--- OA_place: repository _id: '15091' abstract: - lang: eng text: "Motivated by applications in the medical sciences, we study finite chromatic\r\nsets in Euclidean space from a topological perspective. Based on the persistent\r\nhomology for images, kernels and cokernels, we design provably stable\r\nhomological quantifiers that describe the geometric micro- and macro-structure\r\nof how the color classes mingle. These can be efficiently computed using\r\nchromatic variants of Delaunay and alpha complexes, and code that does these\r\ncomputations is provided." article_number: '2212.03128' article_processing_charge: No arxiv: 1 author: - first_name: Sebastiano full_name: Cultrera di Montesano, Sebastiano id: 34D2A09C-F248-11E8-B48F-1D18A9856A87 last_name: Cultrera di Montesano orcid: 0000-0001-6249-0832 - first_name: Ondrej full_name: Draganov, Ondrej id: 2B23F01E-F248-11E8-B48F-1D18A9856A87 last_name: Draganov orcid: 0000-0003-0464-3823 - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 - first_name: Morteza full_name: Saghafian, Morteza id: f86f7148-b140-11ec-9577-95435b8df824 last_name: Saghafian citation: ama: Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. Chromatic alpha complexes. arXiv. doi:10.48550/arXiv.2212.03128 apa: Cultrera di Montesano, S., Draganov, O., Edelsbrunner, H., & Saghafian, M. (n.d.). Chromatic alpha complexes. arXiv. https://doi.org/10.48550/arXiv.2212.03128 chicago: Cultrera di Montesano, Sebastiano, Ondrej Draganov, Herbert Edelsbrunner, and Morteza Saghafian. “Chromatic Alpha Complexes.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2212.03128. ieee: S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, and M. Saghafian, “Chromatic alpha complexes,” arXiv. . ista: Cultrera di Montesano S, Draganov O, Edelsbrunner H, Saghafian M. Chromatic alpha complexes. arXiv, 2212.03128. mla: Cultrera di Montesano, Sebastiano, et al. “Chromatic Alpha Complexes.” ArXiv, 2212.03128, doi:10.48550/arXiv.2212.03128. short: S. Cultrera di Montesano, O. Draganov, H. Edelsbrunner, M. Saghafian, ArXiv (n.d.). corr_author: '1' date_created: 2024-03-08T10:13:59Z date_published: 2024-02-07T00:00:00Z date_updated: 2026-08-12T06:19:48Z day: '07' department: - _id: HeEd doi: 10.48550/arXiv.2212.03128 external_id: arxiv: - '2212.03128' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/2212.03128 month: '02' oa: 1 oa_version: Preprint publication: arXiv publication_status: draft related_material: record: - id: '18979' relation: dissertation_contains status: public - id: '15094' relation: dissertation_contains status: public - id: '20585' relation: later_version status: public status: public title: Chromatic alpha complexes tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: preprint user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 year: '2024' ... --- _id: '17898' abstract: - lang: eng text: 'There is an ever-growing zoo of modern neural network models that can efficiently learn end-to-end control from visual observations. These advanced deep models, ranging from convolutional to Vision Transformers, from small to gigantic networks, have been extensively tested on offline image classification tasks. In this paper, we study these vision models with respect to the open-loop training to closed-loop generalization abilities, i.e., deployment realizes a causal feedback loop that is not present during training. This causality gap typically emerges in robotics applications such as autonomous driving, where a network is trained to imitate the control commands of a human. In this setting, two situations arise: 1) Closed-loop testing in-distribution, where the test environment shares properties with those of offline training data. 2) Closed-loop testing under distribution shifts and out-of-distribution. Contrary to recently reported results, we show that under proper training guidelines, all vision architectures perform indistinguishably well on in-distribution deployment, resolving the causality gap. In situation 2, We observe that scale is the strongest factor in improving closed-loop generalization regardless of the choice of the model architecture. Our results predict the trend that in the future we will see larger and larger models being used in offline-training-online-deployment imitation learning tasks in robotic applications.' acknowledgement: This work was partially supported in parts by the ERC-2020-AdG 101020093. Additionally, it was partially sponsored by the United States Air Force Research Laboratory and the United States Air Force Artificial Intelligence Accelerator and was accomplished under Cooperative Agreement Number FA8750-19-2-1000. The views and conclusions contained in this document are those of the authors and should not be interpreted as representing the official policies, either expressed or implied, of the United States Air Force or the U.S. Government. The U.S. Government is authorized to reproduce and distribute reprints for Government purposes notwithstanding any copyright notation herein. This work was further supported by The Boeing Company and the Office of Naval Research (ONR) Grant N00014-18-1-2830. article_processing_charge: No author: - first_name: Mathias full_name: Lechner, Mathias id: 3DC22916-F248-11E8-B48F-1D18A9856A87 last_name: Lechner - first_name: Ramin full_name: Hasani, Ramin last_name: Hasani - first_name: Alexander full_name: Amini, Alexander last_name: Amini - first_name: Tsun Hsuan full_name: Wang, Tsun Hsuan last_name: Wang - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000-0002-2985-7724 - first_name: Daniela full_name: Rus, Daniela last_name: Rus citation: ama: 'Lechner M, Hasani R, Amini A, Wang TH, Henzinger TA, Rus D. Overparametrization helps offline-to-online generalization of closed-loop control from pixels. In: Proceedings of the 2024 IEEE International Conference on Robotics and Automation. IEEE; 2024:2774-2782. doi:10.1109/ICRA57147.2024.10610284' apa: 'Lechner, M., Hasani, R., Amini, A., Wang, T. H., Henzinger, T. A., & Rus, D. (2024). Overparametrization helps offline-to-online generalization of closed-loop control from pixels. In Proceedings of the 2024 IEEE International Conference on Robotics and Automation (pp. 2774–2782). Yokohama, Japan: IEEE. https://doi.org/10.1109/ICRA57147.2024.10610284' chicago: Lechner, Mathias, Ramin Hasani, Alexander Amini, Tsun Hsuan Wang, Thomas A Henzinger, and Daniela Rus. “Overparametrization Helps Offline-to-Online Generalization of Closed-Loop Control from Pixels.” In Proceedings of the 2024 IEEE International Conference on Robotics and Automation, 2774–82. IEEE, 2024. https://doi.org/10.1109/ICRA57147.2024.10610284. ieee: M. Lechner, R. Hasani, A. Amini, T. H. Wang, T. A. Henzinger, and D. Rus, “Overparametrization helps offline-to-online generalization of closed-loop control from pixels,” in Proceedings of the 2024 IEEE International Conference on Robotics and Automation, Yokohama, Japan, 2024, pp. 2774–2782. ista: 'Lechner M, Hasani R, Amini A, Wang TH, Henzinger TA, Rus D. 2024. Overparametrization helps offline-to-online generalization of closed-loop control from pixels. Proceedings of the 2024 IEEE International Conference on Robotics and Automation. ICRA: International Conference on Robotics and Automation, 2774–2782.' mla: Lechner, Mathias, et al. “Overparametrization Helps Offline-to-Online Generalization of Closed-Loop Control from Pixels.” Proceedings of the 2024 IEEE International Conference on Robotics and Automation, IEEE, 2024, pp. 2774–82, doi:10.1109/ICRA57147.2024.10610284. short: M. Lechner, R. Hasani, A. Amini, T.H. Wang, T.A. Henzinger, D. Rus, in:, Proceedings of the 2024 IEEE International Conference on Robotics and Automation, IEEE, 2024, pp. 2774–2782. conference: end_date: 2024-05-17 location: Yokohama, Japan name: 'ICRA: International Conference on Robotics and Automation' start_date: 2024-05-13 date_created: 2024-09-08T22:01:13Z date_published: 2024-08-08T00:00:00Z date_updated: 2026-08-12T06:35:50Z day: '08' department: - _id: ToHe doi: 10.1109/ICRA57147.2024.10610284 ec_funded: 1 external_id: isi: - '001294576202044' isi: 1 language: - iso: eng month: '08' oa_version: None page: 2774-2782 project: - _id: 62781420-2b32-11ec-9570-8d9b63373d4d call_identifier: H2020 grant_number: '101020093' name: Vigilant Algorithmic Monitoring of Software publication: Proceedings of the 2024 IEEE International Conference on Robotics and Automation publication_identifier: isbn: - '9798350384574' issn: - 1050-4729 publication_status: published publisher: IEEE quality_controlled: '1' scopus_import: '1' status: public title: Overparametrization helps offline-to-online generalization of closed-loop control from pixels type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2024' ... --- _id: '17893' abstract: - lang: eng text: Strong data processing inequalities (SDPI) are an important object of study in Information Theory and have been well studied for f -divergences. Universal upper and lower bounds have been provided along with several applications, connecting them to impossibility (converse) results, concentration of measure, hypercontractivity, and so on. In this paper, we study Renyi divergence and the corresponding SDPI constant whose behavior seems to deviate from that of ordinary <1>-divergences. In particular, one can find examples showing that the universal upper bound relating its SDPI constant to the one of Total Variation does not hold in general. In this work, we prove, however, that the universal lower bound involving the SDPI constant of the Chi-square divergence does indeed hold. Furthermore, we also provide a characterization of the distribution that achieves the supremum when is equal to 2 and consequently compute the SDPI constant for Renyi divergence of the general binary channel. acknowledgement: "The work in this paper was supported in part by the Swiss National Science Foundation under Grant 200364.\r\n" article_processing_charge: No arxiv: 1 author: - first_name: Lifu full_name: Jin, Lifu last_name: Jin - first_name: Amedeo Roberto full_name: Esposito, Amedeo Roberto id: 9583e921-e1ad-11ec-9862-cef099626dc9 last_name: Esposito - first_name: Michael full_name: Gastpar, Michael last_name: Gastpar citation: ama: 'Jin L, Esposito AR, Gastpar M. Properties of the strong data processing constant for Rényi divergence. In: Proceedings of the 2024 IEEE International Symposium on Information Theory. IEEE; 2024:3178-3183. doi:10.1109/ISIT57864.2024.10619367' apa: 'Jin, L., Esposito, A. R., & Gastpar, M. (2024). Properties of the strong data processing constant for Rényi divergence. In Proceedings of the 2024 IEEE International Symposium on Information Theory (pp. 3178–3183). Athens, Greece: IEEE. https://doi.org/10.1109/ISIT57864.2024.10619367' chicago: Jin, Lifu, Amedeo Roberto Esposito, and Michael Gastpar. “Properties of the Strong Data Processing Constant for Rényi Divergence.” In Proceedings of the 2024 IEEE International Symposium on Information Theory, 3178–83. IEEE, 2024. https://doi.org/10.1109/ISIT57864.2024.10619367. ieee: L. Jin, A. R. Esposito, and M. Gastpar, “Properties of the strong data processing constant for Rényi divergence,” in Proceedings of the 2024 IEEE International Symposium on Information Theory, Athens, Greece, 2024, pp. 3178–3183. ista: 'Jin L, Esposito AR, Gastpar M. 2024. Properties of the strong data processing constant for Rényi divergence. Proceedings of the 2024 IEEE International Symposium on Information Theory. ISIT: International Symposium on Information Theory, 3178–3183.' mla: Jin, Lifu, et al. “Properties of the Strong Data Processing Constant for Rényi Divergence.” Proceedings of the 2024 IEEE International Symposium on Information Theory, IEEE, 2024, pp. 3178–83, doi:10.1109/ISIT57864.2024.10619367. short: L. Jin, A.R. Esposito, M. Gastpar, in:, Proceedings of the 2024 IEEE International Symposium on Information Theory, IEEE, 2024, pp. 3178–3183. conference: end_date: 2024-07-12 location: Athens, Greece name: 'ISIT: International Symposium on Information Theory' start_date: 2024-07-07 corr_author: '1' date_created: 2024-09-08T22:01:12Z date_published: 2024-08-19T00:00:00Z date_updated: 2026-08-12T06:38:02Z day: '19' department: - _id: MaMo doi: 10.1109/ISIT57864.2024.10619367 external_id: arxiv: - '2403.10656' isi: - '001304426903055' isi: 1 language: - iso: eng main_file_link: - open_access: '1' url: 'https://doi.org/10.48550/arXiv.2403.10656 ' month: '08' oa: 1 oa_version: Preprint page: 3178-3183 publication: Proceedings of the 2024 IEEE International Symposium on Information Theory publication_identifier: isbn: - '9798350382846' issn: - 2157-8095 publication_status: published publisher: IEEE quality_controlled: '1' scopus_import: '1' status: public title: Properties of the strong data processing constant for Rényi divergence type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2024' ... --- _id: '17895' abstract: - lang: eng text: We propose a concatenated code construction for a class of discrete-alphabet oblivious arbitrarily varying channels (AVCs) with cost constraints. The code has time and space complexity polynomial in the blocklength n . It uses a Reed-Solomon outer code, logarithmic blocklength random inner codes, and stochastic encoding by permuting the codeword before transmission. When the channel satisfies a condition called strong DS-nonsymmetrizability (a modified version of nonsymmetrizability originally due to Dobrushin and Stambler), we show that the code achieves a rate that for a variety of oblivious AVCs (such as classically studied error/erasure channels) match the known capacities. acknowledgement: "The work of M. Langberg and A. D. Sarwate was supported in part by the US NSF under awards CCF-1909451 and CCF1909468. B. K. Dey was supported in part by the Bharti Centre\r\nfor Communication in IIT Bombay. " article_processing_charge: No author: - first_name: B. K. full_name: Dey, B. K. last_name: Dey - first_name: S. full_name: Jaggi, S. last_name: Jaggi - first_name: M. full_name: Langberg, M. last_name: Langberg - first_name: A. D. full_name: Sarwate, A. D. last_name: Sarwate - first_name: Yihan full_name: Zhang, Yihan id: 2ce5da42-b2ea-11eb-bba5-9f264e9d002c last_name: Zhang orcid: 0000-0002-6465-6258 citation: ama: 'Dey BK, Jaggi S, Langberg M, Sarwate AD, Zhang Y. Computationally efficient codes for strongly Dobrushin-Stambler nonsymmetrizable oblivious AVCs. In: Proceedings of the 2024 IEEE International Symposium on Information Theory . IEEE; 2024:1586-1591. doi:10.1109/ISIT57864.2024.10619362' apa: 'Dey, B. K., Jaggi, S., Langberg, M., Sarwate, A. D., & Zhang, Y. (2024). Computationally efficient codes for strongly Dobrushin-Stambler nonsymmetrizable oblivious AVCs. In Proceedings of the 2024 IEEE International Symposium on Information Theory (pp. 1586–1591). Athens, Greece: IEEE. https://doi.org/10.1109/ISIT57864.2024.10619362' chicago: Dey, B. K., S. Jaggi, M. Langberg, A. D. Sarwate, and Yihan Zhang. “Computationally Efficient Codes for Strongly Dobrushin-Stambler Nonsymmetrizable Oblivious AVCs.” In Proceedings of the 2024 IEEE International Symposium on Information Theory , 1586–91. IEEE, 2024. https://doi.org/10.1109/ISIT57864.2024.10619362. ieee: B. K. Dey, S. Jaggi, M. Langberg, A. D. Sarwate, and Y. Zhang, “Computationally efficient codes for strongly Dobrushin-Stambler nonsymmetrizable oblivious AVCs,” in Proceedings of the 2024 IEEE International Symposium on Information Theory , Athens, Greece, 2024, pp. 1586–1591. ista: 'Dey BK, Jaggi S, Langberg M, Sarwate AD, Zhang Y. 2024. Computationally efficient codes for strongly Dobrushin-Stambler nonsymmetrizable oblivious AVCs. Proceedings of the 2024 IEEE International Symposium on Information Theory . ISIT: International Symposium on Information Theory, 1586–1591.' mla: Dey, B. K., et al. “Computationally Efficient Codes for Strongly Dobrushin-Stambler Nonsymmetrizable Oblivious AVCs.” Proceedings of the 2024 IEEE International Symposium on Information Theory , IEEE, 2024, pp. 1586–91, doi:10.1109/ISIT57864.2024.10619362. short: B.K. Dey, S. Jaggi, M. Langberg, A.D. Sarwate, Y. Zhang, in:, Proceedings of the 2024 IEEE International Symposium on Information Theory , IEEE, 2024, pp. 1586–1591. conference: end_date: 2024-07-12 location: Athens, Greece name: 'ISIT: International Symposium on Information Theory' start_date: 2024-07-07 date_created: 2024-09-08T22:01:12Z date_published: 2024-08-19T00:00:00Z date_updated: 2026-08-12T06:37:45Z day: '19' department: - _id: MaMo doi: 10.1109/ISIT57864.2024.10619362 external_id: isi: - '001304426901091' isi: 1 language: - iso: eng month: '08' oa_version: None page: 1586-1591 publication: 'Proceedings of the 2024 IEEE International Symposium on Information Theory ' publication_identifier: isbn: - '9798350382846' issn: - 2157-8095 publication_status: published publisher: IEEE quality_controlled: '1' scopus_import: '1' status: public title: Computationally efficient codes for strongly Dobrushin-Stambler nonsymmetrizable oblivious AVCs type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2024' ... --- _id: '17894' abstract: - lang: eng text: 'Sibson''s α -mutual information has received renewed attention recently in several contexts: concentration of measure under dependence, statistical learning, hypothesis testing, and estimation theory. In this work, we introduce several variational representations of Sibson''s α -mutual information: 1) as a supremum over joint distributions of (a combination of) KL divergences; and 2) as a supremum over functions of opportune expected values. Leveraging them, we produce a variety of novel and known results, including a generalization of transportation-cost inequalities and Fano''s inequality.' acknowledgement: The work in this paper was supported in part by the Swiss National Science Foundation under Grant 200364. article_processing_charge: No author: - first_name: Amedeo Roberto full_name: Esposito, Amedeo Roberto id: 9583e921-e1ad-11ec-9862-cef099626dc9 last_name: Esposito - first_name: Michael full_name: Gastpar, Michael last_name: Gastpar - first_name: Ibrahim full_name: Issa, Ibrahim last_name: Issa citation: ama: 'Esposito AR, Gastpar M, Issa I. Variational characterizations of Sibson’s α-mutual information. In: Proceedings of the 2024 IEEE International Symposium on Information Theory . IEEE; 2024:2110-2115. doi:10.1109/ISIT57864.2024.10619378' apa: 'Esposito, A. R., Gastpar, M., & Issa, I. (2024). Variational characterizations of Sibson’s α-mutual information. In Proceedings of the 2024 IEEE International Symposium on Information Theory (pp. 2110–2115). Athens, Greece: IEEE. https://doi.org/10.1109/ISIT57864.2024.10619378' chicago: Esposito, Amedeo Roberto, Michael Gastpar, and Ibrahim Issa. “Variational Characterizations of Sibson’s α-Mutual Information.” In Proceedings of the 2024 IEEE International Symposium on Information Theory , 2110–15. IEEE, 2024. https://doi.org/10.1109/ISIT57864.2024.10619378. ieee: A. R. Esposito, M. Gastpar, and I. Issa, “Variational characterizations of Sibson’s α-mutual information,” in Proceedings of the 2024 IEEE International Symposium on Information Theory , Athens, Greece, 2024, pp. 2110–2115. ista: 'Esposito AR, Gastpar M, Issa I. 2024. Variational characterizations of Sibson’s α-mutual information. Proceedings of the 2024 IEEE International Symposium on Information Theory . ISIT: International Symposium on Information Theory, 2110–2115.' mla: Esposito, Amedeo Roberto, et al. “Variational Characterizations of Sibson’s α-Mutual Information.” Proceedings of the 2024 IEEE International Symposium on Information Theory , IEEE, 2024, pp. 2110–15, doi:10.1109/ISIT57864.2024.10619378. short: A.R. Esposito, M. Gastpar, I. Issa, in:, Proceedings of the 2024 IEEE International Symposium on Information Theory , IEEE, 2024, pp. 2110–2115. conference: end_date: 2024-07-12 location: Athens, Greece name: 'ISIT: International Symposium on Information Theory' start_date: 2024-07-07 corr_author: '1' date_created: 2024-09-08T22:01:12Z date_published: 2024-08-19T00:00:00Z date_updated: 2026-08-12T06:38:18Z day: '19' department: - _id: MaMo doi: 10.1109/ISIT57864.2024.10619378 external_id: isi: - '001304426902023' isi: 1 language: - iso: eng month: '08' oa_version: None page: 2110-2115 publication: 'Proceedings of the 2024 IEEE International Symposium on Information Theory ' publication_identifier: isbn: - '9798350382846' issn: - 2157-8095 publication_status: published publisher: IEEE quality_controlled: '1' scopus_import: '1' status: public title: Variational characterizations of Sibson's α-mutual information type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2024' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold _id: '18630' abstract: - lang: eng text: 'Markov chains are the de facto finite-state model for stochastic dynamical systems, and Markov decision processes (MDPs) extend Markov chains by incorporating non-deterministic behaviors. Given an MDP and rewards on states, a classical optimization criterion is the maximal expected total reward where the MDP stops after T steps, which can be computed by a simple dynamic programming algorithm. We consider a natural generalization of the problem where the stopping times can be chosen according to a probability distribution, such that the expected stopping time is T, to optimize the expected total reward. Quite surprisingly we establish inter-reducibility of the expected stopping-time problem for Markov chains with the Positivity problem (which is related to the well-known Skolem problem), for which establishing either decidability or undecidability would be a major breakthrough. Given the hardness of the exact problem, we consider the approximate version of the problem: we show that it can be solved in exponential time for Markov chains and in exponential space for MDPs.' acknowledgement: The authors are grateful to the anonymous reviewers of LICS 2021 and of a previous version of this paper for insightful comments that helped improving the presentation. The research presented in this paper was partially supported by the grant ERC CoG 863818 (ForM-SMArt). alternative_title: - LMCS article_processing_charge: Yes article_type: original arxiv: 1 author: - first_name: Krishnendu full_name: Chatterjee, Krishnendu id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87 last_name: Chatterjee orcid: 0000-0002-4561-241X - first_name: Laurent full_name: Doyen, Laurent last_name: Doyen citation: ama: Chatterjee K, Doyen L. Stochastic processes with expected stopping time. Logical Methods in Computer Science. 2024;20(4):11:1-11:34. doi:10.46298/lmcs-20(4:11)2024 apa: Chatterjee, K., & Doyen, L. (2024). Stochastic processes with expected stopping time. Logical Methods in Computer Science. EPI Sciences. https://doi.org/10.46298/lmcs-20(4:11)2024 chicago: Chatterjee, Krishnendu, and Laurent Doyen. “Stochastic Processes with Expected Stopping Time.” Logical Methods in Computer Science. EPI Sciences, 2024. https://doi.org/10.46298/lmcs-20(4:11)2024. ieee: K. Chatterjee and L. Doyen, “Stochastic processes with expected stopping time,” Logical Methods in Computer Science, vol. 20, no. 4. EPI Sciences, p. 11:1-11:34, 2024. ista: Chatterjee K, Doyen L. 2024. Stochastic processes with expected stopping time. Logical Methods in Computer Science. 20(4), 11:1-11:34. mla: Chatterjee, Krishnendu, and Laurent Doyen. “Stochastic Processes with Expected Stopping Time.” Logical Methods in Computer Science, vol. 20, no. 4, EPI Sciences, 2024, p. 11:1-11:34, doi:10.46298/lmcs-20(4:11)2024. short: K. Chatterjee, L. Doyen, Logical Methods in Computer Science 20 (2024) 11:1-11:34. corr_author: '1' date_created: 2024-12-08T23:01:56Z date_published: 2024-11-12T00:00:00Z date_updated: 2026-08-12T06:39:26Z day: '12' ddc: - '000' department: - _id: KrCh doi: 10.46298/lmcs-20(4:11)2024 ec_funded: 1 external_id: arxiv: - '2104.07278' isi: - '001367316400002' file: - access_level: open_access checksum: b3315c74ce18ce0a30ed33d8c9972992 content_type: application/pdf creator: dernst date_created: 2024-12-09T08:38:48Z date_updated: 2024-12-09T08:38:48Z file_id: '18633' file_name: 2024_LMCS_Chatterjee.pdf file_size: 416814 relation: main_file success: 1 file_date_updated: 2024-12-09T08:38:48Z has_accepted_license: '1' intvolume: ' 20' isi: 1 issue: '4' language: - iso: eng month: '11' oa: 1 oa_version: Published Version page: 11:1-11:34 project: - _id: 0599E47C-7A3F-11EA-A408-12923DDC885E call_identifier: H2020 grant_number: '863818' name: 'Formal Methods for Stochastic Models: Algorithms and Applications' publication: Logical Methods in Computer Science publication_identifier: eissn: - 1860-5974 publication_status: published publisher: EPI Sciences quality_controlled: '1' related_material: record: - id: '10004' relation: earlier_version status: public scopus_import: '1' status: public title: Stochastic processes with expected stopping time tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345 volume: 20 year: '2024' ... --- OA_type: closed access _id: '18450' abstract: - lang: eng text: In this work we present the engineering of a portable platform for sensing SERS signals in droplets microfluidics. This system comprised not only the read-out platform but also a design for the microfluidic devices optimized to enhanced the obtained SERS signals. acknowledgement: The authors acknowledge the financial support of the project HfPT – Health from Portugal, with the reference n.° C644937233-00000047, co-funded by Component C5 – Capitalisation and Business Innovation under the Portuguese Resilience and Recovery Plan, through the NextGenerationEU Fund. article_processing_charge: No author: - first_name: Sergio full_name: Quintero, Sergio last_name: Quintero - first_name: Maria full_name: Relvas, Maria last_name: Relvas - first_name: Marta full_name: Aranda, Marta last_name: Aranda - first_name: Fernando full_name: Nodal, Fernando id: 8ad43d5a-1ffe-11ee-8b67-8176f59de781 last_name: Nodal orcid: 0009-0006-4119-4376 - first_name: Lorena full_name: Dieguez, Lorena last_name: Dieguez - first_name: Sara full_name: Abalde-Cela, Sara last_name: Abalde-Cela citation: ama: 'Quintero S, Relvas M, Aranda M, Nodal F, Dieguez L, Abalde-Cela S. Portable Raman platform for SERS droplets microfludics. In: 2024 International Conference on Optical MEMS and Nanophotonics. IEEE; 2024. doi:10.1109/OMN61224.2024.10685279' apa: 'Quintero, S., Relvas, M., Aranda, M., Nodal, F., Dieguez, L., & Abalde-Cela, S. (2024). Portable Raman platform for SERS droplets microfludics. In 2024 International Conference on Optical MEMS and Nanophotonics. San Sebastian, Spain: IEEE. https://doi.org/10.1109/OMN61224.2024.10685279' chicago: Quintero, Sergio, Maria Relvas, Marta Aranda, Fernando Nodal, Lorena Dieguez, and Sara Abalde-Cela. “Portable Raman Platform for SERS Droplets Microfludics.” In 2024 International Conference on Optical MEMS and Nanophotonics. IEEE, 2024. https://doi.org/10.1109/OMN61224.2024.10685279. ieee: S. Quintero, M. Relvas, M. Aranda, F. Nodal, L. Dieguez, and S. Abalde-Cela, “Portable Raman platform for SERS droplets microfludics,” in 2024 International Conference on Optical MEMS and Nanophotonics, San Sebastian, Spain, 2024. ista: 'Quintero S, Relvas M, Aranda M, Nodal F, Dieguez L, Abalde-Cela S. 2024. Portable Raman platform for SERS droplets microfludics. 2024 International Conference on Optical MEMS and Nanophotonics. OMN: Conference on Optical MEMS and Nanophotonics.' mla: Quintero, Sergio, et al. “Portable Raman Platform for SERS Droplets Microfludics.” 2024 International Conference on Optical MEMS and Nanophotonics, IEEE, 2024, doi:10.1109/OMN61224.2024.10685279. short: S. Quintero, M. Relvas, M. Aranda, F. Nodal, L. Dieguez, S. Abalde-Cela, in:, 2024 International Conference on Optical MEMS and Nanophotonics, IEEE, 2024. conference: end_date: 2024-08-01 location: San Sebastian, Spain name: 'OMN: Conference on Optical MEMS and Nanophotonics' start_date: 2024-07-28 date_created: 2024-10-20T22:02:07Z date_published: 2024-09-27T00:00:00Z date_updated: 2026-08-12T06:40:33Z day: '27' department: - _id: GradSch doi: 10.1109/OMN61224.2024.10685279 external_id: isi: - '001327768000060' isi: 1 language: - iso: eng month: '09' oa_version: None publication: 2024 International Conference on Optical MEMS and Nanophotonics publication_identifier: eissn: - 2160-5041 isbn: - '9798350384925' issn: - 2160-5033 publication_status: published publisher: IEEE quality_controlled: '1' scopus_import: '1' status: public title: Portable Raman platform for SERS droplets microfludics type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2024' ... --- OA_place: publisher OA_type: hybrid _id: '18923' abstract: - lang: eng text: 'Combinatorial optimization is a challenging problem applicable in a wide range of fields from logistics to finance. Recently, quantum computing has been used to attempt to solve these problems using a range of algorithms, including parameterized quantum circuits, adiabatic protocols, and quantum annealing. These solutions typically have several challenges: 1) there is little to no performance gain over classical methods; 2) not all constraints and objectives may be efficiently encoded in the quantum ansatz; and 3) the solution domain of the objective function may not be the same as the bit strings of measurement outcomes. This work presents “nonnative hybrid algorithms”: a framework to overcome these challenges by integrating quantum and classical resources with a hybrid approach. By designing nonnative quantum variational anosatzes that inherit some but not all problem structure, measurement outcomes from the quantum computer can act as a resource to be used by classical routines to indirectly compute optimal solutions, partially overcoming the challenges of contemporary quantum optimization approaches. These methods are demonstrated using a publicly available neutral-atom quantum computer on two simple problems of Max k-Cut and maximum independent set. We find improvements in solution quality when comparing the hybrid algorithm to its “no quantum” version, a demonstration of a “comparative advantage.”' acknowledgement: "The authors would like to thank Alexander Keesling, Maddie Cain, Nate Gemelke, and Phillip Weinberg for helpful discussions and Danylo Lykov who had early contributions to this work.\r\n10.13039/100000185-Defense Advanced Research Projects Agency Noisy Intermediate-Scale Quantum Devices (Grant Number: W911NF2010021), DARPA Small Business Technology Transfer program (Grant Number: 140D0422C0035)." article_processing_charge: Yes (in subscription journal) article_type: original author: - first_name: Jonathan full_name: Wurtz, Jonathan last_name: Wurtz - first_name: Stefan full_name: Sack, Stefan id: dd622248-f6e0-11ea-865d-ce382a1c81a5 last_name: Sack orcid: 0000-0001-5400-8508 - first_name: Sheng-Tao full_name: Wang, Sheng-Tao last_name: Wang citation: ama: Wurtz J, Sack S, Wang S-T. Solving nonnative combinatorial optimization problems using hybrid quantum–classical algorithms. IEEE Transactions on Quantum Engineering. 2024;5:1-14. doi:10.1109/tqe.2024.3443660 apa: Wurtz, J., Sack, S., & Wang, S.-T. (2024). Solving nonnative combinatorial optimization problems using hybrid quantum–classical algorithms. IEEE Transactions on Quantum Engineering. IEEE. https://doi.org/10.1109/tqe.2024.3443660 chicago: Wurtz, Jonathan, Stefan Sack, and Sheng-Tao Wang. “Solving Nonnative Combinatorial Optimization Problems Using Hybrid Quantum–Classical Algorithms.” IEEE Transactions on Quantum Engineering. IEEE, 2024. https://doi.org/10.1109/tqe.2024.3443660. ieee: J. Wurtz, S. Sack, and S.-T. Wang, “Solving nonnative combinatorial optimization problems using hybrid quantum–classical algorithms,” IEEE Transactions on Quantum Engineering, vol. 5. IEEE, pp. 1–14, 2024. ista: Wurtz J, Sack S, Wang S-T. 2024. Solving nonnative combinatorial optimization problems using hybrid quantum–classical algorithms. IEEE Transactions on Quantum Engineering. 5, 1–14. mla: Wurtz, Jonathan, et al. “Solving Nonnative Combinatorial Optimization Problems Using Hybrid Quantum–Classical Algorithms.” IEEE Transactions on Quantum Engineering, vol. 5, IEEE, 2024, pp. 1–14, doi:10.1109/tqe.2024.3443660. short: J. Wurtz, S. Sack, S.-T. Wang, IEEE Transactions on Quantum Engineering 5 (2024) 1–14. das_tickbox: '1' date_created: 2025-01-27T15:00:44Z date_published: 2024-08-14T00:00:00Z date_updated: 2026-08-12T06:42:26Z day: '14' ddc: - '530' department: - _id: MaSe doi: 10.1109/tqe.2024.3443660 file: - access_level: open_access checksum: 19b84e35cba05bde72bfe7e0b54c3e6c content_type: application/pdf creator: dernst date_created: 2025-01-27T15:03:09Z date_updated: 2025-01-27T15:03:09Z file_id: '18924' file_name: 2024_IEEEQuantumComputing_Wurtz.pdf file_size: 1753095 relation: main_file success: 1 file_date_updated: 2025-01-27T15:03:09Z has_accepted_license: '1' intvolume: ' 5' language: - iso: eng month: '08' oa: 1 oa_version: Published Version page: 1-14 publication: IEEE Transactions on Quantum Engineering publication_identifier: issn: - 2689-1808 publication_status: published publisher: IEEE quality_controlled: '1' scopus_import: '1' status: public title: Solving nonnative combinatorial optimization problems using hybrid quantum–classical algorithms tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 5 year: '2024' ... --- OA_place: publisher OA_type: hybrid _id: '22563' abstract: - lang: eng text: The ascent of water from the soil to the leaves of vascular plants, described by the study of plant hydraulics, regulates ecosystem responses to environmental forcing and recovery from stress periods. Several approaches to model plant hydraulics have been proposed. In this study, we introduce four different versions of plant hydraulics representations in the terrestrial biosphere model T&C to understand the significance of plant hydraulics to ecosystem functioning. We tested representations of plant hydraulics, investigating plant water capacitance, and long-term xylem damages following drought. The four models we tested were a combination of representations including or neglecting capacitance and including or neglecting xylem damage legacies. Using the models at six case studies spanning semiarid to tropical ecosystems, we quantify how plant xylem flow, plant water storage and long-term xylem damage can modulate overall water and carbon dynamics across multiple time scales. We show that as drought develops, models with plant hydraulics predict a slower onset of plant water stress, and a diurnal variability of water and carbon fluxes closer to observations. Plant water storage was found to be particularly important for the diurnal dynamics of water and carbon fluxes, with models that include plant water capacitance yielding better results. Models including permanent damage to conducting plant tissues show an additional significant drought legacy effect, limiting plant productivity during the recovery phase following major droughts. However, when considering ecosystem responses to the observed climate variability, plant hydraulic modules alone cannot significantly improve the overall model performance, even though they reproduce more realistic water and carbon dynamics. This opens new avenues for model development, explicitly linking plant hydraulics with additional ecosystem processes, such as plant phenology and improved carbon allocation algorithms. article_number: e17022 article_processing_charge: No article_type: original author: - first_name: Athanasios full_name: Paschalis, Athanasios last_name: Paschalis - first_name: Martin G. full_name: De Kauwe, Martin G. last_name: De Kauwe - first_name: Manon full_name: Sabot, Manon last_name: Sabot - first_name: Simone full_name: Fatichi, Simone id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6 last_name: Fatichi citation: ama: Paschalis A, De Kauwe MG, Sabot M, Fatichi S. When do plant hydraulics matter in terrestrial biosphere modelling? Global Change Biology. 2024;30(1). doi:10.1111/gcb.17022 apa: Paschalis, A., De Kauwe, M. G., Sabot, M., & Fatichi, S. (2024). When do plant hydraulics matter in terrestrial biosphere modelling? Global Change Biology. Wiley. https://doi.org/10.1111/gcb.17022 chicago: Paschalis, Athanasios, Martin G. De Kauwe, Manon Sabot, and Simone Fatichi. “When Do Plant Hydraulics Matter in Terrestrial Biosphere Modelling?” Global Change Biology. Wiley, 2024. https://doi.org/10.1111/gcb.17022. ieee: A. Paschalis, M. G. De Kauwe, M. Sabot, and S. Fatichi, “When do plant hydraulics matter in terrestrial biosphere modelling?,” Global Change Biology, vol. 30, no. 1. Wiley, 2024. ista: Paschalis A, De Kauwe MG, Sabot M, Fatichi S. 2024. When do plant hydraulics matter in terrestrial biosphere modelling? Global Change Biology. 30(1), e17022. mla: Paschalis, Athanasios, et al. “When Do Plant Hydraulics Matter in Terrestrial Biosphere Modelling?” Global Change Biology, vol. 30, no. 1, e17022, Wiley, 2024, doi:10.1111/gcb.17022. short: A. Paschalis, M.G. De Kauwe, M. Sabot, S. Fatichi, Global Change Biology 30 (2024). das_tickbox: '1' date_created: 2026-07-27T12:30:24Z date_published: 2024-01-01T00:00:00Z date_updated: 2026-08-12T08:44:53Z day: '01' doi: 10.1111/gcb.17022 extern: '1' external_id: pmid: - '37962234 ' intvolume: ' 30' issue: '1' keyword: - Ecosystem recovery - Ecosystem responses - Plant hydraulics - Terrestrial biosphere model - Water stress language: - iso: eng main_file_link: - open_access: '1' url: ' https://doi.org/10.1111/gcb.17022' month: '01' oa: 1 oa_version: Published Version pmid: 1 publication: Global Change Biology publication_identifier: eissn: - 1365-2486 issn: - 1354-1013 publication_status: published publisher: Wiley quality_controlled: '1' scopus_import: '1' status: public title: When do plant hydraulics matter in terrestrial biosphere modelling? tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd volume: 30 year: '2024' ... --- OA_place: publisher OA_type: hybrid _id: '22583' abstract: - lang: eng text: Accurately predicting weather and climate in cities is critical for safeguarding human health and strengthening urban resilience. Multimodel evaluations can lead to model improvements; however, there have been no major intercomparisons of urban-focussed land surface models in over a decade. Here, in Phase 1 of the Urban-PLUMBER project, we evaluate the ability of 30 land surface models to simulate surface energy fluxes critical to atmospheric meteorological and air quality simulations. We establish minimum and upper performance expectations for participating models using simple information-limited models as benchmarks. Compared with the last major model intercomparison at the same site, we find broad improvement in the current cohort's predictions of short-wave radiation, sensible and latent heat fluxes, but little or no improvement in long-wave radiation and momentum fluxes. Models with a simple urban representation (e.g., ‘slab’ schemes) generally perform well, particularly when combined with sophisticated hydrological/vegetation models. Some mid-complexity models (e.g., ‘canyon’ schemes) also perform well, indicating efforts to integrate vegetation and hydrology processes have paid dividends. The most complex models that resolve three-dimensional interactions between buildings in general did not perform as well as other categories. However, these models also tended to have the simplest representations of hydrology and vegetation. Models without any urban representation (i.e., vegetation-only land surface models) performed poorly for latent heat fluxes, and reasonably for other energy fluxes at this suburban site. Our analysis identified widespread human errors in initial submissions that substantially affected model performances. Although significant efforts are applied to correct these errors, we conclude that human factors are likely to influence results in this (or any) model intercomparison, particularly where participating scientists have varying experience and first languages. These initial results are for one suburban site, and future phases of Urban-PLUMBER will evaluate models across 20 sites in different urban and regional climate zones. article_processing_charge: No article_type: original author: - first_name: Mathew J. full_name: Lipson, Mathew J. last_name: Lipson - first_name: Sue full_name: Grimmond, Sue last_name: Grimmond - first_name: Martin full_name: Best, Martin last_name: Best - first_name: Gab full_name: Abramowitz, Gab last_name: Abramowitz - first_name: Andrew full_name: Coutts, Andrew last_name: Coutts - first_name: Nigel full_name: Tapper, Nigel last_name: Tapper - first_name: Jong‐Jin full_name: Baik, Jong‐Jin last_name: Baik - first_name: Meiring full_name: Beyers, Meiring last_name: Beyers - first_name: Lewis full_name: Blunn, Lewis last_name: Blunn - first_name: Souhail full_name: Boussetta, Souhail last_name: Boussetta - first_name: Elie full_name: Bou‐Zeid, Elie last_name: Bou‐Zeid - first_name: Martin G. full_name: De Kauwe, Martin G. last_name: De Kauwe - first_name: Cécile full_name: de Munck, Cécile last_name: de Munck - first_name: Matthias full_name: Demuzere, Matthias last_name: Demuzere - first_name: Simone full_name: Fatichi, Simone id: cf8e546b-a9b0-11f0-a43b-aa89ed1b56d6 last_name: Fatichi - first_name: Krzysztof full_name: Fortuniak, Krzysztof last_name: Fortuniak - first_name: Beom‐Soon full_name: Han, Beom‐Soon last_name: Han - first_name: Margaret A. full_name: Hendry, Margaret A. last_name: Hendry - first_name: Yukihiro full_name: Kikegawa, Yukihiro last_name: Kikegawa - first_name: Hiroaki full_name: Kondo, Hiroaki last_name: Kondo - first_name: Doo‐Il full_name: Lee, Doo‐Il last_name: Lee - first_name: Sang‐Hyun full_name: Lee, Sang‐Hyun last_name: Lee - first_name: Aude full_name: Lemonsu, Aude last_name: Lemonsu - first_name: Tiago full_name: Machado, Tiago last_name: Machado - first_name: Gabriele full_name: Manoli, Gabriele last_name: Manoli - first_name: Alberto full_name: Martilli, Alberto last_name: Martilli - first_name: Valéry full_name: Masson, Valéry last_name: Masson - first_name: Joe full_name: McNorton, Joe last_name: McNorton - first_name: Naika full_name: Meili, Naika last_name: Meili - first_name: David full_name: Meyer, David last_name: Meyer - first_name: Kerry A. full_name: Nice, Kerry A. last_name: Nice - first_name: Keith W. full_name: Oleson, Keith W. last_name: Oleson - first_name: Seung‐Bu full_name: Park, Seung‐Bu last_name: Park - first_name: Michael full_name: Roth, Michael last_name: Roth - first_name: Robert full_name: Schoetter, Robert last_name: Schoetter - first_name: Andrés full_name: Simón‐Moral, Andrés last_name: Simón‐Moral - first_name: Gert‐Jan full_name: Steeneveld, Gert‐Jan last_name: Steeneveld - first_name: Ting full_name: Sun, Ting last_name: Sun - first_name: Yuya full_name: Takane, Yuya last_name: Takane - first_name: Marcus full_name: Thatcher, Marcus last_name: Thatcher - first_name: Aristofanis full_name: Tsiringakis, Aristofanis last_name: Tsiringakis - first_name: Mikhail full_name: Varentsov, Mikhail last_name: Varentsov - first_name: Chenghao full_name: Wang, Chenghao last_name: Wang - first_name: Zhi‐Hua full_name: Wang, Zhi‐Hua last_name: Wang - first_name: Andy J. full_name: Pitman, Andy J. last_name: Pitman citation: ama: 'Lipson MJ, Grimmond S, Best M, et al. Evaluation of 30 urban land surface models in the Urban-PLUMBER project: Phase 1 results. Quarterly Journal of the Royal Meteorological Society. 2024;150(758):126-169. doi:10.1002/qj.4589' apa: 'Lipson, M. J., Grimmond, S., Best, M., Abramowitz, G., Coutts, A., Tapper, N., … Pitman, A. J. (2024). Evaluation of 30 urban land surface models in the Urban-PLUMBER project: Phase 1 results. Quarterly Journal of the Royal Meteorological Society. Wiley. https://doi.org/10.1002/qj.4589' chicago: 'Lipson, Mathew J., Sue Grimmond, Martin Best, Gab Abramowitz, Andrew Coutts, Nigel Tapper, Jong‐Jin Baik, et al. “Evaluation of 30 Urban Land Surface Models in the Urban-PLUMBER Project: Phase 1 Results.” Quarterly Journal of the Royal Meteorological Society. Wiley, 2024. https://doi.org/10.1002/qj.4589.' ieee: 'M. J. Lipson et al., “Evaluation of 30 urban land surface models in the Urban-PLUMBER project: Phase 1 results,” Quarterly Journal of the Royal Meteorological Society, vol. 150, no. 758. Wiley, pp. 126–169, 2024.' ista: 'Lipson MJ, Grimmond S, Best M, Abramowitz G, Coutts A, Tapper N, Baik J, Beyers M, Blunn L, Boussetta S, Bou‐Zeid E, De Kauwe MG, de Munck C, Demuzere M, Fatichi S, Fortuniak K, Han B, Hendry MA, Kikegawa Y, Kondo H, Lee D, Lee S, Lemonsu A, Machado T, Manoli G, Martilli A, Masson V, McNorton J, Meili N, Meyer D, Nice KA, Oleson KW, Park S, Roth M, Schoetter R, Simón‐Moral A, Steeneveld G, Sun T, Takane Y, Thatcher M, Tsiringakis A, Varentsov M, Wang C, Wang Z, Pitman AJ. 2024. Evaluation of 30 urban land surface models in the Urban-PLUMBER project: Phase 1 results. Quarterly Journal of the Royal Meteorological Society. 150(758), 126–169.' mla: 'Lipson, Mathew J., et al. “Evaluation of 30 Urban Land Surface Models in the Urban-PLUMBER Project: Phase 1 Results.” Quarterly Journal of the Royal Meteorological Society, vol. 150, no. 758, Wiley, 2024, pp. 126–69, doi:10.1002/qj.4589.' short: M.J. Lipson, S. Grimmond, M. Best, G. Abramowitz, A. Coutts, N. Tapper, J. Baik, M. Beyers, L. Blunn, S. Boussetta, E. Bou‐Zeid, M.G. De Kauwe, C. de Munck, M. Demuzere, S. Fatichi, K. Fortuniak, B. Han, M.A. Hendry, Y. Kikegawa, H. Kondo, D. Lee, S. Lee, A. Lemonsu, T. Machado, G. Manoli, A. Martilli, V. Masson, J. McNorton, N. Meili, D. Meyer, K.A. Nice, K.W. Oleson, S. Park, M. Roth, R. Schoetter, A. Simón‐Moral, G. Steeneveld, T. Sun, Y. Takane, M. Thatcher, A. Tsiringakis, M. Varentsov, C. Wang, Z. Wang, A.J. Pitman, Quarterly Journal of the Royal Meteorological Society 150 (2024) 126–169. das_tickbox: '1' date_created: 2026-07-27T12:30:25Z date_published: 2024-01-01T00:00:00Z date_updated: 2026-08-12T08:53:18Z day: '01' doi: 10.1002/qj.4589 extern: '1' intvolume: ' 150' issue: '758' keyword: - Benchmark - Energy balance - Intercomparison - Model evaluation - Urban climate - Urban meteorology language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1002/qj.4589 month: '01' oa: 1 oa_version: Published Version page: 126-169 publication: Quarterly Journal of the Royal Meteorological Society publication_identifier: eissn: - 1477-870X issn: - 0035-9009 publication_status: published publisher: Wiley quality_controlled: '1' scopus_import: '1' status: public title: 'Evaluation of 30 urban land surface models in the Urban-PLUMBER project: Phase 1 results' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd volume: 150 year: '2024' ... --- _id: '17481' abstract: - lang: eng text: "Phase-field models such as the Allen–Cahn equation may give rise to the formation and evolution of geometric shapes, a phenomenon that may be analyzed rigorously in suitable scaling regimes. In its sharp-interface limit, the vectorial Allen–Cahn equation with a potential with N≥3 distinct minima has been conjectured to describe the evolution of branched interfaces by multiphase mean curvature flow. In the present work, we give a rigorous proof for this statement in two and three ambient dimensions and for a suitable class of potentials: as long as a strong solution to multiphase mean curvature flow exists, solutions to the vectorial Allen–Cahn equation with well-prepared initial data converge towards multiphase mean curvature flow in the limit of vanishing interface width parameter ε↘0. We even establish the rate of convergence O(ε \r\n1/2\r\n ). Our approach is based on the gradient-flow structure of the Allen–Cahn equation and its limiting motion: building on the recent concept of “gradient-flow calibrations” for multiphase mean curvature flow, we introduce a notion of relative entropy for the vectorial Allen–Cahn equation with multi-well potential. This enables us to overcome the limitations of other approaches, e.g. avoiding the need for a stability analysis of the Allen–Cahn operator or additional convergence hypotheses for the energy at positive times." acknowledgement: "The authors thank Sebastian Hensel for useful and helpful commentson the first draft of this work.\r\nThis project has received funding from the European Research Council (ERC)\r\nunder the European Union’s Horizon 2020 research and innovation programme (grant\r\nagreement no. 948819." article_processing_charge: Yes article_type: original author: - first_name: Julian L full_name: Fischer, Julian L id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87 last_name: Fischer orcid: 0000-0002-0479-558X - first_name: Alice full_name: Marveggio, Alice id: 25647992-AA84-11E9-9D75-8427E6697425 last_name: Marveggio citation: ama: Fischer JL, Marveggio A. Quantitative convergence of the vectorial Allen–Cahn equation towards multiphase mean curvature flow. Annales de l’Institut Henri Poincaré C. 2024;41(5):1117-1178. doi:10.4171/AIHPC/109 apa: Fischer, J. L., & Marveggio, A. (2024). Quantitative convergence of the vectorial Allen–Cahn equation towards multiphase mean curvature flow. Annales de l’Institut Henri Poincaré C. EMS Press. https://doi.org/10.4171/AIHPC/109 chicago: Fischer, Julian L, and Alice Marveggio. “Quantitative Convergence of the Vectorial Allen–Cahn Equation towards Multiphase Mean Curvature Flow.” Annales de l’Institut Henri Poincaré C. EMS Press, 2024. https://doi.org/10.4171/AIHPC/109. ieee: J. L. Fischer and A. Marveggio, “Quantitative convergence of the vectorial Allen–Cahn equation towards multiphase mean curvature flow,” Annales de l’Institut Henri Poincaré C, vol. 41, no. 5. EMS Press, pp. 1117–1178, 2024. ista: Fischer JL, Marveggio A. 2024. Quantitative convergence of the vectorial Allen–Cahn equation towards multiphase mean curvature flow. Annales de l’Institut Henri Poincaré C. 41(5), 1117–1178. mla: Fischer, Julian L., and Alice Marveggio. “Quantitative Convergence of the Vectorial Allen–Cahn Equation towards Multiphase Mean Curvature Flow.” Annales de l’Institut Henri Poincaré C, vol. 41, no. 5, EMS Press, 2024, pp. 1117–78, doi:10.4171/AIHPC/109. short: J.L. Fischer, A. Marveggio, Annales de l’Institut Henri Poincaré C 41 (2024) 1117–1178. corr_author: '1' date_created: 2024-09-01T22:01:09Z date_published: 2024-01-24T00:00:00Z date_updated: 2026-08-12T09:15:49Z day: '24' ddc: - '510' department: - _id: JuFi doi: 10.4171/AIHPC/109 ec_funded: 1 external_id: isi: - '001293853900003' file: - access_level: open_access checksum: b5ad02d9abd5b4701269cd1ad0a1cc8f content_type: application/pdf creator: dernst date_created: 2024-09-09T07:46:42Z date_updated: 2024-09-09T07:46:42Z file_id: '17923' file_name: 2024_AnnInstHPoincare_Fischer.pdf file_size: 1348896 relation: main_file success: 1 file_date_updated: 2024-09-09T07:46:42Z has_accepted_license: '1' intvolume: ' 41' isi: 1 issue: '5' language: - iso: eng month: '01' oa: 1 oa_version: Published Version page: 1117-1178 project: - _id: 0aa76401-070f-11eb-9043-b5bb049fa26d call_identifier: H2020 grant_number: '948819' name: Bridging Scales in Random Materials publication: Annales de l'Institut Henri Poincaré C publication_identifier: eissn: - 1873-1430 issn: - 0294-1449 publication_status: published publisher: EMS Press quality_controlled: '1' related_material: record: - id: '14597' relation: earlier_version status: public scopus_import: '1' status: public title: Quantitative convergence of the vectorial Allen–Cahn equation towards multiphase mean curvature flow tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 41 year: '2024' ... --- _id: '15048' abstract: - lang: eng text: Embryogenesis results from the coordinated activities of different signaling pathways controlling cell fate specification and morphogenesis. In vertebrate gastrulation, both Nodal and BMP signaling play key roles in germ layer specification and morphogenesis, yet their interplay to coordinate embryo patterning with morphogenesis is still insufficiently understood. Here, we took a reductionist approach using zebrafish embryonic explants to study the coordination of Nodal and BMP signaling for embryo patterning and morphogenesis. We show that Nodal signaling triggers explant elongation by inducing mesendodermal progenitors but also suppressing BMP signaling activity at the site of mesendoderm induction. Consistent with this, ectopic BMP signaling in the mesendoderm blocks cell alignment and oriented mesendoderm intercalations, key processes during explant elongation. Translating these ex vivo observations to the intact embryo showed that, similar to explants, Nodal signaling suppresses the effect of BMP signaling on cell intercalations in the dorsal domain, thus allowing robust embryonic axis elongation. These findings suggest a dual function of Nodal signaling in embryonic axis elongation by both inducing mesendoderm and suppressing BMP effects in the dorsal portion of the mesendoderm. acknowledged_ssus: - _id: Bio - _id: LifeSc acknowledgement: "We thank Patrick Müller for sharing the chordintt250 mutant zebrafish line as well as the plasmid for chrd-GFP, Katherine Rogers for sharing the bmp2b plasmid and Andrea Pauli for sharing the draculin plasmid. Diana Pinheiro generated the MZlefty1,2;Tg(sebox::EGFP) line. We are grateful to Patrick Müller, Diana Pinheiro and Katherine Rogers and members of the Heisenberg lab for discussions, technical advice and feedback on the manuscript. We also thank Anna Kicheva and Edouard Hannezo for discussions. We thank the Imaging and Optics Facility as well as the Life Science facility at IST Austria for support with microscopy and fish maintenance.\r\nThis work was supported by a European Research Council Advanced Grant\r\n(MECSPEC 742573 to C.-P.H.). A.S. is a recipient of a DOC Fellowship of the Austrian\r\nAcademy of Sciences at IST Austria. Open Access funding provided by Institute of\r\nScience and Technology Austria. " article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Alexandra full_name: Schauer, Alexandra id: 30A536BA-F248-11E8-B48F-1D18A9856A87 last_name: Schauer orcid: 0000-0001-7659-9142 - first_name: Kornelija full_name: Pranjic-Ferscha, Kornelija id: 4362B3C2-F248-11E8-B48F-1D18A9856A87 last_name: Pranjic-Ferscha - first_name: Robert full_name: Hauschild, Robert id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87 last_name: Hauschild orcid: 0000-0001-9843-3522 - first_name: Carl-Philipp J full_name: Heisenberg, Carl-Philipp J id: 39427864-F248-11E8-B48F-1D18A9856A87 last_name: Heisenberg orcid: 0000-0002-0912-4566 citation: ama: Schauer A, Pranjic-Ferscha K, Hauschild R, Heisenberg C-PJ. Robust axis elongation by Nodal-dependent restriction of BMP signaling. Development. 2024;151(4):1-18. doi:10.1242/dev.202316 apa: Schauer, A., Pranjic-Ferscha, K., Hauschild, R., & Heisenberg, C.-P. J. (2024). Robust axis elongation by Nodal-dependent restriction of BMP signaling. Development. Company of Biologists. https://doi.org/10.1242/dev.202316 chicago: Schauer, Alexandra, Kornelija Pranjic-Ferscha, Robert Hauschild, and Carl-Philipp J Heisenberg. “Robust Axis Elongation by Nodal-Dependent Restriction of BMP Signaling.” Development. Company of Biologists, 2024. https://doi.org/10.1242/dev.202316. ieee: A. Schauer, K. Pranjic-Ferscha, R. Hauschild, and C.-P. J. Heisenberg, “Robust axis elongation by Nodal-dependent restriction of BMP signaling,” Development, vol. 151, no. 4. Company of Biologists, pp. 1–18, 2024. ista: Schauer A, Pranjic-Ferscha K, Hauschild R, Heisenberg C-PJ. 2024. Robust axis elongation by Nodal-dependent restriction of BMP signaling. Development. 151(4), 1–18. mla: Schauer, Alexandra, et al. “Robust Axis Elongation by Nodal-Dependent Restriction of BMP Signaling.” Development, vol. 151, no. 4, Company of Biologists, 2024, pp. 1–18, doi:10.1242/dev.202316. short: A. Schauer, K. Pranjic-Ferscha, R. Hauschild, C.-P.J. Heisenberg, Development 151 (2024) 1–18. corr_author: '1' date_created: 2024-03-03T23:00:50Z date_published: 2024-02-01T00:00:00Z date_updated: 2026-08-12T10:00:14Z day: '01' ddc: - '570' department: - _id: CaHe - _id: Bio doi: 10.1242/dev.202316 ec_funded: 1 external_id: isi: - '001170580200001' pmid: - '38372390' file: - access_level: open_access checksum: 6961ea10012bf0d266681f9628bb8f13 content_type: application/pdf creator: dernst date_created: 2024-03-04T07:24:43Z date_updated: 2024-03-04T07:24:43Z file_id: '15050' file_name: 2024_Development_Schauer.pdf file_size: 14839986 relation: main_file success: 1 file_date_updated: 2024-03-04T07:24:43Z has_accepted_license: '1' intvolume: ' 151' isi: 1 issue: '4' language: - iso: eng month: '02' oa: 1 oa_version: Published Version page: 1-18 pmid: 1 project: - _id: 260F1432-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '742573' name: Interaction and feedback between cell mechanics and fate specification in vertebrate gastrulation - _id: 26B1E39C-B435-11E9-9278-68D0E5697425 grant_number: '25239' name: 'Mesendoderm specification in zebrafish: The role of extraembryonic tissues' publication: Development publication_identifier: eissn: - 1477-9129 issn: - 0950-1991 publication_status: published publisher: Company of Biologists quality_controlled: '1' related_material: record: - id: '14926' relation: research_data status: public scopus_import: '1' status: public title: Robust axis elongation by Nodal-dependent restriction of BMP signaling tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 151 year: '2024' ... --- _id: '17458' abstract: - lang: eng text: Changes in gene dosage can have tremendous evolutionary potential (e.g. whole-genome duplications), but without compensatory mechanisms, they can also lead to gene dysregulation and pathologies. Sex chromosomes are a paradigmatic example of naturally occurring gene dosage differences and their compensation. In species with chromosome-based sex determination, individuals within the same population necessarily show ‘natural’ differences in gene dosage for the sex chromosomes. In this Review, we focus on the mammalian X chromosome and discuss recent new insights into the dosage-compensation mechanisms that evolved along with the emergence of sex chromosomes, namely X-inactivation and X-upregulation. We also discuss the evolution of the genetic loci and molecular players involved, as well as the regulatory diversity and potentially different requirements for dosage compensation across mammalian species. acknowledgement: We thank Estelle Nicolas for critical feedback on the manuscript and Ikuhiro Okamoto for critical feedback on the figures. We apologise to authors whose work we overlooked or did not discuss or cite due to limits in the number of references. We thank the anonymous reviewers for pointing us to additional literature and for their constructive feedback. Figures were prepared with BioRender.com. D.C. is supported by a fellowship from Ligue Contre le Cancer (LNCC_TAJT25850) and R.G. holds a tenured research position from the Centre National de la Recherche Scientifique (France). Research in the Galupa lab is supported by a grant from the Fondation pour la Recherche Médicale (AJE202305017142). Open Access funding provided by Fondation pour la Recherche Médicale. Deposited in PMC for immediate release. article_number: dev202891 article_processing_charge: Yes (in subscription journal) article_type: original author: - first_name: Daniela full_name: Cecalev, Daniela last_name: Cecalev - first_name: Beatriz full_name: Vicoso, Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 - first_name: Rafael full_name: Galupa, Rafael last_name: Galupa citation: ama: Cecalev D, Vicoso B, Galupa R. Compensation of gene dosage on the mammalian X. Development. 2024;151(15). doi:10.1242/dev.202891 apa: Cecalev, D., Vicoso, B., & Galupa, R. (2024). Compensation of gene dosage on the mammalian X. Development. Company of Biologists. https://doi.org/10.1242/dev.202891 chicago: Cecalev, Daniela, Beatriz Vicoso, and Rafael Galupa. “Compensation of Gene Dosage on the Mammalian X.” Development. Company of Biologists, 2024. https://doi.org/10.1242/dev.202891. ieee: D. Cecalev, B. Vicoso, and R. Galupa, “Compensation of gene dosage on the mammalian X,” Development, vol. 151, no. 15. Company of Biologists, 2024. ista: Cecalev D, Vicoso B, Galupa R. 2024. Compensation of gene dosage on the mammalian X. Development. 151(15), dev202891. mla: Cecalev, Daniela, et al. “Compensation of Gene Dosage on the Mammalian X.” Development, vol. 151, no. 15, dev202891, Company of Biologists, 2024, doi:10.1242/dev.202891. short: D. Cecalev, B. Vicoso, R. Galupa, Development 151 (2024). date_created: 2024-08-25T22:01:07Z date_published: 2024-08-14T00:00:00Z date_updated: 2026-08-12T10:01:13Z day: '14' ddc: - '599' department: - _id: BeVi doi: 10.1242/dev.202891 external_id: isi: - '001292608800003' pmid: - '39140247' file: - access_level: open_access checksum: 5e428bda0440d3f957c694b315a8f2a9 content_type: application/pdf creator: cchlebak date_created: 2024-08-28T10:32:16Z date_updated: 2024-08-28T10:32:16Z file_id: '17464' file_name: 2024_Development_Cecalev.pdf file_size: 2085135 relation: main_file success: 1 file_date_updated: 2024-08-28T10:32:16Z has_accepted_license: '1' intvolume: ' 151' isi: 1 issue: '15' language: - iso: eng month: '08' oa: 1 oa_version: Published Version pmid: 1 publication: Development publication_identifier: eissn: - 1477-9129 issn: - 0950-1991 publication_status: published publisher: Company of Biologists quality_controlled: '1' scopus_import: '1' status: public title: Compensation of gene dosage on the mammalian X tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 151 year: '2024' ... --- _id: '14926' author: - first_name: Robert full_name: Hauschild, Robert id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87 last_name: Hauschild orcid: 0000-0001-9843-3522 citation: ama: Hauschild R. Matlab script for analysis of clone dispersal. 2024. doi:10.15479/AT:ISTA:14926 apa: Hauschild, R. (2024). Matlab script for analysis of clone dispersal. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:14926 chicago: Hauschild, Robert. “Matlab Script for Analysis of Clone Dispersal.” Institute of Science and Technology Austria, 2024. https://doi.org/10.15479/AT:ISTA:14926. ieee: R. Hauschild, “Matlab script for analysis of clone dispersal.” Institute of Science and Technology Austria, 2024. ista: Hauschild R. 2024. Matlab script for analysis of clone dispersal, Institute of Science and Technology Austria, 10.15479/AT:ISTA:14926. mla: Hauschild, Robert. Matlab Script for Analysis of Clone Dispersal. Institute of Science and Technology Austria, 2024, doi:10.15479/AT:ISTA:14926. short: R. Hauschild, (2024). corr_author: '1' date_created: 2024-02-02T14:42:26Z date_published: 2024-02-02T00:00:00Z date_updated: 2026-08-12T10:00:13Z day: '02' ddc: - '570' department: - _id: Bio doi: 10.15479/AT:ISTA:14926 file: - access_level: open_access checksum: df7f358ae19a176cf710c0a802ce31b1 content_type: application/octet-stream creator: rhauschild date_created: 2024-02-02T14:40:31Z date_updated: 2024-02-02T14:40:31Z file_id: '14927' file_name: README.md file_size: 736 relation: main_file success: 1 - access_level: open_access checksum: 10194cc11619eccd8f4b24472e465b7f content_type: application/x-zip-compressed creator: rhauschild date_created: 2024-02-02T14:40:31Z date_updated: 2024-02-02T14:40:31Z file_id: '14928' file_name: Supplementary_file_1.zip file_size: 3543 relation: main_file success: 1 file_date_updated: 2024-02-02T14:40:31Z has_accepted_license: '1' license: https://opensource.org/licenses/MIT month: '02' oa: 1 publisher: Institute of Science and Technology Austria related_material: record: - id: '15048' relation: used_in_publication status: public status: public title: Matlab script for analysis of clone dispersal tmp: legal_code_url: https://opensource.org/licenses/MIT name: The MIT License short: MIT type: software user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2024' ... --- OA_place: repository OA_type: green _id: '22234' abstract: - lang: eng text: Lists of nontrivial integral points on some (families of) cubic surfaces. (2024-07-18) article_processing_charge: No author: - first_name: Timothy D full_name: Browning, Timothy D id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 - first_name: Andrew full_name: Sutherland, Andrew last_name: Sutherland citation: ama: 'Browning TD, Sutherland A. Data and code for: Integral points on cubic surfaces: heuristics and numerics. 2024. doi:10.25625/4FLFH8' apa: 'Browning, T. D., & Sutherland, A. (2024). Data and code for: Integral points on cubic surfaces: heuristics and numerics. Göttingen Research Online Data. https://doi.org/10.25625/4FLFH8' chicago: 'Browning, Timothy D, and Andrew Sutherland. “Data and Code for: Integral Points on Cubic Surfaces: Heuristics and Numerics.” Göttingen Research Online Data, 2024. https://doi.org/10.25625/4FLFH8.' ieee: 'T. D. Browning and A. Sutherland, “Data and code for: Integral points on cubic surfaces: heuristics and numerics.” Göttingen Research Online Data, 2024.' ista: 'Browning TD, Sutherland A. 2024. Data and code for: Integral points on cubic surfaces: heuristics and numerics, Göttingen Research Online Data, 10.25625/4FLFH8.' mla: 'Browning, Timothy D., and Andrew Sutherland. Data and Code for: Integral Points on Cubic Surfaces: Heuristics and Numerics. Göttingen Research Online Data, 2024, doi:10.25625/4FLFH8.' short: T.D. Browning, A. Sutherland, (2024). contributor: - first_name: Florian Alexander id: 560601DA-8D36-11E9-A136-7AC1E5697425 last_name: Wilsch orcid: 0000-0001-7302-8256 corr_author: '1' date_created: 2026-07-02T10:38:53Z date_published: 2024-07-22T00:00:00Z date_updated: 2026-08-12T12:15:33Z day: '22' ddc: - '500' department: - _id: TiBr doi: 10.25625/4FLFH8 has_accepted_license: '1' main_file_link: - open_access: '1' url: https://doi.org/10.25625/4FLFH8 month: '07' oa: 1 oa_version: Published Version publisher: Göttingen Research Online Data related_material: record: - id: '20249' relation: used_in_publication status: public status: public title: 'Data and code for: Integral points on cubic surfaces: heuristics and numerics' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: research_data_reference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2024' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold _id: '17457' abstract: - lang: eng text: "Autoantibodies against the protein leucine-rich glioma inactivated 1 (LGI1) cause the most\r\ncommon subtype of autoimmune encephalitis with predominant involvement of the limbic\r\nsystem, associated with seizures and memory deficits. LGI1 and its receptor ADAM22 are part\r\nof a transsynaptic protein complex that includes several proteins involved in presynaptic\r\nneurotransmitter release and postsynaptic glutamate sensing. Autoantibodies against LGI1\r\nincrease excitatory synaptic strength, but studies that genetically disrupt the LGI1-ADAM22\r\ncomplex report a reduction in postsynaptic glutamate receptor-mediated responses. Thus, the\r\nmechanisms underlying the increased synaptic strength induced by LGI1 autoantibodies remain elusive, and the contributions of presynaptic molecules to the LGI1-transsynaptic complex remain unclear. We therefore investigated the presynaptic mechanisms that mediate\r\nautoantibody-induced synaptic strengthening." acknowledged_ssus: - _id: Bio - _id: EM-Fac acknowledgement: 'The authors thank Claudia Sommer for expert technical assistance, the Electron Microscopy Facility of IST-Austria for resources, and Tereza Belinova in the Imaging and Optics Facility of IST-Austria for 3D reconstruction. ' article_processing_charge: Yes article_type: original author: - first_name: Andreas full_name: Ritzau-Jost, Andreas last_name: Ritzau-Jost - first_name: Felix full_name: Gsell, Felix last_name: Gsell - first_name: Josefine full_name: Sell, Josefine last_name: Sell - first_name: Stefan full_name: Sachs, Stefan last_name: Sachs - first_name: Jacqueline-Claire full_name: Montanaro-Punzengruber, Jacqueline-Claire id: 3786AB44-F248-11E8-B48F-1D18A9856A87 last_name: Montanaro-Punzengruber - first_name: Toni full_name: Kirmann, Toni last_name: Kirmann - first_name: Sebastian full_name: Maaß, Sebastian last_name: Maaß - first_name: Sarosh R. full_name: Irani, Sarosh R. last_name: Irani - first_name: Christian full_name: Werner, Christian last_name: Werner - first_name: Christian full_name: Geis, Christian last_name: Geis - first_name: Markus full_name: Sauer, Markus last_name: Sauer - first_name: Ryuichi full_name: Shigemoto, Ryuichi id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Stefan full_name: Hallermann, Stefan last_name: Hallermann citation: ama: Ritzau-Jost A, Gsell F, Sell J, et al. LGI1 autoantibodies enhance synaptic transmission by presynaptic Kv1 loss and increased action potential broadening. Neurology, Neuroimmunology & Neuroinflammation. 2024;11(5):e200284. doi:10.1212/NXI.0000000000200284 apa: Ritzau-Jost, A., Gsell, F., Sell, J., Sachs, S., Montanaro-Punzengruber, J.-C., Kirmann, T., … Hallermann, S. (2024). LGI1 autoantibodies enhance synaptic transmission by presynaptic Kv1 loss and increased action potential broadening. Neurology, Neuroimmunology & Neuroinflammation. Wolters Kluwer. https://doi.org/10.1212/NXI.0000000000200284 chicago: Ritzau-Jost, Andreas, Felix Gsell, Josefine Sell, Stefan Sachs, Jacqueline-Claire Montanaro-Punzengruber, Toni Kirmann, Sebastian Maaß, et al. “LGI1 Autoantibodies Enhance Synaptic Transmission by Presynaptic Kv1 Loss and Increased Action Potential Broadening.” Neurology, Neuroimmunology & Neuroinflammation. Wolters Kluwer, 2024. https://doi.org/10.1212/NXI.0000000000200284. ieee: A. Ritzau-Jost et al., “LGI1 autoantibodies enhance synaptic transmission by presynaptic Kv1 loss and increased action potential broadening,” Neurology, Neuroimmunology & Neuroinflammation, vol. 11, no. 5. Wolters Kluwer, p. e200284, 2024. ista: Ritzau-Jost A, Gsell F, Sell J, Sachs S, Montanaro-Punzengruber J-C, Kirmann T, Maaß S, Irani SR, Werner C, Geis C, Sauer M, Shigemoto R, Hallermann S. 2024. LGI1 autoantibodies enhance synaptic transmission by presynaptic Kv1 loss and increased action potential broadening. Neurology, Neuroimmunology & Neuroinflammation. 11(5), e200284. mla: Ritzau-Jost, Andreas, et al. “LGI1 Autoantibodies Enhance Synaptic Transmission by Presynaptic Kv1 Loss and Increased Action Potential Broadening.” Neurology, Neuroimmunology & Neuroinflammation, vol. 11, no. 5, Wolters Kluwer, 2024, p. e200284, doi:10.1212/NXI.0000000000200284. short: A. Ritzau-Jost, F. Gsell, J. Sell, S. Sachs, J.-C. Montanaro-Punzengruber, T. Kirmann, S. Maaß, S.R. Irani, C. Werner, C. Geis, M. Sauer, R. Shigemoto, S. Hallermann, Neurology, Neuroimmunology & Neuroinflammation 11 (2024) e200284. date_created: 2024-08-25T22:01:07Z date_published: 2024-09-01T00:00:00Z date_updated: 2026-08-12T14:17:59Z day: '01' ddc: - '570' department: - _id: RySh doi: 10.1212/NXI.0000000000200284 external_id: isi: - '001291908600001' pmid: - '39141878' file: - access_level: open_access checksum: 1e6d1230e0387f72752e3268f5330c9e content_type: application/pdf creator: dernst date_created: 2025-01-09T13:42:42Z date_updated: 2025-01-09T13:42:42Z file_id: '18815' file_name: 2024_NeurologyNeuroimmNeuroinflamm_RitzauJost.pdf file_size: 855818 relation: main_file success: 1 file_date_updated: 2025-01-09T13:42:42Z has_accepted_license: '1' intvolume: ' 11' isi: 1 issue: '5' language: - iso: eng month: '09' oa: 1 oa_version: Published Version page: e200284 pmid: 1 project: - _id: 05970B30-7A3F-11EA-A408-12923DDC885E grant_number: I04638 name: LGI1 antibody-induced pathophysiology in synapses publication: Neurology, Neuroimmunology & Neuroinflammation publication_identifier: eissn: - 2332-7812 publication_status: published publisher: Wolters Kluwer quality_controlled: '1' related_material: link: - relation: earlier_version url: https://doi.org/10.1101/2023.10.04.560631 scopus_import: '1' status: public title: LGI1 autoantibodies enhance synaptic transmission by presynaptic Kv1 loss and increased action potential broadening tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 11 year: '2024' ... --- OA_place: repository OA_type: green _id: '19063' abstract: - lang: eng text: "Instruction-tuned Large Language Models (LLMs) show impressive results in numerous practical applications, but they lack essential safety features that are common in other areas of computer science, particularly an explicit separation of instructions and data. This makes them vulnerable to manipulations such as indirect prompt injections and generally unsuitable for safety-critical tasks. Surprisingly, there is currently no established definition or benchmark to quantify this phenomenon. In this work, we close this gap by introducing a formal measure for instruction-data separation and an empirical variant that is calculable from a model's outputs. We also present a new dataset, SEP, that allows estimating the measure for real-world models. Our results on various LLMs show that the problem of instruction-data separation is real: all models fail to achieve high separation, and canonical mitigation techniques, such as prompt engineering and fine-tuning, either fail to substantially improve separation or reduce model utility. The source code and SEP dataset are openly accessible at https://github.com/egozverev/Shold-It-Be-Executed-Or-Processed.\r\n" acknowledged_ssus: - _id: ScienComp acknowledgement: The authors would like to sincerely thank Juan Rocamonde for valuable feedback to our manuscript. We acknowledge the support from the Scientific Service Units (SSU) of ISTA through resources provided by Scientific Computing (SciComp). We thank Dan Alistarh for providing us with computational resources. This work was partially funded by the German Federal Ministry of Education and Research (BMBF) under the grant AIgenCY (16KIS2012) and ELSA – European Lighthouse on Secure and Safe AI funded by the European Union under grant agreement No. 101070617. Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or European Commission. Neither the European Union nor the European Commission can be held responsible for them. article_number: '2403.06833' article_processing_charge: No arxiv: 1 author: - first_name: Egor full_name: Zverev, Egor id: 05162b19-1340-11ed-8f02-fa94e0e8c3bc last_name: Zverev - first_name: Sahar full_name: Abdelnabi, Sahar last_name: Abdelnabi - first_name: Soroush full_name: Tabesh, Soroush id: 06000900-6068-11ef-8d61-c2472ef2e752 last_name: Tabesh orcid: 0009-0003-4119-6281 - first_name: Mario full_name: Fritz, Mario last_name: Fritz - first_name: Christoph full_name: Lampert, Christoph id: 40C20FD2-F248-11E8-B48F-1D18A9856A87 last_name: Lampert orcid: 0000-0001-8622-7887 citation: ama: Zverev E, Abdelnabi S, Tabesh S, Fritz M, Lampert C. Can LLMs separate instructions from data? And what do we even mean by that? arXiv. doi:10.48550/arXiv.2403.06833 apa: Zverev, E., Abdelnabi, S., Tabesh, S., Fritz, M., & Lampert, C. (n.d.). Can LLMs separate instructions from data? And what do we even mean by that? arXiv. https://doi.org/10.48550/arXiv.2403.06833 chicago: Zverev, Egor, Sahar Abdelnabi, Soroush Tabesh, Mario Fritz, and Christoph Lampert. “Can LLMs Separate Instructions from Data? And What Do We Even Mean by That?” ArXiv, n.d. https://doi.org/10.48550/arXiv.2403.06833. ieee: E. Zverev, S. Abdelnabi, S. Tabesh, M. Fritz, and C. Lampert, “Can LLMs separate instructions from data? And what do we even mean by that?,” arXiv. . ista: Zverev E, Abdelnabi S, Tabesh S, Fritz M, Lampert C. Can LLMs separate instructions from data? And what do we even mean by that? arXiv, 2403.06833. mla: Zverev, Egor, et al. “Can LLMs Separate Instructions from Data? And What Do We Even Mean by That?” ArXiv, 2403.06833, doi:10.48550/arXiv.2403.06833. short: E. Zverev, S. Abdelnabi, S. Tabesh, M. Fritz, C. Lampert, ArXiv (n.d.). corr_author: '1' date_created: 2025-02-20T10:13:42Z date_published: 2024-03-01T00:00:00Z date_updated: 2026-08-13T07:26:54Z day: '01' ddc: - '000' department: - _id: GradSch - _id: ChLa doi: 10.48550/arXiv.2403.06833 external_id: arxiv: - '2403.06833' file: - access_level: open_access checksum: 35eb43968684b87be59144603ef10af0 content_type: application/pdf creator: ezverev date_created: 2025-02-20T10:11:45Z date_updated: 2025-02-20T10:11:45Z file_id: '19064' file_name: 2403.06833v3.pdf file_size: 530972 relation: main_file success: 1 file_date_updated: 2025-02-20T10:11:45Z has_accepted_license: '1' language: - iso: eng month: '03' oa: 1 oa_version: Preprint publication: arXiv publication_status: submitted related_material: link: - relation: software url: ' https://github.com/egozverev/Shold-It-Be-Executed-Or-Processed' status: public title: Can LLMs separate instructions from data? And what do we even mean by that? tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: preprint user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2024' ... --- APC_amount: 1530 EUR OA_place: publisher OA_type: gold _id: '15401' abstract: - lang: eng text: Amide-proton-detected magic-angle-spinning NMR of deuterated proteins has become a main technique in NMR-based structural biology. In standard deuteration protocols that rely on D2O-based culture media, non-exchangeable amide sites remain deuterated, making these sites unobservable. Here we demonstrate that proteins produced with a H2O-based culture medium doped with deuterated cell lysate allow scientists to overcome this “reprotonation bottleneck” while retaining a high level of deuteration (ca. 80 %) and narrow linewidths. We quantified coherence lifetimes of several proteins prepared with this labeling pattern over a range of magic-angle-spinning (MAS) frequencies (40–100 kHz). We demonstrate that under commonly used conditions (50–60 kHz MAS), the amide 1H linewidths with our labeling approach are comparable to those of perdeuterated proteins and better than those of protonated samples at 100 kHz. For three proteins in the 33–50 kDa size range, many previously unobserved amides become visible. We report how to prepare the deuterated cell lysate for our approach from fractions of perdeuterated cultures which are usually discarded, and we show that such media can be used identically to commercial media. The residual protonation of Hα sites allows for well-resolved Hα-detected spectra and Hα resonance assignment, exemplified by the de novo assignment of 168 Hα sites in a 39 kDa protein. The approach based on this H2O/cell-lysate deuteration and MAS frequencies compatible with 1.3 or 1.9 mm rotors presents a strong sensitivity benefit over 0.7 mm 100 kHz MAS experiments. acknowledged_ssus: - _id: NMR acknowledgement: "We thank Dominique Madern (IBS Grenoble) for providing the plasmid for MalDH and feedback on the article, Alicia Vallet for excellent support at the Grenoble NMR facility, and Petra Rovo and Margarita Valhondo at the IST Austria NMR Service Unit. We thank Dorothea Anrather in the mass spectrometry facility of Max Perutz Labs for the mass spectrometry analysis using the instruments of the Vienna BioCenter Core Facilities (VBCF). We are grateful to Jean-Pierre Andrieu (Plateforme Seq3A, IBS Grenoble) for the analysis of the amino acid composition of the in-house-prepared lysates. We are grateful to Rasmus Linser (Technical University Dortmund) for sharing a paper draft describing a similar study. This work was supported by the Austrian Science Fund (FWF; project number I5812-B). We thank Tobias Schubeis (Lyon) and the reviewers for constructive input.\r\nThis research has been supported by the Austrian Science Fund (grant no. I5812-B). Part of this work used the platforms of the Grenoble Instruct-ERIC center (ISBG; UAR 3518 CNRS-CEA-UGA-EMBL) within the Grenoble Partnership for 40 Structural Biology (PSB), supported by FRISBI (ANR-10-INBS-0005-02) and GRAL, financed within the University Grenoble Alpes graduate school (Ecoles Universitaires de Recherche) CBH-EUR-GS (ANR-17-EURE-0003). IBS acknowledges integration into the Interdisciplinary Research Institute of Grenoble (IRIG, 45 CEA). Charles-Adrien Arnaud was funded by GRAL." article_processing_charge: Yes article_type: original author: - first_name: Federico full_name: Napoli, Federico id: d42e08e7-f4fc-11eb-af0a-d71e26138f1b last_name: Napoli orcid: 0000-0002-9043-136X - first_name: Jia-Ying full_name: Guan, Jia-Ying last_name: Guan - first_name: Charles-Adrien full_name: Arnaud, Charles-Adrien last_name: Arnaud - first_name: Pavel full_name: Macek, Pavel last_name: Macek - first_name: Hugo full_name: Fraga, Hugo last_name: Fraga - first_name: Cécile full_name: Breyton, Cécile last_name: Breyton - first_name: Paul full_name: Schanda, Paul id: 7B541462-FAF6-11E9-A490-E8DFE5697425 last_name: Schanda orcid: 0000-0002-9350-7606 citation: ama: 'Napoli F, Guan J-Y, Arnaud C-A, et al. Deuteration of proteins boosted by cell lysates: High-resolution amide and Ha magic-angle-spinning (MAS) NMR without the reprotonation bottleneck. Magnetic Resonance. 2024;5(1):33-49. doi:10.5194/mr-5-33-2024' apa: 'Napoli, F., Guan, J.-Y., Arnaud, C.-A., Macek, P., Fraga, H., Breyton, C., & Schanda, P. (2024). Deuteration of proteins boosted by cell lysates: High-resolution amide and Ha magic-angle-spinning (MAS) NMR without the reprotonation bottleneck. Magnetic Resonance. Copernicus Publications. https://doi.org/10.5194/mr-5-33-2024' chicago: 'Napoli, Federico, Jia-Ying Guan, Charles-Adrien Arnaud, Pavel Macek, Hugo Fraga, Cécile Breyton, and Paul Schanda. “Deuteration of Proteins Boosted by Cell Lysates: High-Resolution Amide and Ha Magic-Angle-Spinning (MAS) NMR without the Reprotonation Bottleneck.” Magnetic Resonance. Copernicus Publications, 2024. https://doi.org/10.5194/mr-5-33-2024.' ieee: 'F. Napoli et al., “Deuteration of proteins boosted by cell lysates: High-resolution amide and Ha magic-angle-spinning (MAS) NMR without the reprotonation bottleneck,” Magnetic Resonance, vol. 5, no. 1. Copernicus Publications, pp. 33–49, 2024.' ista: 'Napoli F, Guan J-Y, Arnaud C-A, Macek P, Fraga H, Breyton C, Schanda P. 2024. Deuteration of proteins boosted by cell lysates: High-resolution amide and Ha magic-angle-spinning (MAS) NMR without the reprotonation bottleneck. Magnetic Resonance. 5(1), 33–49.' mla: 'Napoli, Federico, et al. “Deuteration of Proteins Boosted by Cell Lysates: High-Resolution Amide and Ha Magic-Angle-Spinning (MAS) NMR without the Reprotonation Bottleneck.” Magnetic Resonance, vol. 5, no. 1, Copernicus Publications, 2024, pp. 33–49, doi:10.5194/mr-5-33-2024.' short: F. Napoli, J.-Y. Guan, C.-A. Arnaud, P. Macek, H. Fraga, C. Breyton, P. Schanda, Magnetic Resonance 5 (2024) 33–49. corr_author: '1' date_created: 2024-05-16T15:02:43Z date_published: 2024-04-19T00:00:00Z date_updated: 2025-07-17T08:12:23Z day: '19' ddc: - '530' department: - _id: PaSc doi: 10.5194/mr-5-33-2024 external_id: pmid: - '40384771' file: - access_level: open_access checksum: 80ea50114e428461ca9530d3bd5d89e4 content_type: application/pdf creator: dernst date_created: 2024-05-22T07:01:15Z date_updated: 2024-05-22T07:01:15Z file_id: '15413' file_name: 2024_MagneticResonance_Napoli.pdf file_size: 6657865 relation: main_file success: 1 file_date_updated: 2024-05-22T07:01:15Z has_accepted_license: '1' intvolume: ' 5' issue: '1' language: - iso: eng month: '04' oa: 1 oa_version: Published Version page: 33-49 pmid: 1 project: - _id: eb9c82eb-77a9-11ec-83b8-aadd536561cf grant_number: I05812 name: AlloSpace. The emergence and mechanisms of allostery - _id: 3AC91DDA-15DF-11EA-824D-93A3E7B544D1 call_identifier: FWF name: FWF Open Access Fund publication: Magnetic Resonance publication_identifier: issn: - 2699-0016 publication_status: published publisher: Copernicus Publications quality_controlled: '1' scopus_import: '1' status: public title: 'Deuteration of proteins boosted by cell lysates: High-resolution amide and Ha magic-angle-spinning (MAS) NMR without the reprotonation bottleneck' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 5 year: '2024' ... --- OA_place: publisher _id: '15094' abstract: - lang: eng text: "Point sets, geometric networks, and arrangements of hyperplanes are fundamental objects in\r\ndiscrete geometry that have captivated mathematicians for centuries, if not millennia. This\r\nthesis seeks to cast new light on these structures by illustrating specific instances where a\r\ntopological perspective, specifically through discrete Morse theory and persistent homology,\r\nprovides valuable insights.\r\n\r\nAt first glance, the topology of these geometric objects might seem uneventful: point sets\r\nessentially lack of topology, arrangements of hyperplanes are a decomposition of Rd, which\r\nis a contractible space, and the topology of a network primarily involves the enumeration\r\nof connected components and cycles within the network. However, beneath this apparent\r\nsimplicity, there lies an array of intriguing structures, a small subset of which will be uncovered\r\nin this thesis.\r\n\r\nFocused on three case studies, each addressing one of the mentioned objects, this work\r\nwill showcase connections that intertwine topology with diverse fields such as combinatorial\r\ngeometry, algorithms and data structures, and emerging applications like spatial biology.\r\n\r\n" alternative_title: - ISTA Thesis article_processing_charge: No author: - first_name: Sebastiano full_name: Cultrera di Montesano, Sebastiano id: 34D2A09C-F248-11E8-B48F-1D18A9856A87 last_name: Cultrera di Montesano orcid: 0000-0001-6249-0832 citation: ama: Cultrera di Montesano S. Persistence and Morse theory for discrete geometric structures. 2024. doi:10.15479/at:ista:15094 apa: Cultrera di Montesano, S. (2024). Persistence and Morse theory for discrete geometric structures. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:15094 chicago: Cultrera di Montesano, Sebastiano. “Persistence and Morse Theory for Discrete Geometric Structures.” Institute of Science and Technology Austria, 2024. https://doi.org/10.15479/at:ista:15094. ieee: S. Cultrera di Montesano, “Persistence and Morse theory for discrete geometric structures,” Institute of Science and Technology Austria, 2024. ista: Cultrera di Montesano S. 2024. Persistence and Morse theory for discrete geometric structures. Institute of Science and Technology Austria. mla: Cultrera di Montesano, Sebastiano. Persistence and Morse Theory for Discrete Geometric Structures. Institute of Science and Technology Austria, 2024, doi:10.15479/at:ista:15094. short: S. Cultrera di Montesano, Persistence and Morse Theory for Discrete Geometric Structures, Institute of Science and Technology Austria, 2024. corr_author: '1' date_created: 2024-03-08T15:28:10Z date_published: 2024-03-08T00:00:00Z date_updated: 2026-08-13T09:41:57Z day: '08' ddc: - '514' - '500' - '516' degree_awarded: PhD department: - _id: GradSch - _id: HeEd doi: 10.15479/at:ista:15094 ec_funded: 1 file: - access_level: open_access checksum: 1e468bfa42a7dcf04d89f4dadc621c87 content_type: application/pdf creator: scultrer date_created: 2024-03-14T08:55:07Z date_updated: 2024-03-14T08:55:07Z file_id: '15112' file_name: Thesis Sebastiano.pdf file_size: 4106872 relation: main_file success: 1 - access_level: closed checksum: bcbd213490f5a7e68855a092bbce93f1 content_type: application/zip creator: scultrer date_created: 2024-03-14T08:56:24Z date_updated: 2024-03-14T14:14:35Z file_id: '15113' file_name: Thesis (1).zip file_size: 4746234 relation: source_file file_date_updated: 2024-03-14T14:14:35Z has_accepted_license: '1' language: - iso: eng license: https://creativecommons.org/licenses/by-nc-sa/4.0/ month: '03' oa: 1 oa_version: Published Version page: '108' project: - _id: 266A2E9E-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '788183' name: Alpha Shape Theory Extended - _id: 268116B8-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: Z00342 name: Mathematics, Computer Science - _id: 0aa4bc98-070f-11eb-9043-e6fff9c6a316 grant_number: I4887 name: Persistent Homology, Algorithms and Stochastic Geometry - _id: 2561EBF4-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: I02979-N35 name: Persistence and stability of geometric complexes publication_identifier: issn: - 2663-337X publication_status: published publisher: Institute of Science and Technology Austria related_material: record: - id: '15091' relation: part_of_dissertation status: public - id: '15090' relation: part_of_dissertation status: public - id: '15093' relation: part_of_dissertation status: public - id: '13182' relation: part_of_dissertation status: public - id: '11658' relation: part_of_dissertation status: public - id: '11660' relation: part_of_dissertation status: public status: public supervisor: - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 title: Persistence and Morse theory for discrete geometric structures tmp: image: /images/cc_by_nc_sa.png legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) short: CC BY-NC-SA (4.0) type: dissertation user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd year: '2024' ... --- OA_place: publisher OA_type: hybrid _id: '13182' abstract: - lang: eng text: "We characterize critical points of 1-dimensional maps paired in persistent homology\r\ngeometrically and this way get elementary proofs of theorems about the symmetry\r\nof persistence diagrams and the variation of such maps. In particular, we identify\r\nbranching points and endpoints of networks as the sole source of asymmetry and\r\nrelate the cycle basis in persistent homology with a version of the stable marriage\r\nproblem. Our analysis provides the foundations of fast algorithms for maintaining a\r\ncollection of sorted lists together with its persistence diagram." acknowledgement: Open access funding provided by Austrian Science Fund (FWF). This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme, grant no. 788183, from the Wittgenstein Prize, Austrian Science Fund (FWF), Grant No. Z 342-N31, and from the DFG Collaborative Research Center TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian Science Fund (FWF), Grant No. I 02979-N35. The authors of this paper thank anonymous reviewers for their constructive criticism and Monika Henzinger for detailed comments on an earlier version of this paper. article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Ranita full_name: Biswas, Ranita id: 3C2B033E-F248-11E8-B48F-1D18A9856A87 last_name: Biswas orcid: 0000-0002-5372-7890 - first_name: Sebastiano full_name: Cultrera Di Montesano, Sebastiano id: 34D2A09C-F248-11E8-B48F-1D18A9856A87 last_name: Cultrera Di Montesano orcid: 0000-0001-6249-0832 - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 - first_name: Morteza full_name: Saghafian, Morteza id: f86f7148-b140-11ec-9577-95435b8df824 last_name: Saghafian citation: ama: Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. Geometric characterization of the persistence of 1D maps. Journal of Applied and Computational Topology. 2024;8:1101-1119. doi:10.1007/s41468-023-00126-9 apa: Biswas, R., Cultrera di Montesano, S., Edelsbrunner, H., & Saghafian, M. (2024). Geometric characterization of the persistence of 1D maps. Journal of Applied and Computational Topology. Springer Nature. https://doi.org/10.1007/s41468-023-00126-9 chicago: Biswas, Ranita, Sebastiano Cultrera di Montesano, Herbert Edelsbrunner, and Morteza Saghafian. “Geometric Characterization of the Persistence of 1D Maps.” Journal of Applied and Computational Topology. Springer Nature, 2024. https://doi.org/10.1007/s41468-023-00126-9. ieee: R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, and M. Saghafian, “Geometric characterization of the persistence of 1D maps,” Journal of Applied and Computational Topology, vol. 8. Springer Nature, pp. 1101–1119, 2024. ista: Biswas R, Cultrera di Montesano S, Edelsbrunner H, Saghafian M. 2024. Geometric characterization of the persistence of 1D maps. Journal of Applied and Computational Topology. 8, 1101–1119. mla: Biswas, Ranita, et al. “Geometric Characterization of the Persistence of 1D Maps.” Journal of Applied and Computational Topology, vol. 8, Springer Nature, 2024, pp. 1101–19, doi:10.1007/s41468-023-00126-9. short: R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, Journal of Applied and Computational Topology 8 (2024) 1101–1119. corr_author: '1' date_created: 2023-07-02T22:00:44Z date_published: 2024-10-01T00:00:00Z date_updated: 2026-08-13T09:41:57Z day: '01' ddc: - '000' department: - _id: HeEd doi: 10.1007/s41468-023-00126-9 ec_funded: 1 external_id: pmid: - '39678706' file: - access_level: open_access checksum: d493df5088c222b88d9ca46b623ad0ee content_type: application/pdf creator: dernst date_created: 2025-01-09T07:39:41Z date_updated: 2025-01-09T07:39:41Z file_id: '18783' file_name: 2024_JourApplCompTopo_Biswas.pdf file_size: 476896 relation: main_file success: 1 file_date_updated: 2025-01-09T07:39:41Z has_accepted_license: '1' intvolume: ' 8' language: - iso: eng month: '10' oa: 1 oa_version: Published Version page: 1101-1119 pmid: 1 project: - _id: 266A2E9E-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '788183' name: Alpha Shape Theory Extended - _id: 0aa4bc98-070f-11eb-9043-e6fff9c6a316 grant_number: I4887 name: Persistent Homology, Algorithms and Stochastic Geometry - _id: 268116B8-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: Z00342 name: Mathematics, Computer Science publication: Journal of Applied and Computational Topology publication_identifier: eissn: - 2367-1734 issn: - 2367-1726 publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: record: - id: '15094' relation: dissertation_contains status: public - id: '11660' relation: earlier_version status: public scopus_import: '1' status: public title: Geometric characterization of the persistence of 1D maps tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 8 year: '2024' ...