  ieee: 'E. Mascolo, R. E. Körei, N. O. Borst, N. H. Barton, J. Crocker, and G. Tkačik,
    “Long-term evolution of regulatory DNA sequences. Part 2: Theory and future challenges,”
    <i>Current Opinion in Genetics and Development</i>, vol. 98. Elsevier, 2026.'
  ista: 'Mascolo E, Körei RE, Borst NO, Barton NH, Crocker J, Tkačik G. 2026. Long-term
    evolution of regulatory DNA sequences. Part 2: Theory and future challenges. Current
    Opinion in Genetics and Development. 98, 102472.'
  mla: 'Mascolo, Elia, et al. “Long-Term Evolution of Regulatory DNA Sequences. Part
    2: Theory and Future Challenges.” <i>Current Opinion in Genetics and Development</i>,
    vol. 98, 102472, Elsevier, 2026, doi:<a href="https://doi.org/10.1016/j.gde.2026.102472">10.1016/j.gde.2026.102472</a>.'
  short: E. Mascolo, R.E. Körei, N.O. Borst, N.H. Barton, J. Crocker, G. Tkačik, Current
    Opinion in Genetics and Development 98 (2026).
corr_author: '1'
date_created: 2026-04-26T22:01:46Z
date_published: 2026-04-15T00:00:00Z
date_updated: 2026-04-28T12:41:00Z
day: '15'
department:
- _id: GaTk
- _id: NiBa
doi: 10.1016/j.gde.2026.102472
intvolume: '        98'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.gde.2026.102472
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: bd6958e0-d553-11ed-ba76-86eba6a76c00
  grant_number: '101055327'
  name: Understanding the evolution of continuous genomes
publication: Current Opinion in Genetics and Development
publication_identifier:
  eissn:
  - 1879-0380
  issn:
  - 0959-437X
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Long-term evolution of regulatory DNA sequences. Part 2: Theory and future
  challenges'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 98
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21766'
abstract:
- lang: eng
  text: We provide a new characterisation of the decades old open problem of extending
    bilipschitz mappings given on a Euclidean separated net. In particular, this allows
    for the complete positive solution of the open problem in dimension two. Along
    the way, we develop a set of tools for bilipschitz extensions of mappings between
    subsets of Euclidean spaces.
acknowledgement: "The present work developed from a research visit of M.D. to V.K.
  at IST Austria, funded by\r\na London Mathematical Society Research in Pairs grant.
  This work was done while V.K. was fully funded by the Austria Science Fund (FWF)
  [M 3100-N]."
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Michael
  full_name: Dymond, Michael
  last_name: Dymond
- first_name: Vojtech
  full_name: Kaluza, Vojtech
  id: 21AE5134-9EAC-11EA-BEA2-D7BD3DDC885E
  last_name: Kaluza
  orcid: 0000-0002-2512-8698
citation:
  ama: Dymond M, Kaluza V. Extending bilipschitz mappings between separated nets.
    <i>Annales Fennici Mathematici</i>. 2026;51(1):237-260. doi:<a href="https://doi.org/10.54330/afm.181562">10.54330/afm.181562</a>
  apa: Dymond, M., &#38; Kaluza, V. (2026). Extending bilipschitz mappings between
    separated nets. <i>Annales Fennici Mathematici</i>. Finnish Mathematical Society.
    <a href="https://doi.org/10.54330/afm.181562">https://doi.org/10.54330/afm.181562</a>
  chicago: Dymond, Michael, and Vojtech Kaluza. “Extending Bilipschitz Mappings between
    Separated Nets.” <i>Annales Fennici Mathematici</i>. Finnish Mathematical Society,
    2026. <a href="https://doi.org/10.54330/afm.181562">https://doi.org/10.54330/afm.181562</a>.
  ieee: M. Dymond and V. Kaluza, “Extending bilipschitz mappings between separated
    nets,” <i>Annales Fennici Mathematici</i>, vol. 51, no. 1. Finnish Mathematical
    Society, pp. 237–260, 2026.
  ista: Dymond M, Kaluza V. 2026. Extending bilipschitz mappings between separated
    nets. Annales Fennici Mathematici. 51(1), 237–260.
  mla: Dymond, Michael, and Vojtech Kaluza. “Extending Bilipschitz Mappings between
    Separated Nets.” <i>Annales Fennici Mathematici</i>, vol. 51, no. 1, Finnish Mathematical
    Society, 2026, pp. 237–60, doi:<a href="https://doi.org/10.54330/afm.181562">10.54330/afm.181562</a>.
  short: M. Dymond, V. Kaluza, Annales Fennici Mathematici 51 (2026) 237–260.
corr_author: '1'
date_created: 2026-04-26T22:01:47Z
date_published: 2026-04-17T00:00:00Z
date_updated: 2026-04-28T12:06:00Z
day: '17'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.54330/afm.181562
external_id:
  arxiv:
  - '2507.22007'
file:
- access_level: open_access
  checksum: 442023926a3803d5d6ca8db8dbc4af1c
  content_type: application/pdf
  creator: dernst
  date_created: 2026-04-28T12:03:13Z
  date_updated: 2026-04-28T12:03:13Z
  file_id: '21772'
  file_name: 2026_AnnalesFenniciMath_Dymond.pdf
  file_size: 342082
  relation: main_file
  success: 1
file_date_updated: 2026-04-28T12:03:13Z
has_accepted_license: '1'
intvolume: '        51'
issue: '1'
keyword:
- Lipschitz
- bilipschitz
- extension
- separated net.
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 237-260
project:
- _id: fc35eaa2-9c52-11eb-aca3-88501ab155e9
  grant_number: M03100
  name: Spectra and topology of graphs and of simplicial complexes
publication: Annales Fennici Mathematici
publication_identifier:
  eissn:
  - 2737-114X
  issn:
  - 2737-0690
publication_status: published
publisher: Finnish Mathematical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extending bilipschitz mappings between separated nets
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 51
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21006'
abstract:
- lang: eng
  text: Modern experimental methods in programmable self-assembly make it possible
    to precisely design particle concentrations, shapes and interactions. However,
    more physical insight is needed before we can take full advantage of this vast
    design space to assemble nanostructures with complex form and function. Here we
    show how a substantial part of this design space can be quickly and comprehensively
    understood by identifying a class of thermodynamic constraints that act on it.
    These thermodynamic constraints form a high-dimensional convex polyhedron that
    determines which nanostructures can be assembled at high equilibrium yield and
    reveals limitations that govern the coexistence of structures. We validate our
    predictions through detailed, quantitative assembly experiments of nanoscale particles
    synthesized using DNA origami. Our results uncover physical relationships underpinning
    many-component programmable self-assembly in equilibrium and form the basis for
    robust inverse design, applicable to various systems from biological protein complexes
    to synthetic nanomachines.
acknowledgement: We thank B. Isaac and A. Tiano for their technical support with the
  electron microscopy and S. Waitukaitis for helpful comments on the manuscript. The
  TEM images were prepared and imaged at the Brandeis Electron Microscopy facility.
  This work was supported by the Gesellschaft für Forschungsförderung Niederösterreich
  under project FTI23-G-011 (M.C.H. and C.P.G.), the Brandeis University Materials
  Research Science and Engineering Center (MRSEC) under grant number NSF DMR-2011846
  (T.E.V., D.H. and W.B.R.) and the Smith Family Foundation (W.B.R.). Open access
  funding provided by Institute of Science and Technology (IST Austria).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Maximilian
  full_name: Hübl, Maximilian
  id: 5eb8629e-15b2-11ec-abd3-e6f3e5e01f32
  last_name: Hübl
- first_name: Thomas E.
  full_name: Videbæk, Thomas E.
  last_name: Videbæk
- first_name: Daichi
  full_name: Hayakawa, Daichi
  last_name: Hayakawa
- first_name: W. Benjamin
  full_name: Rogers, W. Benjamin
  last_name: Rogers
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
citation:
  ama: Hübl M, Videbæk TE, Hayakawa D, Rogers WB, Goodrich CP. A polyhedral structure
    controls programmable self-assembly. <i>Nature Physics</i>. 2026. doi:<a href="https://doi.org/10.1038/s41567-025-03120-3">10.1038/s41567-025-03120-3</a>
  apa: Hübl, M., Videbæk, T. E., Hayakawa, D., Rogers, W. B., &#38; Goodrich, C. P.
    (2026). A polyhedral structure controls programmable self-assembly. <i>Nature
    Physics</i>. Springer Nature. <a href="https://doi.org/10.1038/s41567-025-03120-3">https://doi.org/10.1038/s41567-025-03120-3</a>
  chicago: Hübl, Maximilian, Thomas E. Videbæk, Daichi Hayakawa, W. Benjamin Rogers,
    and Carl Peter Goodrich. “A Polyhedral Structure Controls Programmable Self-Assembly.”
    <i>Nature Physics</i>. Springer Nature, 2026. <a href="https://doi.org/10.1038/s41567-025-03120-3">https://doi.org/10.1038/s41567-025-03120-3</a>.
  ieee: M. Hübl, T. E. Videbæk, D. Hayakawa, W. B. Rogers, and C. P. Goodrich, “A
    polyhedral structure controls programmable self-assembly,” <i>Nature Physics</i>.
    Springer Nature, 2026.
  ista: Hübl M, Videbæk TE, Hayakawa D, Rogers WB, Goodrich CP. 2026. A polyhedral
    structure controls programmable self-assembly. Nature Physics.
  mla: Hübl, Maximilian, et al. “A Polyhedral Structure Controls Programmable Self-Assembly.”
    <i>Nature Physics</i>, Springer Nature, 2026, doi:<a href="https://doi.org/10.1038/s41567-025-03120-3">10.1038/s41567-025-03120-3</a>.
  short: M. Hübl, T.E. Videbæk, D. Hayakawa, W.B. Rogers, C.P. Goodrich, Nature Physics
    (2026).
corr_author: '1'
date_created: 2026-01-20T10:02:19Z
date_published: 2026-01-08T00:00:00Z
date_updated: 2026-04-28T11:56:45Z
day: '08'
ddc:
- '570'
- '540'
department:
- _id: CaGo
- _id: GradSch
doi: 10.1038/s41567-025-03120-3
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41567-025-03120-3
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 8dd93da8-16d5-11f0-9cad-d2c70200d9a5
  grant_number: FTI23-G-011
  name: Dynamically reconfigurable self-assembly with triangular DNA-origami bricks
publication: Nature Physics
publication_identifier:
  eissn:
  - 1745-2481
  issn:
  - 1745-2473
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA website
    relation: press_release
    url: https://ista.ac.at/en/news/behind-natures-blueprints/
scopus_import: '1'
status: public
title: A polyhedral structure controls programmable self-assembly
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21760'
abstract:
- lang: eng
  text: 3I/ATLAS is the third interstellar object discovered to date, following 1I/‘Oumuamua
    and 2I/Borisov. Its unusually high excess velocity and active cometary nature
    make it a key probe of the Galactic population of icy planetesimals. Understanding
    its origin requires its past trajectory through the Galaxy to be traced and the
    possible role of stellar encounters to be assessed, both as a potential origin
    and a perturber to its orbit. We integrated the orbit of 3I/ATLAS backward in
    time for 10 Myr, together with a sample of Gaia DR3 stars with high-quality astrometry
    and radial velocities, to identify close passages within 2 pc. We identify 93
    nominal encounters, 62 of which are significant at the 2σ level. However, none
    of these encounters produced any meaningful perturbation. The strongest perturber
    Gaia DR3 6863591389529611264 at 0.30 pc and with a relative velocity of 35 km
    s−1, imparted only a velocity change of ∣Δv∣  ≃  5  ×  10−4 km s−1 to the orbit
    of 3I/ATLAS. Our results indicate that no stellar flybys within the past 10 Myr
    and 500 pc contained in Gaia DR3 can account for the present trajectory of 3I/ATLAS
    or be associated with its origin. We further show that 3I/ATLAS is kinematically
    consistent with a thin-disk population, despite its large peculiar velocity.
acknowledgement: We thank the anonymous referee for a careful reading of the manuscript
  and for constructive comments that improved the paper. X.P.C. and S.T. thank J.L.
  Gragera-Más and Ylva Götberg for their valuable feedback and comments. X.P.C. acknowledges
  financial support from the Spanish National Programme for the Promotion of Talent
  and its Employability grant PRE2022-104959 cofunded by the European Social Fund.
  S.T. acknowledges the funding from the European Union’s Horizon 2020 research and
  innovation program under the Marie Skłodowska-Curie grant agreement No. 101034413.
  E.V. acknowledges support from the DISCOBOLO project funded by the Spanish Ministerio
  de Ciencia, Innovación y Universidades under grant PID2021-127289NB-I00. A.J.M.
  acknowledges support from the Swedish National Space Agency (Career grant 2023-00146).
  X.P.C. and M.M. acknowledge support from the Spanish Ministerio de Ciencia, Innovaciòn
  y Universidades under grants PID2021122842OB-C22 and PID2024-157964OB-C22; from
  the Xunta de Galicia and the European Union (FEDER Galicia 2021-2027 Program) Ref.
  ED431B 2024/21, ED431B 2024/02, and CITIC ED431G 2023/01. This work has made use
  of data from the European Space Agency (ESA) Gaia mission and processed by the Gaia
  Data Processing and Analysis Consortium (DPAC). Funding for the DPAC has been provided
  by national institutions, particularly the institutions participating in the Gaia
  Multilateral Agreement.
article_number: '146'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: X.
  full_name: Pérez-Couto, X.
  last_name: Pérez-Couto
- first_name: Santiago
  full_name: Torres Rodriguez, Santiago
  id: a8df4360-4328-11ee-8f1a-e502d0c83fc2
  last_name: Torres Rodriguez
  orcid: 0000-0002-3150-8988
- first_name: E.
  full_name: Villaver, E.
  last_name: Villaver
- first_name: A. J.
  full_name: Mustill, A. J.
  last_name: Mustill
- first_name: M.
  full_name: Manteiga, M.
  last_name: Manteiga
citation:
  ama: 'Pérez-Couto X, Torres Rodriguez S, Villaver E, Mustill AJ, Manteiga M. 3I/ATLAS:
    In search of the witnesses to its voyage. <i>The Astrophysical Journal</i>. 2026;1001(2).
    doi:<a href="https://doi.org/10.3847/1538-4357/ae56ff">10.3847/1538-4357/ae56ff</a>'
  apa: 'Pérez-Couto, X., Torres Rodriguez, S., Villaver, E., Mustill, A. J., &#38;
    Manteiga, M. (2026). 3I/ATLAS: In search of the witnesses to its voyage. <i>The
    Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae56ff">https://doi.org/10.3847/1538-4357/ae56ff</a>'
  chicago: 'Pérez-Couto, X., Santiago Torres Rodriguez, E. Villaver, A. J. Mustill,
    and M. Manteiga. “3I/ATLAS: In Search of the Witnesses to Its Voyage.” <i>The
    Astrophysical Journal</i>. IOP Publishing, 2026. <a href="https://doi.org/10.3847/1538-4357/ae56ff">https://doi.org/10.3847/1538-4357/ae56ff</a>.'
  ieee: 'X. Pérez-Couto, S. Torres Rodriguez, E. Villaver, A. J. Mustill, and M. Manteiga,
    “3I/ATLAS: In search of the witnesses to its voyage,” <i>The Astrophysical Journal</i>,
    vol. 1001, no. 2. IOP Publishing, 2026.'
  ista: 'Pérez-Couto X, Torres Rodriguez S, Villaver E, Mustill AJ, Manteiga M. 2026.
    3I/ATLAS: In search of the witnesses to its voyage. The Astrophysical Journal.
    1001(2), 146.'
  mla: 'Pérez-Couto, X., et al. “3I/ATLAS: In Search of the Witnesses to Its Voyage.”
    <i>The Astrophysical Journal</i>, vol. 1001, no. 2, 146, IOP Publishing, 2026,
    doi:<a href="https://doi.org/10.3847/1538-4357/ae56ff">10.3847/1538-4357/ae56ff</a>.'
  short: X. Pérez-Couto, S. Torres Rodriguez, E. Villaver, A.J. Mustill, M. Manteiga,
    The Astrophysical Journal 1001 (2026).
date_created: 2026-04-26T22:01:46Z
date_published: 2026-04-20T00:00:00Z
date_updated: 2026-04-28T13:08:39Z
day: '20'
ddc:
- '520'
department:
- _id: LiBu
doi: 10.3847/1538-4357/ae56ff
ec_funded: 1
external_id:
  arxiv:
  - '2509.07678'
file:
- access_level: open_access
  checksum: c3daf49261a9933c079854c38eec316f
  content_type: application/pdf
  creator: dernst
  date_created: 2026-04-28T13:06:00Z
  date_updated: 2026-04-28T13:06:00Z
  file_id: '21773'
  file_name: 2026_AstrophysicalJournal_PerezCouto.pdf
  file_size: 2905627
  relation: main_file
  success: 1
file_date_updated: 2026-04-28T13:06:00Z
has_accepted_license: '1'
intvolume: '      1001'
issue: '2'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: '3I/ATLAS: In search of the witnesses to its voyage'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1001
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21761'
abstract:
- lang: eng
  text: Neural tube closure is a critical morphogenetic process in vertebrate development,
    and failure to close cranial regions such as the hindbrain neuropore (HNP) leads
    to severe congenital malformations. While mechanical forces such as actomyosin
    purse-string contraction and directional cell crawling have been implicated in
    driving HNP closure, how these forces organize local cell shape and motion to
    produce large-scale tissue remodeling remains poorly understood. Using live and
    fixed imaging of mouse embryos combined with cell-based biophysical modeling,
    we show that these force-generating mechanisms are insufficient to explain the
    reproducible patterns of cell elongation and nematic alignment observed at the
    HNP border. Instead, we show that local anisotropic stress and cytoskeletal organization
    are required to generate these patterns and promote midline cell motion. Our model
    captures key features of cell shape dynamics and emergent nematic order, which
    we confirm experimentally, including the alignment of actin fibers with cell shape
    and enhanced midline cell speed. Comparative analysis with chick embryos, which
    lack supracellular purse strings, supports a conserved link between tension generation
    and cellular patterning. These findings establish a physical framework connecting
    force generation, cell shape anisotropy, and tissue morphodynamics during epithelial
    gap closure.
acknowledgement: S.B. acknowledges support from the National Institutes of Health
  (NIH R35 GM143042) and the National Science Foundation (NSF MCB-2203601). G.L.G.
  acknowledges support from the Wellcome Trust (211112/Z/18/Z), the Royal Society
  (RG\R2\232082), and the Leverhulme Trust (RPG-2024-147). E.M. acknowledges support
  from European Union’s Horizon 2021 Marie Sklodowska-Curie grant agreement no. 101067028.
  F.P.-V. acknowledges support from the NOMIS foundation. The surface subtraction
  macro is courtesy of Dr. Dale Moulding and available on GitHub (https://github.com/DaleMoulding/Fiji-Macros).
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Fernanda L
  full_name: Perez Verdugo, Fernanda L
  id: 4ecec223-9070-11ef-a0a9-bc76077bea8d
  last_name: Perez Verdugo
- first_name: Eirini
  full_name: Maniou, Eirini
  last_name: Maniou
- first_name: Gabriel L.
  full_name: Galea, Gabriel L.
  last_name: Galea
- first_name: Shiladitya
  full_name: Banerjee, Shiladitya
  last_name: Banerjee
citation:
  ama: Perez Verdugo FL, Maniou E, Galea GL, Banerjee S. Mechanosensitive feedback
    organizes cell shape and motion during hindbrain neuropore morphogenesis. <i>Current
    Biology</i>. 2026;36(8):1903-1917.e5. doi:<a href="https://doi.org/10.1016/j.cub.2026.02.068">10.1016/j.cub.2026.02.068</a>
  apa: Perez Verdugo, F. L., Maniou, E., Galea, G. L., &#38; Banerjee, S. (2026).
    Mechanosensitive feedback organizes cell shape and motion during hindbrain neuropore
    morphogenesis. <i>Current Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.cub.2026.02.068">https://doi.org/10.1016/j.cub.2026.02.068</a>
  chicago: Perez Verdugo, Fernanda L, Eirini Maniou, Gabriel L. Galea, and Shiladitya
    Banerjee. “Mechanosensitive Feedback Organizes Cell Shape and Motion during Hindbrain
    Neuropore Morphogenesis.” <i>Current Biology</i>. Elsevier, 2026. <a href="https://doi.org/10.1016/j.cub.2026.02.068">https://doi.org/10.1016/j.cub.2026.02.068</a>.
  ieee: F. L. Perez Verdugo, E. Maniou, G. L. Galea, and S. Banerjee, “Mechanosensitive
    feedback organizes cell shape and motion during hindbrain neuropore morphogenesis,”
    <i>Current Biology</i>, vol. 36, no. 8. Elsevier, p. 1903–1917.e5, 2026.
  ista: Perez Verdugo FL, Maniou E, Galea GL, Banerjee S. 2026. Mechanosensitive feedback
    organizes cell shape and motion during hindbrain neuropore morphogenesis. Current
    Biology. 36(8), 1903–1917.e5.
  mla: Perez Verdugo, Fernanda L., et al. “Mechanosensitive Feedback Organizes Cell
    Shape and Motion during Hindbrain Neuropore Morphogenesis.” <i>Current Biology</i>,
    vol. 36, no. 8, Elsevier, 2026, p. 1903–1917.e5, doi:<a href="https://doi.org/10.1016/j.cub.2026.02.068">10.1016/j.cub.2026.02.068</a>.
  short: F.L. Perez Verdugo, E. Maniou, G.L. Galea, S. Banerjee, Current Biology 36
    (2026) 1903–1917.e5.
date_created: 2026-04-26T22:01:46Z
date_published: 2026-04-20T00:00:00Z
date_updated: 2026-04-28T13:15:42Z
day: '20'
ddc:
- '570'
department:
- _id: AnSa
doi: 10.1016/j.cub.2026.02.068
external_id:
  pmid:
  - '41881011'
file:
- access_level: open_access
  checksum: 80ae45457b4682c50c84f54de15aa9a8
  content_type: application/pdf
  creator: dernst
  date_created: 2026-04-28T13:13:40Z
  date_updated: 2026-04-28T13:13:40Z
  file_id: '21774'
  file_name: 2026_CurrentBiology_PerezVerdugo.pdf
  file_size: 13402043
  relation: main_file
  success: 1
file_date_updated: 2026-04-28T13:13:40Z
has_accepted_license: '1'
intvolume: '        36'
issue: '8'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1903-1917.e5
pmid: 1
publication: Current Biology
publication_identifier:
  eissn:
  - 1879-0445
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanosensitive feedback organizes cell shape and motion during hindbrain
  neuropore morphogenesis
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2026'
...
---
OA_type: closed access
_id: '21762'
abstract:
- lang: eng
  text: Bacteria, like eukaryotes, use conserved cytoskeletal systems for intracellular
    organization. The plasmid-encoded ParMRC system forms actin-like filaments that
    segregate low–copy number plasmids. In multicellular cyanobacteria such as Anabaena
    sp., we found that a chromosomally encoded ParMR system has evolved into a cytoskeletal
    system named CorMR with a function in cell shape control rather than DNA segregation.
    Live-cell imaging, in vitro reconstitution, and cryo–electron microscopy revealed
    that CorM formed dynamically unstable, antiparallel double-stranded filaments
    that were recruited to the membrane by CorR through an amphipathic helix conserved
    in multicellular cyanobacteria. CorMR filaments were regulated by MinC, which
    excluded them from the poles and division plane. Comparative genomics indicated
    that the repurposing of ParMR and Min systems coevolved with cyanobacterial multicellularity,
    highlighting the evolutionary plasticity of cytoskeletal systems in bacteria.
acknowledged_ssus:
- _id: Bio
- _id: ScienComp
- _id: EM-Fac
- _id: LifeSc
acknowledgement: "We thank all members of the Loose lab at ISTA for helpful discussions;
  M. Kojic for critical reading of the manuscript; A. Herrero (Sevilla University)
  for sharing her extensive BACTH plasmid library and other plasmids, as well as cyanobacterial
  strains; T. Dagan and F. Nies (both Kiel University) for sharing cyanobacterial
  strains and plasmids and for valuable discussions; N. Sapay and A. Michon for providing
  the Amphipaseek code, which enabled us to perform our large-scale amphipathic helix
  screen of cyanobacterial CorR proteins; V.-V. Hodirnau for support in cryo-ET data
  collection; and J. Hansen for advice about cryo-EM data processing.\r\nThis work
  was supported by the Scientific Service Units (SSU) of ISTA through resources provided
  by the Imaging & Optics Facility (IOF), the Scientific Computing (SciComp), the
  Electron Microscopy Facility (EMF), and the Lab Support Facility (LSF). This work
  was funded by the European Union’s Horizon 2020 research and innovation program
  (Marie Skłodowska-Curie grant 101034413 to B.L.S.); the European Research Council
  (ERC) of the European Union (grant ActinID 101076260 to F.K.M.S.); the Swiss National
  Science Foundation (starting grant TMSGI3_226208 to G.L.W.); and the Jean-Jacques
  et Letitia Lopez-Loreta Foundation (G.L.W.)."
article_number: eaea6343
article_processing_charge: No
article_type: original
author:
- first_name: Benjamin L
  full_name: Springstein, Benjamin L
  id: b4eb62ef-ac72-11ed-9503-ed3b4d66c083
  last_name: Springstein
  orcid: 0000-0002-3461-5391
- first_name: Manjunath
  full_name: Javoor, Manjunath
  id: 305ab18b-dc7d-11ea-9b2f-b58195228ea2
  last_name: Javoor
  orcid: 0000-0003-2311-2112
- first_name: Daniela
  full_name: Megrian, Daniela
  last_name: Megrian
- first_name: Roman
  full_name: Hajdu, Roman
  id: ffab949d-133f-11ed-8f02-94de21ace503
  last_name: Hajdu
- first_name: Dustin M.
  full_name: Hanke, Dustin M.
  last_name: Hanke
- first_name: Bettina
  full_name: Zens, Bettina
  id: 45FD126C-F248-11E8-B48F-1D18A9856A87
  last_name: Zens
  orcid: 0000-0002-9561-1239
- first_name: Gregor L.
  full_name: Weiss, Gregor L.
  last_name: Weiss
- first_name: Florian Km
  full_name: Schur, Florian Km
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
- first_name: Martin
  full_name: Loose, Martin
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
citation:
  ama: Springstein BL, Javoor M, Megrian D, et al. Repurposing of a DNA segregation
    machinery into a cytoskeletal system controlling cell shape. <i>Science</i>. 2026;392(6795).
    doi:<a href="https://doi.org/10.1126/science.aea6343">10.1126/science.aea6343</a>
  apa: Springstein, B. L., Javoor, M., Megrian, D., Hajdu, R., Hanke, D. M., Zens,
    B., … Loose, M. (2026). Repurposing of a DNA segregation machinery into a cytoskeletal
    system controlling cell shape. <i>Science</i>. AAAS. <a href="https://doi.org/10.1126/science.aea6343">https://doi.org/10.1126/science.aea6343</a>
  chicago: Springstein, Benjamin L, Manjunath Javoor, Daniela Megrian, Roman Hajdu,
    Dustin M. Hanke, Bettina Zens, Gregor L. Weiss, Florian KM Schur, and Martin Loose.
    “Repurposing of a DNA Segregation Machinery into a Cytoskeletal System Controlling
    Cell Shape.” <i>Science</i>. AAAS, 2026. <a href="https://doi.org/10.1126/science.aea6343">https://doi.org/10.1126/science.aea6343</a>.
  ieee: B. L. Springstein <i>et al.</i>, “Repurposing of a DNA segregation machinery
    into a cytoskeletal system controlling cell shape,” <i>Science</i>, vol. 392,
    no. 6795. AAAS, 2026.
  ista: Springstein BL, Javoor M, Megrian D, Hajdu R, Hanke DM, Zens B, Weiss GL,
    Schur FK, Loose M. 2026. Repurposing of a DNA segregation machinery into a cytoskeletal
    system controlling cell shape. Science. 392(6795), eaea6343.
  mla: Springstein, Benjamin L., et al. “Repurposing of a DNA Segregation Machinery
    into a Cytoskeletal System Controlling Cell Shape.” <i>Science</i>, vol. 392,
    no. 6795, eaea6343, AAAS, 2026, doi:<a href="https://doi.org/10.1126/science.aea6343">10.1126/science.aea6343</a>.
  short: B.L. Springstein, M. Javoor, D. Megrian, R. Hajdu, D.M. Hanke, B. Zens, G.L.
    Weiss, F.K. Schur, M. Loose, Science 392 (2026).
corr_author: '1'
date_created: 2026-04-26T22:01:46Z
date_published: 2026-04-16T00:00:00Z
date_updated: 2026-04-28T13:29:05Z
day: '16'
department:
- _id: MaLo
- _id: FlSc
- _id: GradSch
- _id: EM-Fac
doi: 10.1126/science.aea6343
ec_funded: 1
external_id:
  pmid:
  - '41990175'
intvolume: '       392'
issue: '6795'
language:
- iso: eng
month: '04'
oa_version: None
pmid: 1
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
- _id: bd980d18-d553-11ed-ba76-ceaa645c97eb
  grant_number: '101076260'
  name: A molecular atlas of Actin filament IDentities in the cell motility machinery
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: AAAS
quality_controlled: '1'
scopus_import: '1'
status: public
title: Repurposing of a DNA segregation machinery into a cytoskeletal system controlling
  cell shape
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 392
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21755'
abstract:
- lang: eng
  text: Tropical shallow clouds are a major source of uncertainty in Earth's climate
    sensitivity, especially through their spatial arrangement, which global climate
    models do not represent. Efforts to understand their organization have partly
    relied on classifying observed scenes, identifying four patterns as archetypal
    regimes. Here we analyze geostationary satellite imagery of the western tropical
    Atlantic using the L‐function, a tool based on point pattern theory that quantifies
    cloud organization across spatial scales. Classical examples of the four patterns
    show distinct L‐function fingerprints, revealing their characteristic clustering
    and regularity scales and aiding physical interpretation. Yet, when evaluating
    many scenes at fixed spatial scales, the L‐function distribution lacks the distinct
    modes expected from discrete regimes. This is corroborated by analyses of other
    organization indices employing diverse approaches, from inter‐cloud nearest‐neighbor
    distances to fractal analysis. Implications for the parameterization of mesoscale
    cloud organization in climate models are discussed.
acknowledgement: GB was supported by an ICTP Postdoctoral Research Fellowship Agreement.
  GM was supported by the CNRS. AC was supported by the European Union's Horizon 2020
  research and innovation programme Marie Sklodowska-Curie Grant agreement No 101034413.
  LJF acknowledges funding from the NERC Doctoral Training Partnership in Environmental
  Research Grant NE/S007474/1. We thank three anonymous reviewers and Jiawei Bao for
  their insightful comments, which greatly improved this manuscript.
article_number: e2025GL119921
article_processing_charge: Yes
article_type: original
author:
- first_name: Giovanni
  full_name: Biagioli, Giovanni
  last_name: Biagioli
- first_name: Giulio
  full_name: Mandorli, Giulio
  last_name: Mandorli
- first_name: Lilli Johanna
  full_name: Freischem, Lilli Johanna
  last_name: Freischem
- first_name: Alejandro
  full_name: Casallas Garcia, Alejandro
  id: 92081129-2d75-11ef-a48d-b04dd7a2385a
  last_name: Casallas Garcia
  orcid: 0000-0002-1988-5035
- first_name: Adrian Mark
  full_name: Tompkins, Adrian Mark
  last_name: Tompkins
citation:
  ama: 'Biagioli G, Mandorli G, Freischem LJ, Casallas Garcia A, Tompkins AM. Spatial
    patterns of shallow clouds: Challenging the concept of defined regimes. <i>Geophysical
    Research Letters</i>. 2026;53(8). doi:<a href="https://doi.org/10.1029/2025gl119921">10.1029/2025gl119921</a>'
  apa: 'Biagioli, G., Mandorli, G., Freischem, L. J., Casallas Garcia, A., &#38; Tompkins,
    A. M. (2026). Spatial patterns of shallow clouds: Challenging the concept of defined
    regimes. <i>Geophysical Research Letters</i>. Wiley. <a href="https://doi.org/10.1029/2025gl119921">https://doi.org/10.1029/2025gl119921</a>'
  chicago: 'Biagioli, Giovanni, Giulio Mandorli, Lilli Johanna Freischem, Alejandro
    Casallas Garcia, and Adrian Mark Tompkins. “Spatial Patterns of Shallow Clouds:
    Challenging the Concept of Defined Regimes.” <i>Geophysical Research Letters</i>.
    Wiley, 2026. <a href="https://doi.org/10.1029/2025gl119921">https://doi.org/10.1029/2025gl119921</a>.'
  ieee: 'G. Biagioli, G. Mandorli, L. J. Freischem, A. Casallas Garcia, and A. M.
    Tompkins, “Spatial patterns of shallow clouds: Challenging the concept of defined
    regimes,” <i>Geophysical Research Letters</i>, vol. 53, no. 8. Wiley, 2026.'
  ista: 'Biagioli G, Mandorli G, Freischem LJ, Casallas Garcia A, Tompkins AM. 2026.
    Spatial patterns of shallow clouds: Challenging the concept of defined regimes.
    Geophysical Research Letters. 53(8), e2025GL119921.'
  mla: 'Biagioli, Giovanni, et al. “Spatial Patterns of Shallow Clouds: Challenging
    the Concept of Defined Regimes.” <i>Geophysical Research Letters</i>, vol. 53,
    no. 8, e2025GL119921, Wiley, 2026, doi:<a href="https://doi.org/10.1029/2025gl119921">10.1029/2025gl119921</a>.'
  short: G. Biagioli, G. Mandorli, L.J. Freischem, A. Casallas Garcia, A.M. Tompkins,
    Geophysical Research Letters 53 (2026).
date_created: 2026-04-21T06:04:41Z
date_published: 2026-04-28T00:00:00Z
date_updated: 2026-04-28T13:35:53Z
day: '28'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.1029/2025gl119921
ec_funded: 1
file:
- access_level: open_access
  checksum: 2cd4ae120b14b244f5b2f50eaae0efc1
  content_type: application/pdf
  creator: acasalla
  date_created: 2026-04-21T06:07:22Z
  date_updated: 2026-04-21T06:07:22Z
  file_id: '21756'
  file_name: Gio_Casallas_2026.pdf
  file_size: 1544417
  relation: main_file
  success: 1
file_date_updated: 2026-04-21T06:07:22Z
has_accepted_license: '1'
intvolume: '        53'
issue: '8'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Geophysical Research Letters
publication_identifier:
  eissn:
  - 1944-8007
  issn:
  - 0094-8276
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Spatial patterns of shallow clouds: Challenging the concept of defined regimes'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 53
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21752'
abstract:
- lang: eng
  text: Epithelial tissues function as multicellular communities that preserve tissue
    integrity while adapting to diverse environmental stresses by altering cell behaviors.
    A striking manifestation of such adaptability is cell plasticity, the ability
    of differentiated cells to revert to stem-like states or adopt alternative fates.
    Once considered rare and confined to highly regenerative species, cell plasticity
    is now recognized across the metazoan tree. In early-branching animals such as
    sponges and cnidarians, transdifferentiation and dedifferentiation are integral
    to life-cycle transitions and regeneration, whereas in more complex organisms,
    these processes typically emerge under stress, including stem cell loss or environmental
    perturbations. Here, we examine epithelial cell plasticity through evolutionary,
    cellular, and molecular perspectives. Focusing on the intestinal epithelium, we
    explore findings from mammalian and Drosophila models showing that progenitors
    and even terminally differentiated cells can dedifferentiate in response to external
    stimuli that disrupt homeostasis, such as pathogen infection and nutrient fluctuations.
    We further discuss conserved mechanisms involving intercellular signaling (e.g.,
    Notch, EGFR, and JAK-STAT) and chromatin states primed for reprogramming, modulated
    by metabolic cues. Together, these insights position cell plasticity as an ancient
    environmental adaptation strategy, shaped by conserved molecular toolkits and
    refined by species- and cell lineage-specific innovations.
acknowledgement: This work was supported by JSPS/MEXT KAKENHI (grant numbers JP22J01430
  to H.N., JP23H04696, JP23K24025, JP25H02543, JP25K02406 to Y.N.), JST FOREST Program
  JPMJFR233E (Y.N.), The Cell Science Research Foundation (Y.N.), and Takeda Science
  Foundation (Y.N.).
article_number: '103670'
article_processing_charge: Yes (in subscription journal)
article_type: review
author:
- first_name: Hiroki
  full_name: Nagai, Hiroki
  id: 608df3e6-e2ab-11ed-8890-c9318cec7da4
  last_name: Nagai
  orcid: 0000-0003-1671-9434
- first_name: Yu Ichiro
  full_name: Nakajima, Yu Ichiro
  last_name: Nakajima
citation:
  ama: 'NAGAI H, Nakajima YI. Epithelial cell plasticity in metazoans: Evolutionary
    insights into roles and mechanisms. <i>Seminars in Cell and Developmental Biology</i>.
    2026;179-180. doi:<a href="https://doi.org/10.1016/j.semcdb.2026.103670">10.1016/j.semcdb.2026.103670</a>'
  apa: 'NAGAI, H., &#38; Nakajima, Y. I. (2026). Epithelial cell plasticity in metazoans:
    Evolutionary insights into roles and mechanisms. <i>Seminars in Cell and Developmental
    Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.semcdb.2026.103670">https://doi.org/10.1016/j.semcdb.2026.103670</a>'
  chicago: 'NAGAI, HIROKI, and Yu Ichiro Nakajima. “Epithelial Cell Plasticity in
    Metazoans: Evolutionary Insights into Roles and Mechanisms.” <i>Seminars in Cell
    and Developmental Biology</i>. Elsevier, 2026. <a href="https://doi.org/10.1016/j.semcdb.2026.103670">https://doi.org/10.1016/j.semcdb.2026.103670</a>.'
  ieee: 'H. NAGAI and Y. I. Nakajima, “Epithelial cell plasticity in metazoans: Evolutionary
    insights into roles and mechanisms,” <i>Seminars in Cell and Developmental Biology</i>,
    vol. 179–180. Elsevier, 2026.'
  ista: 'NAGAI H, Nakajima YI. 2026. Epithelial cell plasticity in metazoans: Evolutionary
    insights into roles and mechanisms. Seminars in Cell and Developmental Biology.
    179–180, 103670.'
  mla: 'NAGAI, HIROKI, and Yu Ichiro Nakajima. “Epithelial Cell Plasticity in Metazoans:
    Evolutionary Insights into Roles and Mechanisms.” <i>Seminars in Cell and Developmental
    Biology</i>, vol. 179–180, 103670, Elsevier, 2026, doi:<a href="https://doi.org/10.1016/j.semcdb.2026.103670">10.1016/j.semcdb.2026.103670</a>.'
  short: H. NAGAI, Y.I. Nakajima, Seminars in Cell and Developmental Biology 179–180
    (2026).
corr_author: '1'
date_created: 2026-04-19T22:07:49Z
date_published: 2026-05-01T00:00:00Z
date_updated: 2026-04-28T14:11:13Z
day: '01'
ddc:
- '570'
department:
- _id: XiFe
doi: 10.1016/j.semcdb.2026.103670
file:
- access_level: open_access
  checksum: 0a0929a045d0cbd964297768833c14ae
  content_type: application/pdf
  creator: dernst
  date_created: 2026-04-28T13:58:47Z
  date_updated: 2026-04-28T13:58:47Z
  file_id: '21775'
  file_name: 2026_SeminarsCellDevBiology_Nagai.pdf
  file_size: 1306613
  relation: main_file
  success: 1
file_date_updated: 2026-04-28T13:58:47Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: Seminars in Cell and Developmental Biology
publication_identifier:
  eissn:
  - 1096-3634
  issn:
  - 1084-9521
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Epithelial cell plasticity in metazoans: Evolutionary insights into roles
  and mechanisms'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 179-180
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21705'
abstract:
- lang: eng
  text: "We report the discovery of ATLAS J101342.5−451656.8 (hereafter ATLAS J1013−4516),
    an 8.56 minute orbital-period mass-transferring AM Canum Venaticorum (AM CVn)
    binary with a mean Gaia magnitude of G = 19.51, identified via periodic variability
    in light curves from the Asteroid Terrestrial-impact Last Alert System (ATLAS)
    of Gaia white dwarf candidates. Follow-up with the Large Lenslet Array Magellan
    Spectrograph shows a helium-dominated accretion disk, and high-speed ULTRACAM
    photometry reveals pronounced primary and secondary eclipses. We construct a decade-long
    timing baseline leveraging light curves from the ATLAS and Gaia surveys, as well
    as the high-speed imagers ULTRACAM on the New Energy Telescope and proto-Lightspeed
    on the Magellan Clay telescope. From this timing baseline, we measure an orbital
    period derivative of P 1.60 0.07 10 = ± × 12 s s−1. Interpreted in the context
    of stable mass transfer, the magnitude and sign of P indicate that the orbital
    evolution is governed by the interplay between gravitationalwave-driven angular-momentum
    losses and mass transfer, directly probing the donor’s structural response to
    mass loss. We constrain the accretor and donor mass based on stable mass-transfer
    arguments assuming angularmomentum loss dominated by gravitational-wave emission,
    allowing us to infer the characteristic gravitational\r\nwave strain of the binary
    for future space-based GW observatories such as the Laser Interferometer Space
    Antenna (LISA). We predict a characteristic strain corresponding to a 4 yr LISA
    signal-to-noise ratio ≳10, establishing ATLAS J1013−4516 as a strong prospective
    LISA source that will probe long-term orbital evolution in the mass-transferring
    regime."
acknowledgement: This work has made use of data from the Asteroid Terrestrial-impact
  Last Alert System (ATLAS) project. The Asteroid Terrestrial-impact Last Alert System
  (ATLAS) project is primarily funded to search for near-Earth asteroids through NASA
  grants NN12AR55G, 80NSSC18K0284, and 80NSSC18K1575; byproducts of the NEO search
  include images and catalogs from the survey area. This work was partially funded
  by Kepler/K2 grant J1944/80NSSC19K0112 and HST GO-15889 and STFC grants ST/T000198/1
  and ST/S006109/1. The ATLAS science products have been made possible through the
  contributions of the University of Hawaii Institute for Astronomy, the Queen’s University
  Belfast, the Space Telescope Science Institute, the South African Astronomical Observatory,
  and the Millennium Institute of Astrophysics (MAS), Chile. VSD and ULTRACAM are
  supported by STFC grant ST/Z000033/1. J.G.M. gratefully acknowledges support from
  the Heising-Simons Foundation and the Pappalardo family through the MIT Pappalardo
  Fellowship in Physics.
article_number: '237'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Emma T.
  full_name: Chickles, Emma T.
  last_name: Chickles
- first_name: Joheen
  full_name: Chakraborty, Joheen
  last_name: Chakraborty
- first_name: Kevin B.
  full_name: Burdge, Kevin B.
  last_name: Burdge
- first_name: Vik S.
  full_name: Dhillon, Vik S.
  last_name: Dhillon
- first_name: Paul
  full_name: Draghis, Paul
  last_name: Draghis
- first_name: Kareem
  full_name: El-Badry, Kareem
  last_name: El-Badry
- first_name: Matthew J.
  full_name: Green, Matthew J.
  last_name: Green
- first_name: Aaron
  full_name: Householder, Aaron
  last_name: Householder
- first_name: Sarah
  full_name: Hughes, Sarah
  last_name: Hughes
- first_name: Christopher
  full_name: Layden, Christopher
  last_name: Layden
- first_name: Stuart P.
  full_name: Littlefair, Stuart P.
  last_name: Littlefair
- first_name: James
  full_name: Munday, James
  last_name: Munday
- first_name: Ingrid
  full_name: Pelisoli, Ingrid
  last_name: Pelisoli
- first_name: Maya S.
  full_name: Redden, Maya S.
  last_name: Redden
- first_name: John
  full_name: Tonry, John
  last_name: Tonry
- first_name: Joannes C
  full_name: van Roestel, Joannes C
  id: 4d122fc8-6083-11f0-87a5-97d68b860333
  last_name: van Roestel
- first_name: Francesco Elio
  full_name: Angile, Francesco Elio
  last_name: Angile
- first_name: Alex J.
  full_name: Brown, Alex J.
  last_name: Brown
- first_name: Noel Castro
  full_name: Segura, Noel Castro
  last_name: Segura
- first_name: Jack
  full_name: Dinsmore, Jack
  last_name: Dinsmore
- first_name: Martin
  full_name: Dyer, Martin
  last_name: Dyer
- first_name: Gabor
  full_name: Furesz, Gabor
  last_name: Furesz
- first_name: Michelle
  full_name: Gabutti, Michelle
  last_name: Gabutti
- first_name: James
  full_name: Garbutt, James
  last_name: Garbutt
- first_name: Juliana
  full_name: García-Mejía, Juliana
  last_name: García-Mejía
- first_name: Daniel
  full_name: Jarvis, Daniel
  last_name: Jarvis
- first_name: Mark R.
  full_name: Kennedy, Mark R.
  last_name: Kennedy
- first_name: Paul
  full_name: Kerry, Paul
  last_name: Kerry
- first_name: James
  full_name: Mccormac, James
  last_name: Mccormac
- first_name: Geoffrey
  full_name: Mo, Geoffrey
  last_name: Mo
- first_name: Dave
  full_name: Osip, Dave
  last_name: Osip
- first_name: Steven
  full_name: Parsons, Steven
  last_name: Parsons
- first_name: Eleanor
  full_name: Pike, Eleanor
  last_name: Pike
- first_name: John J.
  full_name: Piotrowski, John J.
  last_name: Piotrowski
- first_name: Roger W.
  full_name: Romani, Roger W.
  last_name: Romani
- first_name: David
  full_name: Sahman, David
  last_name: Sahman
- first_name: Rob
  full_name: Simcoe, Rob
  last_name: Simcoe
citation:
  ama: Chickles ET, Chakraborty J, Burdge KB, et al. An eclipsing 8.56 minutes orbital
    period mass-transferring binary. <i>The Astrophysical Journal</i>. 2026;1000(2).
    doi:<a href="https://doi.org/10.3847/1538-4357/ae4871">10.3847/1538-4357/ae4871</a>
  apa: Chickles, E. T., Chakraborty, J., Burdge, K. B., Dhillon, V. S., Draghis, P.,
    El-Badry, K., … Simcoe, R. (2026). An eclipsing 8.56 minutes orbital period mass-transferring
    binary. <i>The Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae4871">https://doi.org/10.3847/1538-4357/ae4871</a>
  chicago: Chickles, Emma T., Joheen Chakraborty, Kevin B. Burdge, Vik S. Dhillon,
    Paul Draghis, Kareem El-Badry, Matthew J. Green, et al. “An Eclipsing 8.56 Minutes
    Orbital Period Mass-Transferring Binary.” <i>The Astrophysical Journal</i>. IOP
    Publishing, 2026. <a href="https://doi.org/10.3847/1538-4357/ae4871">https://doi.org/10.3847/1538-4357/ae4871</a>.
  ieee: E. T. Chickles <i>et al.</i>, “An eclipsing 8.56 minutes orbital period mass-transferring
    binary,” <i>The Astrophysical Journal</i>, vol. 1000, no. 2. IOP Publishing, 2026.
  ista: Chickles ET, Chakraborty J, Burdge KB, Dhillon VS, Draghis P, El-Badry K,
    Green MJ, Householder A, Hughes S, Layden C, Littlefair SP, Munday J, Pelisoli
    I, Redden MS, Tonry J, van Roestel JC, Angile FE, Brown AJ, Segura NC, Dinsmore
    J, Dyer M, Furesz G, Gabutti M, Garbutt J, García-Mejía J, Jarvis D, Kennedy MR,
    Kerry P, Mccormac J, Mo G, Osip D, Parsons S, Pike E, Piotrowski JJ, Romani RW,
    Sahman D, Simcoe R. 2026. An eclipsing 8.56 minutes orbital period mass-transferring
    binary. The Astrophysical Journal. 1000(2), 237.
  mla: Chickles, Emma T., et al. “An Eclipsing 8.56 Minutes Orbital Period Mass-Transferring
    Binary.” <i>The Astrophysical Journal</i>, vol. 1000, no. 2, 237, IOP Publishing,
    2026, doi:<a href="https://doi.org/10.3847/1538-4357/ae4871">10.3847/1538-4357/ae4871</a>.
  short: E.T. Chickles, J. Chakraborty, K.B. Burdge, V.S. Dhillon, P. Draghis, K.
    El-Badry, M.J. Green, A. Householder, S. Hughes, C. Layden, S.P. Littlefair, J.
    Munday, I. Pelisoli, M.S. Redden, J. Tonry, J.C. van Roestel, F.E. Angile, A.J.
    Brown, N.C. Segura, J. Dinsmore, M. Dyer, G. Furesz, M. Gabutti, J. Garbutt, J.
    García-Mejía, D. Jarvis, M.R. Kennedy, P. Kerry, J. Mccormac, G. Mo, D. Osip,
    S. Parsons, E. Pike, J.J. Piotrowski, R.W. Romani, D. Sahman, R. Simcoe, The Astrophysical
    Journal 1000 (2026).
date_created: 2026-04-12T22:01:47Z
date_published: 2026-04-01T00:00:00Z
date_updated: 2026-05-04T06:37:12Z
day: '01'
ddc:
- '520'
department:
- _id: IlCa
doi: 10.3847/1538-4357/ae4871
external_id:
  arxiv:
  - '2601.07925'
file:
- access_level: open_access
  checksum: c8f64a78f36224d8e0ea1f324e43e389
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T06:36:00Z
  date_updated: 2026-05-04T06:36:00Z
  file_id: '21782'
  file_name: 2026_AstrophysicalJournal_Chickles.pdf
  file_size: 1225916
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T06:36:00Z
has_accepted_license: '1'
intvolume: '      1000'
issue: '2'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: An eclipsing 8.56 minutes orbital period mass-transferring binary
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1000
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21709'
abstract:
- lang: eng
  text: 'JWST’s “little red dots” (LRDs) are increasingly interpreted as active galactic
    nuclei (AGN) obscured by dense thermalized gas rather than dust as evidenced by
    their X-ray weakness, blackbody-like continua, and Balmer line profiles. Key questions
    are how LRDs connect to standard UV-luminous AGN, whether transitional phases
    exist, and whether they are observable. We present the “X-ray dot” (XRD), a compact
    source at z = 3.28 observed by the NIRSpec Wide Guaranteed Time Observation survey.
    The XRD exhibits LRD hallmarks: a blackbody-like (Teff ≃ 6400 K) red continuum,
    a faint but blue rest-UV excess, falling mid-IR emission, and broad Balmer lines
    (FWHM ∼ 2700–3200 km s−1). Unlike LRDs, however, it is remarkably X-ray luminous
    (L2−10 keV = 1044.18 erg s−1) and has a continuum inflection that is blueward
    of the Balmer limit. We find that the red rest-optical and blue mid-IR continuum
    cannot be reproduced by standard dust-attenuated AGN models without invoking extremely
    steep extinction curves, nor can the weak mid-IR emission be reconciled with well-established
    X-ray–torus scaling relations. We therefore consider an alternative scenario:
    the XRD may be an LRD in transition, where the gas envelope dominates the optical
    continuum but optically thin sight lines allow X-rays to escape. The XRD may thus
    provide a physical link between LRDs and standard AGN, offering direct evidence
    that LRDs are powered by supermassive black holes and providing insight into their
    accretion properties.'
acknowledgement: "We would like to thank the anonymous reviewer for their constructive
  comments, which improved the final manuscript.\r\n\r\nWe thank Bernd Husemann for
  his critical contributions to the NIRSpec Wide GTO survey, and in particular his
  help in selecting high-priority X-ray-luminous targets.\r\n\r\nR.E.H. acknowledges
  support by the German Aerospace Center (DLR) and the Federal Ministry for Economic
  Affairs and Energy (BMWi) through program 50OR2403 “RUBIES.” A.d.G. acknowledges
  support from a Clay Fellowship awarded by the Smithsonian Astrophysical Observatory.
  A.J.B. acknowledges funding from the “FirstGalaxies” Advanced grant from the European
  Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
  program (grant agreement No. 789056). R.P.N. thanks Neil Pappalardo and Jane Pappalardo
  for their generous support of the MIT Pappalardo Fellowships in Physics. Support
  for this work was provided by the Brinson Foundation through a Brinson Prize Fellowship
  grant. H.Ü. acknowledges funding by the European Union (ERC APEX, 101164796). Views
  and opinions expressed are, however, those of the authors only and do not necessarily
  reflect those of the European Union or the European Research Council Executive Agency.
  Neither the European Union nor the granting authority can be held responsible for
  them. G.V. acknowledges support from European Union’s HE ERC Starting grant No.
  101040227—WINGS. B.W. acknowledges support provided by NASA through Hubble Fellowship
  grant HST-HF2-51592.001 awarded by the Space Telescope Science Institute, which
  is operated by the Association of Universities for Research in Astronomy, In., for
  NASA, under the contract NAS 5-26555.\r\n\r\nThe data products presented herein
  were retrieved from the Dawn JWST Archive (DJA). DJA is an initiative of the Cosmic
  Dawn Center (DAWN).\r\n\r\nThis work is based in part on observations made with
  the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski
  Archive for Space Telescopes at the Space Telescope Science Institute, which is
  operated by the Association of Universities for Research in Astronomy, Inc., under
  NASA contract NAS 5-03127 for JWST. These observations are associated with programs
  Nos. GTO-1213. The data described here may be obtained from the MAST archive at
  DOI: 10.17909/qffz-b324.\r\n\r\nThis Letter employs a list of Chandra datasets,
  obtained by the Chandra X-ray Observatory, contained in DOI: 10.25574/cdc.540.\r\n\r\nThis
  work is based on observations taken by the 3D-HST Treasury Program (GO 12177 and
  12328) with the NASA/ESA HST, which is operated by the Association of Universities
  for Research in Astronomy, Inc., under NASA contract NAS5-26555.\r\n\r\nThis work
  makes use of color palettes created by Martin Krzywinski designed for colorblindness.
  The color palettes and more information can be found at http://mkweb.bcgsc.ca/colorblind/.\r\n\r\nFacilities:
  CXO - Chandra X-ray Observatory satellite (ACIS), HST - Hubble Space Telescope satellite
  (ACS, WFC3) - , CFHT - Canada-France-Hawaii Telescope (WIRCam), JWST - James Webb
  Space Telescope (NIRSpec), Spitzer - Spitzer Space Telescope satellite (IRAC, MIPS)
  - , JCMT - James Clerk Maxwell Telescope (SCUBA).\r\n\r\nSoftware: Astropy (Astropy
  Collaboration et al. 2013, 2018, 2022), dust_attenuation, dust_extinction (K. Gordon
  2024), jax (J. Bradbury et al. 2018), LaTeX (L. Lamport 1994), Matplotlib (J. D.
  Hunter 2007), NumPy (T. E. Oliphant 2006; S. van der Walt et al. 2011; C. R. Harris
  et al. 2020), NumPyro (D. Phan et al. 2019), scipy (P. Virtanen et al. 2020), sedpy
  (B. Johnson & J. Leja 2017), specutils (Astropy-Specutils Development Team 2019),
  unite (R. E. Hviding 2025)."
article_number: L18
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Raphael E.
  full_name: Hviding, Raphael E.
  last_name: Hviding
- first_name: Anna
  full_name: De Graaff, Anna
  last_name: De Graaff
- first_name: Hanpu
  full_name: Liu, Hanpu
  last_name: Liu
- first_name: Andy D.
  full_name: Goulding, Andy D.
  last_name: Goulding
- first_name: Yilun
  full_name: Ma, Yilun
  last_name: Ma
- first_name: Jenny E.
  full_name: Greene, Jenny E.
  last_name: Greene
- first_name: Leindert A.
  full_name: Boogaard, Leindert A.
  last_name: Boogaard
- first_name: Andrew J.
  full_name: Bunker, Andrew J.
  last_name: Bunker
- first_name: Nikko J.
  full_name: Cleri, Nikko J.
  last_name: Cleri
- first_name: Marijn
  full_name: Franx, Marijn
  last_name: Franx
- first_name: Michaela
  full_name: Hirschmann, Michaela
  last_name: Hirschmann
- first_name: Joel
  full_name: Leja, Joel
  last_name: Leja
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Rohan P.
  full_name: Naidu, Rohan P.
  last_name: Naidu
- first_name: David J.
  full_name: Setton, David J.
  last_name: Setton
- first_name: Hannah
  full_name: Übler, Hannah
  last_name: Übler
- first_name: Giacomo
  full_name: Venturi, Giacomo
  last_name: Venturi
- first_name: Bingjie
  full_name: Wang, Bingjie
  last_name: Wang
citation:
  ama: 'Hviding RE, De Graaff A, Liu H, et al. The X-ray dot: Exotic dust or a late-stage
    Little Red Dot? <i>The Astrophysical Journal Letters</i>. 2026;1000(1). doi:<a
    href="https://doi.org/10.3847/2041-8213/ae4c88">10.3847/2041-8213/ae4c88</a>'
  apa: 'Hviding, R. E., De Graaff, A., Liu, H., Goulding, A. D., Ma, Y., Greene, J.
    E., … Wang, B. (2026). The X-ray dot: Exotic dust or a late-stage Little Red Dot?
    <i>The Astrophysical Journal Letters</i>. IOP Publishing. <a href="https://doi.org/10.3847/2041-8213/ae4c88">https://doi.org/10.3847/2041-8213/ae4c88</a>'
  chicago: 'Hviding, Raphael E., Anna De Graaff, Hanpu Liu, Andy D. Goulding, Yilun
    Ma, Jenny E. Greene, Leindert A. Boogaard, et al. “The X-Ray Dot: Exotic Dust
    or a Late-Stage Little Red Dot?” <i>The Astrophysical Journal Letters</i>. IOP
    Publishing, 2026. <a href="https://doi.org/10.3847/2041-8213/ae4c88">https://doi.org/10.3847/2041-8213/ae4c88</a>.'
  ieee: 'R. E. Hviding <i>et al.</i>, “The X-ray dot: Exotic dust or a late-stage
    Little Red Dot?,” <i>The Astrophysical Journal Letters</i>, vol. 1000, no. 1.
    IOP Publishing, 2026.'
  ista: 'Hviding RE, De Graaff A, Liu H, Goulding AD, Ma Y, Greene JE, Boogaard LA,
    Bunker AJ, Cleri NJ, Franx M, Hirschmann M, Leja J, Matthee JJ, Naidu RP, Setton
    DJ, Übler H, Venturi G, Wang B. 2026. The X-ray dot: Exotic dust or a late-stage
    Little Red Dot? The Astrophysical Journal Letters. 1000(1), L18.'
  mla: 'Hviding, Raphael E., et al. “The X-Ray Dot: Exotic Dust or a Late-Stage Little
    Red Dot?” <i>The Astrophysical Journal Letters</i>, vol. 1000, no. 1, L18, IOP
    Publishing, 2026, doi:<a href="https://doi.org/10.3847/2041-8213/ae4c88">10.3847/2041-8213/ae4c88</a>.'
  short: R.E. Hviding, A. De Graaff, H. Liu, A.D. Goulding, Y. Ma, J.E. Greene, L.A.
    Boogaard, A.J. Bunker, N.J. Cleri, M. Franx, M. Hirschmann, J. Leja, J.J. Matthee,
    R.P. Naidu, D.J. Setton, H. Übler, G. Venturi, B. Wang, The Astrophysical Journal
    Letters 1000 (2026).
date_created: 2026-04-12T22:01:48Z
date_published: 2026-03-20T00:00:00Z
date_updated: 2026-05-04T07:13:07Z
day: '20'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.3847/2041-8213/ae4c88
external_id:
  arxiv:
  - '2601.09778'
file:
- access_level: open_access
  checksum: 1be4f361bf59aa08b8c98ed4f475a463
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T07:11:37Z
  date_updated: 2026-05-04T07:11:37Z
  file_id: '21784'
  file_name: 2026_AstrophysicalJourLetters_Hviding.pdf
  file_size: 2821786
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T07:11:37Z
has_accepted_license: '1'
intvolume: '      1000'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal Letters
publication_identifier:
  eissn:
  - 2041-8213
  issn:
  - 2041-8205
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The X-ray dot: Exotic dust or a late-stage Little Red Dot?'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1000
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21704'
abstract:
- lang: eng
  text: How functional protein sequences are distributed in sequence space is fundamentally
    important for evolutionary theory and protein design, particularly if a large
    diversity of protein functions are hidden in evolutionarily unexplored areas of
    the sequence space. However, this question is understudied in part because experimental
    and computational studies use extant sequences as a starting point to study sequence
    space. Here, we study whether extant sequences are representative of the entire
    functional sequence space. Across thousands of protein families from vertebrates
    and bacteria we calculate the dimensionality and the volume of sequence space
    occupied by extant homologs. We find that the observed dimensionality and volume
    of extant sequence space are minuscule, many orders of magnitude smaller than
    what we estimated using a model of protein evolution. Simulating sequence evolution
    we then quantify the impact of phylogeny, selection, and epistasis on restricting
    the evolutionary exploration of sequence space. We find that sequence evolution
    from a single common ancestor, or a single point of origin in sequence space,
    is by far the largest limiting factor that reduces the dimensionality and volume
    of extant sequence space. These results indicate that there are vast areas of
    functional sequence space that have not been explored in evolution because of
    the excessive restrictions on natural exploration of the protein sequence space
    imposed by the point of origin effect. We suggest that protein design methods
    that rely on extant sequences may be limited in their ability to discover truly
    novel functions.
acknowledgement: We thank Olga Kalinina for feedback on our manuscript, Vsevolod Kuksin
  for fruitful discussions and Lev Tsarin for participation in the design of our models.
  This work was supported by Japan Science and Technology Agency as part of Adopting
  Sustainable Partnerships for Innovative Research Ecosystem, Grant No. JPMJAP24B2
  (F.A.K. and L.H.I.), and Fonds Zur Förderung der Wissenschaftlichen Forschung Grant
  ESP253-B (O.O.B.)
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Lada H.
  full_name: Isakova, Lada H.
  last_name: Isakova
- first_name: Elizaveta
  full_name: Streltsova, Elizaveta
  id: 57a170da-dc96-11ea-b7c8-ab3565071bf7
  last_name: Streltsova
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Peter K.
  full_name: Vlasov, Peter K.
  last_name: Vlasov
- first_name: Fyodor
  full_name: Kondrashov, Fyodor
  id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
  last_name: Kondrashov
  orcid: 0000-0001-8243-4694
citation:
  ama: Isakova LH, Streltsova E, Bochkareva O, Vlasov PK, Kondrashov F. Descent from
    a common ancestor restricts exploration of protein sequence space. <i>Proceedings
    of the National Academy of Sciences</i>. 2026;123(14):e2532018123. doi:<a href="https://doi.org/10.1073/pnas.2532018123">10.1073/pnas.2532018123</a>
  apa: Isakova, L. H., Streltsova, E., Bochkareva, O., Vlasov, P. K., &#38; Kondrashov,
    F. (2026). Descent from a common ancestor restricts exploration of protein sequence
    space. <i>Proceedings of the National Academy of Sciences</i>. National Academy
    of Sciences. <a href="https://doi.org/10.1073/pnas.2532018123">https://doi.org/10.1073/pnas.2532018123</a>
  chicago: Isakova, Lada H., Elizaveta Streltsova, Olga Bochkareva, Peter K. Vlasov,
    and Fyodor Kondrashov. “Descent from a Common Ancestor Restricts Exploration of
    Protein Sequence Space.” <i>Proceedings of the National Academy of Sciences</i>.
    National Academy of Sciences, 2026. <a href="https://doi.org/10.1073/pnas.2532018123">https://doi.org/10.1073/pnas.2532018123</a>.
  ieee: L. H. Isakova, E. Streltsova, O. Bochkareva, P. K. Vlasov, and F. Kondrashov,
    “Descent from a common ancestor restricts exploration of protein sequence space,”
    <i>Proceedings of the National Academy of Sciences</i>, vol. 123, no. 14. National
    Academy of Sciences, p. e2532018123, 2026.
  ista: Isakova LH, Streltsova E, Bochkareva O, Vlasov PK, Kondrashov F. 2026. Descent
    from a common ancestor restricts exploration of protein sequence space. Proceedings
    of the National Academy of Sciences. 123(14), e2532018123.
  mla: Isakova, Lada H., et al. “Descent from a Common Ancestor Restricts Exploration
    of Protein Sequence Space.” <i>Proceedings of the National Academy of Sciences</i>,
    vol. 123, no. 14, National Academy of Sciences, 2026, p. e2532018123, doi:<a href="https://doi.org/10.1073/pnas.2532018123">10.1073/pnas.2532018123</a>.
  short: L.H. Isakova, E. Streltsova, O. Bochkareva, P.K. Vlasov, F. Kondrashov, Proceedings
    of the National Academy of Sciences 123 (2026) e2532018123.
date_created: 2026-04-12T22:01:47Z
date_published: 2026-04-07T00:00:00Z
date_updated: 2026-05-04T06:57:31Z
day: '07'
ddc:
- '570'
department:
- _id: UlWa
doi: 10.1073/pnas.2532018123
external_id:
  pmid:
  - '41915737'
file:
- access_level: open_access
  checksum: 11b7a13a359e302498b2367906093a6b
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T06:46:31Z
  date_updated: 2026-05-04T06:46:31Z
  file_id: '21783'
  file_name: 2026_PNAS_Isakova.pdf
  file_size: 3355016
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T06:46:31Z
has_accepted_license: '1'
intvolume: '       123'
issue: '14'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: e2532018123
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Descent from a common ancestor restricts exploration of protein sequence space
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 123
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21708'
abstract:
- lang: eng
  text: On October 4, 2023, a proglacial lake named the South Lhonak lake was the
    source of a catastrophic Glacier Lake Outburst Flood (GLOF) in the Teesta river
    basin area, resulting in 24 fatalities and leaving over 70 persons missing. The
    GLOF also destroyed 13 bridges and a major hydropower plant in the Chungthang
    region. Over 60,000 individuals in four districts of Sikkim were impacted by this
    GLOF event. This study examines the factors that led to the GLOF event. Our study
    shows that the cause of this GLOF was initiated by a landslide, that dumped a
    substantial amount (~ 38.31 million m3) of debris into the South Lhonak Lake.
    Furthermore, the glacier that was connected to the lake, lost a big chunk of ice
    mass (~ 7 million m3) due to calving. The combination of these two processes led
    to the collapse of the left lateral moraine that consequently generated flood
    waves which breached the terminal moraine dam of the lake. We recommend monitoring
    land subsidence and calving events for large proglacial lakes to prevent the disastrous
    consequences of such GLOFs in the future.
acknowledgement: This work was carried out independently without the support of any
  funding agency or sponsors. The authors thank the SARPROZ team for providing an
  evaluation license for the MTInSAR processing software.
article_number: '9741'
article_processing_charge: Yes
article_type: original
author:
- first_name: Litan Kumar
  full_name: Mohanty, Litan Kumar
  last_name: Mohanty
- first_name: Prateek
  full_name: Gantayat, Prateek
  id: 02734268-3e8d-11ef-80a1-cec4a088d004
  last_name: Gantayat
- first_name: Ankur
  full_name: Dixit, Ankur
  last_name: Dixit
- first_name: Manik
  full_name: Das Adhikari, Manik
  last_name: Das Adhikari
- first_name: Rahul
  full_name: Biswas, Rahul
  last_name: Biswas
- first_name: Vivek Kumar
  full_name: Singh, Vivek Kumar
  last_name: Singh
citation:
  ama: Mohanty LK, GANTAYAT P, Dixit A, Das Adhikari M, Biswas R, Singh VK. Sequence
    of events that led to the South Lhonak lake outburst flood in Sikkim, India. <i>Scientific
    Reports</i>. 2026;16. doi:<a href="https://doi.org/10.1038/s41598-026-35895-7">10.1038/s41598-026-35895-7</a>
  apa: Mohanty, L. K., GANTAYAT, P., Dixit, A., Das Adhikari, M., Biswas, R., &#38;
    Singh, V. K. (2026). Sequence of events that led to the South Lhonak lake outburst
    flood in Sikkim, India. <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-026-35895-7">https://doi.org/10.1038/s41598-026-35895-7</a>
  chicago: Mohanty, Litan Kumar, PRATEEK GANTAYAT, Ankur Dixit, Manik Das Adhikari,
    Rahul Biswas, and Vivek Kumar Singh. “Sequence of Events That Led to the South
    Lhonak Lake Outburst Flood in Sikkim, India.” <i>Scientific Reports</i>. Springer
    Nature, 2026. <a href="https://doi.org/10.1038/s41598-026-35895-7">https://doi.org/10.1038/s41598-026-35895-7</a>.
  ieee: L. K. Mohanty, P. GANTAYAT, A. Dixit, M. Das Adhikari, R. Biswas, and V. K.
    Singh, “Sequence of events that led to the South Lhonak lake outburst flood in
    Sikkim, India,” <i>Scientific Reports</i>, vol. 16. Springer Nature, 2026.
  ista: Mohanty LK, GANTAYAT P, Dixit A, Das Adhikari M, Biswas R, Singh VK. 2026.
    Sequence of events that led to the South Lhonak lake outburst flood in Sikkim,
    India. Scientific Reports. 16, 9741.
  mla: Mohanty, Litan Kumar, et al. “Sequence of Events That Led to the South Lhonak
    Lake Outburst Flood in Sikkim, India.” <i>Scientific Reports</i>, vol. 16, 9741,
    Springer Nature, 2026, doi:<a href="https://doi.org/10.1038/s41598-026-35895-7">10.1038/s41598-026-35895-7</a>.
  short: L.K. Mohanty, P. GANTAYAT, A. Dixit, M. Das Adhikari, R. Biswas, V.K. Singh,
    Scientific Reports 16 (2026).
corr_author: '1'
date_created: 2026-04-12T22:01:48Z
date_published: 2026-03-24T00:00:00Z
date_updated: 2026-05-04T07:54:53Z
day: '24'
ddc:
- '550'
department:
- _id: FrPe
doi: 10.1038/s41598-026-35895-7
external_id:
  pmid:
  - '41876546'
file:
- access_level: open_access
  checksum: cf13f61c38609ce6518d74562319c35f
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T07:24:59Z
  date_updated: 2026-05-04T07:24:59Z
  file_id: '21785'
  file_name: 2026_ScienceAdv_Mohanty.pdf
  file_size: 17406006
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T07:24:59Z
has_accepted_license: '1'
intvolume: '        16'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Scientific Reports
publication_identifier:
  eissn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sequence of events that led to the South Lhonak lake outburst flood in Sikkim,
  India
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21703'
abstract:
- lang: eng
  text: Altermagnetism has recently emerged as a distinct class of collinear antiferromagnets
    that break time-reversal symmetry, exhibiting a host of novel properties. Applied
    strain has attracted particular attention as a key tuning parameter for altermagnets.
    Although several experimental studies have demonstrated the preparation of single-domain
    states through a combination of applied strain and magnetic field, the route to
    such states remains unclear. Here, we use magneto-optical measurements on single
    crystals of MnTe under applied strain to show that, in contrast to previous reports,
    strain acts primarily to rotate the Néel vector L continuously. Since the orientation
    of L determines the magnetic point group symmetry, this continuous rotation effectively
    tunes the symmetry and its associated physical properties. Furthermore, we demonstrate
    that built-in strain in free-standing crystals is sufficient to pin L into continuous
    textures over millimeter length scales. Together, these results provide guidance
    for future device design and open the door to leveraging the Néel vector orientation
    as a tunable degree of freedom in spintronic applications.
acknowledgement: "This research was primarily funded by the Quantum Materials (KC2202)
  program under the U.S. Department of Energy, Office of Science, Office of Basic
  Energy Sciences, Materials Sciences and Engineering Division under Contract No.
  DE-AC02-05CH11231, which supported the experimental and theoretical work at the
  LBNL and UC Berkeley. N.J.G., R. B. R., and I.I.M.\r\nwere supported by Army Research
  Office under Cooperative Agreement Number W911NF- 22-2-0173. H.M.L.N. and V.S. acknowledge
  funding through the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)
  through Grant No. TRR288—422213477, Project No. A10. H.M.L.N. acknowledges financial
  support from the Max Planck Society. Research in Dresden benefits from the environment
  provided by the DFG Cluster of Excellence ctd.qmat (EXC2147, Project ID 390858490)."
article_number: '2604.07653'
article_processing_charge: No
arxiv: 1
author:
- first_name: Alex Liebman-Peláez
  full_name: Alex Liebman-Peláez, Alex Liebman-Peláez
  last_name: Alex Liebman-Peláez
- first_name: Jon
  full_name: Kruppe, Jon
  last_name: Kruppe
- first_name: Resham Babu
  full_name: Regmi, Resham Babu
  last_name: Regmi
- first_name: Nirmal J.
  full_name: Ghimire, Nirmal J.
  last_name: Ghimire
- first_name: Yue
  full_name: Sun, Yue
  last_name: Sun
- first_name: Igor I.
  full_name: Mazin, Igor I.
  last_name: Mazin
- first_name: Hilary M. L.
  full_name: Noad, Hilary M. L.
  last_name: Noad
- first_name: James
  full_name: Analytis, James
  last_name: Analytis
- first_name: Veronika
  full_name: Sunko, Veronika
  id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
  last_name: Sunko
  orcid: 0000-0003-2724-3523
- first_name: Joseph
  full_name: Orenstein, Joseph
  last_name: Orenstein
citation:
  ama: Alex Liebman-Peláez AL-P, Kruppe J, Regmi RB, et al. Strain continuously rotates
    the Néel vector in altermagnetic MnTe. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2604.07653">10.48550/arXiv.2604.07653</a>
  apa: Alex Liebman-Peláez, A. L.-P., Kruppe, J., Regmi, R. B., Ghimire, N. J., Sun,
    Y., Mazin, I. I., … Orenstein, J. (n.d.). Strain continuously rotates the Néel
    vector in altermagnetic MnTe. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2604.07653">https://doi.org/10.48550/arXiv.2604.07653</a>
  chicago: Alex Liebman-Peláez, Alex Liebman-Peláez, Jon Kruppe, Resham Babu Regmi,
    Nirmal J. Ghimire, Yue Sun, Igor I. Mazin, Hilary M. L. Noad, James Analytis,
    Veronika Sunko, and Joseph Orenstein. “Strain Continuously Rotates the Néel Vector
    in Altermagnetic MnTe.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2604.07653">https://doi.org/10.48550/arXiv.2604.07653</a>.
  ieee: A. L.-P. Alex Liebman-Peláez <i>et al.</i>, “Strain continuously rotates the
    Néel vector in altermagnetic MnTe,” <i>arXiv</i>. .
  ista: Alex Liebman-Peláez AL-P, Kruppe J, Regmi RB, Ghimire NJ, Sun Y, Mazin II,
    Noad HML, Analytis J, Sunko V, Orenstein J. Strain continuously rotates the Néel
    vector in altermagnetic MnTe. arXiv, 2604.07653.
  mla: Alex Liebman-Peláez, Alex Liebman-Peláez, et al. “Strain Continuously Rotates
    the Néel Vector in Altermagnetic MnTe.” <i>ArXiv</i>, 2604.07653, doi:<a href="https://doi.org/10.48550/arXiv.2604.07653">10.48550/arXiv.2604.07653</a>.
  short: A.L.-P. Alex Liebman-Peláez, J. Kruppe, R.B. Regmi, N.J. Ghimire, Y. Sun,
    I.I. Mazin, H.M.L. Noad, J. Analytis, V. Sunko, J. Orenstein, ArXiv (n.d.).
date_created: 2026-04-10T14:17:21Z
date_published: 2026-04-08T00:00:00Z
date_updated: 2026-05-04T06:27:12Z
day: '08'
department:
- _id: VeSu
doi: 10.48550/arXiv.2604.07653
external_id:
  arxiv:
  - '2604.07653'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2604.07653
month: '04'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Strain continuously rotates the Néel vector in altermagnetic MnTe
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21711'
abstract:
- lang: eng
  text: 'Background: Low-volume trapping columns are essential for sample enrichment,
    desalting, and injection profile focusing on nano-LC–MS-based proteomics. They
    enable higher sample loading, improve chromatographic performance, and protect
    the analytical column by removing salts and contaminants. Recently, monolithic
    trap columns with micropillar architecture have emerged as alternatives to conventionally
    packed traps. This study compares the performance of a packed and a micropillar
    monolithic trap column for the analysis of tryptic peptides. Methods: A tryptic
    digest of HeLa cell lysate was analyzed under identical LC–MS conditions using
    both trap types. Peptides were detected at 214 nm and analyzed by nano-ESI on
    a Q Exactive Plus Orbitrap. Data were searched against the human UniProt database
    (February 2023) using FragPipe v20.0, and statistical evaluation of MaxLFQ intensities
    was performed in Perseus using Welch’s t-test and clustering analysis. Results:
    Over 2500 proteins were identified with both setups. The packed trap column yielded
    more total peptides, particularly those with post-translational modifications
    and higher hydrophilicity, whereas the monolithic column favored peptides of intermediate
    hydrophobicity. Chromatographic profiles confirmed a slight reduction in the trapping
    efficiency of hydrophilic peptides by the monolithic trap. Conclusions: Trap column
    design significantly influences peptide recovery and proteome coverage.'
acknowledgement: 'The authors thank Gábor Tóth, Uppsala University, Sweden, and Armel
  Nicolas, Institute for Science and Technology Austria, for their support. This research
  was conducted during a student residency in Vienna under the auspices of OeAD. ZI:
  ICM-2016-03196.'
article_number: '10'
article_processing_charge: Yes
article_type: original
author:
- first_name: Jadranka
  full_name: Miletić Vukajlović, Jadranka
  last_name: Miletić Vukajlović
- first_name: Bojana
  full_name: Ilić, Bojana
  last_name: Ilić
- first_name: Bella
  full_name: Bruszel, Bella
  id: 70abbbb3-88ea-11ec-8e0a-e8c939944834
  last_name: Bruszel
- first_name: Tanja
  full_name: Panić-Janković, Tanja
  last_name: Panić-Janković
- first_name: Goran
  full_name: Mitulović, Goran
  last_name: Mitulović
citation:
  ama: Miletić Vukajlović J, Ilić B, Bruszel B, Panić-Janković T, Mitulović G. Comparison
    of the trapping efficiency for tryptic peptides on particle-packed and micro-pillar
    trap columns for proteomics analyses. <i>Proteomes</i>. 2026;14(1). doi:<a href="https://doi.org/10.3390/proteomes14010010">10.3390/proteomes14010010</a>
  apa: Miletić Vukajlović, J., Ilić, B., Bruszel, B., Panić-Janković, T., &#38; Mitulović,
    G. (2026). Comparison of the trapping efficiency for tryptic peptides on particle-packed
    and micro-pillar trap columns for proteomics analyses. <i>Proteomes</i>. MDPI.
    <a href="https://doi.org/10.3390/proteomes14010010">https://doi.org/10.3390/proteomes14010010</a>
  chicago: Miletić Vukajlović, Jadranka, Bojana Ilić, Bella Bruszel, Tanja Panić-Janković,
    and Goran Mitulović. “Comparison of the Trapping Efficiency for Tryptic Peptides
    on Particle-Packed and Micro-Pillar Trap Columns for Proteomics Analyses.” <i>Proteomes</i>.
    MDPI, 2026. <a href="https://doi.org/10.3390/proteomes14010010">https://doi.org/10.3390/proteomes14010010</a>.
  ieee: J. Miletić Vukajlović, B. Ilić, B. Bruszel, T. Panić-Janković, and G. Mitulović,
    “Comparison of the trapping efficiency for tryptic peptides on particle-packed
    and micro-pillar trap columns for proteomics analyses,” <i>Proteomes</i>, vol.
    14, no. 1. MDPI, 2026.
  ista: Miletić Vukajlović J, Ilić B, Bruszel B, Panić-Janković T, Mitulović G. 2026.
    Comparison of the trapping efficiency for tryptic peptides on particle-packed
    and micro-pillar trap columns for proteomics analyses. Proteomes. 14(1), 10.
  mla: Miletić Vukajlović, Jadranka, et al. “Comparison of the Trapping Efficiency
    for Tryptic Peptides on Particle-Packed and Micro-Pillar Trap Columns for Proteomics
    Analyses.” <i>Proteomes</i>, vol. 14, no. 1, 10, MDPI, 2026, doi:<a href="https://doi.org/10.3390/proteomes14010010">10.3390/proteomes14010010</a>.
  short: J. Miletić Vukajlović, B. Ilić, B. Bruszel, T. Panić-Janković, G. Mitulović,
    Proteomes 14 (2026).
date_created: 2026-04-12T22:01:49Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-05-04T10:36:21Z
day: '01'
ddc:
- '540'
department:
- _id: MassSpec
doi: 10.3390/proteomes14010010
external_id:
  pmid:
  - '41893725'
file:
- access_level: open_access
  checksum: 1e0c66bbf4b6e0be626a8639ea664b63
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T10:31:35Z
  date_updated: 2026-05-04T10:31:35Z
  file_id: '21790'
  file_name: 2026_Proteomes_Vukajlovic.pdf
  file_size: 1009723
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T10:31:35Z
has_accepted_license: '1'
intvolume: '        14'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Proteomes
publication_identifier:
  eissn:
  - 2227-7382
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Comparison of the trapping efficiency for tryptic peptides on particle-packed
  and micro-pillar trap columns for proteomics analyses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21712'
abstract:
- lang: eng
  text: Supermassive black hole binary (SMBHB) systems are expected to form as a consequence
    of galaxy mergers. At subparsec separations, SMBHBs can be identified as quasars
    with periodic variability, with previous periodicity searches uncovering significant
    candidates. However, these searches focused primarily on sinusoidal signals, while
    theoretical models and hydrodynamical simulations predict that binaries produce
    more complex non-sinusoidal pulse shapes. Here we examine the efficacy of the
    Lomb–Scargle periodogram (LSP; one of the most popular tools for periodicity searches
    in unevenly sampled lightcurves) to detect periodicities with a sawtooth shape
    mimicking results of hydrodynamical simulations. We simulate idealized well-sampled
    lightcurves, lightcurves that mimic the data in the Palomar Transient Factory
    (PTF) analyzed in M. Charisi et al. (2016), and lightcurves that resemble our
    expectations for single-band data in the upcoming Legacy Survey of Space and Time
    (LSST) of the Rubin Observatory. We approximate quasar variability with a damped
    random walk (DRW) model, inject sinusoidal and sawtooth pulse shapes, and assess
    their statistical significance. We find that in the presence of red noise, the
    LSP detects a relatively low fraction of the sinusoidal signals (∼45%, ∼24%, and
    ∼23%, in the PTF-like, idealized, and LSST-like lightcurves, respectively). The
    fraction is significantly reduced for sawtooth periodicity (with only ∼9% in PTF-like
    and ∼1% in idealized and LSST-like lightcurves). These low recovery rates imply
    that previous searches have missed the large majority of binaries. They also have
    significant implications for the detection of SMBHBs in upcoming LSST necessitating
    the development of advanced tools that go beyond the simple LSP.
acknowledgement: M.C. acknowledges support by the European Union (ERC; MMMonsters,
  101117624). This work was also supported in part by NASA grants 80NSSC24K0440 and
  80NSSC22K0822. This research used the resources of the Center for Institutional
  Research Computing at Washington State University.
article_number: '316'
article_processing_charge: Yes
article_type: original
author:
- first_name: Allison
  full_name: Lin, Allison
  last_name: Lin
- first_name: Maria
  full_name: Charisi, Maria
  last_name: Charisi
- first_name: Zoltán
  full_name: Haiman, Zoltán
  id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
  last_name: Haiman
  orcid: 0000-0003-3633-5403
citation:
  ama: Lin A, Charisi M, Haiman Z. Lomb-scargle periodogram struggles with non-sinusoidal
    supermassive Black Hole binary signatures in quasar lightcurves. <i>The Astrophysical
    Journal</i>. 2026;997(2). doi:<a href="https://doi.org/10.3847/1538-4357/ae29a7">10.3847/1538-4357/ae29a7</a>
  apa: Lin, A., Charisi, M., &#38; Haiman, Z. (2026). Lomb-scargle periodogram struggles
    with non-sinusoidal supermassive Black Hole binary signatures in quasar lightcurves.
    <i>The Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae29a7">https://doi.org/10.3847/1538-4357/ae29a7</a>
  chicago: Lin, Allison, Maria Charisi, and Zoltán Haiman. “Lomb-Scargle Periodogram
    Struggles with Non-Sinusoidal Supermassive Black Hole Binary Signatures in Quasar
    Lightcurves.” <i>The Astrophysical Journal</i>. IOP Publishing, 2026. <a href="https://doi.org/10.3847/1538-4357/ae29a7">https://doi.org/10.3847/1538-4357/ae29a7</a>.
  ieee: A. Lin, M. Charisi, and Z. Haiman, “Lomb-scargle periodogram struggles with
    non-sinusoidal supermassive Black Hole binary signatures in quasar lightcurves,”
    <i>The Astrophysical Journal</i>, vol. 997, no. 2. IOP Publishing, 2026.
  ista: Lin A, Charisi M, Haiman Z. 2026. Lomb-scargle periodogram struggles with
    non-sinusoidal supermassive Black Hole binary signatures in quasar lightcurves.
    The Astrophysical Journal. 997(2), 316.
  mla: Lin, Allison, et al. “Lomb-Scargle Periodogram Struggles with Non-Sinusoidal
    Supermassive Black Hole Binary Signatures in Quasar Lightcurves.” <i>The Astrophysical
    Journal</i>, vol. 997, no. 2, 316, IOP Publishing, 2026, doi:<a href="https://doi.org/10.3847/1538-4357/ae29a7">10.3847/1538-4357/ae29a7</a>.
  short: A. Lin, M. Charisi, Z. Haiman, The Astrophysical Journal 997 (2026).
date_created: 2026-04-12T22:01:49Z
date_published: 2026-02-01T00:00:00Z
date_updated: 2026-05-04T10:26:59Z
day: '01'
ddc:
- '520'
department:
- _id: ZoHa
doi: 10.3847/1538-4357/ae29a7
file:
- access_level: open_access
  checksum: 5162d1539ef7d10927ef73d8b4500017
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T10:24:49Z
  date_updated: 2026-05-04T10:24:49Z
  file_id: '21789'
  file_name: 2026_AstrophysicalJour_Lin.pdf
  file_size: 2619679
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T10:24:49Z
has_accepted_license: '1'
intvolume: '       997'
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Lomb-scargle periodogram struggles with non-sinusoidal supermassive Black Hole
  binary signatures in quasar lightcurves
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 997
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21707'
abstract:
- lang: eng
  text: Structural and functional differences between brain hemispheres are a common
    feature of animal nervous systems with reduced bilateral asymmetry often linked
    to impaired cognitive performance. How neuronal left-right asymmetry is initiated
    and integrated into a bilaterally symmetrical ground pattern is poorly understood.
    Here, we show that the directional asymmetry of a Drosophila central brain circuit
    originates from axonal interactions of two types of bilateral pioneer neurons.
    Subsequent recruitment of neighboring neurons into the asymmetric neuropil primordium
    results in hemisphere-specific microcircuits. Circuit lateralization requires
    dynamic expression of the cell adhesion molecule Fasciclin 2 to maintain structural
    plasticity in axonal remodeling. Reduced circuit asymmetry following cell type–specific
    Fasciclin 2 manipulation affects adult brain function. These results reveal an
    unexpected degree of developmental plasticity of late-born Drosophila neurons
    in the formation of a circuit node via the lateralized recruitment of symmetric
    circuit components.
acknowledgement: "We thank I. Salecker (Flybow), B. Altenhein (Fas2-Gal4Mz507), A.
  Nose (UAS-intra- and extra-Fas2::YFP), and C. S. Goodman (UAS-Fas2PEST+/−), as well
  as the Bloomington Stock Center for providing materials and fly stocks. We thank
  S. Waddell and the lab, especially B. Senapati, for providing the opportunity to
  conduct memory experiments at the CNCB, University of Oxford, and for supervision
  and discussions during this period. We also thank W. Kallina, S. Ilgerl, D. Bartel,
  A. Grimm, and A. Litin for technical support and the Hummel Lab for stimulating
  discussions and critical comments on the manuscript. We acknowledge the early exploratory
  work of A. Mattia, S. Trkulja, C. Schönherr, S. Bogner, B. Simpson, L. Tomasek,
  H. Roth, H. Vokač, R. Gredler, F. Kapelari, T. Kolarova, C. Ignitsch, Á. Bautista-Soldevila,
  and M. Kassem.\r\nThis research was funded by the University of Vienna, the Vienna
  Doctoral School Cognition, Behaviour and Neuroscience (uni:docs fellowship) (to
  J.W.M.) and by the Austrian Science Fund (FWF) (Cluster of Excellence Neuronal Circuits
  in Health and Disease, grant DOI 10.55776/COE16; https://www.fwf.ac.at/en/research-radar/10.55776/COE16)
  (to T.H.). For open access purposes, the author has applied a CC BY public copyright
  license to any author-accepted manuscript version arising from this submission."
article_number: eaea6020
article_processing_charge: Yes
article_type: original
author:
- first_name: Johann W.
  full_name: Markovitsch, Johann W.
  last_name: Markovitsch
- first_name: Daniel
  full_name: Mitić, Daniel
  last_name: Mitić
- first_name: Alisa
  full_name: Del Pilar Jiménez García, Alisa
  last_name: Del Pilar Jiménez García
- first_name: Alsberga
  full_name: Zane, Alsberga
  id: 60f7509a-f652-11ea-9d86-b963d6490d7c
  last_name: Zane
  orcid: 0009-0003-0415-7603
- first_name: Sarah
  full_name: Kainz, Sarah
  last_name: Kainz
- first_name: Rashmit
  full_name: Kaur, Rashmit
  last_name: Kaur
- first_name: Thomas
  full_name: Hummel, Thomas
  last_name: Hummel
citation:
  ama: Markovitsch JW, Mitić D, Del Pilar Jiménez García A, et al. Sequential formation
    of Drosophila circuit asymmetry via prolonged structural plasticity. <i>Science
    Advances</i>. 2026;12(13). doi:<a href="https://doi.org/10.1126/sciadv.aea6020">10.1126/sciadv.aea6020</a>
  apa: Markovitsch, J. W., Mitić, D., Del Pilar Jiménez García, A., Zane, A., Kainz,
    S., Kaur, R., &#38; Hummel, T. (2026). Sequential formation of Drosophila circuit
    asymmetry via prolonged structural plasticity. <i>Science Advances</i>. American
    Association for the Advancement of Science. <a href="https://doi.org/10.1126/sciadv.aea6020">https://doi.org/10.1126/sciadv.aea6020</a>
  chicago: Markovitsch, Johann W., Daniel Mitić, Alisa Del Pilar Jiménez García, Alsberga
    Zane, Sarah Kainz, Rashmit Kaur, and Thomas Hummel. “Sequential Formation of Drosophila
    Circuit Asymmetry via Prolonged Structural Plasticity.” <i>Science Advances</i>.
    American Association for the Advancement of Science, 2026. <a href="https://doi.org/10.1126/sciadv.aea6020">https://doi.org/10.1126/sciadv.aea6020</a>.
  ieee: J. W. Markovitsch <i>et al.</i>, “Sequential formation of Drosophila circuit
    asymmetry via prolonged structural plasticity,” <i>Science Advances</i>, vol.
    12, no. 13. American Association for the Advancement of Science, 2026.
  ista: Markovitsch JW, Mitić D, Del Pilar Jiménez García A, Zane A, Kainz S, Kaur
    R, Hummel T. 2026. Sequential formation of Drosophila circuit asymmetry via prolonged
    structural plasticity. Science Advances. 12(13), eaea6020.
  mla: Markovitsch, Johann W., et al. “Sequential Formation of Drosophila Circuit
    Asymmetry via Prolonged Structural Plasticity.” <i>Science Advances</i>, vol.
    12, no. 13, eaea6020, American Association for the Advancement of Science, 2026,
    doi:<a href="https://doi.org/10.1126/sciadv.aea6020">10.1126/sciadv.aea6020</a>.
  short: J.W. Markovitsch, D. Mitić, A. Del Pilar Jiménez García, A. Zane, S. Kainz,
    R. Kaur, T. Hummel, Science Advances 12 (2026).
date_created: 2026-04-12T22:01:48Z
date_published: 2026-03-27T00:00:00Z
date_updated: 2026-05-04T09:18:06Z
day: '27'
ddc:
- '570'
department:
- _id: MiSi
- _id: GradSch
doi: 10.1126/sciadv.aea6020
file:
- access_level: open_access
  checksum: 3eed470fe73e53d2a8d55d6fba6934e3
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T09:16:36Z
  date_updated: 2026-05-04T09:16:36Z
  file_id: '21786'
  file_name: 2026_ScienceAdv_Markovitsch.pdf
  file_size: 11101140
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T09:16:36Z
has_accepted_license: '1'
intvolume: '        12'
issue: '13'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Science Advances
publication_identifier:
  eissn:
  - 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sequential formation of Drosophila circuit asymmetry via prolonged structural
  plasticity
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21713'
abstract:
- lang: eng
  text: GW231123 represents the most massive binary–black hole merger detected to
    date, lying firmly within, or even above, the pair-instability mass gap. The component
    spins are both exceptionally high (a1 = 0.90 +0.10/-0.19, a2 = 0.80 +0.20/-0.51),
    which is difficult to explain with repeated mergers. Here we show that the black
    hole spin vectors are closely aligned with each other while significantly tilted
    relative to the binary’s orbital angular momentum, pointing to a common accretion-driven
    origin. We examine astrophysical formation channels capable of producing near-equal,
    high-mass, and mutually aligned spins consistent with GW231123—particularly binaries
    embedded in AGN disks and Population III remnants, which grew via coherent misaligned
    gas accretion. We further argue that other high-mass, high-spin events, e.g.,
    GW190521, may share a similar evolutionary pathway. These findings underscore
    the critical role of sustained, coherent accretion in shaping the most extreme
    black hole binaries.
acknowledgement: The authors thank Davide Gerosa and Matthew Mould for valuable suggestions.
  We are grateful for support by the National Science Foundation under grant No. PHY-2309024
  (I.B.) and by NASA under grants 80NSSC22K0822 and 80NSSC24K0440 (Z.H.). We used
  OpenAI’s ChatGPT (OpenAI 2025) during the preparation of this manuscript. This material
  is based upon work supported by NSF’s LIGO Laboratory, which is a major facility
  fully funded by the National Science Foundation.
article_number: L44
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Imre
  full_name: Bartos, Imre
  last_name: Bartos
- first_name: Zoltán
  full_name: Haiman, Zoltán
  id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
  last_name: Haiman
  orcid: 0000-0003-3633-5403
citation:
  ama: 'Bartos I, Haiman Z. Accretion is all you need: Black Hole spin alignment in
    merger GW231123 indicates accretion pathway. <i>The Astrophysical Journal Letters</i>.
    2026;996(2). doi:<a href="https://doi.org/10.3847/2041-8213/ae2bff">10.3847/2041-8213/ae2bff</a>'
  apa: 'Bartos, I., &#38; Haiman, Z. (2026). Accretion is all you need: Black Hole
    spin alignment in merger GW231123 indicates accretion pathway. <i>The Astrophysical
    Journal Letters</i>. IOP Publishing. <a href="https://doi.org/10.3847/2041-8213/ae2bff">https://doi.org/10.3847/2041-8213/ae2bff</a>'
  chicago: 'Bartos, Imre, and Zoltán Haiman. “Accretion Is All You Need: Black Hole
    Spin Alignment in Merger GW231123 Indicates Accretion Pathway.” <i>The Astrophysical
    Journal Letters</i>. IOP Publishing, 2026. <a href="https://doi.org/10.3847/2041-8213/ae2bff">https://doi.org/10.3847/2041-8213/ae2bff</a>.'
  ieee: 'I. Bartos and Z. Haiman, “Accretion is all you need: Black Hole spin alignment
    in merger GW231123 indicates accretion pathway,” <i>The Astrophysical Journal
    Letters</i>, vol. 996, no. 2. IOP Publishing, 2026.'
  ista: 'Bartos I, Haiman Z. 2026. Accretion is all you need: Black Hole spin alignment
    in merger GW231123 indicates accretion pathway. The Astrophysical Journal Letters.
    996(2), L44.'
  mla: 'Bartos, Imre, and Zoltán Haiman. “Accretion Is All You Need: Black Hole Spin
    Alignment in Merger GW231123 Indicates Accretion Pathway.” <i>The Astrophysical
    Journal Letters</i>, vol. 996, no. 2, L44, IOP Publishing, 2026, doi:<a href="https://doi.org/10.3847/2041-8213/ae2bff">10.3847/2041-8213/ae2bff</a>.'
  short: I. Bartos, Z. Haiman, The Astrophysical Journal Letters 996 (2026).
corr_author: '1'
date_created: 2026-04-12T22:01:49Z
date_published: 2026-01-10T00:00:00Z
date_updated: 2026-05-04T09:54:18Z
day: '10'
ddc:
- '520'
department:
- _id: ZoHa
doi: 10.3847/2041-8213/ae2bff
external_id:
  arxiv:
  - '2508.08558'
file:
- access_level: open_access
  checksum: ac46ba3d13f0150ccbc42665bed3ae47
  content_type: application/pdf
  creator: dernst
  date_created: 2026-05-04T09:49:53Z
  date_updated: 2026-05-04T09:49:53Z
  file_id: '21788'
  file_name: 2026_AstrophysicalJourLetters_Bartos.pdf
  file_size: 866725
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T09:49:53Z
has_accepted_license: '1'
intvolume: '       996'
issue: '2'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal Letters
publication_identifier:
  eissn:
  - 2041-8213
  issn:
  - 2041-8205
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Accretion is all you need: Black Hole spin alignment in merger GW231123 indicates
  accretion pathway'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 996
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '21710'
abstract:
- lang: eng
  text: "Early results from JWST suggest that Epoch of Reionization (EoR) galaxies
    produce copious ionizing photons, which, if they escape efficiently, could cause
    reionization to occur too early. We study this problem using JWST imaging and
    prism spectroscopy for 412 galaxies at 4.5 < z < 9.0. We fit these data simultaneously
    with stellar population and nebular emission models that include a parameter for
    the fraction of ionizing photons that escape the galaxy, fesc. We find that the
    ionization production efficiency, ξion = Q(H0)/LUV, increases with redshift and
    decreasing UV luminosity, but shows significant scatter, (log ion z, MUV) 0.3
    dex. The inferred escape fractions averaged over the population are low, ranging
    from〈fesc〉 ≃ 2.6% ± 1.4% at 6 < z < 9 to 6.5% ± 2.2% at 4.5 < z < 6, with weak
    or no indication of evolution with redshift. This implies that in our models most
    of the ionizing photons need to be absorbed to account for the nebular emission.
    We compute the impact of our results on reionization, including the distributions
    for ξion and fesc, and the evolution and uncertainty of the UV luminosity function.
    Considering galaxies brighter than MUV < −16 mag would produce an intergalactic
    medium hydrogen-ionized fraction of xe = 0.5 at 5.3 < z < 5.8, possibly too late
    compared to constraints from from quasistellar\r\nobject (QSO) sight lines. Including
    fainter galaxies, MUV < −14 mag, we obtain xe = 0.5 at 6.0 < z < 8.1, fully consistent
    with QSO and cosmic microwave background data. This implies that EoR galaxies
    produce plenty of ionizing photons, but that these do not efficiently escape.
    This may be a result of high gas column densities combined with burstier star
    formation histories, which limit the time massive stars are able to clear channels
    through the gas for ionizing photons to escape."
acknowledgement: "We wish to thank our colleagues in the CEERS collaboration for their
  hard work and valuable contributions on this project. We extend our sincerest thanks
  to the anonymous referee whose critical and constructive report improved the quality
  of this manuscript. We also thank the JADES team for providing an excellent dataset
  for science. We with to thank colleagues for valuable discussions, feedback, and
  suggestions, including John Chisholm, Kevin Huffenberger, Jessica\r\nMeh, Julian
  Muñoz, Irene Shivaei, Justin Spilker, Aaron Smith, and Romain Teyssier.\r\nPortions
  of this research were conducted with the advanced computing resources provided by
  Texas A&M High Performance Research Computing (HPRC, http://hprc.tamu.edu). This
  work benefited from support from the George P. and Cynthia Woods Mitchell Institute
  for Fundamental Physics and Astronomy at Texas A&M University. CP thanks Marsha
  and Ralph Schilling for generous support of this research. This work was partially
  support by the Future Investigators in NASA Earth and Space Science and Technology
  (FINESST) program grant No. 80NSSC23K1487. R.A. acknowledges support of grant PID2023-147386NB-I00
  funded by MICIU/AEI/10.13039/501100011033 and by ERDF/EU, and the Severo Ochoa grant
  CEX2021-001131-S funded by MCIN/AEI/10.13039/50110001103. A.C.C. acknowledges support
  from a UKRI Frontier Research Guarantee Grant (PI Carnall; grant reference EP/Y037065/1)
  This work acknowledges support from the NASA/ESA/CSA James Webb Space Telescope
  through the\r\nSpace Telescope Science Institute, which is operated by the Association
  of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-03127.
  Support for program JWST-ERS-01345.009-A, JWST-GO-02079.013-A, JWST-GO-06368.011-A,
  and JWST-GO-01837.030-A, was provided by NASA through a grant from the Space Telescope
  Science Institute, which is operated by the Association of Universities for Research
  in Astronomy, Inc., under NASA contract NAS 5-03127. This work made use of v2.2
  of the Binary Population\r\nand Spectral Synthesis (BPASS) models as described in
  E. R. Stanway & J. J. Eldridge (2018)."
article_number: '111'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Casey
  full_name: Papovich, Casey
  last_name: Papovich
- first_name: Justin W.
  full_name: Cole, Justin W.
  last_name: Cole
- first_name: Weida
  full_name: Hu, Weida
  last_name: Hu
- first_name: Steven L.
  full_name: Finkelstein, Steven L.
  last_name: Finkelstein
- first_name: Lu
  full_name: Shen, Lu
  last_name: Shen
- first_name: Pablo
  full_name: Arrabal Haro, Pablo
  last_name: Arrabal Haro
- first_name: Ricardo O.
  full_name: Amorín, Ricardo O.
  last_name: Amorín
- first_name: Bren E.
  full_name: Backhaus, Bren E.
  last_name: Backhaus
- first_name: Micaela B.
  full_name: Bagley, Micaela B.
  last_name: Bagley
- first_name: Rachana
  full_name: Bhatawdekar, Rachana
  last_name: Bhatawdekar
- first_name: Antonello
  full_name: Calabrò, Antonello
  last_name: Calabrò
- first_name: Adam C.
  full_name: Carnall, Adam C.
  last_name: Carnall
- first_name: Nikko J.
  full_name: Cleri, Nikko J.
  last_name: Cleri
- first_name: Emanuele
  full_name: Daddi, Emanuele
  last_name: Daddi
- first_name: Mark
  full_name: Dickinson, Mark
  last_name: Dickinson
- first_name: Norman A.
  full_name: Grogin, Norman A.
  last_name: Grogin
- first_name: Benne W.
  full_name: Holwerda, Benne W.
  last_name: Holwerda
- first_name: Anne E.
  full_name: Jaskot, Anne E.
  last_name: Jaskot
- first_name: Anton M.
  full_name: Koekemoer, Anton M.
  last_name: Koekemoer
- first_name: Mario
  full_name: Llerena, Mario
  last_name: Llerena
- first_name: Ray A.
  full_name: Lucas, Ray A.
  last_name: Lucas
- first_name: Sara
  full_name: Mascia, Sara
  id: edaf889c-c7cd-11ef-ab1b-bb28c431bd29
  last_name: Mascia
- first_name: Fabio
  full_name: Pacucci, Fabio
  last_name: Pacucci
- first_name: Laura
  full_name: Pentericci, Laura
  last_name: Pentericci
- first_name: Pablo G.
  full_name: Pérez-González, Pablo G.
  last_name: Pérez-González
- first_name: Nor
  full_name: Pirzkal, Nor
  last_name: Pirzkal
- first_name: Srinivasan
  full_name: Raghunathan, Srinivasan
  last_name: Raghunathan
- first_name: Lise Marie
  full_name: Seillé, Lise Marie
  last_name: Seillé
- first_name: Rachel S.
  full_name: Somerville, Rachel S.
  last_name: Somerville
- first_name: L. Y.Aaron
  full_name: Yung, L. Y.Aaron
  last_name: Yung
citation:
  ama: Papovich C, Cole JW, Hu W, et al. Galaxies in the epoch of reionization are
    all bark and no bite-plenty of ionizing photons, low escape fractions. <i>The
    Astrophysical Journal</i>. 2026;1000(1). doi:<a href="https://doi.org/10.3847/1538-4357/ae3b25">10.3847/1538-4357/ae3b25</a>
  apa: Papovich, C., Cole, J. W., Hu, W., Finkelstein, S. L., Shen, L., Arrabal Haro,
    P., … Yung, L. Y. A. (2026). Galaxies in the epoch of reionization are all bark
    and no bite-plenty of ionizing photons, low escape fractions. <i>The Astrophysical
    Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae3b25">https://doi.org/10.3847/1538-4357/ae3b25</a>
  chicago: Papovich, Casey, Justin W. Cole, Weida Hu, Steven L. Finkelstein, Lu Shen,
    Pablo Arrabal Haro, Ricardo O. Amorín, et al. “Galaxies in the Epoch of Reionization
    Are All Bark and No Bite-Plenty of Ionizing Photons, Low Escape Fractions.” <i>The
    Astrophysical Journal</i>. IOP Publishing, 2026. <a href="https://doi.org/10.3847/1538-4357/ae3b25">https://doi.org/10.3847/1538-4357/ae3b25</a>.
  ieee: C. Papovich <i>et al.</i>, “Galaxies in the epoch of reionization are all
    bark and no bite-plenty of ionizing photons, low escape fractions,” <i>The Astrophysical
    Journal</i>, vol. 1000, no. 1. IOP Publishing, 2026.
  ista: Papovich C, Cole JW, Hu W, Finkelstein SL, Shen L, Arrabal Haro P, Amorín
    RO, Backhaus BE, Bagley MB, Bhatawdekar R, Calabrò A, Carnall AC, Cleri NJ, Daddi
    E, Dickinson M, Grogin NA, Holwerda BW, Jaskot AE, Koekemoer AM, Llerena M, Lucas
    RA, Mascia S, Pacucci F, Pentericci L, Pérez-González PG, Pirzkal N, Raghunathan
    S, Seillé LM, Somerville RS, Yung LYA. 2026. Galaxies in the epoch of reionization
    are all bark and no bite-plenty of ionizing photons, low escape fractions. The
    Astrophysical Journal. 1000(1), 111.
  mla: Papovich, Casey, et al. “Galaxies in the Epoch of Reionization Are All Bark
    and No Bite-Plenty of Ionizing Photons, Low Escape Fractions.” <i>The Astrophysical
    Journal</i>, vol. 1000, no. 1, 111, IOP Publishing, 2026, doi:<a href="https://doi.org/10.3847/1538-4357/ae3b25">10.3847/1538-4357/ae3b25</a>.
  short: C. Papovich, J.W. Cole, W. Hu, S.L. Finkelstein, L. Shen, P. Arrabal Haro,
    R.O. Amorín, B.E. Backhaus, M.B. Bagley, R. Bhatawdekar, A. Calabrò, A.C. Carnall,
    N.J. Cleri, E. Daddi, M. Dickinson, N.A. Grogin, B.W. Holwerda, A.E. Jaskot, A.M.
    Koekemoer, M. Llerena, R.A. Lucas, S. Mascia, F. Pacucci, L. Pentericci, P.G.
    Pérez-González, N. Pirzkal, S. Raghunathan, L.M. Seillé, R.S. Somerville, L.Y.A.
    Yung, The Astrophysical Journal 1000 (2026).
date_created: 2026-04-12T22:01:49Z
date_published: 2026-03-20T00:00:00Z
date_updated: 2026-05-04T10:44:57Z
day: '20'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.3847/1538-4357/ae3b25
external_id:
  arxiv:
  - '2505.08870'
file:
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file_date_updated: 2026-05-04T10:40:07Z
has_accepted_license: '1'
intvolume: '      1000'
issue: '1'
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- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Galaxies in the epoch of reionization are all bark and no bite-plenty of ionizing
  photons, low escape fractions
tmp:
  image: /images/cc_by.png
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  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1000
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21715'
abstract:
- lang: eng
  text: New populations of red active galactic nuclei (known as “little red dots”)
    discovered by JWST exhibit remarkable spectral energy distributions. Leveraging
    X-ray through far-infrared observations of two of the most luminous known little
    red dots, we directly measure their bolometric luminosities. We find evidence
    that more than half of the bolometric luminosity likely emerges in the rest-frame
    optical, with Lbol/L5100 = 5, roughly half the value for “standard” active galactic
    nuclei. Meanwhile, the X-ray emitting corona, UV-emitting blackbody, and reprocessed
    mid to far-infrared emission are all considerably subdominant, assuming that the
    far-infrared luminosity is well below current measured limits. We present new
    bolometric corrections that dramatically lower inferred bolometric luminosities
    by a factor of 10 compared to published values in the literature. These bolometric
    corrections are in accord with expectations from models in which gas absorption
    and reprocessing are responsible for the red rest-frame optical colors of little
    red dots. We discuss how this lowered luminosity scale suggests a lower mass scale
    for the population by at least an order of magnitude (e.g., ∼105–107 M⊙ black
    holes, and ∼108 M⊙ galaxies), alleviating tensions with clustering, overmassive
    black holes, and the integrated black hole mass density in the Universe.
acknowledgement: "We benefit from the following JWST programs: UNCOVER (JWST/GO #2561;
  Labbé & Bezanson); ALT (JWST-GO #3516; Naidu & Matthee); MegaScience (JWST-GO #4111;
  Suess); RUBIES (JWST-GO #4233; de Graaff & Brammer); PRIMER (JWST/GO #1837; Dunlop).\r\n\r\nWe
  acknowledge funding from NSF/AAG #2306950, JWST-GO-02561, JWST-GO-03516, and JWST-GO-04111,
  provided through a grant from the STScI under NASA contract NAS5-03127. I.L. acknowledges
  support from Australian Research Council Future Fellowship FT220100798. K.G. and
  T.N. acknowledge support from Australian Research Council Laureate Fellowship FL180100060.
  A.Z. acknowledges support by grant No. 2020750 from the United States-Israel Binational
  Science Foundation (BSF) and grant No. 2109066 from the United States National Science
  Foundation (NSF); by the Ministry of Science & Technology, Israel; and by the Israel
  Science Foundation grant No. 864/23. J.M. and I.K. are funded by the European Union
  (ERC, AGENTS, 101076224). Views and opinions expressed are, however, those of the
  author(s) only and do not necessarily reflect those of the European Union or the
  European Research Council. Neither the European Union nor the granting authority
  can be held responsible for them. Y.F. acknowledges support from JSPS KAKENHI grant
  No. JSPS KAKENHI grant Nos. JP22K21349 and JP23K13149. This work has received funding
  from the Swiss State Secretariat for Education, Research and Innovation (SERI) under
  contract No. MB22.00072, as well as from the Swiss National Science Foundation (SNSF)
  through project grant 200020_207349. The Cosmic Dawn Center (DAWN) is funded by
  the Danish National Research Foundation under grant DNRF140. Support for this work
  for RPN was provided by NASA through the NASA Hubble Fellowship grant HST-HF2-51515.001-A
  awarded by the Space Telescope Science Institute, which is operated by the Association
  of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555.
  The work of CCW is supported by NOIRLab, which is managed by the Association of
  Universities for Research in Astronomy (AURA) under a cooperative agreement with
  the National Science Foundation. J.M. acknowledges funding by the European Union
  (ERC, AGENTS, 101076224). R.E.H. acknowledges support by the German Aerospace Center
  (DLR) and the Federal Ministry for Economic Affairs and Energy (BMWi) through program
  50OR2403 “RUBIES.”"
article_number: '129'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Jenny E.
  full_name: Greene, Jenny E.
  last_name: Greene
- first_name: David J.
  full_name: Setton, David J.
  last_name: Setton
- first_name: Lukas J.
  full_name: Furtak, Lukas J.
  last_name: Furtak
- first_name: Rohan P.
  full_name: Naidu, Rohan P.
  last_name: Naidu
- first_name: Marta
  full_name: Volonteri, Marta
  last_name: Volonteri
- first_name: Pratika
  full_name: Dayal, Pratika
  last_name: Dayal
- first_name: Ivo
  full_name: Labbe, Ivo
  last_name: Labbe
- first_name: Pieter
  full_name: Van Dokkum, Pieter
  last_name: Van Dokkum
- first_name: Rachel
  full_name: Bezanson, Rachel
  last_name: Bezanson
- first_name: Gabriel
  full_name: Brammer, Gabriel
  last_name: Brammer
- first_name: Sam E.
  full_name: Cutler, Sam E.
  last_name: Cutler
- first_name: Karl
  full_name: Glazebrook, Karl
  last_name: Glazebrook
- first_name: Anna
  full_name: De Graaff, Anna
  last_name: De Graaff
- first_name: Michaela
  full_name: Hirschmann, Michaela
  last_name: Hirschmann
- first_name: Raphael E.
  full_name: Hviding, Raphael E.
  last_name: Hviding
- first_name: Vasily
  full_name: Kokorev, Vasily
  last_name: Kokorev
- first_name: Joel
  full_name: Leja, Joel
  last_name: Leja
- first_name: Hanpu
  full_name: Liu, Hanpu
  last_name: Liu
- first_name: Yilun
  full_name: Ma, Yilun
  last_name: Ma
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Themiya
  full_name: Nanayakkara, Themiya
  last_name: Nanayakkara
- first_name: Pascal A.
  full_name: Oesch, Pascal A.
  last_name: Oesch
- first_name: Richard
  full_name: Pan, Richard
  last_name: Pan
- first_name: Sedona H.
  full_name: Price, Sedona H.
  last_name: Price
- first_name: Justin S.
  full_name: Spilker, Justin S.
  last_name: Spilker
- first_name: Bingjie
  full_name: Wang, Bingjie
  last_name: Wang
- first_name: John R.
  full_name: Weaver, John R.
  last_name: Weaver
- first_name: Katherine E.
  full_name: Whitaker, Katherine E.
  last_name: Whitaker
- first_name: Christina C.
  full_name: Williams, Christina C.
  last_name: Williams
- first_name: Adi
  full_name: Zitrin, Adi
  last_name: Zitrin
citation:
  ama: 'Greene JE, Setton DJ, Furtak LJ, et al. What you see is what you get: Empirically
    measured bolometric luminosities of Little Red Dots. <i>The Astrophysical Journal</i>.
    2026;996(2). doi:<a href="https://doi.org/10.3847/1538-4357/ae1836">10.3847/1538-4357/ae1836</a>'
  apa: 'Greene, J. E., Setton, D. J., Furtak, L. J., Naidu, R. P., Volonteri, M.,
    Dayal, P., … Zitrin, A. (2026). What you see is what you get: Empirically measured
    bolometric luminosities of Little Red Dots. <i>The Astrophysical Journal</i>.
    IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae1836">https://doi.org/10.3847/1538-4357/ae1836</a>'
  chicago: 'Greene, Jenny E., David J. Setton, Lukas J. Furtak, Rohan P. Naidu, Marta
    Volonteri, Pratika Dayal, Ivo Labbe, et al. “What You See Is What You Get: Empirically
    Measured Bolometric Luminosities of Little Red Dots.” <i>The Astrophysical Journal</i>.
    IOP Publishing, 2026. <a href="https://doi.org/10.3847/1538-4357/ae1836">https://doi.org/10.3847/1538-4357/ae1836</a>.'
  ieee: 'J. E. Greene <i>et al.</i>, “What you see is what you get: Empirically measured
    bolometric luminosities of Little Red Dots,” <i>The Astrophysical Journal</i>,
    vol. 996, no. 2. IOP Publishing, 2026.'
  ista: 'Greene JE, Setton DJ, Furtak LJ, Naidu RP, Volonteri M, Dayal P, Labbe I,
    Van Dokkum P, Bezanson R, Brammer G, Cutler SE, Glazebrook K, De Graaff A, Hirschmann
    M, Hviding RE, Kokorev V, Leja J, Liu H, Ma Y, Matthee JJ, Nanayakkara T, Oesch
    PA, Pan R, Price SH, Spilker JS, Wang B, Weaver JR, Whitaker KE, Williams CC,
    Zitrin A. 2026. What you see is what you get: Empirically measured bolometric
    luminosities of Little Red Dots. The Astrophysical Journal. 996(2), 129.'
  mla: 'Greene, Jenny E., et al. “What You See Is What You Get: Empirically Measured
    Bolometric Luminosities of Little Red Dots.” <i>The Astrophysical Journal</i>,
    vol. 996, no. 2, 129, IOP Publishing, 2026, doi:<a href="https://doi.org/10.3847/1538-4357/ae1836">10.3847/1538-4357/ae1836</a>.'
  short: J.E. Greene, D.J. Setton, L.J. Furtak, R.P. Naidu, M. Volonteri, P. Dayal,
    I. Labbe, P. Van Dokkum, R. Bezanson, G. Brammer, S.E. Cutler, K. Glazebrook,
    A. De Graaff, M. Hirschmann, R.E. Hviding, V. Kokorev, J. Leja, H. Liu, Y. Ma,
    J.J. Matthee, T. Nanayakkara, P.A. Oesch, R. Pan, S.H. Price, J.S. Spilker, B.
    Wang, J.R. Weaver, K.E. Whitaker, C.C. Williams, A. Zitrin, The Astrophysical
    Journal 996 (2026).
date_created: 2026-04-12T22:01:50Z
date_published: 2026-01-10T00:00:00Z
date_updated: 2026-05-04T11:20:42Z
day: '10'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.3847/1538-4357/ae1836
external_id:
  arxiv:
  - '2509.05434'
file:
- access_level: open_access
  checksum: 7b3cb025d4bcaa35c6e52bd0c8fb6cf4
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  creator: dernst
  date_created: 2026-05-04T11:19:48Z
  date_updated: 2026-05-04T11:19:48Z
  file_id: '21792'
  file_name: 2026_AstrophysicalJour_Greene.pdf
  file_size: 684400
  relation: main_file
  success: 1
file_date_updated: 2026-05-04T11:19:48Z
has_accepted_license: '1'
intvolume: '       996'
issue: '2'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: bd9b2118-d553-11ed-ba76-db24564edfea
  grant_number: '101076224'
  name: Young galaxies as tracers and agents of cosmic reionization
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'What you see is what you get: Empirically measured bolometric luminosities
  of Little Red Dots'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 996
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21716'
abstract:
- lang: eng
  text: Male germline development in plants is highly sensitive to heat stress, with
    elevated temperatures frequently impairing male fertility and consequently reducing
    seed production. Indeed, recent global warming has decreased major crop yields,
    emphasizing the urgent need to elucidate the molecular and cellular mechanisms
    underlying heat-induced male sterility. This review synthesizes current knowledge
    on how heat stress disrupts microsporogenesis and microgametogenesis, and how
    plants counteract these stresses through diverse thermotolerance mechanisms. We
    emphasize temperature-sensitive processes, including meiotic progression in male
    germ cells, programmed cell death of somatic tapetal nurse cells, and post-meiotic
    pollen tube development. We further discuss how epigenetic regulators enhance
    thermotolerance by reprogramming DNA methylation landscapes and modulating histone
    variant distribution. Finally, we propose future directions aimed at understanding
    the mechanisms of reproductive thermotolerance from the epigenetic perspective.
acknowledgement: This work was supported by JSPS KAKENHI (grant number JP22J01430)
  and the Osamu Hayaishi Memorial Scholarship for Study Abroad for H.N.
article_number: '102881'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Hiroki
  full_name: Nagai, Hiroki
  id: 608df3e6-e2ab-11ed-8890-c9318cec7da4
  last_name: Nagai
  orcid: 0000-0003-1671-9434
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  id: e0164712-22ee-11ed-b12a-d80fcdf35958
  last_name: Feng
  orcid: 0000-0002-4008-1234
citation:
  ama: NAGAI H, Feng X. Genetic and epigenetic mechanisms underlying male reproductive
    thermotolerance. <i>Current Opinion in Plant Biology</i>. 2026;91(6). doi:<a href="https://doi.org/10.1016/j.pbi.2026.102881">10.1016/j.pbi.2026.102881</a>
  apa: NAGAI, H., &#38; Feng, X. (2026). Genetic and epigenetic mechanisms underlying
    male reproductive thermotolerance. <i>Current Opinion in Plant Biology</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.pbi.2026.102881">https://doi.org/10.1016/j.pbi.2026.102881</a>
  chicago: NAGAI, HIROKI, and Xiaoqi Feng. “Genetic and Epigenetic Mechanisms Underlying
    Male Reproductive Thermotolerance.” <i>Current Opinion in Plant Biology</i>. Elsevier,
    2026. <a href="https://doi.org/10.1016/j.pbi.2026.102881">https://doi.org/10.1016/j.pbi.2026.102881</a>.
  ieee: H. NAGAI and X. Feng, “Genetic and epigenetic mechanisms underlying male reproductive
    thermotolerance,” <i>Current Opinion in Plant Biology</i>, vol. 91, no. 6. Elsevier,
    2026.
  ista: NAGAI H, Feng X. 2026. Genetic and epigenetic mechanisms underlying male reproductive
    thermotolerance. Current Opinion in Plant Biology. 91(6), 102881.
  mla: NAGAI, HIROKI, and Xiaoqi Feng. “Genetic and Epigenetic Mechanisms Underlying
    Male Reproductive Thermotolerance.” <i>Current Opinion in Plant Biology</i>, vol.
    91, no. 6, 102881, Elsevier, 2026, doi:<a href="https://doi.org/10.1016/j.pbi.2026.102881">10.1016/j.pbi.2026.102881</a>.
  short: H. NAGAI, X. Feng, Current Opinion in Plant Biology 91 (2026).
corr_author: '1'
date_created: 2026-04-12T22:01:50Z
date_published: 2026-04-01T00:00:00Z
date_updated: 2026-05-04T11:15:57Z
day: '01'
ddc:
- '580'
department:
- _id: XiFe
doi: 10.1016/j.pbi.2026.102881
has_accepted_license: '1'
intvolume: '        91'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.pbi.2026.102881
month: '04'
oa: 1
oa_version: Published Version
publication: Current Opinion in Plant Biology
publication_identifier:
  eissn:
  - 1879-0356
  issn:
  - 1369-5266
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Genetic and epigenetic mechanisms underlying male reproductive thermotolerance
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 91
year: '2026'
...
