---
_id: '18217'
abstract:
- lang: eng
  text: A central challenge in building robotic prostheses is the creation of a sensor-based
    system able to read physiological signals from the lower limb and instruct a robotic
    hand to perform various tasks. Existing systems typically perform discrete gestures
    such as pointing or grasping, by employing electromyography (EMG) or ultrasound
    (US) technologies to analyze muscle states. While estimating finger gestures has
    been done in the past by detecting prominent gestures, we are interested in detection,
    or inference, done in the context of fine motions that evolve over time. Examples
    include motions occurring when performing fine and dexterous tasks such as keyboard
    typing or piano playing. We consider this task as an important step towards higher
    adoption rates of robotic prostheses among arm amputees, as it has the potential
    to dramatically increase functionality in performing daily tasks. To this end,
    we present an end-to-end robotic system, which can successfully infer fine finger
    motions. This is achieved by modeling the hand as a robotic manipulator and using
    it as an intermediate representation to encode muscles' dynamics from a sequence
    of US images. We evaluated our method by collecting data from a group of subjects
    and demonstrating how it can be used to replay music played or text typed. To
    the best of our knowledge, this is the first study demonstrating these downstream
    tasks within an end-to-end system.
article_processing_charge: No
arxiv: 1
author:
- first_name: Dean
  full_name: Zadok, Dean
  last_name: Zadok
- first_name: Oren
  full_name: Salzman, Oren
  last_name: Salzman
- first_name: Alon
  full_name: Wolf, Alon
  last_name: Wolf
- first_name: Alexander
  full_name: Bronstein, Alexander
  id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
  last_name: Bronstein
  orcid: 0000-0001-9699-8730
citation:
  ama: 'Zadok D, Salzman O, Wolf A, Bronstein AM. Towards predicting fine finger motions
    from ultrasound images via kinematic representation. In: <i>2023 IEEE International
    Conference on Robotics and Automation</i>. Vol 27. IEEE; 2023. doi:<a href="https://doi.org/10.1109/icra48891.2023.10160601">10.1109/icra48891.2023.10160601</a>'
  apa: 'Zadok, D., Salzman, O., Wolf, A., &#38; Bronstein, A. M. (2023). Towards predicting
    fine finger motions from ultrasound images via kinematic representation. In <i>2023
    IEEE International Conference on Robotics and Automation</i> (Vol. 27). London,
    United Kingdom: IEEE. <a href="https://doi.org/10.1109/icra48891.2023.10160601">https://doi.org/10.1109/icra48891.2023.10160601</a>'
  chicago: Zadok, Dean, Oren Salzman, Alon Wolf, and Alex M. Bronstein. “Towards Predicting
    Fine Finger Motions from Ultrasound Images via Kinematic Representation.” In <i>2023
    IEEE International Conference on Robotics and Automation</i>, Vol. 27. IEEE, 2023.
    <a href="https://doi.org/10.1109/icra48891.2023.10160601">https://doi.org/10.1109/icra48891.2023.10160601</a>.
  ieee: D. Zadok, O. Salzman, A. Wolf, and A. M. Bronstein, “Towards predicting fine
    finger motions from ultrasound images via kinematic representation,” in <i>2023
    IEEE International Conference on Robotics and Automation</i>, London, United Kingdom,
    2023, vol. 27.
  ista: 'Zadok D, Salzman O, Wolf A, Bronstein AM. 2023. Towards predicting fine finger
    motions from ultrasound images via kinematic representation. 2023 IEEE International
    Conference on Robotics and Automation. ICRA: Conference on Robotics and Automation
    vol. 27.'
  mla: Zadok, Dean, et al. “Towards Predicting Fine Finger Motions from Ultrasound
    Images via Kinematic Representation.” <i>2023 IEEE International Conference on
    Robotics and Automation</i>, vol. 27, IEEE, 2023, doi:<a href="https://doi.org/10.1109/icra48891.2023.10160601">10.1109/icra48891.2023.10160601</a>.
  short: D. Zadok, O. Salzman, A. Wolf, A.M. Bronstein, in:, 2023 IEEE International
    Conference on Robotics and Automation, IEEE, 2023.
conference:
  end_date: 2023-06-02
  location: London, United Kingdom
  name: 'ICRA: Conference on Robotics and Automation'
  start_date: 2023-05-29
date_created: 2024-10-08T12:50:55Z
date_published: 2023-07-04T00:00:00Z
date_updated: 2024-10-09T12:00:32Z
day: '04'
doi: 10.1109/icra48891.2023.10160601
extern: '1'
external_id:
  arxiv:
  - '2202.05204'
intvolume: '        27'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2202.05204
month: '07'
oa: 1
oa_version: Preprint
publication: 2023 IEEE International Conference on Robotics and Automation
publication_identifier:
  eisbn:
  - '9798350323658'
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Towards predicting fine finger motions from ultrasound images via kinematic
  representation
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 27
year: '2023'
...
---
_id: '18218'
abstract:
- lang: eng
  text: Deep neural networks are known to be susceptible to adversarial perturbations
    – small perturbations that alter the output of the network and exist under strict
    norm limitations. While such perturbations are usually discussed as tailored to
    a specific input, a universal perturbation can be constructed to alter the model’s
    output on a set of inputs. Universal perturbations present a more realistic case
    of adversarial attacks, as awareness of the model’s exact input is not required.
    In addition, the universal attack setting raises the subject of generalization
    to unseen data, where given a set of inputs, the universal perturbations aim to
    alter the model’s output on out-of-sample data. In this work, we study physical
    passive patch adversarial attacks on visual odometry-based autonomous navigation
    systems. A visual odometry system aims to infer the relative camera motion between
    two corresponding viewpoints, and is frequently used by vision-based autonomous
    navigation systems to estimate their state. For such navigation systems, a patch
    adversarial perturbation poses a severe security issue, as it can be used to mislead
    a system onto some collision course. To the best of our knowledge, we show for
    the first time that the error margin of a visual odometry model can be significantly
    increased by deploying patch adversarial attacks in the scene. We provide evaluation
    on synthetic closed-loop drone navigation data and demonstrate that a comparable
    vulnerability exists in real data. A reference implementation of the proposed
    method and the reported experiments is provided at https://github.com/patchadversarialattacks/patchadversarialattacks.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Yaniv
  full_name: Nemcovsky, Yaniv
  last_name: Nemcovsky
- first_name: Matan
  full_name: Jacoby, Matan
  last_name: Jacoby
- first_name: Alexander
  full_name: Bronstein, Alexander
  id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
  last_name: Bronstein
  orcid: 0000-0001-9699-8730
- first_name: Chaim
  full_name: Baskin, Chaim
  last_name: Baskin
citation:
  ama: 'Nemcovsky Y, Jacoby M, Bronstein AM, Baskin C. Physical passive patch adversarial
    attacks on visual odometry systems. In: <i>16th Asian Conference on Computer Vision</i>.
    Vol 13847. Springer Nature; 2023:518-534. doi:<a href="https://doi.org/10.1007/978-3-031-26293-7_31">10.1007/978-3-031-26293-7_31</a>'
  apa: 'Nemcovsky, Y., Jacoby, M., Bronstein, A. M., &#38; Baskin, C. (2023). Physical
    passive patch adversarial attacks on visual odometry systems. In <i>16th Asian
    Conference on Computer Vision</i> (Vol. 13847, pp. 518–534). Macao, China: Springer
    Nature. <a href="https://doi.org/10.1007/978-3-031-26293-7_31">https://doi.org/10.1007/978-3-031-26293-7_31</a>'
  chicago: Nemcovsky, Yaniv, Matan Jacoby, Alex M. Bronstein, and Chaim Baskin. “Physical
    Passive Patch Adversarial Attacks on Visual Odometry Systems.” In <i>16th Asian
    Conference on Computer Vision</i>, 13847:518–34. Springer Nature, 2023. <a href="https://doi.org/10.1007/978-3-031-26293-7_31">https://doi.org/10.1007/978-3-031-26293-7_31</a>.
  ieee: Y. Nemcovsky, M. Jacoby, A. M. Bronstein, and C. Baskin, “Physical passive
    patch adversarial attacks on visual odometry systems,” in <i>16th Asian Conference
    on Computer Vision</i>, Macao, China, 2023, vol. 13847, pp. 518–534.
  ista: 'Nemcovsky Y, Jacoby M, Bronstein AM, Baskin C. 2023. Physical passive patch
    adversarial attacks on visual odometry systems. 16th Asian Conference on Computer
    Vision. ACCV: Asian Conference on Computer Vision, LNCS, vol. 13847, 518–534.'
  mla: Nemcovsky, Yaniv, et al. “Physical Passive Patch Adversarial Attacks on Visual
    Odometry Systems.” <i>16th Asian Conference on Computer Vision</i>, vol. 13847,
    Springer Nature, 2023, pp. 518–34, doi:<a href="https://doi.org/10.1007/978-3-031-26293-7_31">10.1007/978-3-031-26293-7_31</a>.
  short: Y. Nemcovsky, M. Jacoby, A.M. Bronstein, C. Baskin, in:, 16th Asian Conference
    on Computer Vision, Springer Nature, 2023, pp. 518–534.
conference:
  end_date: 2022-12-08
  location: Macao, China
  name: 'ACCV: Asian Conference on Computer Vision'
  start_date: 2022-12-04
date_created: 2024-10-08T12:51:14Z
date_published: 2023-03-11T00:00:00Z
date_updated: 2024-10-09T12:13:36Z
day: '11'
doi: 10.1007/978-3-031-26293-7_31
extern: '1'
external_id:
  arxiv:
  - '2207.05729'
intvolume: '     13847'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2207.05729
month: '03'
oa: 1
oa_version: Preprint
page: 518-534
publication: 16th Asian Conference on Computer Vision
publication_identifier:
  eisbn:
  - '9783031262937'
  eissn:
  - 1611-3349
  isbn:
  - '9783031262920'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/patchadversarialattacks/patchadversarialattacks
scopus_import: '1'
status: public
title: Physical passive patch adversarial attacks on visual odometry systems
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13847
year: '2023'
...
---
_id: '18219'
abstract:
- lang: eng
  text: Nowadays, many of the images captured are ‘observed’ by machines only and
    not by humans, e.g., in autonomous systems. High-level machine vision models,
    such as object recognition or semantic segmentation, assume images are transformed
    into some canonical image space by the camera Image Signal Processor (ISP). However,
    the camera ISP is optimized for producing visually pleasing images for human observers
    and not for machines. Therefore, one may spare the ISP compute time and apply
    vision models directly to RAW images. Yet, it has been shown that training such
    models directly on RAW images results in a performance drop. To mitigate this
    drop, we use a RAW and RGB image pairs dataset, which can be easily acquired with
    no human labeling. We then train a model that is applied directly to the RAW data
    by using knowledge distillation such that the model predictions for RAW images
    will be aligned with the predictions of an off-the-shelf pre-trained model for
    processed RGB images. Our experiments show that our performance on RAW images
    for object classification and semantic segmentation is significantly better than
    models trained on labeled RAW images. It also reasonably matches the predictions
    of a pre-trained model on processed RGB images, while saving the ISP compute overhead.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Eli
  full_name: Schwartz, Eli
  last_name: Schwartz
- first_name: Alexander
  full_name: Bronstein, Alexander
  id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
  last_name: Bronstein
  orcid: 0000-0001-9699-8730
- first_name: Raja
  full_name: Giryes, Raja
  last_name: Giryes
citation:
  ama: Schwartz E, Bronstein AM, Giryes R. ISP Distillation. <i>IEEE Open Journal
    of Signal Processing</i>. 2023;4:12-20. doi:<a href="https://doi.org/10.1109/ojsp.2023.3239819">10.1109/ojsp.2023.3239819</a>
  apa: Schwartz, E., Bronstein, A. M., &#38; Giryes, R. (2023). ISP Distillation.
    <i>IEEE Open Journal of Signal Processing</i>. Institute of Electrical and Electronics
    Engineers. <a href="https://doi.org/10.1109/ojsp.2023.3239819">https://doi.org/10.1109/ojsp.2023.3239819</a>
  chicago: Schwartz, Eli, Alex M. Bronstein, and Raja Giryes. “ISP Distillation.”
    <i>IEEE Open Journal of Signal Processing</i>. Institute of Electrical and Electronics
    Engineers, 2023. <a href="https://doi.org/10.1109/ojsp.2023.3239819">https://doi.org/10.1109/ojsp.2023.3239819</a>.
  ieee: E. Schwartz, A. M. Bronstein, and R. Giryes, “ISP Distillation,” <i>IEEE Open
    Journal of Signal Processing</i>, vol. 4. Institute of Electrical and Electronics
    Engineers, pp. 12–20, 2023.
  ista: Schwartz E, Bronstein AM, Giryes R. 2023. ISP Distillation. IEEE Open Journal
    of Signal Processing. 4, 12–20.
  mla: Schwartz, Eli, et al. “ISP Distillation.” <i>IEEE Open Journal of Signal Processing</i>,
    vol. 4, Institute of Electrical and Electronics Engineers, 2023, pp. 12–20, doi:<a
    href="https://doi.org/10.1109/ojsp.2023.3239819">10.1109/ojsp.2023.3239819</a>.
  short: E. Schwartz, A.M. Bronstein, R. Giryes, IEEE Open Journal of Signal Processing
    4 (2023) 12–20.
date_created: 2024-10-08T12:51:32Z
date_published: 2023-01-25T00:00:00Z
date_updated: 2024-10-09T12:24:13Z
day: '25'
doi: 10.1109/ojsp.2023.3239819
extern: '1'
external_id:
  arxiv:
  - '2101.10203'
intvolume: '         4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1109/OJSP.2023.3239819
month: '01'
oa: 1
oa_version: Published Version
page: 12-20
publication: IEEE Open Journal of Signal Processing
publication_identifier:
  issn:
  - 2644-1322
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
scopus_import: '1'
status: public
title: ISP Distillation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 4
year: '2023'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18621'
abstract:
- lang: eng
  text: During neural development, cellular adhesion is crucial for interactions among
    and between neurons and surrounding tissues. This function is mediated by conserved
    cell adhesion molecules, which are tightly regulated to allow for coordinated
    neuronal outgrowth. Here, we show that the proprotein convertase KPC-1 (homolog
    of mammalian furin) regulates the Menorin adhesion complex during development
    of PVD dendritic arbors in Caenorhabditis elegans. We found a finely regulated
    antagonistic balance between PVD-expressed KPC-1 and the epidermally expressed
    putative cell adhesion molecule MNR-1 (Menorin). Genetically, partial loss of
    mnr-1 suppressed partial loss of kpc-1, and both loss of kpc-1 and transgenic
    overexpression of mnr-1 resulted in indistinguishable phenotypes in PVD dendrites.
    This balance regulated cell-surface localization of the DMA-1 leucine-rich transmembrane
    receptor in PVD neurons. Lastly, kpc-1 mutants showed increased amounts of MNR-1
    and decreased amounts of muscle-derived LECT-2 (Chondromodulin II), which is also
    part of the Menorin adhesion complex. These observations suggest that KPC-1 in
    PVD neurons directly or indirectly controls the abundance of proteins of the Menorin
    adhesion complex from adjacent tissues, thereby providing negative feedback from
    the dendrite to the instructive cues of surrounding tissues.
acknowledgement: "We thank members of the Bülow laboratory for comments on the manuscript
  and discussions throughout the course of this work; and Ryan Peer and William Corman
  for their initial help with the modifier genetic screen. We acknowledge the Genomics
  Core facility and the Advanced Imaging Facility at Albert Einstein College of Medicine
  for help during these studies. We are grateful to Kang Shen, David Miller and the
  Caenorhabditis Genetics Center (which is funded by National Institutes of Health
  Office of Research Infrastructure Programs P40OD0104400) for some of the strains
  used in this study, and Lhisia Chen for the anti-SAX-7 antibody.\r\nThis work was
  supported by grants from the National Institutes of Health (F31NS100370 to M.R.;
  T32GM007288 and F31NS111939 to M.T.; R01NS096672, R21NS081505 and R01NS129992 to
  H.E.B.; and P30HD071593 to Albert Einstein College of Medicine). N.J.R.-S. was the
  recipient of a Colciencias-Fulbright Fellowship [funded by Departamento Administrativo
  de Ciencia, Tecnología e Innovación (COLCIENCIAS) and Fulbright Colombia], L.T.H.T.
  of a Croucher Foundation Fellowship, and H.E.B. of an Irma T. Hirschl Trust/Monique
  Weill-Caulier Trust research fellowship. Open Access funding provided by Albert
  Einstein College of Medicine, Yeshiva University. Deposited in PMC for immediate
  release."
article_processing_charge: No
article_type: original
author:
- first_name: Nelson
  full_name: Ramirez, Nelson
  id: 39831956-E4FE-11E9-85DE-0DC7E5697425
  last_name: Ramirez
- first_name: Helen M.
  full_name: Belalcazar, Helen M.
  last_name: Belalcazar
- first_name: Maisha
  full_name: Rahman, Maisha
  last_name: Rahman
- first_name: Meera
  full_name: Trivedi, Meera
  last_name: Trivedi
- first_name: Leo T. H.
  full_name: Tang, Leo T. H.
  last_name: Tang
- first_name: Hannes E.
  full_name: Bülow, Hannes E.
  last_name: Bülow
citation:
  ama: Ramirez N, Belalcazar HM, Rahman M, Trivedi M, Tang LTH, Bülow HE. Convertase-dependent
    regulation of membrane-tethered and secreted ligands tunes dendrite adhesion.
    <i>Development</i>. 2023;150(18). doi:<a href="https://doi.org/10.1242/dev.201208">10.1242/dev.201208</a>
  apa: Ramirez, N., Belalcazar, H. M., Rahman, M., Trivedi, M., Tang, L. T. H., &#38;
    Bülow, H. E. (2023). Convertase-dependent regulation of membrane-tethered and
    secreted ligands tunes dendrite adhesion. <i>Development</i>. The Company of Biologists.
    <a href="https://doi.org/10.1242/dev.201208">https://doi.org/10.1242/dev.201208</a>
  chicago: Ramirez, Nelson, Helen M. Belalcazar, Maisha Rahman, Meera Trivedi, Leo
    T. H. Tang, and Hannes E. Bülow. “Convertase-Dependent Regulation of Membrane-Tethered
    and Secreted Ligands Tunes Dendrite Adhesion.” <i>Development</i>. The Company
    of Biologists, 2023. <a href="https://doi.org/10.1242/dev.201208">https://doi.org/10.1242/dev.201208</a>.
  ieee: N. Ramirez, H. M. Belalcazar, M. Rahman, M. Trivedi, L. T. H. Tang, and H.
    E. Bülow, “Convertase-dependent regulation of membrane-tethered and secreted ligands
    tunes dendrite adhesion,” <i>Development</i>, vol. 150, no. 18. The Company of
    Biologists, 2023.
  ista: Ramirez N, Belalcazar HM, Rahman M, Trivedi M, Tang LTH, Bülow HE. 2023. Convertase-dependent
    regulation of membrane-tethered and secreted ligands tunes dendrite adhesion.
    Development. 150(18).
  mla: Ramirez, Nelson, et al. “Convertase-Dependent Regulation of Membrane-Tethered
    and Secreted Ligands Tunes Dendrite Adhesion.” <i>Development</i>, vol. 150, no.
    18, The Company of Biologists, 2023, doi:<a href="https://doi.org/10.1242/dev.201208">10.1242/dev.201208</a>.
  short: N. Ramirez, H.M. Belalcazar, M. Rahman, M. Trivedi, L.T.H. Tang, H.E. Bülow,
    Development 150 (2023).
date_created: 2024-12-04T22:02:52Z
date_published: 2023-09-18T00:00:00Z
date_updated: 2024-12-09T11:43:40Z
day: '18'
ddc:
- '570'
doi: 10.1242/dev.201208
extern: '1'
external_id:
  pmid:
  - '37721334'
file:
- access_level: open_access
  checksum: d2158dc56db50457e6404c4afec4401c
  content_type: application/pdf
  creator: nramirez
  date_created: 2024-12-04T22:12:04Z
  date_updated: 2024-12-04T22:12:04Z
  file_id: '18624'
  file_name: dev201208.pdf
  file_size: 9559527
  relation: main_file
  success: 1
file_date_updated: 2024-12-04T22:12:04Z
has_accepted_license: '1'
intvolume: '       150'
issue: '18'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
publication: Development
publication_identifier:
  eissn:
  - 1477-9129
  issn:
  - 0950-1991
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Convertase-dependent regulation of membrane-tethered and secreted ligands tunes
  dendrite adhesion
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 150
year: '2023'
...
---
OA_place: repository
_id: '18634'
abstract:
- lang: eng
  text: 'There are 4 tar.xz files with the result of the model for the paper: A 3D
    glacier dynamics-line plume model to estimate the frontal ablation of Hansbreen,
    Svalbard. '
article_processing_charge: No
author:
- first_name: José M
  full_name: Muñoz Hermosilla, José M
  id: e1037a6d-646e-11ef-b402-e0ed9ab0901e
  last_name: Muñoz Hermosilla
citation:
  ama: Muñoz Hermosilla JM. A 3D glacier dynamics-line plume model to estimate the
    frontal ablation of Hansbreen. 2023. doi:<a href="https://doi.org/10.5281/ZENODO.8005257">10.5281/ZENODO.8005257</a>
  apa: Muñoz Hermosilla, J. M. (2023). A 3D glacier dynamics-line plume model to estimate
    the frontal ablation of Hansbreen. Zenodo. <a href="https://doi.org/10.5281/ZENODO.8005257">https://doi.org/10.5281/ZENODO.8005257</a>
  chicago: Muñoz Hermosilla, José M. “A 3D Glacier Dynamics-Line Plume Model to Estimate
    the Frontal Ablation of Hansbreen.” Zenodo, 2023. <a href="https://doi.org/10.5281/ZENODO.8005257">https://doi.org/10.5281/ZENODO.8005257</a>.
  ieee: J. M. Muñoz Hermosilla, “A 3D glacier dynamics-line plume model to estimate
    the frontal ablation of Hansbreen.” Zenodo, 2023.
  ista: Muñoz Hermosilla JM. 2023. A 3D glacier dynamics-line plume model to estimate
    the frontal ablation of Hansbreen, Zenodo, <a href="https://doi.org/10.5281/ZENODO.8005257">10.5281/ZENODO.8005257</a>.
  mla: Muñoz Hermosilla, José M. <i>A 3D Glacier Dynamics-Line Plume Model to Estimate
    the Frontal Ablation of Hansbreen</i>. Zenodo, 2023, doi:<a href="https://doi.org/10.5281/ZENODO.8005257">10.5281/ZENODO.8005257</a>.
  short: J.M. Muñoz Hermosilla, (2023).
corr_author: '1'
date_created: 2024-12-09T09:33:07Z
date_published: 2023-06-05T00:00:00Z
date_updated: 2024-12-09T09:43:47Z
day: '05'
ddc:
- '550'
department:
- _id: FrPe
doi: 10.5281/ZENODO.8005257
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.8005258
month: '06'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '18628'
    relation: research_data
    status: public
status: public
title: A 3D glacier dynamics-line plume model to estimate the frontal ablation of
  Hansbreen
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12287'
abstract:
- lang: eng
  text: We present criteria for establishing a triangulation of a manifold. Given
    a manifold M, a simplicial complex A, and a map H from the underlying space of
    A to M, our criteria are presented in local coordinate charts for M, and ensure
    that H is a homeomorphism. These criteria do not require a differentiable structure,
    or even an explicit metric on M. No Delaunay property of A is assumed. The result
    provides a triangulation guarantee for algorithms that construct a simplicial
    complex by working in local coordinate patches. Because the criteria are easily
    verified in such a setting, they are expected to be of general use.
acknowledgement: "This work has been funded by the European Research Council under
  the European Union’s ERC Grant Agreement number 339025 GUDHI (Algorithmic Foundations
  of Geometric Understanding in Higher Dimensions). Arijit Ghosh is supported by Ramanujan
  Fellowship (No. SB/S2/RJN-064/2015). Part of this work was done when Arijit Ghosh
  was a Researcher at Max-Planck-Institute for Informatics, Germany, supported by
  the IndoGerman Max Planck Center for Computer Science (IMPECS). Mathijs Wintraecken
  also received funding from the European Union’s Horizon 2020 research and innovation
  programme under the Marie Skłodowska-Curie grant agreement No. 754411 and the Austrian
  Science Fund (FWF): M-3073. A part of the results described in this paper were presented
  at SoCG 2018 and in [3]. \r\nOpen access funding provided by the Austrian Science
  Fund (FWF)."
article_processing_charge: No
article_type: original
author:
- first_name: Jean-Daniel
  full_name: Boissonnat, Jean-Daniel
  last_name: Boissonnat
- first_name: Ramsay
  full_name: Dyer, Ramsay
  last_name: Dyer
- first_name: Arijit
  full_name: Ghosh, Arijit
  last_name: Ghosh
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Boissonnat J-D, Dyer R, Ghosh A, Wintraecken M. Local criteria for triangulating
    general manifolds. <i>Discrete &#38; Computational Geometry</i>. 2023;69:156-191.
    doi:<a href="https://doi.org/10.1007/s00454-022-00431-7">10.1007/s00454-022-00431-7</a>
  apa: Boissonnat, J.-D., Dyer, R., Ghosh, A., &#38; Wintraecken, M. (2023). Local
    criteria for triangulating general manifolds. <i>Discrete &#38; Computational
    Geometry</i>. Springer Nature. <a href="https://doi.org/10.1007/s00454-022-00431-7">https://doi.org/10.1007/s00454-022-00431-7</a>
  chicago: Boissonnat, Jean-Daniel, Ramsay Dyer, Arijit Ghosh, and Mathijs Wintraecken.
    “Local Criteria for Triangulating General Manifolds.” <i>Discrete &#38; Computational
    Geometry</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00454-022-00431-7">https://doi.org/10.1007/s00454-022-00431-7</a>.
  ieee: J.-D. Boissonnat, R. Dyer, A. Ghosh, and M. Wintraecken, “Local criteria for
    triangulating general manifolds,” <i>Discrete &#38; Computational Geometry</i>,
    vol. 69. Springer Nature, pp. 156–191, 2023.
  ista: Boissonnat J-D, Dyer R, Ghosh A, Wintraecken M. 2023. Local criteria for triangulating
    general manifolds. Discrete &#38; Computational Geometry. 69, 156–191.
  mla: Boissonnat, Jean-Daniel, et al. “Local Criteria for Triangulating General Manifolds.”
    <i>Discrete &#38; Computational Geometry</i>, vol. 69, Springer Nature, 2023,
    pp. 156–91, doi:<a href="https://doi.org/10.1007/s00454-022-00431-7">10.1007/s00454-022-00431-7</a>.
  short: J.-D. Boissonnat, R. Dyer, A. Ghosh, M. Wintraecken, Discrete &#38; Computational
    Geometry 69 (2023) 156–191.
corr_author: '1'
date_created: 2023-01-16T10:04:06Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2025-04-14T07:44:00Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00454-022-00431-7
ec_funded: 1
external_id:
  isi:
  - '000862193600001'
file:
- access_level: open_access
  checksum: 46352e0ee71e460848f88685ca852681
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-02T11:01:10Z
  date_updated: 2023-02-02T11:01:10Z
  file_id: '12488'
  file_name: 2023_DiscreteCompGeometry_Boissonnat.pdf
  file_size: 582850
  relation: main_file
  success: 1
file_date_updated: 2023-02-02T11:01:10Z
has_accepted_license: '1'
intvolume: '        69'
isi: 1
keyword:
- Computational Theory and Mathematics
- Discrete Mathematics and Combinatorics
- Geometry and Topology
- Theoretical Computer Science
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 156-191
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
publication: Discrete & Computational Geometry
publication_identifier:
  eissn:
  - 1432-0444
  issn:
  - 0179-5376
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Local criteria for triangulating general manifolds
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 69
year: '2023'
...
---
_id: '12313'
abstract:
- lang: eng
  text: Let P be a nontorsion point on an elliptic curve defined over a number field
    K and consider the sequence {Bn}n∈N of the denominators of x(nP). We prove that
    every term of the sequence of the Bn has a primitive divisor for n greater than
    an effectively computable constant that we will explicitly compute. This constant
    will depend only on the model defining the curve.
acknowledgement: "This paper is part of the author’s PhD thesis at Università of Pisa.
  Moreover, this\r\nproject has received funding from the European Union’s Horizon
  2020 research\r\nand innovation programme under the Marie Skłodowska-Curie Grant
  Agreement\r\nNo. 101034413. I thank the referee for many helpful comments."
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Matteo
  full_name: Verzobio, Matteo
  id: 7aa8f170-131e-11ed-88e1-a9efd01027cb
  last_name: Verzobio
  orcid: 0000-0002-0854-0306
citation:
  ama: Verzobio M. Some effectivity results for primitive divisors of elliptic divisibility 
    sequences. <i>Pacific Journal of Mathematics</i>. 2023;325(2):331-351. doi:<a
    href="https://doi.org/10.2140/pjm.2023.325.331">10.2140/pjm.2023.325.331</a>
  apa: Verzobio, M. (2023). Some effectivity results for primitive divisors of elliptic
    divisibility  sequences. <i>Pacific Journal of Mathematics</i>. Mathematical Sciences
    Publishers. <a href="https://doi.org/10.2140/pjm.2023.325.331">https://doi.org/10.2140/pjm.2023.325.331</a>
  chicago: Verzobio, Matteo. “Some Effectivity Results for Primitive Divisors of Elliptic
    Divisibility  Sequences.” <i>Pacific Journal of Mathematics</i>. Mathematical
    Sciences Publishers, 2023. <a href="https://doi.org/10.2140/pjm.2023.325.331">https://doi.org/10.2140/pjm.2023.325.331</a>.
  ieee: M. Verzobio, “Some effectivity results for primitive divisors of elliptic
    divisibility  sequences,” <i>Pacific Journal of Mathematics</i>, vol. 325, no.
    2. Mathematical Sciences Publishers, pp. 331–351, 2023.
  ista: Verzobio M. 2023. Some effectivity results for primitive divisors of elliptic
    divisibility  sequences. Pacific Journal of Mathematics. 325(2), 331–351.
  mla: Verzobio, Matteo. “Some Effectivity Results for Primitive Divisors of Elliptic
    Divisibility  Sequences.” <i>Pacific Journal of Mathematics</i>, vol. 325, no.
    2, Mathematical Sciences Publishers, 2023, pp. 331–51, doi:<a href="https://doi.org/10.2140/pjm.2023.325.331">10.2140/pjm.2023.325.331</a>.
  short: M. Verzobio, Pacific Journal of Mathematics 325 (2023) 331–351.
corr_author: '1'
date_created: 2023-01-16T11:46:19Z
date_published: 2023-11-03T00:00:00Z
date_updated: 2025-04-14T07:54:54Z
day: '03'
ddc:
- '510'
department:
- _id: TiBr
doi: 10.2140/pjm.2023.325.331
ec_funded: 1
external_id:
  arxiv:
  - '2001.02987'
  isi:
  - '001104766900001'
file:
- access_level: open_access
  checksum: b6218d16a72742d8bb38d6fc3c9bb8c6
  content_type: application/pdf
  creator: dernst
  date_created: 2023-11-13T09:50:41Z
  date_updated: 2023-11-13T09:50:41Z
  file_id: '14525'
  file_name: 2023_PacificJourMaths_Verzobio.pdf
  file_size: 389897
  relation: main_file
  success: 1
file_date_updated: 2023-11-13T09:50:41Z
has_accepted_license: '1'
intvolume: '       325'
isi: 1
issue: '2'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 331-351
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Pacific Journal of Mathematics
publication_identifier:
  eissn:
  - 0030-8730
publication_status: published
publisher: Mathematical Sciences Publishers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Some effectivity results for primitive divisors of elliptic divisibility  sequences
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 325
year: '2023'
...
---
_id: '12329'
abstract:
- lang: eng
  text: In this article, we develop two independent and new approaches to model epidemic
    spread in a network. Contrary to the most studied models, those developed here
    allow for contacts with different probabilities of transmitting the disease (transmissibilities).
    We then examine each of these models using some mean field type approximations.
    The first model looks at the late-stage effects of an epidemic outbreak and allows
    for the computation of the probability that a given vertex was infected. This
    computation is based on a mean field approximation and only depends on the number
    of contacts and their transmissibilities. This approach shares many similarities
    with percolation models in networks. The second model we develop is a dynamic
    model which we analyze using a mean field approximation which highly reduces the
    dimensionality of the system. In particular, the original system which individually
    analyses each vertex of the network is reduced to one with as many equations as
    different transmissibilities. Perhaps the greatest contribution of this article
    is the observation that, in both these models, the existence and size of an epidemic
    outbreak are linked to the properties of a matrix which we call the R-matrix.
    This is a generalization of the basic reproduction number which more precisely
    characterizes the main routes of infection.
acknowledgement: Gonçalo Oliveira is supported by the NOMIS Foundation, Fundação Serrapilheira
  1812-27395, by CNPq grants 428959/2018-0 and 307475/2018-2, and by FAPERJ through
  the grant Jovem Cientista do Nosso Estado E-26/202.793/2019.
article_number: '468'
article_processing_charge: No
article_type: original
author:
- first_name: Arturo
  full_name: Gómez, Arturo
  last_name: Gómez
- first_name: Goncalo
  full_name: Oliveira, Goncalo
  id: 58abbde8-f455-11eb-a497-98c8fd71b905
  last_name: Oliveira
citation:
  ama: Gómez A, Oliveira G. New approaches to epidemic modeling on networks. <i>Scientific
    Reports</i>. 2023;13. doi:<a href="https://doi.org/10.1038/s41598-022-19827-9">10.1038/s41598-022-19827-9</a>
  apa: Gómez, A., &#38; Oliveira, G. (2023). New approaches to epidemic modeling on
    networks. <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-022-19827-9">https://doi.org/10.1038/s41598-022-19827-9</a>
  chicago: Gómez, Arturo, and Goncalo Oliveira. “New Approaches to Epidemic Modeling
    on Networks.” <i>Scientific Reports</i>. Springer Nature, 2023. <a href="https://doi.org/10.1038/s41598-022-19827-9">https://doi.org/10.1038/s41598-022-19827-9</a>.
  ieee: A. Gómez and G. Oliveira, “New approaches to epidemic modeling on networks,”
    <i>Scientific Reports</i>, vol. 13. Springer Nature, 2023.
  ista: Gómez A, Oliveira G. 2023. New approaches to epidemic modeling on networks.
    Scientific Reports. 13, 468.
  mla: Gómez, Arturo, and Goncalo Oliveira. “New Approaches to Epidemic Modeling on
    Networks.” <i>Scientific Reports</i>, vol. 13, 468, Springer Nature, 2023, doi:<a
    href="https://doi.org/10.1038/s41598-022-19827-9">10.1038/s41598-022-19827-9</a>.
  short: A. Gómez, G. Oliveira, Scientific Reports 13 (2023).
corr_author: '1'
date_created: 2023-01-22T23:00:55Z
date_published: 2023-01-10T00:00:00Z
date_updated: 2024-10-09T21:03:29Z
day: '10'
ddc:
- '510'
department:
- _id: TaHa
doi: 10.1038/s41598-022-19827-9
external_id:
  isi:
  - '001003345000051'
file:
- access_level: open_access
  checksum: a8b83739f4a951e83e0b2a778f03b327
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-23T07:53:23Z
  date_updated: 2023-01-23T07:53:23Z
  file_id: '12336'
  file_name: 2023_ScientificReports_Gomez.pdf
  file_size: 2167792
  relation: main_file
  success: 1
file_date_updated: 2023-01-23T07:53:23Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_identifier:
  eissn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: New approaches to epidemic modeling on networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2023'
...
---
_id: '12330'
abstract:
- lang: eng
  text: 'The design and implementation of efficient concurrent data structures has
    seen significant attention. However, most of this work has focused on concurrent
    data structures providing good worst-case guarantees, although, in real workloads,
    objects are often accessed at different rates. Efficient distribution-adaptive
    data structures, such as splay-trees, are known in the sequential case; however,
    they often are hard to translate efficiently to the concurrent case. We investigate
    distribution-adaptive concurrent data structures, and propose a new design called
    the splay-list. At a high level, the splay-list is similar to a standard skip-list,
    with the key distinction that the height of each element adapts dynamically to
    its access rate: popular elements “move up,” whereas rarely-accessed elements
    decrease in height. We show that the splay-list provides order-optimal amortized
    complexity bounds for a subset of operations, while being amenable to efficient
    concurrent implementation. Experiments show that the splay-list can leverage distribution-adaptivity
    for performance, and can outperform the only previously-known distribution-adaptive
    concurrent design in certain workloads.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Vitalii
  full_name: Aksenov, Vitalii
  id: 2980135A-F248-11E8-B48F-1D18A9856A87
  last_name: Aksenov
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Alexandra
  full_name: Drozdova, Alexandra
  last_name: Drozdova
- first_name: Amirkeivan
  full_name: Mohtashami, Amirkeivan
  last_name: Mohtashami
citation:
  ama: 'Aksenov V, Alistarh D-A, Drozdova A, Mohtashami A. The splay-list: A distribution-adaptive
    concurrent skip-list. <i>Distributed Computing</i>. 2023;36:395-418. doi:<a href="https://doi.org/10.1007/s00446-022-00441-x">10.1007/s00446-022-00441-x</a>'
  apa: 'Aksenov, V., Alistarh, D.-A., Drozdova, A., &#38; Mohtashami, A. (2023). The
    splay-list: A distribution-adaptive concurrent skip-list. <i>Distributed Computing</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s00446-022-00441-x">https://doi.org/10.1007/s00446-022-00441-x</a>'
  chicago: 'Aksenov, Vitalii, Dan-Adrian Alistarh, Alexandra Drozdova, and Amirkeivan
    Mohtashami. “The Splay-List: A Distribution-Adaptive Concurrent Skip-List.” <i>Distributed
    Computing</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00446-022-00441-x">https://doi.org/10.1007/s00446-022-00441-x</a>.'
  ieee: 'V. Aksenov, D.-A. Alistarh, A. Drozdova, and A. Mohtashami, “The splay-list:
    A distribution-adaptive concurrent skip-list,” <i>Distributed Computing</i>, vol.
    36. Springer Nature, pp. 395–418, 2023.'
  ista: 'Aksenov V, Alistarh D-A, Drozdova A, Mohtashami A. 2023. The splay-list:
    A distribution-adaptive concurrent skip-list. Distributed Computing. 36, 395–418.'
  mla: 'Aksenov, Vitalii, et al. “The Splay-List: A Distribution-Adaptive Concurrent
    Skip-List.” <i>Distributed Computing</i>, vol. 36, Springer Nature, 2023, pp.
    395–418, doi:<a href="https://doi.org/10.1007/s00446-022-00441-x">10.1007/s00446-022-00441-x</a>.'
  short: V. Aksenov, D.-A. Alistarh, A. Drozdova, A. Mohtashami, Distributed Computing
    36 (2023) 395–418.
date_created: 2023-01-22T23:00:55Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2023-08-14T12:54:32Z
day: '01'
department:
- _id: DaAl
doi: 10.1007/s00446-022-00441-x
external_id:
  arxiv:
  - '2008.01009'
  isi:
  - '000913424000001'
intvolume: '        36'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2008.01009
month: '09'
oa: 1
oa_version: Preprint
page: 395-418
publication: Distributed Computing
publication_identifier:
  eissn:
  - 1432-0452
  issn:
  - 0178-2770
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The splay-list: A distribution-adaptive concurrent skip-list'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2023'
...
---
_id: '12331'
abstract:
- lang: eng
  text: High carrier mobility is critical to improving thermoelectric performance
    over a broad temperature range. However, traditional doping inevitably deteriorates
    carrier mobility. Herein, we develop a strategy for fine tuning of defects to
    improve carrier mobility. To begin, n-type PbTe is created by compensating for
    the intrinsic Pb vacancy in bare PbTe. Excess Pb2+ reduces vacancy scattering,
    resulting in a high carrier mobility of ∼3400 cm2 V–1 s–1. Then, excess Ag is
    introduced to compensate for the remaining intrinsic Pb vacancies. We find that
    excess Ag exhibits a dynamic doping process with increasing temperatures, increasing
    both the carrier concentration and carrier mobility throughout a wide temperature
    range; specifically, an ultrahigh carrier mobility ∼7300 cm2 V–1 s–1 is obtained
    for Pb1.01Te + 0.002Ag at 300 K. Moreover, the dynamic doping-induced high carrier
    concentration suppresses the bipolar thermal conductivity at high temperatures.
    The final step is using iodine to optimize the carrier concentration to ∼1019
    cm–3. Ultimately, a maximum ZT value of ∼1.5 and a large average ZTave value of
    ∼1.0 at 300–773 K are obtained for Pb1.01Te0.998I0.002 + 0.002Ag. These findings
    demonstrate that fine tuning of defects with <0.5% impurities can remarkably enhance
    carrier mobility and improve thermoelectric performance.
acknowledgement: The National Key Research and Development Program of China (2018YFA0702100),
  the Basic Science Center Project of the National Natural Science Foundation of China
  (51788104), the National Natural Science Foundation of China (51571007 and 51772012),
  the Beijing Natural Science Foundation (JQ18004), the 111 Project (B17002), the
  National Science Fund for Distinguished Young Scholars (51925101), and the FWF “Lise
  Meitner Fellowship” (grant agreement M2889-N). Open Access is funded by the Austrian
  Science Fund (FWF).
article_processing_charge: No
article_type: original
author:
- first_name: Siqi
  full_name: Wang, Siqi
  last_name: Wang
- first_name: Cheng
  full_name: Chang, Cheng
  id: 9E331C2E-9F27-11E9-AE48-5033E6697425
  last_name: Chang
  orcid: 0000-0002-9515-4277
- first_name: Shulin
  full_name: Bai, Shulin
  last_name: Bai
- first_name: Bingchao
  full_name: Qin, Bingchao
  last_name: Qin
- first_name: Yingcai
  full_name: Zhu, Yingcai
  last_name: Zhu
- first_name: Shaoping
  full_name: Zhan, Shaoping
  last_name: Zhan
- first_name: Junqing
  full_name: Zheng, Junqing
  last_name: Zheng
- first_name: Shuwei
  full_name: Tang, Shuwei
  last_name: Tang
- first_name: Li Dong
  full_name: Zhao, Li Dong
  last_name: Zhao
citation:
  ama: Wang S, Chang C, Bai S, et al. Fine tuning of defects enables high carrier
    mobility and enhanced thermoelectric performance of n-type PbTe. <i>Chemistry
    of Materials</i>. 2023;35(2):755-763. doi:<a href="https://doi.org/10.1021/acs.chemmater.2c03542">10.1021/acs.chemmater.2c03542</a>
  apa: Wang, S., Chang, C., Bai, S., Qin, B., Zhu, Y., Zhan, S., … Zhao, L. D. (2023).
    Fine tuning of defects enables high carrier mobility and enhanced thermoelectric
    performance of n-type PbTe. <i>Chemistry of Materials</i>. American Chemical Society.
    <a href="https://doi.org/10.1021/acs.chemmater.2c03542">https://doi.org/10.1021/acs.chemmater.2c03542</a>
  chicago: Wang, Siqi, Cheng Chang, Shulin Bai, Bingchao Qin, Yingcai Zhu, Shaoping
    Zhan, Junqing Zheng, Shuwei Tang, and Li Dong Zhao. “Fine Tuning of Defects Enables
    High Carrier Mobility and Enhanced Thermoelectric Performance of N-Type PbTe.”
    <i>Chemistry of Materials</i>. American Chemical Society, 2023. <a href="https://doi.org/10.1021/acs.chemmater.2c03542">https://doi.org/10.1021/acs.chemmater.2c03542</a>.
  ieee: S. Wang <i>et al.</i>, “Fine tuning of defects enables high carrier mobility
    and enhanced thermoelectric performance of n-type PbTe,” <i>Chemistry of Materials</i>,
    vol. 35, no. 2. American Chemical Society, pp. 755–763, 2023.
  ista: Wang S, Chang C, Bai S, Qin B, Zhu Y, Zhan S, Zheng J, Tang S, Zhao LD. 2023.
    Fine tuning of defects enables high carrier mobility and enhanced thermoelectric
    performance of n-type PbTe. Chemistry of Materials. 35(2), 755–763.
  mla: Wang, Siqi, et al. “Fine Tuning of Defects Enables High Carrier Mobility and
    Enhanced Thermoelectric Performance of N-Type PbTe.” <i>Chemistry of Materials</i>,
    vol. 35, no. 2, American Chemical Society, 2023, pp. 755–63, doi:<a href="https://doi.org/10.1021/acs.chemmater.2c03542">10.1021/acs.chemmater.2c03542</a>.
  short: S. Wang, C. Chang, S. Bai, B. Qin, Y. Zhu, S. Zhan, J. Zheng, S. Tang, L.D.
    Zhao, Chemistry of Materials 35 (2023) 755–763.
corr_author: '1'
date_created: 2023-01-22T23:00:55Z
date_published: 2023-01-24T00:00:00Z
date_updated: 2025-04-23T08:47:37Z
day: '24'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1021/acs.chemmater.2c03542
external_id:
  isi:
  - '000914749700001'
  pmid:
  - '36711054'
file:
- access_level: open_access
  checksum: b21dca2aa7a80c068bc256bdd1fea9df
  content_type: application/pdf
  creator: dernst
  date_created: 2023-08-14T12:57:25Z
  date_updated: 2023-08-14T12:57:25Z
  file_id: '14055'
  file_name: 2023_ChemistryMaterials_Wang.pdf
  file_size: 2961043
  relation: main_file
  success: 1
file_date_updated: 2023-08-14T12:57:25Z
has_accepted_license: '1'
intvolume: '        35'
isi: 1
issue: '2'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 755-763
pmid: 1
project:
- _id: 9B8804FC-BA93-11EA-9121-9846C619BF3A
  grant_number: M02889
  name: Bottom-up Engineering for Thermoelectric Applications
publication: Chemistry of Materials
publication_identifier:
  eissn:
  - 1520-5002
  issn:
  - 0897-4756
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fine tuning of defects enables high carrier mobility and enhanced thermoelectric
  performance of n-type PbTe
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2023'
...
---
_id: '12406'
abstract:
- lang: eng
  text: Let X be a sufficiently large positive integer. We prove that one may choose
    a subset S of primes with cardinality O(logX) such that a positive proportion
    of integers less than X can be represented by x2+py2 for at least one p∈S.
acknowledgement: "This article is a version the author’s master thesis at the University
  of Bonn. The author would like to thank his advisor Valentin Blomer for introducing
  the problem, and giving generous feedback and encouragement along the way, especially
  during the global pandemic.\r\nThe author thanks Edgar Assing for his lectures on
  analytic number theory. Finally, the author is grateful to the anonymous referees
  for their valuable time and comments.\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Yijie
  full_name: Diao, Yijie
  id: 7b7eb4ca-eb2c-11ec-b98b-accec0b20c3b
  last_name: Diao
  orcid: 0000-0002-4989-5330
citation:
  ama: Diao Y. Density of the union of positive diagonal binary quadratic forms. <i>Acta
    Arithmetica</i>. 2023;207:1-17. doi:<a href="https://doi.org/10.4064/aa210830-24-11">10.4064/aa210830-24-11</a>
  apa: Diao, Y. (2023). Density of the union of positive diagonal binary quadratic
    forms. <i>Acta Arithmetica</i>. Instytut Matematyczny. <a href="https://doi.org/10.4064/aa210830-24-11">https://doi.org/10.4064/aa210830-24-11</a>
  chicago: Diao, Yijie. “Density of the Union of Positive Diagonal Binary Quadratic
    Forms.” <i>Acta Arithmetica</i>. Instytut Matematyczny, 2023. <a href="https://doi.org/10.4064/aa210830-24-11">https://doi.org/10.4064/aa210830-24-11</a>.
  ieee: Y. Diao, “Density of the union of positive diagonal binary quadratic forms,”
    <i>Acta Arithmetica</i>, vol. 207. Instytut Matematyczny, pp. 1–17, 2023.
  ista: Diao Y. 2023. Density of the union of positive diagonal binary quadratic forms.
    Acta Arithmetica. 207, 1–17.
  mla: Diao, Yijie. “Density of the Union of Positive Diagonal Binary Quadratic Forms.”
    <i>Acta Arithmetica</i>, vol. 207, Instytut Matematyczny, 2023, pp. 1–17, doi:<a
    href="https://doi.org/10.4064/aa210830-24-11">10.4064/aa210830-24-11</a>.
  short: Y. Diao, Acta Arithmetica 207 (2023) 1–17.
corr_author: '1'
date_created: 2023-01-26T21:17:04Z
date_published: 2023-01-09T00:00:00Z
date_updated: 2024-10-21T06:01:30Z
day: '09'
department:
- _id: GradSch
doi: 10.4064/aa210830-24-11
external_id:
  arxiv:
  - '2103.08268'
  isi:
  - '000912903000001'
intvolume: '       207'
isi: 1
keyword:
- Algebra
- Number Theory
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2103.08268
month: '01'
oa: 1
oa_version: Preprint
page: 1-17
publication: Acta Arithmetica
publication_identifier:
  eissn:
  - 1730-6264
  issn:
  - 0065-1036
publication_status: published
publisher: Instytut Matematyczny
quality_controlled: '1'
scopus_import: '1'
status: public
title: Density of the union of positive diagonal binary quadratic forms
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 207
year: '2023'
...
---
_id: '12407'
abstract:
- lang: eng
  text: "As the complexity and criticality of software increase every year, so does
    the importance of run-time monitoring. Third-party monitoring, with limited knowledge
    of the monitored software, and best-effort monitoring, which keeps pace with the
    monitored software, are especially valuable, yet underexplored areas of run-time
    monitoring. Most existing monitoring frameworks do not support their combination
    because they either require access to the monitored code for instrumentation purposes
    or the processing of all observed events, or both.\r\n\r\nWe present a middleware
    framework, VAMOS, for the run-time monitoring of software which is explicitly
    designed to support third-party and best-effort scenarios. The design goals of
    VAMOS are (i) efficiency (keeping pace at low overhead), (ii) flexibility (the
    ability to monitor black-box code through a variety of different event channels,
    and the connectability to monitors written in different specification languages),
    and (iii) ease-of-use. To achieve its goals, VAMOS combines aspects of event broker
    and event recognition systems with aspects of stream processing systems.\r\n\r\nWe
    implemented a prototype toolchain for VAMOS and conducted experiments including
    a case study of monitoring for data races. The results indicate that VAMOS enables
    writing useful yet efficient monitors, is compatible with a variety of event sources
    and monitor specifications, and simplifies key aspects of setting up a monitoring
    system from scratch."
acknowledgement: "This work was supported in part by the ERC-2020-AdG 101020093. \r\nThe
  authors would like to thank the anonymous FASE reviewers for their valuable feedback
  and suggestions."
alternative_title:
- IST Austria Technical Report
article_processing_charge: No
author:
- first_name: Marek
  full_name: Chalupa, Marek
  id: 87e34708-d6c6-11ec-9f5b-9391e7be2463
  last_name: Chalupa
- first_name: Fabian
  full_name: Mühlböck, Fabian
  id: 6395C5F6-89DF-11E9-9C97-6BDFE5697425
  last_name: Mühlböck
  orcid: 0000-0003-1548-0177
- first_name: Stefanie
  full_name: Muroya Lei, Stefanie
  id: a376de31-8972-11ed-ae7b-d0251c13c8ff
  last_name: Muroya Lei
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
citation:
  ama: 'Chalupa M, Mühlböck F, Muroya Lei S, Henzinger TA. <i>VAMOS: Middleware for
    Best-Effort Third-Party Monitoring</i>. Institute of Science and Technology Austria;
    2023. doi:<a href="https://doi.org/10.15479/AT:ISTA:12407">10.15479/AT:ISTA:12407</a>'
  apa: 'Chalupa, M., Mühlböck, F., Muroya Lei, S., &#38; Henzinger, T. A. (2023).
    <i>VAMOS: Middleware for Best-Effort Third-Party Monitoring</i>. Institute of
    Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:12407">https://doi.org/10.15479/AT:ISTA:12407</a>'
  chicago: 'Chalupa, Marek, Fabian Mühlböck, Stefanie Muroya Lei, and Thomas A Henzinger.
    <i>VAMOS: Middleware for Best-Effort Third-Party Monitoring</i>. Institute of
    Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/AT:ISTA:12407">https://doi.org/10.15479/AT:ISTA:12407</a>.'
  ieee: 'M. Chalupa, F. Mühlböck, S. Muroya Lei, and T. A. Henzinger, <i>VAMOS: Middleware
    for Best-Effort Third-Party Monitoring</i>. Institute of Science and Technology
    Austria, 2023.'
  ista: 'Chalupa M, Mühlböck F, Muroya Lei S, Henzinger TA. 2023. VAMOS: Middleware
    for Best-Effort Third-Party Monitoring, Institute of Science and Technology Austria,
    38p.'
  mla: 'Chalupa, Marek, et al. <i>VAMOS: Middleware for Best-Effort Third-Party Monitoring</i>.
    Institute of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/AT:ISTA:12407">10.15479/AT:ISTA:12407</a>.'
  short: 'M. Chalupa, F. Mühlböck, S. Muroya Lei, T.A. Henzinger, VAMOS: Middleware
    for Best-Effort Third-Party Monitoring, Institute of Science and Technology Austria,
    2023.'
corr_author: '1'
date_created: 2023-01-27T03:18:08Z
date_published: 2023-01-27T00:00:00Z
date_updated: 2025-09-09T12:25:29Z
day: '27'
ddc:
- '005'
department:
- _id: ToHe
doi: 10.15479/AT:ISTA:12407
ec_funded: 1
file:
- access_level: open_access
  checksum: 55426e463fdeafe9777fc3ff635154c7
  content_type: application/pdf
  creator: fmuehlbo
  date_created: 2023-01-27T03:18:34Z
  date_updated: 2023-01-27T03:18:34Z
  file_id: '12408'
  file_name: main.pdf
  file_size: 662409
  relation: main_file
  success: 1
file_date_updated: 2023-01-27T03:18:34Z
has_accepted_license: '1'
keyword:
- runtime monitoring
- best effort
- third party
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: '38'
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication_identifier:
  eissn:
  - 2664-1690
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '12856'
    relation: later_version
    status: public
status: public
title: 'VAMOS: Middleware for Best-Effort Third-Party Monitoring'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12421'
abstract:
- lang: eng
  text: The actin cytoskeleton plays a key role in cell migration and cellular morphodynamics
    in most eukaryotes. The ability of the actin cytoskeleton to assemble and disassemble
    in a spatiotemporally controlled manner allows it to form higher-order structures,
    which can generate forces required for a cell to explore and navigate through
    its environment. It is regulated not only via a complex synergistic and competitive
    interplay between actin-binding proteins (ABP), but also by filament biochemistry
    and filament geometry. The lack of structural insights into how geometry and ABPs
    regulate the actin cytoskeleton limits our understanding of the molecular mechanisms
    that define actin cytoskeleton remodeling and, in turn, impact emerging cell migration
    characteristics. With the advent of cryo-electron microscopy (cryo-EM) and advanced
    computational methods, it is now possible to define these molecular mechanisms
    involving actin and its interactors at both atomic and ultra-structural levels
    in vitro and in cellulo. In this review, we will provide an overview of the available
    cryo-EM methods, applicable to further our understanding of the actin cytoskeleton,
    specifically in the context of cell migration. We will discuss how these methods
    have been employed to elucidate ABP- and geometry-defined regulatory mechanisms
    in initiating, maintaining, and disassembling cellular actin networks in migratory
    protrusions.
acknowledgement: 'We apologize for not being able to mention and cite additional excellent
  work that would have fit the scope of this review, due to space restraints. We thank
  Jesse Hansen for comments on the manuscript. We acknowledge support from the Austrian
  Science Fund (FWF): P33367 and the Institute of Science and Technology Austria.'
article_processing_charge: No
article_type: original
author:
- first_name: Florian
  full_name: Fäßler, Florian
  id: 404F5528-F248-11E8-B48F-1D18A9856A87
  last_name: Fäßler
  orcid: 0000-0001-7149-769X
- first_name: Manjunath
  full_name: Javoor, Manjunath
  id: 305ab18b-dc7d-11ea-9b2f-b58195228ea2
  last_name: Javoor
- first_name: Florian KM
  full_name: Schur, Florian KM
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
citation:
  ama: Fäßler F, Javoor M, Schur FK. Deciphering the molecular mechanisms of actin
    cytoskeleton regulation in cell migration using cryo-EM. <i>Biochemical Society
    Transactions</i>. 2023;51(1):87-99. doi:<a href="https://doi.org/10.1042/bst20220221">10.1042/bst20220221</a>
  apa: Fäßler, F., Javoor, M., &#38; Schur, F. K. (2023). Deciphering the molecular
    mechanisms of actin cytoskeleton regulation in cell migration using cryo-EM. <i>Biochemical
    Society Transactions</i>. Portland Press. <a href="https://doi.org/10.1042/bst20220221">https://doi.org/10.1042/bst20220221</a>
  chicago: Fäßler, Florian, Manjunath Javoor, and Florian KM Schur. “Deciphering the
    Molecular Mechanisms of Actin Cytoskeleton Regulation in Cell Migration Using
    Cryo-EM.” <i>Biochemical Society Transactions</i>. Portland Press, 2023. <a href="https://doi.org/10.1042/bst20220221">https://doi.org/10.1042/bst20220221</a>.
  ieee: F. Fäßler, M. Javoor, and F. K. Schur, “Deciphering the molecular mechanisms
    of actin cytoskeleton regulation in cell migration using cryo-EM,” <i>Biochemical
    Society Transactions</i>, vol. 51, no. 1. Portland Press, pp. 87–99, 2023.
  ista: Fäßler F, Javoor M, Schur FK. 2023. Deciphering the molecular mechanisms of
    actin cytoskeleton regulation in cell migration using cryo-EM. Biochemical Society
    Transactions. 51(1), 87–99.
  mla: Fäßler, Florian, et al. “Deciphering the Molecular Mechanisms of Actin Cytoskeleton
    Regulation in Cell Migration Using Cryo-EM.” <i>Biochemical Society Transactions</i>,
    vol. 51, no. 1, Portland Press, 2023, pp. 87–99, doi:<a href="https://doi.org/10.1042/bst20220221">10.1042/bst20220221</a>.
  short: F. Fäßler, M. Javoor, F.K. Schur, Biochemical Society Transactions 51 (2023)
    87–99.
corr_author: '1'
date_created: 2023-01-27T10:08:19Z
date_published: 2023-02-01T00:00:00Z
date_updated: 2025-04-23T08:47:15Z
day: '01'
ddc:
- '570'
department:
- _id: FlSc
doi: 10.1042/bst20220221
external_id:
  isi:
  - '000926043100001'
  pmid:
  - '36695514'
file:
- access_level: open_access
  checksum: 4e7069845e3dad22bb44fb71ec624c60
  content_type: application/pdf
  creator: dernst
  date_created: 2023-03-16T07:58:16Z
  date_updated: 2023-03-16T07:58:16Z
  file_id: '12728'
  file_name: 2023_BioChemicalSocietyTransactions_Faessler.pdf
  file_size: 10045006
  relation: main_file
  success: 1
file_date_updated: 2023-03-16T07:58:16Z
has_accepted_license: '1'
intvolume: '        51'
isi: 1
issue: '1'
keyword:
- Biochemistry
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 87-99
pmid: 1
project:
- _id: 9B954C5C-BA93-11EA-9121-9846C619BF3A
  grant_number: P33367
  name: Structure and isoform diversity of the Arp2/3 complex
publication: Biochemical Society Transactions
publication_identifier:
  eissn:
  - 1470-8752
  issn:
  - 0300-5127
publication_status: published
publisher: Portland Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Deciphering the molecular mechanisms of actin cytoskeleton regulation in cell
  migration using cryo-EM
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 51
year: '2023'
...
---
_id: '12427'
abstract:
- lang: eng
  text: 'Let k be a number field and X a smooth, geometrically integral quasi-projective
    variety over k. For any linear algebraic group G over k and any G-torsor g : Z
    → X, we observe that if the étale-Brauer obstruction is the only one for strong
    approximation off a finite set of places S for all twists of Z by elements in
    H^1(k, G), then the étale-Brauer obstruction is the only one for strong approximation
    off a finite set of places S for X. As an application, we show that any homogeneous
    space of the form G/H with G a connected linear algebraic group over k satisfies
    strong approximation off the infinite places with étale-Brauer obstruction, under
    some compactness assumptions when k is totally real. We also prove more refined
    strong approximation results for homogeneous spaces of the form G/H with G semisimple
    simply connected and H finite, using the theory of torsors and descent.'
article_processing_charge: No
article_type: original
author:
- first_name: Francesca
  full_name: Balestrieri, Francesca
  id: 3ACCD756-F248-11E8-B48F-1D18A9856A87
  last_name: Balestrieri
citation:
  ama: Balestrieri F. Some remarks on strong approximation and applications to homogeneous
    spaces of linear algebraic groups. <i>Proceedings of the American Mathematical
    Society</i>. 2023;151(3):907-914. doi:<a href="https://doi.org/10.1090/proc/15239">10.1090/proc/15239</a>
  apa: Balestrieri, F. (2023). Some remarks on strong approximation and applications
    to homogeneous spaces of linear algebraic groups. <i>Proceedings of the American
    Mathematical Society</i>. American Mathematical Society. <a href="https://doi.org/10.1090/proc/15239">https://doi.org/10.1090/proc/15239</a>
  chicago: Balestrieri, Francesca. “Some Remarks on Strong Approximation and Applications
    to Homogeneous Spaces of Linear Algebraic Groups.” <i>Proceedings of the American
    Mathematical Society</i>. American Mathematical Society, 2023. <a href="https://doi.org/10.1090/proc/15239">https://doi.org/10.1090/proc/15239</a>.
  ieee: F. Balestrieri, “Some remarks on strong approximation and applications to
    homogeneous spaces of linear algebraic groups,” <i>Proceedings of the American
    Mathematical Society</i>, vol. 151, no. 3. American Mathematical Society, pp.
    907–914, 2023.
  ista: Balestrieri F. 2023. Some remarks on strong approximation and applications
    to homogeneous spaces of linear algebraic groups. Proceedings of the American
    Mathematical Society. 151(3), 907–914.
  mla: Balestrieri, Francesca. “Some Remarks on Strong Approximation and Applications
    to Homogeneous Spaces of Linear Algebraic Groups.” <i>Proceedings of the American
    Mathematical Society</i>, vol. 151, no. 3, American Mathematical Society, 2023,
    pp. 907–14, doi:<a href="https://doi.org/10.1090/proc/15239">10.1090/proc/15239</a>.
  short: F. Balestrieri, Proceedings of the American Mathematical Society 151 (2023)
    907–914.
corr_author: '1'
date_created: 2023-01-29T23:00:58Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2024-10-09T21:04:07Z
day: '01'
department:
- _id: TiBr
doi: 10.1090/proc/15239
external_id:
  isi:
  - '000898440000001'
intvolume: '       151'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://hal.science/hal-03013498/
month: '01'
oa: 1
oa_version: Preprint
page: 907-914
publication: Proceedings of the American Mathematical Society
publication_identifier:
  eissn:
  - 1088-6826
  issn:
  - 0002-9939
publication_status: published
publisher: American Mathematical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Some remarks on strong approximation and applications to homogeneous spaces
  of linear algebraic groups
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 151
year: '2023'
...
---
_id: '12428'
abstract:
- lang: eng
  text: The mammary gland consists of a bilayered epithelial structure with an extensively
    branched morphology. The majority of this epithelial tree is laid down during
    puberty, during which actively proliferating terminal end buds repeatedly elongate
    and bifurcate to form the basic structure of the ductal tree. Mammary ducts consist
    of a basal and luminal cell layer with a multitude of identified sub-lineages
    within both layers. The understanding of how these different cell lineages are
    cooperatively driving branching morphogenesis is a problem of crossing multiple
    scales, as this requires information on the macroscopic branched structure of
    the gland, as well as data on single-cell dynamics driving the morphogenic program.
    Here we describe a method to combine genetic lineage tracing with whole-gland
    branching analysis. Quantitative data on the global organ structure can be used
    to derive a model for mammary gland branching morphogenesis and provide a backbone
    on which the dynamics of individual cell lineages can be simulated and compared
    to lineage-tracing approaches. Eventually, these quantitative models and experiments
    allow to understand the couplings between the macroscopic shape of the mammary
    gland and the underlying single-cell dynamics driving branching morphogenesis.
alternative_title:
- Methods in Molecular Biology
article_processing_charge: No
author:
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Colinda L.G.J.
  full_name: Scheele, Colinda L.G.J.
  last_name: Scheele
citation:
  ama: 'Hannezo EB, Scheele CLGJ. A Guide Toward Multi-scale and Quantitative Branching
    Analysis in the Mammary Gland. In: Margadant C, ed. <i>Cell Migration in Three
    Dimensions</i>. Vol 2608. MIMB. Springer Nature; 2023:183-205. doi:<a href="https://doi.org/10.1007/978-1-0716-2887-4_12">10.1007/978-1-0716-2887-4_12</a>'
  apa: Hannezo, E. B., &#38; Scheele, C. L. G. J. (2023). A Guide Toward Multi-scale
    and Quantitative Branching Analysis in the Mammary Gland. In C. Margadant (Ed.),
    <i>Cell Migration in Three Dimensions</i> (Vol. 2608, pp. 183–205). Springer Nature.
    <a href="https://doi.org/10.1007/978-1-0716-2887-4_12">https://doi.org/10.1007/978-1-0716-2887-4_12</a>
  chicago: Hannezo, Edouard B, and Colinda L.G.J. Scheele. “A Guide Toward Multi-Scale
    and Quantitative Branching Analysis in the Mammary Gland.” In <i>Cell Migration
    in Three Dimensions</i>, edited by Coert Margadant, 2608:183–205. MIMB. Springer
    Nature, 2023. <a href="https://doi.org/10.1007/978-1-0716-2887-4_12">https://doi.org/10.1007/978-1-0716-2887-4_12</a>.
  ieee: E. B. Hannezo and C. L. G. J. Scheele, “A Guide Toward Multi-scale and Quantitative
    Branching Analysis in the Mammary Gland,” in <i>Cell Migration in Three Dimensions</i>,
    vol. 2608, C. Margadant, Ed. Springer Nature, 2023, pp. 183–205.
  ista: 'Hannezo EB, Scheele CLGJ. 2023.A Guide Toward Multi-scale and Quantitative
    Branching Analysis in the Mammary Gland. In: Cell Migration in Three Dimensions.
    Methods in Molecular Biology, vol. 2608, 183–205.'
  mla: Hannezo, Edouard B., and Colinda L. G. J. Scheele. “A Guide Toward Multi-Scale
    and Quantitative Branching Analysis in the Mammary Gland.” <i>Cell Migration in
    Three Dimensions</i>, edited by Coert Margadant, vol. 2608, Springer Nature, 2023,
    pp. 183–205, doi:<a href="https://doi.org/10.1007/978-1-0716-2887-4_12">10.1007/978-1-0716-2887-4_12</a>.
  short: E.B. Hannezo, C.L.G.J. Scheele, in:, C. Margadant (Ed.), Cell Migration in
    Three Dimensions, Springer Nature, 2023, pp. 183–205.
corr_author: '1'
date_created: 2023-01-29T23:00:58Z
date_published: 2023-01-19T00:00:00Z
date_updated: 2024-10-09T21:04:04Z
day: '19'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1007/978-1-0716-2887-4_12
editor:
- first_name: Coert
  full_name: Margadant, Coert
  last_name: Margadant
external_id:
  pmid:
  - '36653709'
file:
- access_level: open_access
  checksum: aec1b8d3ba938ddf9d8fcb777f3c38ee
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-03T10:56:39Z
  date_updated: 2023-02-03T10:56:39Z
  file_id: '12500'
  file_name: 2023_MIMB_Hannezo.pdf
  file_size: 826598
  relation: main_file
  success: 1
file_date_updated: 2023-02-03T10:56:39Z
has_accepted_license: '1'
intvolume: '      2608'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 183-205
pmid: 1
publication: Cell Migration in Three Dimensions
publication_identifier:
  eisbn:
  - '9781071628874'
  eissn:
  - 1940-6029
  isbn:
  - '9781071628867'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: MIMB
status: public
title: A Guide Toward Multi-scale and Quantitative Branching Analysis in the Mammary
  Gland
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2608
year: '2023'
...
---
_id: '12429'
abstract:
- lang: eng
  text: In this paper, we consider traces at initial times for functions with mixed
    time-space smoothness. Such results are often needed in the theory of evolution
    equations. Our result extends and unifies many previous results. Our main improvement
    is that we can allow general interpolation couples. The abstract results are applied
    to regularity problems for fractional evolution equations and stochastic evolution
    equations, where uniform trace estimates on the half-line are shown.
acknowledgement: The first author has been partially supported by the Nachwuchsring—Network
  for the promotion of young scientists—at TU Kaiserslautern. The second and third
  authors were supported by the Vidi subsidy 639.032.427 of the Netherlands Organisation
  for Scientific Research (NWO).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Antonio
  full_name: Agresti, Antonio
  id: 673cd0cc-9b9a-11eb-b144-88f30e1fbb72
  last_name: Agresti
  orcid: 0000-0002-9573-2962
- first_name: Nick
  full_name: Lindemulder, Nick
  last_name: Lindemulder
- first_name: Mark
  full_name: Veraar, Mark
  last_name: Veraar
citation:
  ama: Agresti A, Lindemulder N, Veraar M. On the trace embedding and its applications
    to evolution equations. <i>Mathematische Nachrichten</i>. 2023;296(4):1319-1350.
    doi:<a href="https://doi.org/10.1002/mana.202100192">10.1002/mana.202100192</a>
  apa: Agresti, A., Lindemulder, N., &#38; Veraar, M. (2023). On the trace embedding
    and its applications to evolution equations. <i>Mathematische Nachrichten</i>.
    Wiley. <a href="https://doi.org/10.1002/mana.202100192">https://doi.org/10.1002/mana.202100192</a>
  chicago: Agresti, Antonio, Nick Lindemulder, and Mark Veraar. “On the Trace Embedding
    and Its Applications to Evolution Equations.” <i>Mathematische Nachrichten</i>.
    Wiley, 2023. <a href="https://doi.org/10.1002/mana.202100192">https://doi.org/10.1002/mana.202100192</a>.
  ieee: A. Agresti, N. Lindemulder, and M. Veraar, “On the trace embedding and its
    applications to evolution equations,” <i>Mathematische Nachrichten</i>, vol. 296,
    no. 4. Wiley, pp. 1319–1350, 2023.
  ista: Agresti A, Lindemulder N, Veraar M. 2023. On the trace embedding and its applications
    to evolution equations. Mathematische Nachrichten. 296(4), 1319–1350.
  mla: Agresti, Antonio, et al. “On the Trace Embedding and Its Applications to Evolution
    Equations.” <i>Mathematische Nachrichten</i>, vol. 296, no. 4, Wiley, 2023, pp.
    1319–50, doi:<a href="https://doi.org/10.1002/mana.202100192">10.1002/mana.202100192</a>.
  short: A. Agresti, N. Lindemulder, M. Veraar, Mathematische Nachrichten 296 (2023)
    1319–1350.
date_created: 2023-01-29T23:00:59Z
date_published: 2023-04-01T00:00:00Z
date_updated: 2023-08-16T11:41:42Z
day: '01'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1002/mana.202100192
external_id:
  arxiv:
  - '2104.05063'
  isi:
  - '000914134900001'
file:
- access_level: open_access
  checksum: 6f099f1d064173784d1a27716a2cc795
  content_type: application/pdf
  creator: dernst
  date_created: 2023-08-16T11:40:02Z
  date_updated: 2023-08-16T11:40:02Z
  file_id: '14067'
  file_name: 2023_MathNachrichten_Agresti.pdf
  file_size: 449280
  relation: main_file
  success: 1
file_date_updated: 2023-08-16T11:40:02Z
has_accepted_license: '1'
intvolume: '       296'
isi: 1
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '04'
oa: 1
oa_version: Published Version
page: 1319-1350
publication: Mathematische Nachrichten
publication_identifier:
  eissn:
  - 1522-2616
  issn:
  - 0025-584X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the trace embedding and its applications to evolution equations
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 296
year: '2023'
...
---
_id: '12430'
abstract:
- lang: eng
  text: We study the time evolution of the Nelson model in a mean-field limit in which
    N nonrelativistic bosons weakly couple (with respect to the particle number) to
    a positive or zero mass quantized scalar field. Our main result is the derivation
    of the Bogoliubov dynamics and higher-order corrections. More precisely, we prove
    the convergence of the approximate wave function to the many-body wave function
    in norm, with a convergence rate proportional to the number of corrections taken
    into account in the approximation. We prove an analogous result for the unitary
    propagator. As an application, we derive a simple system of partial differential
    equations describing the time evolution of the first- and second-order approximations
    to the one-particle reduced density matrices of the particles and the quantum
    field, respectively.
article_number: '2350006'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Marco
  full_name: Falconi, Marco
  last_name: Falconi
- first_name: Nikolai K
  full_name: Leopold, Nikolai K
  id: 4BC40BEC-F248-11E8-B48F-1D18A9856A87
  last_name: Leopold
  orcid: 0000-0002-0495-6822
- first_name: David Johannes
  full_name: Mitrouskas, David Johannes
  id: cbddacee-2b11-11eb-a02e-a2e14d04e52d
  last_name: Mitrouskas
- first_name: Sören P
  full_name: Petrat, Sören P
  id: 40AC02DC-F248-11E8-B48F-1D18A9856A87
  last_name: Petrat
  orcid: 0000-0002-9166-5889
citation:
  ama: Falconi M, Leopold NK, Mitrouskas DJ, Petrat SP. Bogoliubov dynamics and higher-order
    corrections for the regularized Nelson model. <i>Reviews in Mathematical Physics</i>.
    2023;35(4). doi:<a href="https://doi.org/10.1142/S0129055X2350006X">10.1142/S0129055X2350006X</a>
  apa: Falconi, M., Leopold, N. K., Mitrouskas, D. J., &#38; Petrat, S. P. (2023).
    Bogoliubov dynamics and higher-order corrections for the regularized Nelson model.
    <i>Reviews in Mathematical Physics</i>. World Scientific Publishing. <a href="https://doi.org/10.1142/S0129055X2350006X">https://doi.org/10.1142/S0129055X2350006X</a>
  chicago: Falconi, Marco, Nikolai K Leopold, David Johannes Mitrouskas, and Sören
    P Petrat. “Bogoliubov Dynamics and Higher-Order Corrections for the Regularized
    Nelson Model.” <i>Reviews in Mathematical Physics</i>. World Scientific Publishing,
    2023. <a href="https://doi.org/10.1142/S0129055X2350006X">https://doi.org/10.1142/S0129055X2350006X</a>.
  ieee: M. Falconi, N. K. Leopold, D. J. Mitrouskas, and S. P. Petrat, “Bogoliubov
    dynamics and higher-order corrections for the regularized Nelson model,” <i>Reviews
    in Mathematical Physics</i>, vol. 35, no. 4. World Scientific Publishing, 2023.
  ista: Falconi M, Leopold NK, Mitrouskas DJ, Petrat SP. 2023. Bogoliubov dynamics
    and higher-order corrections for the regularized Nelson model. Reviews in Mathematical
    Physics. 35(4), 2350006.
  mla: Falconi, Marco, et al. “Bogoliubov Dynamics and Higher-Order Corrections for
    the Regularized Nelson Model.” <i>Reviews in Mathematical Physics</i>, vol. 35,
    no. 4, 2350006, World Scientific Publishing, 2023, doi:<a href="https://doi.org/10.1142/S0129055X2350006X">10.1142/S0129055X2350006X</a>.
  short: M. Falconi, N.K. Leopold, D.J. Mitrouskas, S.P. Petrat, Reviews in Mathematical
    Physics 35 (2023).
date_created: 2023-01-29T23:00:59Z
date_published: 2023-01-09T00:00:00Z
date_updated: 2023-08-16T11:47:27Z
day: '09'
department:
- _id: RoSe
doi: 10.1142/S0129055X2350006X
external_id:
  arxiv:
  - '2110.00458'
  isi:
  - '000909760300001'
intvolume: '        35'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2110.00458'
month: '01'
oa: 1
oa_version: Preprint
publication: Reviews in Mathematical Physics
publication_identifier:
  issn:
  - 0129-055X
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bogoliubov dynamics and higher-order corrections for the regularized Nelson
  model
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2023'
...
---
_id: '12467'
abstract:
- lang: eng
  text: Safety and liveness are elementary concepts of computation, and the foundation
    of many verification paradigms. The safety-liveness classification of boolean
    properties characterizes whether a given property can be falsified by observing
    a finite prefix of an infinite computation trace (always for safety, never for
    liveness). In quantitative specification and verification, properties assign not
    truth values, but quantitative values to infinite traces (e.g., a cost, or the
    distance to a boolean property). We introduce quantitative safety and liveness,
    and we prove that our definitions induce conservative quantitative generalizations
    of both (1)~the safety-progress hierarchy of boolean properties and (2)~the safety-liveness
    decomposition of boolean properties. In particular, we show that every quantitative
    property can be written as the pointwise minimum of a quantitative safety property
    and a quantitative liveness property. Consequently, like boolean properties, also
    quantitative properties can be min-decomposed into safety and liveness parts,
    or alternatively, max-decomposed into co-safety and co-liveness parts. Moreover,
    quantitative properties can be approximated naturally. We prove that every quantitative
    property that has both safe and co-safe approximations can be monitored arbitrarily
    precisely by a monitor that uses only a finite number of states.
acknowledgement: We thank the anonymous reviewers for their helpful comments. This
  work was supported in part by the ERC-2020-AdG 101020093.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Nicolas Adrien
  full_name: Mazzocchi, Nicolas Adrien
  id: b26baa86-3308-11ec-87b0-8990f34baa85
  last_name: Mazzocchi
- first_name: Naci E
  full_name: Sarac, Naci E
  id: 8C6B42F8-C8E6-11E9-A03A-F2DCE5697425
  last_name: Sarac
citation:
  ama: 'Henzinger TA, Mazzocchi NA, Sarac NE. Quantitative safety and liveness. In:
    <i>26th International Conference Foundations of Software Science and Computation
    Structures</i>. Vol 13992. Springer Nature; 2023:349-370. doi:<a href="https://doi.org/10.1007/978-3-031-30829-1_17">10.1007/978-3-031-30829-1_17</a>'
  apa: 'Henzinger, T. A., Mazzocchi, N. A., &#38; Sarac, N. E. (2023). Quantitative
    safety and liveness. In <i>26th International Conference Foundations of Software
    Science and Computation Structures</i> (Vol. 13992, pp. 349–370). Paris, France:
    Springer Nature. <a href="https://doi.org/10.1007/978-3-031-30829-1_17">https://doi.org/10.1007/978-3-031-30829-1_17</a>'
  chicago: Henzinger, Thomas A, Nicolas Adrien Mazzocchi, and Naci E Sarac. “Quantitative
    Safety and Liveness.” In <i>26th International Conference Foundations of Software
    Science and Computation Structures</i>, 13992:349–70. Springer Nature, 2023. <a
    href="https://doi.org/10.1007/978-3-031-30829-1_17">https://doi.org/10.1007/978-3-031-30829-1_17</a>.
  ieee: T. A. Henzinger, N. A. Mazzocchi, and N. E. Sarac, “Quantitative safety and
    liveness,” in <i>26th International Conference Foundations of Software Science
    and Computation Structures</i>, Paris, France, 2023, vol. 13992, pp. 349–370.
  ista: 'Henzinger TA, Mazzocchi NA, Sarac NE. 2023. Quantitative safety and liveness.
    26th International Conference Foundations of Software Science and Computation
    Structures. FOSSACS: Foundations of Software Science and Computation Structures,
    LNCS, vol. 13992, 349–370.'
  mla: Henzinger, Thomas A., et al. “Quantitative Safety and Liveness.” <i>26th International
    Conference Foundations of Software Science and Computation Structures</i>, vol.
    13992, Springer Nature, 2023, pp. 349–70, doi:<a href="https://doi.org/10.1007/978-3-031-30829-1_17">10.1007/978-3-031-30829-1_17</a>.
  short: T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, in:, 26th International Conference
    Foundations of Software Science and Computation Structures, Springer Nature, 2023,
    pp. 349–370.
conference:
  end_date: 2023-04-27
  location: Paris, France
  name: 'FOSSACS: Foundations of Software Science and Computation Structures'
  start_date: 2023-04-22
corr_author: '1'
date_created: 2023-01-31T07:23:56Z
date_published: 2023-04-21T00:00:00Z
date_updated: 2025-09-09T12:21:08Z
day: '21'
ddc:
- '000'
department:
- _id: GradSch
- _id: ToHe
doi: 10.1007/978-3-031-30829-1_17
ec_funded: 1
external_id:
  arxiv:
  - '2301.11175'
  isi:
  - '001288609300017'
file:
- access_level: open_access
  checksum: 981025aed580b6b27c426cb8856cf63e
  content_type: application/pdf
  creator: esarac
  date_created: 2023-01-31T07:22:21Z
  date_updated: 2023-01-31T07:22:21Z
  file_id: '12468'
  file_name: qsl.pdf
  file_size: 449027
  relation: main_file
  success: 1
- access_level: open_access
  checksum: f16e2af1e0eb243158ab0f0fe74e7d5a
  content_type: application/pdf
  creator: dernst
  date_created: 2023-06-19T10:28:09Z
  date_updated: 2023-06-19T10:28:09Z
  file_id: '13153'
  file_name: 2023_LNCS_HenzingerT.pdf
  file_size: 1048171
  relation: main_file
  success: 1
file_date_updated: 2023-06-19T10:28:09Z
has_accepted_license: '1'
intvolume: '     13992'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 349-370
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 26th International Conference Foundations of Software Science and Computation
  Structures
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783031308284'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantitative safety and liveness
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 13992
year: '2023'
...
---
_id: '12469'
abstract:
- lang: eng
  text: 'Hosts can carry many viruses in their bodies, but not all of them cause disease.
    We studied ants as a social host to determine both their overall viral repertoire
    and the subset of actively infecting viruses across natural populations of three
    subfamilies: the Argentine ant (Linepithema humile, Dolichoderinae), the invasive
    garden ant (Lasius neglectus, Formicinae) and the red ant (Myrmica rubra, Myrmicinae).
    We used a dual sequencing strategy to reconstruct complete virus genomes by RNA-seq
    and to simultaneously determine the small interfering RNAs (siRNAs) by small RNA
    sequencing (sRNA-seq), which constitute the host antiviral RNAi immune response.
    This approach led to the discovery of 41 novel viruses in ants and revealed a
    host ant-specific RNAi response (21 vs. 22 nt siRNAs) in the different ant species.
    The efficiency of the RNAi response (sRNA/RNA read count ratio) depended on the
    virus and the respective ant species, but not its population. Overall, we found
    the highest virus abundance and diversity per population in Li. humile, followed
    by La. neglectus and M. rubra. Argentine ants also shared a high proportion of
    viruses between populations, whilst overlap was nearly absent in M. rubra. Only
    one of the 59 viruses was found to infect two of the ant species as hosts, revealing
    high host-specificity in active infections. In contrast, six viruses actively
    infected one ant species, but were found as contaminants only in the others. Disentangling
    spillover of disease-causing infection from non-infecting contamination across
    species is providing relevant information for disease ecology and ecosystem management.'
acknowledgement: "We thank D.J. Obbard for sharing the details of the dual RNA-seq/sRNA-seq
  approach, S.\r\nMetzler and R. Ferrigato for the photographs (Figure 1), M. Konrad,
  B. Casillas-Perez, C.D.\r\nPull and X. Espadaler for help with ant collection, and
  the Social Immunity Team at IST\r\nAustria, in particular J. Robb, A. Franschitz,
  E. Naderlinger, E. Dawson and B. Casillas-Perez\r\nfor support and comments on the
  manuscript. The study was funded by the Austrian Science\r\nFund (FWF; M02076-B25
  to MAF) and the Academy of Finland (343022 to LV). "
article_number: '1119002'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Lumi
  full_name: Viljakainen, Lumi
  last_name: Viljakainen
- first_name: Matthias
  full_name: Fürst, Matthias
  id: 393B1196-F248-11E8-B48F-1D18A9856A87
  last_name: Fürst
  orcid: 0000-0002-3712-925X
- first_name: Anna V
  full_name: Grasse, Anna V
  id: 406F989C-F248-11E8-B48F-1D18A9856A87
  last_name: Grasse
- first_name: Jaana
  full_name: Jurvansuu, Jaana
  last_name: Jurvansuu
- first_name: Jinook
  full_name: Oh, Jinook
  id: 403169A4-080F-11EA-9993-BF3F3DDC885E
  last_name: Oh
  orcid: 0000-0001-7425-2372
- first_name: Lassi
  full_name: Tolonen, Lassi
  last_name: Tolonen
- first_name: Thomas
  full_name: Eder, Thomas
  last_name: Eder
- first_name: Thomas
  full_name: Rattei, Thomas
  last_name: Rattei
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
citation:
  ama: Viljakainen L, Fürst M, Grasse AV, et al. Antiviral immune response reveals
    host-specific virus infections in natural ant populations. <i>Frontiers in Microbiology</i>.
    2023;14. doi:<a href="https://doi.org/10.3389/fmicb.2023.1119002">10.3389/fmicb.2023.1119002</a>
  apa: Viljakainen, L., Fürst, M., Grasse, A. V., Jurvansuu, J., Oh, J., Tolonen,
    L., … Cremer, S. (2023). Antiviral immune response reveals host-specific virus
    infections in natural ant populations. <i>Frontiers in Microbiology</i>. Frontiers.
    <a href="https://doi.org/10.3389/fmicb.2023.1119002">https://doi.org/10.3389/fmicb.2023.1119002</a>
  chicago: Viljakainen, Lumi, Matthias Fürst, Anna V Grasse, Jaana Jurvansuu, Jinook
    Oh, Lassi Tolonen, Thomas Eder, Thomas Rattei, and Sylvia Cremer. “Antiviral Immune
    Response Reveals Host-Specific Virus Infections in Natural Ant Populations.” <i>Frontiers
    in Microbiology</i>. Frontiers, 2023. <a href="https://doi.org/10.3389/fmicb.2023.1119002">https://doi.org/10.3389/fmicb.2023.1119002</a>.
  ieee: L. Viljakainen <i>et al.</i>, “Antiviral immune response reveals host-specific
    virus infections in natural ant populations,” <i>Frontiers in Microbiology</i>,
    vol. 14. Frontiers, 2023.
  ista: Viljakainen L, Fürst M, Grasse AV, Jurvansuu J, Oh J, Tolonen L, Eder T, Rattei
    T, Cremer S. 2023. Antiviral immune response reveals host-specific virus infections
    in natural ant populations. Frontiers in Microbiology. 14, 1119002.
  mla: Viljakainen, Lumi, et al. “Antiviral Immune Response Reveals Host-Specific
    Virus Infections in Natural Ant Populations.” <i>Frontiers in Microbiology</i>,
    vol. 14, 1119002, Frontiers, 2023, doi:<a href="https://doi.org/10.3389/fmicb.2023.1119002">10.3389/fmicb.2023.1119002</a>.
  short: L. Viljakainen, M. Fürst, A.V. Grasse, J. Jurvansuu, J. Oh, L. Tolonen, T.
    Eder, T. Rattei, S. Cremer, Frontiers in Microbiology 14 (2023).
corr_author: '1'
date_created: 2023-01-31T08:13:40Z
date_published: 2023-03-16T00:00:00Z
date_updated: 2025-04-23T08:54:27Z
day: '16'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.3389/fmicb.2023.1119002
external_id:
  isi:
  - '000961542100001'
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  - '37007485'
file:
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oa_version: Published Version
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project:
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  call_identifier: FWF
  grant_number: M02076
  name: Viral pathogens and social immunity in ants
publication: Frontiers in Microbiology
publication_identifier:
  eissn:
  - 1664-302X
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Antiviral immune response reveals host-specific virus infections in natural
  ant populations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2023'
...
---
_id: '12478'
abstract:
- lang: eng
  text: In Gram negative bacteria, the multiple antibiotic resistance or mar operon,
    is known to control the expression of multi-drug efflux genes that protect bacteria
    from a wide range of drugs. As many different chemical compounds can induce this
    operon, identifying the parameters that govern the dynamics of its induction is
    crucial to better characterize the processes of tolerance and resistance. Most
    experiments have assumed that the properties of the mar transcriptional network
    can be inferred from population measurements. However, measurements from an asynchronous
    population of cells can mask underlying phenotypic variations of single cells.
    We monitored the activity of the mar promoter in single Escherichia coli cells
    in linear micro-colonies and established that the response to a steady level of
    inducer was most heterogeneous within individual colonies for an intermediate
    value of inducer. Specifically, sub-lineages defined by contiguous daughter-cells
    exhibited similar promoter activity, whereas activity was greatly variable between
    different sub-lineages. Specific sub-trees of uniform promoter activity persisted
    over several generations. Statistical analyses of the lineages suggest that the
    presence of these sub-trees is the signature of an inducible memory of the promoter
    state that is transmitted from mother to daughter cells. This single-cell study
    reveals that the degree of epigenetic inheritance changes as a function of inducer
    concentration, suggesting that phenotypic inheritance may be an inducible phenotype.
acknowledgement: This work was supported by NIH P50 award P50GM081892-02 to the University
  of Chicago, a catalyst grant from the Chicago Biomedical Consortium with support
  from The Searle Funds at The Chicago Community Trust to PC, and a Yen Fellowship
  to CCG. MA was partially supported by PAPIIT-UNAM grant IN-11322.
article_number: '1049255'
article_processing_charge: Yes
article_type: original
author:
- first_name: Calin C
  full_name: Guet, Calin C
  id: 47F8433E-F248-11E8-B48F-1D18A9856A87
  last_name: Guet
  orcid: 0000-0001-6220-2052
- first_name: L
  full_name: Bruneaux, L
  last_name: Bruneaux
- first_name: P
  full_name: Oikonomou, P
  last_name: Oikonomou
- first_name: M
  full_name: Aldana, M
  last_name: Aldana
- first_name: P
  full_name: Cluzel, P
  last_name: Cluzel
citation:
  ama: Guet CC, Bruneaux L, Oikonomou P, Aldana M, Cluzel P. Monitoring lineages of
    growing and dividing bacteria reveals an inducible memory of <i>mar</i> operon
    expression. <i>Frontiers in Microbiology</i>. 2023;14. doi:<a href="https://doi.org/10.3389/fmicb.2023.1049255">10.3389/fmicb.2023.1049255</a>
  apa: Guet, C. C., Bruneaux, L., Oikonomou, P., Aldana, M., &#38; Cluzel, P. (2023).
    Monitoring lineages of growing and dividing bacteria reveals an inducible memory
    of <i>mar</i> operon expression. <i>Frontiers in Microbiology</i>. Frontiers.
    <a href="https://doi.org/10.3389/fmicb.2023.1049255">https://doi.org/10.3389/fmicb.2023.1049255</a>
  chicago: Guet, Calin C, L Bruneaux, P Oikonomou, M Aldana, and P Cluzel. “Monitoring
    Lineages of Growing and Dividing Bacteria Reveals an Inducible Memory of <i>Mar</i>
    Operon Expression.” <i>Frontiers in Microbiology</i>. Frontiers, 2023. <a href="https://doi.org/10.3389/fmicb.2023.1049255">https://doi.org/10.3389/fmicb.2023.1049255</a>.
  ieee: C. C. Guet, L. Bruneaux, P. Oikonomou, M. Aldana, and P. Cluzel, “Monitoring
    lineages of growing and dividing bacteria reveals an inducible memory of <i>mar</i>
    operon expression,” <i>Frontiers in Microbiology</i>, vol. 14. Frontiers, 2023.
  ista: Guet CC, Bruneaux L, Oikonomou P, Aldana M, Cluzel P. 2023. Monitoring lineages
    of growing and dividing bacteria reveals an inducible memory of <i>mar</i> operon
    expression. Frontiers in Microbiology. 14, 1049255.
  mla: Guet, Calin C., et al. “Monitoring Lineages of Growing and Dividing Bacteria
    Reveals an Inducible Memory of <i>Mar</i> Operon Expression.” <i>Frontiers in
    Microbiology</i>, vol. 14, 1049255, Frontiers, 2023, doi:<a href="https://doi.org/10.3389/fmicb.2023.1049255">10.3389/fmicb.2023.1049255</a>.
  short: C.C. Guet, L. Bruneaux, P. Oikonomou, M. Aldana, P. Cluzel, Frontiers in
    Microbiology 14 (2023).
corr_author: '1'
date_created: 2023-02-02T08:13:28Z
date_published: 2023-06-20T00:00:00Z
date_updated: 2024-10-09T21:03:59Z
day: '20'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.3389/fmicb.2023.1049255
external_id:
  isi:
  - '001030002600001'
  pmid:
  - '37485524'
file:
- access_level: open_access
  checksum: 7dd322347512afaa5daf72a0154f2f07
  content_type: application/pdf
  creator: dernst
  date_created: 2023-07-31T07:16:34Z
  date_updated: 2023-07-31T07:16:34Z
  file_id: '13322'
  file_name: 2023_FrontiersMicrobiology_Guet.pdf
  file_size: 6452841
  relation: main_file
  success: 1
file_date_updated: 2023-07-31T07:16:34Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Microbiology
publication_identifier:
  eissn:
  - 1664-302X
publication_status: published
publisher: Frontiers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Monitoring lineages of growing and dividing bacteria reveals an inducible memory
  of <i>mar</i> operon expression
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2023'
...
