---
OA_place: repository
OA_type: green
_id: '19982'
abstract:
- lang: eng
text: "Dynamically maintaining the minimum cut in a graph G under edge insertions
and deletion is a fundamental problem in dynamic graph algorithms for which no
conditional lower bound on the time per operation exists. In an n-node graph the
best known (1 + o (1))-approximate algorithm takes update time [14]. If the minimum
cut is guaranteed to be (log n )o (1), a deterministic exact algorithm with n
o (1) update time exists [8].\r\nWe present the first fully dynamic algorithm
for (1 + o (1))-approximate minimum cut with n o(1) update time. Our main technical
contribution is to show that it suffices to consider small-volume cuts in suitably
contracted graphs."
acknowledgement: This project has received funding from the European Research Council
(ERC) under the European Union’sHorizon 2020 research and innovation programme (MoDynStruct,
No. 101019564) and the Austrian Science Fund(FWF) grant DOI 10.55776/Z422, grant
DOI 10.55776/I5982, and grant DOI 10.55776/P33775 with additional funding from the
netidee SCIENCE Stiftung, 2020–2024.
article_processing_charge: No
arxiv: 1
author:
- first_name: Antoine
full_name: El-Hayek, Antoine
id: 888a098e-fcac-11ee-aff7-d347be57b725
last_name: El-Hayek
orcid: 0000-0003-4268-7368
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Jason
full_name: Li, Jason
last_name: Li
citation:
ama: 'El-Hayek A, Henzinger M, Li J. Fully dynamic approximate minimum cut in subpolynomial
time per operation. In: Proceedings of the 2025 Annual ACM-SIAM Symposium on
Discrete Algorithms. Society for Industrial and Applied Mathematics; 2025:750-784.
doi:10.1137/1.9781611978322.22'
apa: 'El-Hayek, A., Henzinger, M., & Li, J. (2025). Fully dynamic approximate
minimum cut in subpolynomial time per operation. In Proceedings of the 2025
Annual ACM-SIAM Symposium on Discrete Algorithms (pp. 750–784). New Orleans,
LA, United States: Society for Industrial and Applied Mathematics. https://doi.org/10.1137/1.9781611978322.22'
chicago: El-Hayek, Antoine, Monika Henzinger, and Jason Li. “Fully Dynamic Approximate
Minimum Cut in Subpolynomial Time per Operation.” In Proceedings of the 2025
Annual ACM-SIAM Symposium on Discrete Algorithms, 750–84. Society for Industrial
and Applied Mathematics, 2025. https://doi.org/10.1137/1.9781611978322.22.
ieee: A. El-Hayek, M. Henzinger, and J. Li, “Fully dynamic approximate minimum cut
in subpolynomial time per operation,” in Proceedings of the 2025 Annual ACM-SIAM
Symposium on Discrete Algorithms, New Orleans, LA, United States, 2025, pp.
750–784.
ista: 'El-Hayek A, Henzinger M, Li J. 2025. Fully dynamic approximate minimum cut
in subpolynomial time per operation. Proceedings of the 2025 Annual ACM-SIAM Symposium
on Discrete Algorithms. SODA: Symposium on Discrete Algorithms, 750–784.'
mla: El-Hayek, Antoine, et al. “Fully Dynamic Approximate Minimum Cut in Subpolynomial
Time per Operation.” Proceedings of the 2025 Annual ACM-SIAM Symposium on Discrete
Algorithms, Society for Industrial and Applied Mathematics, 2025, pp. 750–84,
doi:10.1137/1.9781611978322.22.
short: A. El-Hayek, M. Henzinger, J. Li, in:, Proceedings of the 2025 Annual ACM-SIAM
Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics,
2025, pp. 750–784.
conference:
end_date: 2025-01-15
location: New Orleans, LA, United States
name: 'SODA: Symposium on Discrete Algorithms'
start_date: 2025-01-12
corr_author: '1'
date_created: 2025-07-10T13:08:57Z
date_published: 2025-01-07T00:00:00Z
date_updated: 2025-12-29T12:30:04Z
day: '07'
department:
- _id: MoHe
doi: 10.1137/1.9781611978322.22
ec_funded: 1
external_id:
arxiv:
- '2412.15069'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2412.15069
month: '01'
oa: 1
oa_version: Preprint
page: 750-784
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
call_identifier: H2020
grant_number: '101019564'
name: The design and evaluation of modern fully dynamic data structures
- _id: 34def286-11ca-11ed-8bc3-da5948e1613c
grant_number: Z00422
name: Efficient algorithms
- _id: bda196b2-d553-11ed-ba76-8e8ee6c21103
grant_number: I05982
name: Static and Dynamic Hierarchical Graph Decompositions
- _id: bd9e3a2e-d553-11ed-ba76-8aa684ce17fe
grant_number: P33775
name: Fast Algorithms for a Reactive Network Layer
publication: Proceedings of the 2025 Annual ACM-SIAM Symposium on Discrete Algorithms
publication_identifier:
eisbn:
- '9781611978322'
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
status: public
title: Fully dynamic approximate minimum cut in subpolynomial time per operation
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19998'
abstract:
- lang: eng
text: nspired by Richard Feynman’s 1959 lecture and the 1966 film Fantastic Voyage,
the field of micro/nanorobots has evolved from science fiction to reality, with
significant advancements in biomedical and environmental applications. Despite
the rapid progress, the deployment of functional micro/nanorobots remains limited.
This review of the technology roadmap identifies key challenges hindering their
widespread use, focusing on propulsion mechanisms, fundamental theoretical aspects,
collective behavior, material design, and embodied intelligence. We explore the
current state of micro/nanorobot technology, with an emphasis on applications
in biomedicine, environmental remediation, analytical sensing, and other industrial
technological aspects. Additionally, we analyze issues related to scaling up production,
commercialization, and regulatory frameworks that are crucial for transitioning
from research to practical applications. We also emphasize the need for interdisciplinary
collaboration to address both technical and nontechnical challenges, such as sustainability,
ethics, and business considerations. Finally, we propose a roadmap for future
research to accelerate the development of micro/nanorobots, positioning them as
essential tools for addressing grand challenges and enhancing the quality of life.
acknowledgement: 'The content is solely the responsibility of the authors and does
not necessarily represent the official views of the funding agencies. Martin Pumera
acknowledges the financial support of Grant Agency of the Czech Republic (EXPRO:
25-15484X). Xiaohui Ju, Xia Peng and Cagatay M. Oral acknowledge ERDF/ESF project
TECHSCALE (No. CZ.02.01.01/00/22_008/0004587) for financial support. Xiaohui Ju
acknowledges the financial support from Czech Grant Agency GACR standard grant No.
25-15996S. Salvador Pane, Fabian Landers and Semih Sevim acknowledge funding from
the European Union''s Horizon 2020 Proactive Open program under FETPROACT-EIC-05-2019
ANGIE (No. 952152) and the European Union’s Horizon Europe Research and Innovation
Programme under the EVA project (GA no. 101047081).Li Zhang acknowledges funding
support from the Hong Kong Research Grants Council (RGC) with grant numbers R4015-2,
RFS2122-4S03, and STG1/E-401/23-N. Hamed Shahsavan acknowledges Natural Sciences
and Engineering Research Council of Canada (NSERC). Cagatay M. Oral and Hamed Shahsavan
were in part funded by the WIN-CEITEC BUT Joint Seed Funding Program. Qiang He and
Xiankun Lin acknowledge the National Natural Science Foundation of China (22193033,
U22A20346) and Heilongjiang Provincial Key R&D Program (2022ZX02C23) for providing
financial support. Il-Doo Kim acknowledges the National Research Foundation of Korea
(NRF) grant funded by the Korea government (MSIT) (No. RS-2024-00435493). Ramin
Golestanian acknowledges support from the Max Planck School Matter to Life and the
MaxSynBio Consortium which are jointly funded by the Federal Ministry of Education
and Research (BMBF) of Germany and the Max Planck Society. Bradley J. Nelson and
Semih Sevim acknowledge funding from the Swiss National Science Foundation under
SNSF-Sinergia project no. 198643. Raphael Wittkowski is funded by the Deutsche Forschungsgemeinschaft
(DFG, German Research Foundation) − 535275785. Daniel Ahmed acknowledges the support
provided by the European Research Council, as part of the European Union’s Horizon
2020 research and innovation program (grant agreement 853309, SONOBOTS) and Swiss
National Science Foundation (SNSF) under the SNSF Project funding MINT 2022 grant
agreement No. 213058. Daniel Ahmed also extends thanks to Zhiyuan Zhang, Mahmoud
Medany, and Prajwal Agrawal for helpful discussions. Wei Wang acknowledges the National
Natural Science Foundation of China (T2322006) and the Shenzhen Science and Technology
Program (RCYX20210609103122038). Mariana Medina-Sánchez acknowledges the financial
support received from the European Union’s Horizon 2020 research and innovation
program (ERC Starting Grant Nr. 853609), the HORIZON-MSCA-2022-COFUND-101126600-SmartBRAIN3,
and the Grant PID2023-148899OA-I00 funded by MICIU/AEI/ 10.13039/501100011033. Maria
Guix acknowledges the financial support from the Spanish Ministry of Science (grants
RYC2020-945030119-I and PID2023-151682NA-I00 funded by MCIN/ AEI /10.13039/501100011033/
and FEDER) and Unidades de Excelencia María de Maeztu 2021 CEX2021-001202-M. Bahareh
Behkam and Naimat Kalim Bari acknowledge support from the National Science Foundation
(CBET-2318093). Naimat Kalim Bari also gratefully acknowledges financial support
from the Virginia Tech Presidential Postdoctoral Fellowship. Raymond Kapral acknowledges
the Natural Sciences and Engineering Research Council of Canada. Giuseppe Battaglia,
Subhadip Ghosh and Bárbara Borges Fernandes thank the European Research Council
ChessTaG grant 769798 (G.B.); Ministry of Science and Innovation of Spain, Proyectos
I+D+I PID2020-119914RBI00 and Proyectos I+D+I PID2023-149206OB-I00 and the Agencia
de Gestión de Ayudas Universitarias y de Investigación (AGAUR) for the grant SGR
01538 and for SG fellowship (2022 BP 00214). Alexander Leshansky and Konstantin
Morozov acknowledge the support of the Israel Science Foundation (ISF) via grant
no. 2899/21. Alberto Escarpa and Beatriz Jurado Sánchez acknowledge support from
The Spanish Ministry of Science, Innovation and Universities [Grant PID2023-152298NB-I00
funded by MCIN/AEI/10.13039/501100011033 and FEDER, UE (A.E, B. J. S), grant TED2021-132720B-I00,
funded by MCIN/AEI/10.13039/501100011033 and the European Union “NextGenerationEU”/PRTR
(A.E, B. J. S); grant CNS2023-144653 funded by MCIN/AEI/10.13039/ 501100011033 and
the European Union “NextGenerationEU”/PRTR] and Junta de Comunidades de Castilla
la Mancha (grant number SBPLY/23/180225/000058). Jeremie Palacci acknowledges support
from the European Union through ERC grant (VULCAN, 101086998). Josep Puigmartí-Luis
acknowledges the Agencia Estatal de Investigación (AEI) for the María de Maeztu,
project no. CEX2021-001202-M, the Ministerio de Ciencia, Innovación y Universidades
(Grant No. PID2020-116612RB-C33 funded by MCIN/AEI/10.13039/501100011033) and the
Generalitat de Catalunya (2021 SGR 00270). James D. Nicholas, Jordi Ignés-Mullol,
and Josep Puigmartí-Luis acknowledge support from the European Union’s Horizon Europe
Research and Innovation Programme under the EVA project (GA no: 101047081). Josep
Puigmartí-Luis and Jordi Ignés-Mullol acknowledge support from the European Union’s
Horizon 2020 Proactive Open program under FETPROACT-EIC-05-2019 ANGIE (No. 952152).
Jordi Ignés-Mullol also acknowledges the Ministerio de Ciencia, Innovación y Universidades
(Grant No. PID2022-137713NB-C21 funded by MICIU/AEI/10.13039/501100011033). Lauren
Zarzar and Yutong Liu acknowledge support from the US Army Research Office (Grant
W911NF-18-1-0414). Longqiu Li acknowledges the National Natural Science Foundation
of China (52125505, U23A20637) for providing financial support. Wyatt Shields acknowledges
support from the National Science Foundation (NSF) through a CAREER grant (CBET
2143419). Xing Ma acknowledges the support from Shenzhen Science and Technology
Program (RCJC20231211090000001). David H. Gracias acknowledges support from the
NIH-NIBIB (R01EB017742). The content is solely the responsibility of the authors
and does not necessarily represent the official views of the NIH. Samuel Sánchez
acknowledges funding from the European Research Council (ERC) under the European
Union’s Horizon 2020 and Horizon Europe research and innovation programmes (grants
agreement No 866348, i-NanoSwarms), the CERCA program by the Generalitat de Catalunya,
the project 2021 SGR 01606, and the "Centro de Excelencia Severo Ochoa" (Grant CEX2023-001282-S).
Maria Jose Esplandiu acknowledges the Ministerio de Ciencia e Innovación of Spain
(MICIN) through PID 2021-124568NB-I00 and TED2021-129898B-C21 project. Sarthak Misra
and Antonio Lobosco acknowledge funding from European Research Council (ERC) under
the European Union’s Horizon 2020 Research and Innovation Programme (Grant Nr. 866494,
project-MAESTRO). Jinxing Li acknowledges support from the National Science Foundation
under Award Nos. CMMI 2323917, ECCS-2216131, ECCS 2339495, ECCS-2334134, NIH NIBIB
Trailblazer R21 Award, and Henry Ford Hospital + MSU Cancer Research Pilot Award.
Ze Xiong acknowledges the financial support from the International S&T Cooperation
Program of Shanghai (24490710900) and the start-up grant from ShanghaiTech University
(2023F0209-000-02). Yongfeng Mei acknowledges the National Natural Science Foundation
of China (62375054), Science and Technology Commission of Shanghai Municipality
(24520750200, 24CL2900200), and Shanghai Talent Programs. Ayusman Sen thanks the
National Science Foundation, the Air Force Office of Scientific Research, and the
Sloan Foundation for their financial support. Abdon Pena-Francesch acknowledges
support from the Air Force Office of Scientific Research under award number FA9550-24-1-0185.
Katherine Villa acknowledges funding from the European Research Council (ERC) under
the European Union’s Horizon 2020 research and innovation programme (GA no. 101076680;
PhotoSwim) and the support from the Spanish Ministry of Science (MCIN/AEI/10.13039/501100011033)
and the European Union (Next generation EU/PRTR) through the Ramón y Cajal grant,
RYC2021-031075-I. Kang Liang acknowledges support from the Australian Research Council
(DP250101401 and FT220100479) and the National Breast Cancer Foundation, Australia
(IIRS-22–104). Jizhai Cui acknowledges the National Key Technologies R&D Program
of China (2022YFA1207000) and Shanghai Rising-Star Program (24QA2700700). Xiang-Zhong
Chen acknowledges the National Natural Science Foundation of China (52473254) and
the National Key Research and Development Program of China (2023YFB35070003)'
article_processing_charge: Yes (in subscription journal)
article_type: review
author:
- first_name: Xiaohui
full_name: Ju, Xiaohui
last_name: Ju
- first_name: Chuanrui
full_name: Chen, Chuanrui
last_name: Chen
- first_name: Cagatay M.
full_name: Oral, Cagatay M.
last_name: Oral
- first_name: Semih
full_name: Sevim, Semih
last_name: Sevim
- first_name: Ramin
full_name: Golestanian, Ramin
last_name: Golestanian
- first_name: Mengmeng
full_name: Sun, Mengmeng
last_name: Sun
- first_name: Negin
full_name: Bouzari, Negin
last_name: Bouzari
- first_name: Xiankun
full_name: Lin, Xiankun
last_name: Lin
- first_name: Mario
full_name: Urso, Mario
last_name: Urso
- first_name: Jong Seok
full_name: Nam, Jong Seok
last_name: Nam
- first_name: Yujang
full_name: Cho, Yujang
last_name: Cho
- first_name: Xia
full_name: Peng, Xia
last_name: Peng
- first_name: Fabian C.
full_name: Landers, Fabian C.
last_name: Landers
- first_name: Shihao
full_name: Yang, Shihao
last_name: Yang
- first_name: Azin
full_name: Adibi, Azin
last_name: Adibi
- first_name: Nahid
full_name: Taz, Nahid
last_name: Taz
- first_name: Raphael
full_name: Wittkowski, Raphael
last_name: Wittkowski
- first_name: Daniel
full_name: Ahmed, Daniel
last_name: Ahmed
- first_name: Wei
full_name: Wang, Wei
last_name: Wang
- first_name: Veronika
full_name: Magdanz, Veronika
last_name: Magdanz
- first_name: Mariana
full_name: Medina-Sánchez, Mariana
last_name: Medina-Sánchez
- first_name: Maria
full_name: Guix, Maria
last_name: Guix
- first_name: Naimat
full_name: Bari, Naimat
last_name: Bari
- first_name: Bahareh
full_name: Behkam, Bahareh
last_name: Behkam
- first_name: Raymond
full_name: Kapral, Raymond
last_name: Kapral
- first_name: Yaxin
full_name: Huang, Yaxin
last_name: Huang
- first_name: Jinyao
full_name: Tang, Jinyao
last_name: Tang
- first_name: Ben
full_name: Wang, Ben
last_name: Wang
- first_name: Konstantin
full_name: Morozov, Konstantin
last_name: Morozov
- first_name: Alexander
full_name: Leshansky, Alexander
last_name: Leshansky
- first_name: Sarmad Ahmad
full_name: Abbasi, Sarmad Ahmad
last_name: Abbasi
- first_name: Hongsoo
full_name: Choi, Hongsoo
last_name: Choi
- first_name: Subhadip
full_name: Ghosh, Subhadip
last_name: Ghosh
- first_name: Bárbara
full_name: Borges Fernandes, Bárbara
last_name: Borges Fernandes
- first_name: Giuseppe
full_name: Battaglia, Giuseppe
last_name: Battaglia
- first_name: Peer
full_name: Fischer, Peer
last_name: Fischer
- first_name: Ambarish
full_name: Ghosh, Ambarish
last_name: Ghosh
- first_name: Beatriz
full_name: Jurado Sánchez, Beatriz
last_name: Jurado Sánchez
- first_name: Alberto
full_name: Escarpa, Alberto
last_name: Escarpa
- first_name: Quentin
full_name: Martinet, Quentin
id: b37485a8-d343-11eb-a0e9-df8c484ef8ab
last_name: Martinet
orcid: 0000-0002-2916-6632
- first_name: Jérémie A
full_name: Palacci, Jérémie A
id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
last_name: Palacci
orcid: 0000-0002-7253-9465
- first_name: Eric
full_name: Lauga, Eric
last_name: Lauga
- first_name: Jeffrey
full_name: Moran, Jeffrey
last_name: Moran
- first_name: Miguel A.
full_name: Ramos-Docampo, Miguel A.
last_name: Ramos-Docampo
- first_name: Brigitte
full_name: Städler, Brigitte
last_name: Städler
- first_name: Ramón Santiago
full_name: Herrera Restrepo, Ramón Santiago
last_name: Herrera Restrepo
- first_name: Gilad
full_name: Yossifon, Gilad
last_name: Yossifon
- first_name: James D.
full_name: Nicholas, James D.
last_name: Nicholas
- first_name: Jordi
full_name: Ignés-Mullol, Jordi
last_name: Ignés-Mullol
- first_name: Josep
full_name: Puigmartí-Luis, Josep
last_name: Puigmartí-Luis
- first_name: Yutong
full_name: Liu, Yutong
last_name: Liu
- first_name: Lauren D.
full_name: Zarzar, Lauren D.
last_name: Zarzar
- first_name: C. Wyatt
full_name: Shields, C. Wyatt
last_name: Shields
- first_name: Longqiu
full_name: Li, Longqiu
last_name: Li
- first_name: Shanshan
full_name: Li, Shanshan
last_name: Li
- first_name: Xing
full_name: Ma, Xing
last_name: Ma
- first_name: David H.
full_name: Gracias, David H.
last_name: Gracias
- first_name: Orlin
full_name: Velev, Orlin
last_name: Velev
- first_name: Samuel
full_name: Sánchez, Samuel
last_name: Sánchez
- first_name: Maria Jose
full_name: Esplandiu, Maria Jose
last_name: Esplandiu
- first_name: Juliane
full_name: Simmchen, Juliane
last_name: Simmchen
- first_name: Antonio
full_name: Lobosco, Antonio
last_name: Lobosco
- first_name: Sarthak
full_name: Misra, Sarthak
last_name: Misra
- first_name: Zhiguang
full_name: Wu, Zhiguang
last_name: Wu
- first_name: Jinxing
full_name: Li, Jinxing
last_name: Li
- first_name: Alexander
full_name: Kuhn, Alexander
last_name: Kuhn
- first_name: Amir
full_name: Nourhani, Amir
last_name: Nourhani
- first_name: Tijana
full_name: Maric, Tijana
last_name: Maric
- first_name: Ze
full_name: Xiong, Ze
last_name: Xiong
- first_name: Amirreza
full_name: Aghakhani, Amirreza
last_name: Aghakhani
- first_name: Yongfeng
full_name: Mei, Yongfeng
last_name: Mei
- first_name: Yingfeng
full_name: Tu, Yingfeng
last_name: Tu
- first_name: Fei
full_name: Peng, Fei
last_name: Peng
- first_name: Eric
full_name: Diller, Eric
last_name: Diller
- first_name: Mahmut Selman
full_name: Sakar, Mahmut Selman
last_name: Sakar
- first_name: Ayusman
full_name: Sen, Ayusman
last_name: Sen
- first_name: Junhui
full_name: Law, Junhui
last_name: Law
- first_name: Yu
full_name: Sun, Yu
last_name: Sun
- first_name: Abdon
full_name: Pena-Francesch, Abdon
last_name: Pena-Francesch
- first_name: Katherine
full_name: Villa, Katherine
last_name: Villa
- first_name: Huaizhi
full_name: Li, Huaizhi
last_name: Li
- first_name: Donglei Emma
full_name: Fan, Donglei Emma
last_name: Fan
- first_name: Kang
full_name: Liang, Kang
last_name: Liang
- first_name: Tony Jun
full_name: Huang, Tony Jun
last_name: Huang
- first_name: Xiang-Zhong
full_name: Chen, Xiang-Zhong
last_name: Chen
- first_name: Songsong
full_name: Tang, Songsong
last_name: Tang
- first_name: Xueji
full_name: Zhang, Xueji
last_name: Zhang
- first_name: Jizhai
full_name: Cui, Jizhai
last_name: Cui
- first_name: Hong
full_name: Wang, Hong
last_name: Wang
- first_name: Wei
full_name: Gao, Wei
last_name: Gao
- first_name: Vineeth
full_name: Kumar Bandari, Vineeth
last_name: Kumar Bandari
- first_name: Oliver G.
full_name: Schmidt, Oliver G.
last_name: Schmidt
- first_name: Xianghua
full_name: Wu, Xianghua
last_name: Wu
- first_name: Jianguo
full_name: Guan, Jianguo
last_name: Guan
- first_name: Metin
full_name: Sitti, Metin
last_name: Sitti
- first_name: Bradley J.
full_name: Nelson, Bradley J.
last_name: Nelson
- first_name: Salvador
full_name: Pané, Salvador
last_name: Pané
- first_name: Li
full_name: Zhang, Li
last_name: Zhang
- first_name: Hamed
full_name: Shahsavan, Hamed
last_name: Shahsavan
- first_name: Qiang
full_name: He, Qiang
last_name: He
- first_name: Il-Doo
full_name: Kim, Il-Doo
last_name: Kim
- first_name: Joseph
full_name: Wang, Joseph
last_name: Wang
- first_name: Martin
full_name: Pumera, Martin
last_name: Pumera
citation:
ama: Ju X, Chen C, Oral CM, et al. Technology roadmap of micro/nanorobots. ACS
Nano. 2025;19(27):24174-24334. doi:10.1021/acsnano.5c03911
apa: Ju, X., Chen, C., Oral, C. M., Sevim, S., Golestanian, R., Sun, M., … Pumera,
M. (2025). Technology roadmap of micro/nanorobots. ACS Nano. American Chemical
Society. https://doi.org/10.1021/acsnano.5c03911
chicago: Ju, Xiaohui, Chuanrui Chen, Cagatay M. Oral, Semih Sevim, Ramin Golestanian,
Mengmeng Sun, Negin Bouzari, et al. “Technology Roadmap of Micro/Nanorobots.”
ACS Nano. American Chemical Society, 2025. https://doi.org/10.1021/acsnano.5c03911.
ieee: X. Ju et al., “Technology roadmap of micro/nanorobots,” ACS Nano,
vol. 19, no. 27. American Chemical Society, pp. 24174–24334, 2025.
ista: Ju X et al. 2025. Technology roadmap of micro/nanorobots. ACS Nano. 19(27),
24174–24334.
mla: Ju, Xiaohui, et al. “Technology Roadmap of Micro/Nanorobots.” ACS Nano,
vol. 19, no. 27, American Chemical Society, 2025, pp. 24174–334, doi:10.1021/acsnano.5c03911.
short: X. Ju, C. Chen, C.M. Oral, S. Sevim, R. Golestanian, M. Sun, N. Bouzari,
X. Lin, M. Urso, J.S. Nam, Y. Cho, X. Peng, F.C. Landers, S. Yang, A. Adibi, N.
Taz, R. Wittkowski, D. Ahmed, W. Wang, V. Magdanz, M. Medina-Sánchez, M. Guix,
N. Bari, B. Behkam, R. Kapral, Y. Huang, J. Tang, B. Wang, K. Morozov, A. Leshansky,
S.A. Abbasi, H. Choi, S. Ghosh, B. Borges Fernandes, G. Battaglia, P. Fischer,
A. Ghosh, B. Jurado Sánchez, A. Escarpa, Q. Martinet, J.A. Palacci, E. Lauga,
J. Moran, M.A. Ramos-Docampo, B. Städler, R.S. Herrera Restrepo, G. Yossifon,
J.D. Nicholas, J. Ignés-Mullol, J. Puigmartí-Luis, Y. Liu, L.D. Zarzar, C.W. Shields,
L. Li, S. Li, X. Ma, D.H. Gracias, O. Velev, S. Sánchez, M.J. Esplandiu, J. Simmchen,
A. Lobosco, S. Misra, Z. Wu, J. Li, A. Kuhn, A. Nourhani, T. Maric, Z. Xiong,
A. Aghakhani, Y. Mei, Y. Tu, F. Peng, E. Diller, M.S. Sakar, A. Sen, J. Law, Y.
Sun, A. Pena-Francesch, K. Villa, H. Li, D.E. Fan, K. Liang, T.J. Huang, X.-Z.
Chen, S. Tang, X. Zhang, J. Cui, H. Wang, W. Gao, V. Kumar Bandari, O.G. Schmidt,
X. Wu, J. Guan, M. Sitti, B.J. Nelson, S. Pané, L. Zhang, H. Shahsavan, Q. He,
I.-D. Kim, J. Wang, M. Pumera, ACS Nano 19 (2025) 24174–24334.
date_created: 2025-07-10T14:53:27Z
date_published: 2025-06-27T00:00:00Z
date_updated: 2025-12-30T09:07:44Z
day: '27'
ddc:
- '540'
department:
- _id: JePa
doi: 10.1021/acsnano.5c03911
external_id:
isi:
- '001519731400001'
pmid:
- '40577644'
file:
- access_level: open_access
checksum: 5f6034144bf9f649ff74fed01b04aa22
content_type: application/pdf
creator: dernst
date_created: 2025-12-30T09:07:31Z
date_updated: 2025-12-30T09:07:31Z
file_id: '20901'
file_name: 2025_ACSNano_Ju.pdf
file_size: 11892237
relation: main_file
success: 1
file_date_updated: 2025-12-30T09:07:31Z
has_accepted_license: '1'
intvolume: ' 19'
isi: 1
issue: '27'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 24174-24334
pmid: 1
project:
- _id: bdac72da-d553-11ed-ba76-eae56e802b74
grant_number: '101086998'
name: 'VULCAN: matter, powered from within'
publication: ACS Nano
publication_identifier:
eissn:
- 1936-086X
issn:
- 1936-0851
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Technology roadmap of micro/nanorobots
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 19
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20002'
abstract:
- lang: eng
text: While the most widely used CRISPR-Cas enzyme is the Cas9 endonuclease from
Streptococcus pyogenes (Cas9), it exhibits single-turnover enzyme kinetics which
leads to long residence times on product DNA. This blocks access to DNA repair
machinery and acts as a major bottleneck during CRISPR-Cas9 gene editing. Cas9
can eventually be removed from the product by extrinsic factors, such as translocating
polymerases, but the mechanisms contributing to Cas9 dissociation following cleavage
remain poorly understood. Here, we employ truncated guide RNAs as a strategy to
weaken PAM-distal nucleic acid interactions and promote faster enzyme turnover.
Using kinetics-guided cryo-EM, we examine the conformational landscape of a multi-turnover
Cas9, including the first detailed snapshots of Cas9 dissociating from product
DNA. We discovered that while the PAM-distal product dissociates from Cas9 following
cleavage, tight binding of the PAM-proximal product directly inhibits re-binding
of new targets. Our work provides direct evidence as to why Cas9 acts as a single-turnover
enzyme and will guide future Cas9 engineering efforts.
acknowledgement: We thank Dr. Kenneth Johnson for assistance with kinetic analysis
and helpful discussion as well as Dr. Jack Bravo and members of the Taylor lab for
insightful comments on the manuscript. Data were collected at the Sauer Structural
Biology Laboratory at the University of Texas at Austin. This work was supported
by a National Institutes of Health grant R35GM138348 (to D.W.T.). The content is
solely the responsibility of the authors and does not necessarily represent the
official views of the National Institutes of Health. Computational resources for
this work were supported by the Welch Foundation grant F-1938 (to D.W.T.).
article_number: '5681'
article_processing_charge: Yes
article_type: original
author:
- first_name: Kaitlyn
full_name: Kiernan, Kaitlyn
id: 91e8ab53-b70a-11ef-adcb-f779f833b451
last_name: Kiernan
- first_name: David W.
full_name: Taylor, David W.
last_name: Taylor
citation:
ama: Kiernan K, Taylor DW. Visualization of a multi-turnover Cas9 after product
release. Nature Communications. 2025;16. doi:10.1038/s41467-025-60668-7
apa: Kiernan, K., & Taylor, D. W. (2025). Visualization of a multi-turnover
Cas9 after product release. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-025-60668-7
chicago: Kiernan, Kaitlyn, and David W. Taylor. “Visualization of a Multi-Turnover
Cas9 after Product Release.” Nature Communications. Springer Nature, 2025.
https://doi.org/10.1038/s41467-025-60668-7.
ieee: K. Kiernan and D. W. Taylor, “Visualization of a multi-turnover Cas9 after
product release,” Nature Communications, vol. 16. Springer Nature, 2025.
ista: Kiernan K, Taylor DW. 2025. Visualization of a multi-turnover Cas9 after product
release. Nature Communications. 16, 5681.
mla: Kiernan, Kaitlyn, and David W. Taylor. “Visualization of a Multi-Turnover Cas9
after Product Release.” Nature Communications, vol. 16, 5681, Springer
Nature, 2025, doi:10.1038/s41467-025-60668-7.
short: K. Kiernan, D.W. Taylor, Nature Communications 16 (2025).
date_created: 2025-07-13T22:01:21Z
date_published: 2025-07-01T00:00:00Z
date_updated: 2025-07-14T08:30:06Z
day: '01'
ddc:
- '570'
department:
- _id: LeSa
doi: 10.1038/s41467-025-60668-7
external_id:
pmid:
- '40593576'
file:
- access_level: open_access
checksum: fa9a1eaa7e2e60467768cbaed307aceb
content_type: application/pdf
creator: dernst
date_created: 2025-07-14T08:28:25Z
date_updated: 2025-07-14T08:28:25Z
file_id: '20018'
file_name: 2025_NatureComm_Kiernan.pdf
file_size: 6875712
relation: main_file
success: 1
file_date_updated: 2025-07-14T08:28:25Z
has_accepted_license: '1'
intvolume: ' 16'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
eissn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Visualization of a multi-turnover Cas9 after product release
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '20003'
abstract:
- lang: eng
text: The problem of mobile impurities in quantum baths is of fundamental importance
in many-body physics. There has recently been significant progress regarding our
understanding of this due to cold atom experiments, but so far it has mainly been
concerned with cases where the bath has no or only weak interactions, or the impurity
interacts weakly with the bath. Here, we address this gap by developing a new
theoretical framework for exploring a mobile impurity interacting strongly with
a highly correlated bath of bosons in the quantum critical regime of a Mott insulator
(MI) to superfluid (SF) quantum phase transition. Our framework is based on a
powerful quantum Gutzwiller (QGW) description of the bosonic bath combined with
diagrammatic field theory for the impurity-bath interactions. By resumming a selected
class of diagrams to infinite order, a rich picture emerges where the impurity
is dressed by the fundamental modes of the bath, which change character from gapped
particle-hole excitations in the MI to Higgs and gapless Goldstone modes in the
SF. This gives rise to the existence of several quasiparticle (polaron) branches
with properties reflecting the strongly correlated environment. In particular,
one polaron branch exhibits a sharp cusp in its energy, while a new ground-state
polaron emerges at the O(2) quantum phase transition point for integer filling,
which reflects the nonanalytic behavior at the transition and the appearance of
the Goldstone mode in the SF phase. Smooth versions of these features are inherited
in the polaron spectrum away from integer filling due to the influence of Mott
physics on the bosonic bath. We furthermore compare our diagrammatic results with
quantum Monte Carlo calculations, obtaining excellent agreement. This accuracy
is quite remarkable for such a highly non-trivial case of strong interactions
between the impurity and bosons in a maximally correlated quantum critical regime,
and it establishes the utility of our framework. Finally, our results show how
impurities can be used as quantum sensors and highlight fundamental differences
between experiments performed at a fixed particle number or a fixed chemical potential.
article_number: '002'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ragheed
full_name: Al Hyder, Ragheed
id: d1c405be-ae15-11ed-8510-ccf53278162e
last_name: Al Hyder
- first_name: Victor E.
full_name: Colussi, Victor E.
last_name: Colussi
- first_name: Matija
full_name: Čufar, Matija
last_name: Čufar
- first_name: Joachim
full_name: Brand, Joachim
last_name: Brand
- first_name: Alessio
full_name: Recati, Alessio
last_name: Recati
- first_name: Georg M.
full_name: Bruun, Georg M.
last_name: Bruun
citation:
ama: Al Hyder R, Colussi VE, Čufar M, Brand J, Recati A, Bruun GM. Lattice Bose
polarons at strong coupling and quantum criticality. Scipost Physics. 2025;19(1).
doi:10.21468/SciPostPhys.19.1.002
apa: Al Hyder, R., Colussi, V. E., Čufar, M., Brand, J., Recati, A., & Bruun,
G. M. (2025). Lattice Bose polarons at strong coupling and quantum criticality.
Scipost Physics. SciPost Foundation. https://doi.org/10.21468/SciPostPhys.19.1.002
chicago: Al Hyder, Ragheed, Victor E. Colussi, Matija Čufar, Joachim Brand, Alessio
Recati, and Georg M. Bruun. “Lattice Bose Polarons at Strong Coupling and Quantum
Criticality.” Scipost Physics. SciPost Foundation, 2025. https://doi.org/10.21468/SciPostPhys.19.1.002.
ieee: R. Al Hyder, V. E. Colussi, M. Čufar, J. Brand, A. Recati, and G. M. Bruun,
“Lattice Bose polarons at strong coupling and quantum criticality,” Scipost
Physics, vol. 19, no. 1. SciPost Foundation, 2025.
ista: Al Hyder R, Colussi VE, Čufar M, Brand J, Recati A, Bruun GM. 2025. Lattice
Bose polarons at strong coupling and quantum criticality. Scipost Physics. 19(1),
002.
mla: Al Hyder, Ragheed, et al. “Lattice Bose Polarons at Strong Coupling and Quantum
Criticality.” Scipost Physics, vol. 19, no. 1, 002, SciPost Foundation,
2025, doi:10.21468/SciPostPhys.19.1.002.
short: R. Al Hyder, V.E. Colussi, M. Čufar, J. Brand, A. Recati, G.M. Bruun, Scipost
Physics 19 (2025).
corr_author: '1'
date_created: 2025-07-13T22:01:22Z
date_published: 2025-07-01T00:00:00Z
date_updated: 2025-09-30T14:00:26Z
day: '01'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.21468/SciPostPhys.19.1.002
external_id:
arxiv:
- '2412.07597'
isi:
- '001523515000002'
file:
- access_level: open_access
checksum: a2ce71aab685b7ea29e7abcf81e2fcc1
content_type: application/pdf
creator: dernst
date_created: 2025-07-14T07:02:38Z
date_updated: 2025-07-14T07:02:38Z
file_id: '20014'
file_name: 2025_SciPostPhys_AlHyder.pdf
file_size: 9769204
relation: main_file
success: 1
file_date_updated: 2025-07-14T07:02:38Z
has_accepted_license: '1'
intvolume: ' 19'
isi: 1
issue: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Scipost Physics
publication_identifier:
eissn:
- 2542-4653
publication_status: published
publisher: SciPost Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: Lattice Bose polarons at strong coupling and quantum criticality
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 19
year: '2025'
...
---
OA_place: publisher
OA_type: gold
_id: '20004'
abstract:
- lang: eng
text: "A long-standing conjecture of Eckhoff, Linhart, and Welzl, which would generalize
McMullen’s Upper Bound Theorem for polytopes and refine asymptotic bounds due
to Clarkson, asserts that for k ⩽ ⌊(n-d-2)/2⌋, the complexity of the (⩽ k)-level
in a simple arrangement of n hemispheres in S^d is maximized for arrangements
that are polar duals of neighborly d-polytopes. We prove this conjecture in the
case n = d+4. By Gale duality, this implies the following result about crossing
numbers: In every spherical arc drawing of K_n in S² (given by a set V ⊂ S² of
n unit vectors connected by spherical arcs), the number of crossings is at least
1/4 ⌊n/2⌋ ⌊(n-1)/2⌋ ⌊(n-2)/2⌋ ⌊(n-3)/2⌋. This lower bound is attained if every
open linear halfspace contains at least ⌊(n-2)/2⌋ of the vectors in V.\r\nMoreover,
we determine the space of all linear and affine relations that hold between the
face numbers of levels in simple arrangements of n hemispheres in S^d. This completes
a long line of research on such relations, answers a question posed by Andrzejak
and Welzl in 2003, and generalizes the classical fact that the Dehn-Sommerville
relations generate all linear relations between the face numbers of simple polytopes
(which correspond to the 0-level).\r\nTo prove these results, we introduce the
notion of the g-matrix, which encodes the face numbers of levels in an arrangement
and generalizes the classical g-vector of a polytope."
alternative_title:
- LIPIcs
article_number: '75'
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Elizaveta
full_name: Streltsova, Elizaveta
id: 57a170da-dc96-11ea-b7c8-ab3565071bf7
last_name: Streltsova
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: 'Streltsova E, Wagner U. Levels in arrangements: Linear relations, the g-matrix,
and applications to crossing numbers. In: 41st International Symposium on
Computational Geometry. Vol 332. Schloss Dagstuhl - Leibniz-Zentrum für Informatik;
2025. doi:10.4230/LIPIcs.SoCG.2025.75'
apa: 'Streltsova, E., & Wagner, U. (2025). Levels in arrangements: Linear relations,
the g-matrix, and applications to crossing numbers. In 41st International
Symposium on Computational Geometry (Vol. 332). Kanazawa, Japan: Schloss Dagstuhl
- Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2025.75'
chicago: 'Streltsova, Elizaveta, and Uli Wagner. “Levels in Arrangements: Linear
Relations, the g-Matrix, and Applications to Crossing Numbers.” In 41st International
Symposium on Computational Geometry, Vol. 332. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2025. https://doi.org/10.4230/LIPIcs.SoCG.2025.75.'
ieee: 'E. Streltsova and U. Wagner, “Levels in arrangements: Linear relations, the
g-matrix, and applications to crossing numbers,” in 41st International Symposium
on Computational Geometry, Kanazawa, Japan, 2025, vol. 332.'
ista: 'Streltsova E, Wagner U. 2025. Levels in arrangements: Linear relations, the
g-matrix, and applications to crossing numbers. 41st International Symposium
on Computational Geometry. SoCG: Symposium on Computational Geometry, LIPIcs,
vol. 332, 75.'
mla: 'Streltsova, Elizaveta, and Uli Wagner. “Levels in Arrangements: Linear Relations,
the g-Matrix, and Applications to Crossing Numbers.” 41st International Symposium
on Computational Geometry, vol. 332, 75, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2025, doi:10.4230/LIPIcs.SoCG.2025.75.'
short: E. Streltsova, U. Wagner, in:, 41st International Symposium on Computational
Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2025.
conference:
end_date: 2025-06-27
location: Kanazawa, Japan
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2025-06-23
corr_author: '1'
date_created: 2025-07-13T22:01:22Z
date_published: 2025-06-20T00:00:00Z
date_updated: 2025-07-14T07:19:19Z
day: '20'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.4230/LIPIcs.SoCG.2025.75
external_id:
arxiv:
- '2504.07752'
- '2504.07770'
file:
- access_level: open_access
checksum: a8f7feb1aa3b896e31195841a989d622
content_type: application/pdf
creator: dernst
date_created: 2025-07-14T07:11:04Z
date_updated: 2025-07-14T07:11:04Z
file_id: '20015'
file_name: 2025_LIPIcs.SoCG_Streltsova.pdf
file_size: 952807
relation: main_file
success: 1
file_date_updated: 2025-07-14T07:11:04Z
has_accepted_license: '1'
intvolume: ' 332'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: ' 41st International Symposium on Computational Geometry'
publication_identifier:
eissn:
- 1868-8969
isbn:
- '9783959773706'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Levels in arrangements: Linear relations, the g-matrix, and applications to
crossing numbers'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 332
year: '2025'
...
---
OA_place: publisher
OA_type: gold
_id: '20005'
abstract:
- lang: eng
text: "We generalize a classical result by Boris Delaunay that introduced Delaunay
triangulations. In particular, we prove that for a locally finite and coarsely
dense generic point set A in ℝ^d, every generic point of ℝ^d belongs to exactly
binom(d+k,d) simplices whose vertices belong to A and whose circumspheres enclose
exactly k points of A. We extend this result to the cases in which the points
are weighted, and when A contains only finitely many points in ℝ^d or in \U0001D54A^d.
Furthermore, we use the result to give a new geometric proof for the fact that
volumes of hypersimplices are Eulerian numbers."
acknowledgement: "Herbert Edelsbrunner: partially supported by the Wittgenstein Prize,
Austrian Science\r\nFund (FWF), grant no. Z 342-N31, and by the DFG Collaborative
Research Center TRR 109,\r\nAustrian Science Fund (FWF), grant no. I 02979-N35.\r\nAlexey
Garber: partially supported by the Simons Foundation.\r\nMorteza Saghafian: partially
supported by the Wittgenstein Prize, Austrian Science Fund (FWF),\r\ngrant no. Z
342-N31, and by the DFG Collaborative Research Center TRR 109, Austrian Science\r\nFund
(FWF), grant no. I 02979-N35"
alternative_title:
- LIPIcs
article_number: '43'
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Alexey
full_name: Garber, Alexey
last_name: Garber
- first_name: Morteza
full_name: Saghafian, Morteza
id: f86f7148-b140-11ec-9577-95435b8df824
last_name: Saghafian
citation:
ama: 'Edelsbrunner H, Garber A, Saghafian M. On spheres with k points inside. In:
41st International Symposium on Computational Geometry. Vol 332. Schloss
Dagstuhl - Leibniz-Zentrum für Informatik; 2025. doi:10.4230/LIPIcs.SoCG.2025.43'
apa: 'Edelsbrunner, H., Garber, A., & Saghafian, M. (2025). On spheres with
k points inside. In 41st International Symposium on Computational Geometry
(Vol. 332). Kanazawa, Japan: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
https://doi.org/10.4230/LIPIcs.SoCG.2025.43'
chicago: Edelsbrunner, Herbert, Alexey Garber, and Morteza Saghafian. “On Spheres
with k Points Inside.” In 41st International Symposium on Computational Geometry,
Vol. 332. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2025. https://doi.org/10.4230/LIPIcs.SoCG.2025.43.
ieee: H. Edelsbrunner, A. Garber, and M. Saghafian, “On spheres with k points inside,”
in 41st International Symposium on Computational Geometry, Kanazawa, Japan,
2025, vol. 332.
ista: 'Edelsbrunner H, Garber A, Saghafian M. 2025. On spheres with k points inside.
41st International Symposium on Computational Geometry. SoCG: Symposium on Computational
Geometry, LIPIcs, vol. 332, 43.'
mla: Edelsbrunner, Herbert, et al. “On Spheres with k Points Inside.” 41st International
Symposium on Computational Geometry, vol. 332, 43, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2025, doi:10.4230/LIPIcs.SoCG.2025.43.
short: H. Edelsbrunner, A. Garber, M. Saghafian, in:, 41st International Symposium
on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2025.
conference:
end_date: 2025-06-27
location: Kanazawa, Japan
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2025-06-23
corr_author: '1'
date_created: 2025-07-13T22:01:22Z
date_published: 2025-06-20T00:00:00Z
date_updated: 2025-07-14T07:26:14Z
day: '20'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2025.43
external_id:
arxiv:
- '2410.21204'
file:
- access_level: open_access
checksum: b5313ed8575ea87913c71a6e3c7513c8
content_type: application/pdf
creator: dernst
date_created: 2025-07-14T07:24:22Z
date_updated: 2025-07-14T07:24:22Z
file_id: '20016'
file_name: 2025_LIPIcs.SoCG_Edelsbrunner.pdf
file_size: 661893
relation: main_file
success: 1
file_date_updated: 2025-07-14T07:24:22Z
has_accepted_license: '1'
intvolume: ' 332'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 268116B8-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00342
name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I02979-N35
name: Persistence and stability of geometric complexes
publication: 41st International Symposium on Computational Geometry
publication_identifier:
eissn:
- 1868-8969
isbn:
- '9783959773706'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: On spheres with k points inside
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 332
year: '2025'
...
---
OA_place: publisher
OA_type: gold
_id: '20006'
abstract:
- lang: eng
text: In numerous fields, dynamic time series data require continuous updates, necessitating
efficient data processing techniques for accurate analysis. This paper examines
the banana tree data structure, specifically designed to efficiently maintain
the multi-scale topological descriptor commonly known as persistent homology for
dynamically changing time series data. We implement this data structure and conduct
an experimental study to assess its properties and runtime for update operations.
Our findings indicate that banana trees are highly effective with unbiased random
data, outperforming state-of-the-art static algorithms in these scenarios. Additionally,
our results show that real-world time series share structural properties with
unbiased random walks, suggesting potential practical utility for our implementation.
acknowledgement: "Lara Ost: Supported by the Vienna Graduate School on Computational
Optimization\r\n(VGSCO), FWF project no. W1260-N35.\r\nSebastiano Cultrera di Montesano:
Supported by the Eric and Wendy Schmidt Center at the Broad Institute of MIT and
Harvard.\r\nHerbert Edelsbrunner: Partially supported by the Wittgenstein Prize,
FWF grant no. Z 342-N31,\r\nand by the DFG Collaborative Research Center TRR 109,
FWF grant no. I 02979-N35."
alternative_title:
- LIPIcs
article_number: '71'
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Lara
full_name: Ost, Lara
last_name: Ost
- first_name: Sebastiano
full_name: Cultrera di Montesano, Sebastiano
id: 34D2A09C-F248-11E8-B48F-1D18A9856A87
last_name: Cultrera di Montesano
orcid: 0000-0001-6249-0832
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
citation:
ama: 'Ost L, Cultrera di Montesano S, Edelsbrunner H. Banana trees for the persistence
in time series experimentally. In: 41st International Symposium on Computational
Geometry. Vol 332. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2025.
doi:10.4230/LIPIcs.SoCG.2025.71'
apa: 'Ost, L., Cultrera di Montesano, S., & Edelsbrunner, H. (2025). Banana
trees for the persistence in time series experimentally. In 41st International
Symposium on Computational Geometry (Vol. 332). Kanazawa, Japan: Schloss Dagstuhl
- Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2025.71'
chicago: Ost, Lara, Sebastiano Cultrera di Montesano, and Herbert Edelsbrunner.
“Banana Trees for the Persistence in Time Series Experimentally.” In 41st International
Symposium on Computational Geometry, Vol. 332. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2025. https://doi.org/10.4230/LIPIcs.SoCG.2025.71.
ieee: L. Ost, S. Cultrera di Montesano, and H. Edelsbrunner, “Banana trees for the
persistence in time series experimentally,” in 41st International Symposium
on Computational Geometry, Kanazawa, Japan, 2025, vol. 332.
ista: 'Ost L, Cultrera di Montesano S, Edelsbrunner H. 2025. Banana trees for the
persistence in time series experimentally. 41st International Symposium on Computational
Geometry. SoCG: Symposium on Computational Geometry, LIPIcs, vol. 332, 71.'
mla: Ost, Lara, et al. “Banana Trees for the Persistence in Time Series Experimentally.”
41st International Symposium on Computational Geometry, vol. 332, 71, Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2025, doi:10.4230/LIPIcs.SoCG.2025.71.
short: L. Ost, S. Cultrera di Montesano, H. Edelsbrunner, in:, 41st International
Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2025.
conference:
end_date: 2025-06-27
location: Kanazawa, Japan
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2025-06-23
corr_author: '1'
date_created: 2025-07-13T22:01:22Z
date_published: 2025-06-20T00:00:00Z
date_updated: 2025-12-30T11:04:33Z
day: '20'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2025.71
external_id:
arxiv:
- '2405.17920'
file:
- access_level: open_access
checksum: 3a4a7a707a56e0cfdf51428782dee55a
content_type: application/pdf
creator: dernst
date_created: 2025-07-14T08:23:38Z
date_updated: 2025-07-14T08:23:38Z
file_id: '20017'
file_name: 2025_LIPIcs.SoCG_Ost.pdf
file_size: 834623
relation: main_file
success: 1
file_date_updated: 2025-07-14T08:23:38Z
has_accepted_license: '1'
intvolume: ' 332'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 9B9290DE-BA93-11EA-9121-9846C619BF3A
grant_number: W1260-N35
name: Vienna Graduate School on Computational Optimization
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I02979-N35
name: Persistence and stability of geometric complexes
- _id: 268116B8-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00342
name: Mathematics, Computer Science
publication: 41st International Symposium on Computational Geometry
publication_identifier:
eissn:
- 1868-8969
isbn:
- '9783959773706'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/laraost/BananaPersist
scopus_import: '1'
status: public
title: Banana trees for the persistence in time series experimentally
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 332
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20007'
abstract:
- lang: eng
text: 'There is no known polynomial-time algorithm for graph isomorphism testing,
but elementary combinatorial “refinement” algorithms seem to be very efficient
in practice. Some philosophical justification for this phenomenon is provided
by a classical theorem of Babai, Erdős and Selkow: an extremely simple polynomial-time
combinatorial algorithm (variously known as “naïve refinement”, “naïve vertex
classification”, “colour refinement” or the “1-dimensional Weisfeiler–Leman algorithm”)
yields a so-called canonical labelling scheme for “almost all graphs”. More precisely,
for a typical outcome of a random graph G(n,1/2), this simple combinatorial algorithm
assigns labels to vertices in a way that easily permits isomorphism-testing against
any other graph.'
acknowledgement: All authors were supported by ERC Starting Grant “RANDSTRUCT” No.
101076777. Michael Anastos was also supported in part by the Austrian Science Fund
(FWF)[10.55776/ESP3863424] and by the European Union’s Horizon 2020 research and
innovation programme under the Marie Skłodowska-Curie grant agreement No. 101034413.
For Open Access purposes, the authors have applied a CC BY public copyright license
to any author accepted manuscript version arising from this submission.
article_processing_charge: Yes (via OA deal)
arxiv: 1
author:
- first_name: Michael
full_name: Anastos, Michael
id: 0b2a4358-bb35-11ec-b7b9-e3279b593dbb
last_name: Anastos
- first_name: Matthew Alan
full_name: Kwan, Matthew Alan
id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
last_name: Kwan
orcid: 0000-0002-4003-7567
- first_name: Benjamin
full_name: Moore, Benjamin
id: 6dc1a1be-bf1c-11ed-8d2b-d044840f49d6
last_name: Moore
citation:
ama: 'Anastos M, Kwan MA, Moore B. Smoothed analysis for graph isomorphism. In:
Proceedings of the 57th Annual ACM Symposium on Theory of Computing. Association
for Computing Machinery; 2025:2098-2106. doi:10.1145/3717823.3718173'
apa: 'Anastos, M., Kwan, M. A., & Moore, B. (2025). Smoothed analysis for graph
isomorphism. In Proceedings of the 57th Annual ACM Symposium on Theory of Computing
(pp. 2098–2106). Prague, Czechia: Association for Computing Machinery. https://doi.org/10.1145/3717823.3718173'
chicago: Anastos, Michael, Matthew Alan Kwan, and Benjamin Moore. “Smoothed Analysis
for Graph Isomorphism.” In Proceedings of the 57th Annual ACM Symposium on
Theory of Computing, 2098–2106. Association for Computing Machinery, 2025.
https://doi.org/10.1145/3717823.3718173.
ieee: M. Anastos, M. A. Kwan, and B. Moore, “Smoothed analysis for graph isomorphism,”
in Proceedings of the 57th Annual ACM Symposium on Theory of Computing,
Prague, Czechia, 2025, pp. 2098–2106.
ista: 'Anastos M, Kwan MA, Moore B. 2025. Smoothed analysis for graph isomorphism.
Proceedings of the 57th Annual ACM Symposium on Theory of Computing. STOC: Symposium
on Theory of Computing, 2098–2106.'
mla: Anastos, Michael, et al. “Smoothed Analysis for Graph Isomorphism.” Proceedings
of the 57th Annual ACM Symposium on Theory of Computing, Association for Computing
Machinery, 2025, pp. 2098–106, doi:10.1145/3717823.3718173.
short: M. Anastos, M.A. Kwan, B. Moore, in:, Proceedings of the 57th Annual ACM
Symposium on Theory of Computing, Association for Computing Machinery, 2025, pp.
2098–2106.
conference:
end_date: 2025-06-27
location: Prague, Czechia
name: 'STOC: Symposium on Theory of Computing'
start_date: 2025-06-23
corr_author: '1'
date_created: 2025-07-13T22:01:23Z
date_published: 2025-06-15T00:00:00Z
date_updated: 2025-07-14T06:33:50Z
day: '15'
ddc:
- '000'
department:
- _id: MaKw
doi: 10.1145/3717823.3718173
ec_funded: 1
external_id:
arxiv:
- '2410.06095'
file:
- access_level: open_access
checksum: cf0ab9cb9c6abda188de13dc3f9a4c9b
content_type: application/pdf
creator: dernst
date_created: 2025-07-14T06:13:10Z
date_updated: 2025-07-14T06:13:10Z
file_id: '20012'
file_name: 2025_STOC_Anastos.pdf
file_size: 706445
relation: main_file
success: 1
file_date_updated: 2025-07-14T06:13:10Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 2098-2106
project:
- _id: bd95085b-d553-11ed-ba76-e55d3349be45
grant_number: '101076777'
name: Randomness and structure in combinatorics
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
- _id: 8f906bd2-16d5-11f0-9cad-e07be8aa9ac9
grant_number: ESP3863424
name: Combinatorial Optimisation Problems on Sparse Random Graphs
publication: Proceedings of the 57th Annual ACM Symposium on Theory of Computing
publication_identifier:
isbn:
- '9798400715105'
issn:
- 0737-8017
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Smoothed analysis for graph isomorphism
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20009'
abstract:
- lang: eng
text: The suppression of recombination between young X and Y chromosomes is a crucial
step in their evolution, but why it occurs is not known. The detailed characterization
of the polymorphic sex chromosomes of the fourspine stickleback by Liu et al.
promises to shed new light on this longstanding question.
acknowledgement: I thank the Vicoso group for in-depth discussions of the original
article highlighted here. This work was supported by an Austrian Research Fund (FWF)
grant to B.V. (PAT 8748323).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Beatriz
full_name: Vicoso, Beatriz
id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
last_name: Vicoso
orcid: 0000-0002-4579-8306
citation:
ama: Vicoso B. Sex chromosome evolution in action in fourspine sticklebacks. Trends
in Ecology and Evolution. 2025;40(8):728-730. doi:10.1016/j.tree.2025.06.010
apa: Vicoso, B. (2025). Sex chromosome evolution in action in fourspine sticklebacks.
Trends in Ecology and Evolution. Elsevier. https://doi.org/10.1016/j.tree.2025.06.010
chicago: Vicoso, Beatriz. “Sex Chromosome Evolution in Action in Fourspine Sticklebacks.”
Trends in Ecology and Evolution. Elsevier, 2025. https://doi.org/10.1016/j.tree.2025.06.010.
ieee: B. Vicoso, “Sex chromosome evolution in action in fourspine sticklebacks,”
Trends in Ecology and Evolution, vol. 40, no. 8. Elsevier, pp. 728–730,
2025.
ista: Vicoso B. 2025. Sex chromosome evolution in action in fourspine sticklebacks.
Trends in Ecology and Evolution. 40(8), 728–730.
mla: Vicoso, Beatriz. “Sex Chromosome Evolution in Action in Fourspine Sticklebacks.”
Trends in Ecology and Evolution, vol. 40, no. 8, Elsevier, 2025, pp. 728–30,
doi:10.1016/j.tree.2025.06.010.
short: B. Vicoso, Trends in Ecology and Evolution 40 (2025) 728–730.
corr_author: '1'
date_created: 2025-07-13T22:01:23Z
date_published: 2025-08-01T00:00:00Z
date_updated: 2025-12-30T09:22:29Z
day: '01'
ddc:
- '570'
department:
- _id: BeVi
doi: 10.1016/j.tree.2025.06.010
external_id:
isi:
- '001550437400006'
file:
- access_level: open_access
checksum: 0a7c6e8600c878dac7082681e4409b50
content_type: application/pdf
creator: dernst
date_created: 2025-12-30T09:21:14Z
date_updated: 2025-12-30T09:21:14Z
file_id: '20905'
file_name: 2025_TrendsEcoloEvolution_Vicoso.pdf
file_size: 699156
relation: main_file
success: 1
file_date_updated: 2025-12-30T09:21:14Z
has_accepted_license: '1'
intvolume: ' 40'
isi: 1
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 728-730
project:
- _id: 8ed82125-16d5-11f0-9cad-fbcae312235b
grant_number: PAT 8748323
name: Sex chromosomes in evolution and development
publication: Trends in Ecology and Evolution
publication_identifier:
issn:
- 0169-5347
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sex chromosome evolution in action in fourspine sticklebacks
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 40
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20010'
abstract:
- lang: eng
text: Chirality-induced spin selectivity (CISS), which refers to the ability of
chiral molecules to preferentially select spins during electron transfer, has
attracted great attention during the past two decades. However, the theoretical
and experimental understanding of the CISS effect remains preliminary. In this
study, we demonstrate that there is no distinguishable CISS effect in the case
of coherent electron transport through single chiral molecular junctions for a
set of four molecule studied here. Our conclusion is based on statistical evaluations
of thousands of single-molecule junctions across four different molecules with
different origins of chirality measured by the scanning tunneling microscope-based
break-junction technique. The experimental results for all molecules show no dependence
on external magnetic field or chirality in both conductance and current–voltage
measurements. In addition, ab initio Hartree-Fork calculations combined with the
nonequilibrium Green’s function method reveal that the spin–orbit coupling within
chiral junctions bound to a few gold atoms is generally too weak to induce detectable
spin polarizations from spin flipping or spin filtering during the ultrafast electron-transport
time scale. The absence of an observable CISS effect in the coherent electron-transport
regime suggests that the effect may only be found in other electron-transfer regimes
and requires further experimental and theoretical efforts to achieve a comprehensive
understanding.
acknowledgement: 'We thank the National Science Foundation (NSF-DMR 2241180) for supporting
this research. This work was supported in part by the Institute of Science and Technology
Austria. The synthesis of 1R and 1S was supported by the US Air Force Office of
Scientific Research through grant no. FA9550-23-1-0648. The synthesis of 3 was supported
by the Spanish MCIN/AEI/10.13039/501100011033 grant, the European Union Next Generation
EU/PRTR (TED2021-131255B–C43), MCIU/AEI/10.13039/501100011033/FEDER, UE (PID) (PID2023-151167NB-I00),
the Comunidad de Madrid and the Spanish State through the Recovery, Transformation
and Resilience Plan [“Materiales Disruptivos Bidimensionales (2D)” (MAD2D-CM) (UAM1)-MRR
Materiales Avanzados]. IMDEA Nanociencia acknowledges support from the “Severo Ochoa”
Programme for Centres of Excellence in R&D (MINECO, CEX2020-001039 S). M.G.G. acknowledges
MICIU, Spain, for a F.P.U. The work of DRR and AM was supported by the Spin-COntrolled
Chemical Process Engineering (SCOPE) program of the Defense Advanced Research Project
Agency grant HR0011-23-9-0109. Numerical calculations were performed on the Delta
system at the National Center for Supercomputing Applications through allocation
CHE230028 from the Advanced Cyberinfrastructure Coordination Ecosystem: Services
and Support (ACCESS) program, which is supported by National Science Foundation
grants #2138259, #2138286, #2138307, #2137603, and #2138296.'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Liang
full_name: Li, Liang
last_name: Li
- first_name: Wanzhuo
full_name: Shi, Wanzhuo
last_name: Shi
- first_name: Ankit
full_name: Mahajan, Ankit
last_name: Mahajan
- first_name: Junxiang
full_name: Zhang, Junxiang
last_name: Zhang
- first_name: Marta
full_name: Gómez-Gómez, Marta
last_name: Gómez-Gómez
- first_name: Jorge
full_name: Labella, Jorge
last_name: Labella
- first_name: Shayan
full_name: Louie, Shayan
last_name: Louie
- first_name: Tomás
full_name: Torres, Tomás
last_name: Torres
- first_name: Stephen
full_name: Barlow, Stephen
last_name: Barlow
- first_name: Seth R.
full_name: Marder, Seth R.
last_name: Marder
- first_name: David R.
full_name: Reichman, David R.
last_name: Reichman
- first_name: Latha
full_name: Venkataraman, Latha
id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
last_name: Venkataraman
orcid: 0000-0002-6957-6089
citation:
ama: 'Li L, Shi W, Mahajan A, et al. Too fast for spin flipping: Absence of chirality-induced
spin selectivity in coherent electron transport through single-molecule junctions.
Journal of the American Chemical Society. 2025;147(28):25043-25051. doi:10.1021/jacs.5c08517'
apa: 'Li, L., Shi, W., Mahajan, A., Zhang, J., Gómez-Gómez, M., Labella, J., … Venkataraman,
L. (2025). Too fast for spin flipping: Absence of chirality-induced spin selectivity
in coherent electron transport through single-molecule junctions. Journal of
the American Chemical Society. American Chemical Society. https://doi.org/10.1021/jacs.5c08517'
chicago: 'Li, Liang, Wanzhuo Shi, Ankit Mahajan, Junxiang Zhang, Marta Gómez-Gómez,
Jorge Labella, Shayan Louie, et al. “Too Fast for Spin Flipping: Absence of Chirality-Induced
Spin Selectivity in Coherent Electron Transport through Single-Molecule Junctions.”
Journal of the American Chemical Society. American Chemical Society, 2025.
https://doi.org/10.1021/jacs.5c08517.'
ieee: 'L. Li et al., “Too fast for spin flipping: Absence of chirality-induced
spin selectivity in coherent electron transport through single-molecule junctions,”
Journal of the American Chemical Society, vol. 147, no. 28. American Chemical
Society, pp. 25043–25051, 2025.'
ista: 'Li L, Shi W, Mahajan A, Zhang J, Gómez-Gómez M, Labella J, Louie S, Torres
T, Barlow S, Marder SR, Reichman DR, Venkataraman L. 2025. Too fast for spin flipping:
Absence of chirality-induced spin selectivity in coherent electron transport through
single-molecule junctions. Journal of the American Chemical Society. 147(28),
25043–25051.'
mla: 'Li, Liang, et al. “Too Fast for Spin Flipping: Absence of Chirality-Induced
Spin Selectivity in Coherent Electron Transport through Single-Molecule Junctions.”
Journal of the American Chemical Society, vol. 147, no. 28, American Chemical
Society, 2025, pp. 25043–51, doi:10.1021/jacs.5c08517.'
short: L. Li, W. Shi, A. Mahajan, J. Zhang, M. Gómez-Gómez, J. Labella, S. Louie,
T. Torres, S. Barlow, S.R. Marder, D.R. Reichman, L. Venkataraman, Journal of
the American Chemical Society 147 (2025) 25043–25051.
corr_author: '1'
date_created: 2025-07-13T22:01:23Z
date_published: 2025-07-01T00:00:00Z
date_updated: 2025-12-30T09:11:26Z
day: '01'
ddc:
- '540'
department:
- _id: LaVe
doi: 10.1021/jacs.5c08517
external_id:
isi:
- '001522009200001'
file:
- access_level: open_access
checksum: f2bbe7d64de2d0d78aa2be933d12b096
content_type: application/pdf
creator: dernst
date_created: 2025-12-30T09:09:53Z
date_updated: 2025-12-30T09:09:53Z
file_id: '20902'
file_name: 2025_JACS_Li.pdf
file_size: 5524744
relation: main_file
success: 1
file_date_updated: 2025-12-30T09:09:53Z
has_accepted_license: '1'
intvolume: ' 147'
isi: 1
issue: '28'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 25043-25051
publication: Journal of the American Chemical Society
publication_identifier:
eissn:
- 1520-5126
issn:
- 0002-7863
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Too fast for spin flipping: Absence of chirality-induced spin selectivity
in coherent electron transport through single-molecule junctions'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 147
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20011'
abstract:
- lang: eng
text: Heat transport in glasses over a wide temperature range is critical for applications
in gate dielectrics and thermal insulators but remains poorly understood due to
the challenges in modeling vibrational anharmonicity and configurational dynamics
across the glass transition. Recent predictions show an unusual decrease in thermal
conductivity (κ) with temperature in amorphous hafnia (a-HfO2), contrasting with
the typical trend in glasses. Using molecular dynamics with a machine-learning-based
neuroevolution potential, we compute κ of a-HfO2 from 50 K to 2000 K. At low temperatures,
the Wigner transport equation captures both anharmonicity and quantum statistics.
Above 1200 K, atomic diffusion invalidates the quasiparticle picture, and we resort
to the Green–Kubo method to capture convective transport. We further extend the
Wigner transport equation to supercooled a-HfO2, revealing the crucial role of
low-frequency modes in facilitating heat transport. The computed κ, based on both
Green–Kubo and Wigner transport theories, increases continuously with temperature
up to 2000 K.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: We thank Ludovic Berthier for fruitful discussions and Ting Liang
for providing the initial structures of a-SiO2. Z.Z. acknowledges funding from the
European Union’s Horizon 2020 Research and Innovation Programme, under Marie Skłodowska-Curie
grant agreement No. 101034413. The authors also acknowledge the research computing
facilities provided by HPC ISTA and ITS HKU.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Zezhu
full_name: Zeng, Zezhu
id: 54a2c730-803f-11ed-ab7e-95b29d2680e7
last_name: Zeng
orcid: 0000-0001-5126-4928
- first_name: Xia
full_name: Liang, Xia
last_name: Liang
- first_name: Zheyong
full_name: Fan, Zheyong
last_name: Fan
- first_name: Yue
full_name: Chen, Yue
last_name: Chen
- first_name: Michele
full_name: Simoncelli, Michele
last_name: Simoncelli
- first_name: Bingqing
full_name: Cheng, Bingqing
id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
last_name: Cheng
orcid: 0000-0002-3584-9632
citation:
ama: Zeng Z, Liang X, Fan Z, Chen Y, Simoncelli M, Cheng B. Thermal transport of
amorphous hafnia across the glass transition. ACS Materials Letters. 2025:2695-2701.
doi:10.1021/acsmaterialslett.5c00263
apa: Zeng, Z., Liang, X., Fan, Z., Chen, Y., Simoncelli, M., & Cheng, B. (2025).
Thermal transport of amorphous hafnia across the glass transition. ACS Materials
Letters. American Chemical Society. https://doi.org/10.1021/acsmaterialslett.5c00263
chicago: Zeng, Zezhu, Xia Liang, Zheyong Fan, Yue Chen, Michele Simoncelli, and
Bingqing Cheng. “Thermal Transport of Amorphous Hafnia across the Glass Transition.”
ACS Materials Letters. American Chemical Society, 2025. https://doi.org/10.1021/acsmaterialslett.5c00263.
ieee: Z. Zeng, X. Liang, Z. Fan, Y. Chen, M. Simoncelli, and B. Cheng, “Thermal
transport of amorphous hafnia across the glass transition,” ACS Materials Letters.
American Chemical Society, pp. 2695–2701, 2025.
ista: Zeng Z, Liang X, Fan Z, Chen Y, Simoncelli M, Cheng B. 2025. Thermal transport
of amorphous hafnia across the glass transition. ACS Materials Letters., 2695–2701.
mla: Zeng, Zezhu, et al. “Thermal Transport of Amorphous Hafnia across the Glass
Transition.” ACS Materials Letters, American Chemical Society, 2025, pp.
2695–701, doi:10.1021/acsmaterialslett.5c00263.
short: Z. Zeng, X. Liang, Z. Fan, Y. Chen, M. Simoncelli, B. Cheng, ACS Materials
Letters (2025) 2695–2701.
corr_author: '1'
date_created: 2025-07-13T22:01:24Z
date_published: 2025-06-30T00:00:00Z
date_updated: 2025-12-30T09:15:30Z
day: '30'
ddc:
- '530'
department:
- _id: BiCh
doi: 10.1021/acsmaterialslett.5c00263
ec_funded: 1
external_id:
isi:
- '001520226300001'
file:
- access_level: open_access
checksum: d61e63439ddeaef29e9a2ee0f65c4ec1
content_type: application/pdf
creator: dernst
date_created: 2025-12-30T09:13:06Z
date_updated: 2025-12-30T09:13:06Z
file_id: '20903'
file_name: 2025_ACSMaterialsLetters_Zeng.pdf
file_size: 2402059
relation: main_file
success: 1
file_date_updated: 2025-12-30T09:13:06Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 2695-2701
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: ACS Materials Letters
publication_identifier:
eissn:
- 2639-4979
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/ZengZezhu/heat-conductivity-a-HfO2
scopus_import: '1'
status: public
title: Thermal transport of amorphous hafnia across the glass transition
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_type: closed access
_id: '20024'
abstract:
- lang: eng
text: 'Cooperative software verification divides the task of software verification
among several verification tools in order to increase efficiency and effectiveness.
The basic approach is to let verifiers work on different parts of a program and
at the end join verification results. While this idea is intuitively appealing,
cooperative verification is usually hindered by the fact that program decomposition
(1) is often static, disregarding strengths and weaknesses of employed verifiers,
and (2) often represents the decomposed program parts in a specific proprietary
format, thereby making the use of off-the-shelf verifiers in cooperative verification
difficult. In this paper, we propose a novel cooperative verification scheme that
we call dynamic program splitting (DPS). Splitting decomposes programs into (smaller)
programs, and thus directly enables the use of off-the-shelf tools. In DPS, splitting
is dynamically applied on demand: Verification starts by giving a verification
task (a program plus a correctness specification) to a verifier V1. Whenever V1
finds the current task to be hard to verify, it splits the task (i.e., the program)
and restarts verification on subtasks. DPS continues until (1) a violation is
found, (2) all subtasks are completed or (3) some user-defined stopping criterion
is met. In the latter case, the remaining uncompleted subtasks are merged into
a single one and are given to a next verifier V2, repeating the same procedure
on the still unverified program parts. This way, the decomposition is steered
by what is hard to verify for particular verifiers, leveraging their complementary
strengths. We have implemented dynamic program splitting and evaluated it on benchmarks
of the annual software verification competition SV-COMP. The evaluation shows
that cooperative verification with DPS is able to solve verification tasks that
none of the constituent verifiers can solve, without any significant overhead.'
acknowledgement: This work is partially supported by the German Research Foundation
(DFG) – WE2290/13-2 (Coop2), and in part by the ERC-2020-AdG 101020093.
article_processing_charge: No
author:
- first_name: Cedric
full_name: Richter, Cedric
last_name: Richter
- first_name: Marek
full_name: Chalupa, Marek
id: 87e34708-d6c6-11ec-9f5b-9391e7be2463
last_name: Chalupa
- first_name: Marie-Christine
full_name: Jakobs, Marie-Christine
last_name: Jakobs
- first_name: Heike
full_name: Wehrheim, Heike
last_name: Wehrheim
citation:
ama: 'Richter C, Chalupa M, Jakobs M-C, Wehrheim H. Cooperative software verification
via dynamic program splitting. In: 47th International Conference on Software
Engineering. IEEE; 2025:2087-2099. doi:10.1109/ICSE55347.2025.00092'
apa: 'Richter, C., Chalupa, M., Jakobs, M.-C., & Wehrheim, H. (2025). Cooperative
software verification via dynamic program splitting. In 47th International
Conference on Software Engineering (pp. 2087–2099). Ottawa, ON, Canada: IEEE.
https://doi.org/10.1109/ICSE55347.2025.00092'
chicago: Richter, Cedric, Marek Chalupa, Marie-Christine Jakobs, and Heike Wehrheim.
“Cooperative Software Verification via Dynamic Program Splitting.” In 47th
International Conference on Software Engineering, 2087–99. IEEE, 2025. https://doi.org/10.1109/ICSE55347.2025.00092.
ieee: C. Richter, M. Chalupa, M.-C. Jakobs, and H. Wehrheim, “Cooperative software
verification via dynamic program splitting,” in 47th International Conference
on Software Engineering, Ottawa, ON, Canada, 2025, pp. 2087–2099.
ista: 'Richter C, Chalupa M, Jakobs M-C, Wehrheim H. 2025. Cooperative software
verification via dynamic program splitting. 47th International Conference on Software
Engineering. ICSE: International Conference on Software Engineering, 2087–2099.'
mla: Richter, Cedric, et al. “Cooperative Software Verification via Dynamic Program
Splitting.” 47th International Conference on Software Engineering, IEEE,
2025, pp. 2087–99, doi:10.1109/ICSE55347.2025.00092.
short: C. Richter, M. Chalupa, M.-C. Jakobs, H. Wehrheim, in:, 47th International
Conference on Software Engineering, IEEE, 2025, pp. 2087–2099.
conference:
end_date: 2025-05-06
location: Ottawa, ON, Canada
name: 'ICSE: International Conference on Software Engineering'
start_date: 2025-04-26
corr_author: '1'
date_created: 2025-07-16T11:32:29Z
date_published: 2025-05-01T00:00:00Z
date_updated: 2025-09-30T14:01:55Z
day: '01'
department:
- _id: ToHe
doi: 10.1109/ICSE55347.2025.00092
ec_funded: 1
external_id:
isi:
- '001538318100163'
isi: 1
language:
- iso: eng
month: '05'
oa_version: None
page: 2087-2099
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
call_identifier: H2020
grant_number: '101020093'
name: Vigilant Algorithmic Monitoring of Software
publication: 47th International Conference on Software Engineering
publication_identifier:
eissn:
- 1558-1225
isbn:
- '9798331505691'
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cooperative software verification via dynamic program splitting
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '20026'
abstract:
- lang: eng
text: Deep Convective Systems (DCSs) reaching scales of 100–1000 km play a pivotal
role as the primary precipitation source in the tropics. Those systems can have
large cloud shields, and thus not only affect severe precipitation patterns but
also play a crucial part in modulating the tropical radiation budget. Understanding
the complex factors that control how these systems grow and how they will behave
in a warming climate remain fundamental challenges. Research efforts have been
directed, on one hand, towards understanding the environmental control on these
systems, and on the other hand, towards exploring the internal potential of systems
to develop and self-aggregate in idealized simulations. However, we still lack
understanding on the relative role of the environment and internal feedbacks on
DCS mature size and why. The novel high-resolution global SAM simulation from
the DYAMOND project, combined with the TOOCAN Lagrangian tracking of DCSs and
machine learning tools, offers an unprecedented opportunity to explore this question.
We find that a system’s growth rate during the first 2 h of development predicts
its final size with a Pearson correlation coefficient of 0.65. Beyond this period,
growth rate emerges as the strongest predictor. However, in the early stages,
additional factors–such as ice water path heterogeneity, migration distance, interactions
with neighboring systems, and deep shear–play a more significant role. Our study
quantitatively assesses the relative influence of internal versus external factors
on the mature cloud shield size. Our results show that system-intrinsic properties
exert a stronger influence than environmental conditions, suggesting that the
initial environment does not strictly constrain final system size, particularly
for larger systems where internal dynamics dominate.
acknowledgement: C.M. and S.A. gratefully acknowledge funding from the European Research
Council (ERC) under the European Union's Horizon 2020 research and innovation program
(Project CLUSTER, grant agreement 805041), and from the PhD fellowship of Ecole
Normale Supérieure de Paris-Saclay. DYAMOND data management was provided by the
German Climate Computing Center (DKRZ) and supported through the projects ESiWACE
and ESiWACE2. The projects ESiWACE and ESiWACE2 have received funding from the European
Union’s Horizon 2020 research and innovation program under grant agreements No 675191
and 823988. This work used resources of the Deutsches Klimarechenzentrum (DKRZ)
granted by its Scientific Steering Committee (WLA) under project IDs bk1040 and
bb1153. The authors express their gratitude to Sophie Cloché and Eileen Hertwig
for their assistance in data archival at IPSL and DKRZ, respectively. We also thank
Christophe Lampert and Benjamin Fildier for valuable scientific discussions, and
acknowledge the thoughtful comments of two anonymous reviewers.
article_number: '258'
article_processing_charge: Yes
article_type: original
author:
- first_name: Sophie
full_name: Abramian, Sophie
last_name: Abramian
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
- first_name: Camille
full_name: Risi, Camille
last_name: Risi
- first_name: Thomas
full_name: Fiolleau, Thomas
last_name: Fiolleau
- first_name: Rémy
full_name: Roca, Rémy
last_name: Roca
citation:
ama: Abramian S, Muller CJ, Risi C, Fiolleau T, Roca R. How key features of early
development shape deep convective systems. npj Climate and Atmospheric Science.
2025;8. doi:10.1038/s41612-025-01154-1
apa: Abramian, S., Muller, C. J., Risi, C., Fiolleau, T., & Roca, R. (2025).
How key features of early development shape deep convective systems. Npj Climate
and Atmospheric Science. Springer Nature. https://doi.org/10.1038/s41612-025-01154-1
chicago: Abramian, Sophie, Caroline J Muller, Camille Risi, Thomas Fiolleau, and
Rémy Roca. “How Key Features of Early Development Shape Deep Convective Systems.”
Npj Climate and Atmospheric Science. Springer Nature, 2025. https://doi.org/10.1038/s41612-025-01154-1.
ieee: S. Abramian, C. J. Muller, C. Risi, T. Fiolleau, and R. Roca, “How key features
of early development shape deep convective systems,” npj Climate and Atmospheric
Science, vol. 8. Springer Nature, 2025.
ista: Abramian S, Muller CJ, Risi C, Fiolleau T, Roca R. 2025. How key features
of early development shape deep convective systems. npj Climate and Atmospheric
Science. 8, 258.
mla: Abramian, Sophie, et al. “How Key Features of Early Development Shape Deep
Convective Systems.” Npj Climate and Atmospheric Science, vol. 8, 258,
Springer Nature, 2025, doi:10.1038/s41612-025-01154-1.
short: S. Abramian, C.J. Muller, C. Risi, T. Fiolleau, R. Roca, Npj Climate and
Atmospheric Science 8 (2025).
date_created: 2025-07-20T22:01:59Z
date_published: 2025-07-08T00:00:00Z
date_updated: 2025-09-30T14:02:27Z
day: '08'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.1038/s41612-025-01154-1
ec_funded: 1
external_id:
isi:
- '001524244500001'
file:
- access_level: open_access
checksum: 8113405b3e52024b24621ea21d89b3ab
content_type: application/pdf
creator: dernst
date_created: 2025-07-22T06:02:14Z
date_updated: 2025-07-22T06:02:14Z
file_id: '20061'
file_name: 2025_njpClimate_Abramian.pdf
file_size: 3919446
relation: main_file
success: 1
file_date_updated: 2025-07-22T06:02:14Z
has_accepted_license: '1'
intvolume: ' 8'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 629205d8-2b32-11ec-9570-e1356ff73576
call_identifier: H2020
grant_number: '805041'
name: Organization of CLoUdS, and implications of Tropical cyclones and for the
Energetics of the tropics, in current and waRming climate
publication: npj Climate and Atmospheric Science
publication_identifier:
eissn:
- 2397-3722
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: How key features of early development shape deep convective systems
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 8
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20027'
abstract:
- lang: eng
text: "We present the first results of the JWST Emission Line Survey (JELS). Utilizing
the first NIRCam narrow-band imaging at 4.7 μm, over 63 arcmin2 in the PRIMER/COSMOS
field, we have identified 609 emission line galaxy candidates. From these, we
robustly selected 35 H α star-forming galaxies at z ∼ 6.1, with H α star-formation
rates (SFRH α) of ∼ 0.9 − 15 M yr−1.\r\nCombining our unique H α sample with the
exquisite panchromatic data in the field, we explored their physical properties
and star-formation histories, and compared these to a broad-band selected sample
at z ∼ 6 which has offered vital new insights into the nature of high-redshift
galaxies. UV-continuum slopes (β) were considerably redder for our H α sample
(\x04β\x05 ∼ −1.92)\r\ncompared to the broad-band sample (\x04β\x05 ∼ −2.35).
This was not due to dust attenuation as our H α sample was relatively dustpoor
(median AV = 0.23); instead, we argue that the reddened slopes could be due to
nebular continuum. We compared SFRH α and the UV-continuum-derived SFRUV to SED-fitted
measurements averaged over canonical time-scales of 10 and 100 Myr (SFR10 and
SFR100). We found an increase in recent SFR for our sample of H α emitters, particularly
at lower stellar masses (< 109 M). We also found that SFRH α strongly traces SFR
averaged over 10 Myr time-scales, whereas the UV-continuum overpredicts SFR on
100 Myr time-scales at low stellar masses. These results point to our H α sample
undergoing ‘bursty’ star\r\nformation. Our F356W z ∼ 6 sample showed a larger
scatter in SFR10/SFR100 across all stellar masses, which has highlighted how narrow-band
photometric selections of H α emitters are key to quantifying the burstiness of
star-formation activity. "
acknowledgement: "The authors would like to thank Adam Carnall and Joel Leja for their
helpful advice with the SED fitting of our sample, Callum Donnan for his advice
on the selection techniques of high-redshift\r\ngalaxies, Alice Shapley for discussion
around H α SFR calibrations at high-redshift, Fred Jennings for providing insight
into the interpretation of SFR ratios, and the anonymous referee for their helpful
comments – all of which have greatly improved this paper. Several other authors
acknowledge the support of the UK Science and Technology Facilities Council (STFC)
via grants ST/W507441/1 (CAP), ST/V000594/1 (DJM, PNB, RK, and RJM), ST/Y000951/1
(PNB and RK) and ST/X001075/1 (AMS and IRS), and through an Ernest Rutherford Fellowship
(KJD; grant number ST/W003120/1). RKC was funded by support for programme #02321,
provided by\r\nNASA through a grant from the Space Telescope Science Institute,
which is operated by the Association of Universities for Research in Astronomy,
Inc., under NASA contract NAS5-03127. RKC and CLH are both grateful for support
from the Leverhulme Trust via a Leverhulme Early Career Fellowship, and CLH also
acknowledges support from the Oxford Hintze Centre for Astrophysical Surveys which
is funded through generous support from the Hintze Family\r\nCharitable Foundation.
JSD acknowledges the support of the Royal Society via a Royal Society Research Professorship.
EI gratefully acknowledge financialsupport from ANID–MILENIO–NCN2024 112 and ANID
FONDECYT Regular 1221846. LOF acknowledges by ANID BECAS/DOCTORADO NACIONAL 21220499."
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: C. A.
full_name: Pirie, C. A.
last_name: Pirie
- first_name: P. N.
full_name: Best, P. N.
last_name: Best
- first_name: K. J.
full_name: Duncan, K. J.
last_name: Duncan
- first_name: D. J.
full_name: Mcleod, D. J.
last_name: Mcleod
- first_name: R. K.
full_name: Cochrane, R. K.
last_name: Cochrane
- first_name: M.
full_name: Clausen, M.
last_name: Clausen
- first_name: J. S.
full_name: Dunlop, J. S.
last_name: Dunlop
- first_name: S. R.
full_name: Flury, S. R.
last_name: Flury
- first_name: J. E.
full_name: Geach, J. E.
last_name: Geach
- first_name: C. L.
full_name: Hale, C. L.
last_name: Hale
- first_name: E.
full_name: Ibar, E.
last_name: Ibar
- first_name: R.
full_name: Kondapally, R.
last_name: Kondapally
- first_name: Zefeng
full_name: Li, Zefeng
last_name: Li
- first_name: Jorryt J
full_name: Matthee, Jorryt J
id: 7439a258-f3c0-11ec-9501-9df22fe06720
last_name: Matthee
orcid: 0000-0003-2871-127X
- first_name: R. J.
full_name: Mclure, R. J.
last_name: Mclure
- first_name: L.
full_name: Ossa-Fuentes, L.
last_name: Ossa-Fuentes
- first_name: A. L.
full_name: Patrick, A. L.
last_name: Patrick
- first_name: Ian
full_name: Smail, Ian
last_name: Smail
- first_name: D.
full_name: Sobral, D.
last_name: Sobral
- first_name: H. M.O.
full_name: Stephenson, H. M.O.
last_name: Stephenson
- first_name: J. P.
full_name: Stott, J. P.
last_name: Stott
- first_name: A. M.
full_name: Swinbank, A. M.
last_name: Swinbank
citation:
ama: 'Pirie CA, Best PN, Duncan KJ, et al. The JWST Emission Line Survey (JELS):
An untargeted search for H α emission line galaxies at z > 6 and their physical
properties. Monthly Notices of the Royal Astronomical Society. 2025;541(2):1348-1376.
doi:10.1093/mnras/staf1006'
apa: 'Pirie, C. A., Best, P. N., Duncan, K. J., Mcleod, D. J., Cochrane, R. K.,
Clausen, M., … Swinbank, A. M. (2025). The JWST Emission Line Survey (JELS): An
untargeted search for H α emission line galaxies at z > 6 and their physical
properties. Monthly Notices of the Royal Astronomical Society. Oxford University
Press. https://doi.org/10.1093/mnras/staf1006'
chicago: 'Pirie, C. A., P. N. Best, K. J. Duncan, D. J. Mcleod, R. K. Cochrane,
M. Clausen, J. S. Dunlop, et al. “The JWST Emission Line Survey (JELS): An Untargeted
Search for H α Emission Line Galaxies at z > 6 and Their Physical Properties.”
Monthly Notices of the Royal Astronomical Society. Oxford University Press,
2025. https://doi.org/10.1093/mnras/staf1006.'
ieee: 'C. A. Pirie et al., “The JWST Emission Line Survey (JELS): An untargeted
search for H α emission line galaxies at z > 6 and their physical properties,”
Monthly Notices of the Royal Astronomical Society, vol. 541, no. 2. Oxford
University Press, pp. 1348–1376, 2025.'
ista: 'Pirie CA, Best PN, Duncan KJ, Mcleod DJ, Cochrane RK, Clausen M, Dunlop JS,
Flury SR, Geach JE, Hale CL, Ibar E, Kondapally R, Li Z, Matthee JJ, Mclure RJ,
Ossa-Fuentes L, Patrick AL, Smail I, Sobral D, Stephenson HMO, Stott JP, Swinbank
AM. 2025. The JWST Emission Line Survey (JELS): An untargeted search for H α emission
line galaxies at z > 6 and their physical properties. Monthly Notices of the
Royal Astronomical Society. 541(2), 1348–1376.'
mla: 'Pirie, C. A., et al. “The JWST Emission Line Survey (JELS): An Untargeted
Search for H α Emission Line Galaxies at z > 6 and Their Physical Properties.”
Monthly Notices of the Royal Astronomical Society, vol. 541, no. 2, Oxford
University Press, 2025, pp. 1348–76, doi:10.1093/mnras/staf1006.'
short: C.A. Pirie, P.N. Best, K.J. Duncan, D.J. Mcleod, R.K. Cochrane, M. Clausen,
J.S. Dunlop, S.R. Flury, J.E. Geach, C.L. Hale, E. Ibar, R. Kondapally, Z. Li,
J.J. Matthee, R.J. Mclure, L. Ossa-Fuentes, A.L. Patrick, I. Smail, D. Sobral,
H.M.O. Stephenson, J.P. Stott, A.M. Swinbank, Monthly Notices of the Royal Astronomical
Society 541 (2025) 1348–1376.
date_created: 2025-07-20T22:02:00Z
date_published: 2025-08-01T00:00:00Z
date_updated: 2025-09-30T14:03:40Z
day: '01'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.1093/mnras/staf1006
external_id:
arxiv:
- '2410.11808'
isi:
- '001527095600001'
file:
- access_level: open_access
checksum: f8708c78016f8917765026502c6b50b6
content_type: application/pdf
creator: dernst
date_created: 2025-07-22T07:19:20Z
date_updated: 2025-07-22T07:19:20Z
file_id: '20064'
file_name: 2025_MonthlyNoticesRAS_Pirie.pdf
file_size: 38102038
relation: main_file
success: 1
file_date_updated: 2025-07-22T07:19:20Z
has_accepted_license: '1'
intvolume: ' 541'
isi: 1
issue: '2'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 1348-1376
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
eissn:
- 1365-2966
issn:
- 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The JWST Emission Line Survey (JELS): An untargeted search for H α emission
line galaxies at z > 6 and their physical properties'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 541
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20028'
abstract:
- lang: eng
text: We present the JWST Emission-Line Survey (JELS), a JWST imaging programme
exploiting the wavelength coverage and sensitivity of the Near-Infrared Camera
(NIRCam) to extend narrow-band rest-optical emission-line selection into the Epoch
of Reionization (EoR) for the first time, and to enable unique studies of the
resolved ionized gas morphology in individual galaxies across cosmic history.
The primary JELS observations comprise ∼ 4.7 μm narrow-band imaging over ∼ 63
arcmin2 designed to enable selection of H α emitters at z ∼ 6.1 and a host of
novel emission-line samples, including [O III] (z ∼ 8.3) and Paschen α/β (z ∼
1.5/2.8). For the F466N/F470N narrow-band observations, the emission-line sensitivities
achieved are up to ∼ 2× more sensitive than current slitless spectroscopy surveys
(5σ limits of 0.8–1.2×10−18 erg s−1cm−2), corresponding to unobscured H α star
formation rates (SFRs) of 0.9–1.3 M yr−1 at z ∼ 6.1, extending emission-line selections
in the EoR to fainter populations. Simultaneously, JELS also adds F200W broad-band
and F212N narrow-band imaging (H α at z ∼ 2.23) that probes SFRs 5× fainter than
previous ground-based narrow-band studies (∼ 0.2 M yr−1), offering an unprecedented
resolved view of star formation at cosmic noon. We present the detailed JELS design,
key data processing steps specific to the survey observations, and demonstrate
the exceptional data quality and imaging sensitivity achieved. We then summarize
the key scientific goals of JELS, demonstrate the precision and accuracy of the
expected redshift and measured emission-line recovery through detailed simulations,
and present examples of spectroscopically confirmed H α and [O III] emitters discovered
by JELS that illustrate the novel parameter space probed.
acknowledgement: "We thank the anonymous referee for their helpful and constructive
feedback that hassignificantly improved this manuscript. The authors also thank
DavidCoulter and ArminRestfor allowing the inclusion of JELS targets in their director’s
discretionary observing programme. KJD acknowledges support from the Science and
Technology Facilities Council (STFC) through an Ernest Rutherford Fellowship (grant
number ST/W003120/1). DJM, PNB, RK, and RJM acknowledge the support of the UK STFC
via grant ST/V000594/1. PNB and RK are grateful for support from the UK STFC via
grant ST/Y000951/1. RKC was funded by support for programme #02321, provided by
NASA through a grant from the Space Telescope Science Institute,\r\nwhich is operated
by the Association of Universities for Research in Astronomy, Inc., under NASA contract
NAS5-03127. RKC is grateful for support from the Leverhulme Trust via the Leverhulme
Early Career Fellowship.JSD acknowledgesthe support of the Royal Society via a Royal
Society Research Professorship. CLH acknowledges support from the Leverhulme Trust
through an Early Career Research Fellowship and also acknowledge support from the
Oxford\r\nHintze Centre for Astrophysical Surveys which is funded through generous
support from the Hintze Family Charitable Foundation. EI gratefully acknowledge
financial support from ANID –MILENIO – NCN2024 112 and ANID FONDECYT Regular 1221846.
AMS and IRS acknowledge support from the STFC via grant ST/X001075/1.This work was
initiated in part at Aspen Center for Physics, which is supported by National Science
Foundation grant PHY-2210452."
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: K. J.
full_name: Duncan, K. J.
last_name: Duncan
- first_name: D. J.
full_name: Mcleod, D. J.
last_name: Mcleod
- first_name: P. N.
full_name: Best, P. N.
last_name: Best
- first_name: C. A.
full_name: Pirie, C. A.
last_name: Pirie
- first_name: M.
full_name: Clausen, M.
last_name: Clausen
- first_name: R. K.
full_name: Cochrane, R. K.
last_name: Cochrane
- first_name: J. S.
full_name: Dunlop, J. S.
last_name: Dunlop
- first_name: S. R.
full_name: Flury, S. R.
last_name: Flury
- first_name: J. E.
full_name: Geach, J. E.
last_name: Geach
- first_name: N. A.
full_name: Grogin, N. A.
last_name: Grogin
- first_name: C. L.
full_name: Hale, C. L.
last_name: Hale
- first_name: E.
full_name: Ibar, E.
last_name: Ibar
- first_name: R.
full_name: Kondapally, R.
last_name: Kondapally
- first_name: Zefeng
full_name: Li, Zefeng
last_name: Li
- first_name: Jorryt J
full_name: Matthee, Jorryt J
id: 7439a258-f3c0-11ec-9501-9df22fe06720
last_name: Matthee
orcid: 0000-0003-2871-127X
- first_name: R. J.
full_name: Mclure, R. J.
last_name: Mclure
- first_name: Luis
full_name: Ossa-Fuentes, Luis
last_name: Ossa-Fuentes
- first_name: A. L.
full_name: Patrick, A. L.
last_name: Patrick
- first_name: Ian
full_name: Smail, Ian
last_name: Smail
- first_name: D.
full_name: Sobral, D.
last_name: Sobral
- first_name: H. M.O.
full_name: Stephenson, H. M.O.
last_name: Stephenson
- first_name: J. P.
full_name: Stott, J. P.
last_name: Stott
- first_name: A. M.
full_name: Swinbank, A. M.
last_name: Swinbank
citation:
ama: 'Duncan KJ, Mcleod DJ, Best PN, et al. The JWST Emission-Line Survey: Extending
rest-optical narrow-band emission-line selection into the Epoch of Reionization.
Monthly Notices of the Royal Astronomical Society. 2025;541(2):1329-1347.
doi:10.1093/mnras/staf1061'
apa: 'Duncan, K. J., Mcleod, D. J., Best, P. N., Pirie, C. A., Clausen, M., Cochrane,
R. K., … Swinbank, A. M. (2025). The JWST Emission-Line Survey: Extending rest-optical
narrow-band emission-line selection into the Epoch of Reionization. Monthly
Notices of the Royal Astronomical Society. Oxford University Press. https://doi.org/10.1093/mnras/staf1061'
chicago: 'Duncan, K. J., D. J. Mcleod, P. N. Best, C. A. Pirie, M. Clausen, R. K.
Cochrane, J. S. Dunlop, et al. “The JWST Emission-Line Survey: Extending Rest-Optical
Narrow-Band Emission-Line Selection into the Epoch of Reionization.” Monthly
Notices of the Royal Astronomical Society. Oxford University Press, 2025.
https://doi.org/10.1093/mnras/staf1061.'
ieee: 'K. J. Duncan et al., “The JWST Emission-Line Survey: Extending rest-optical
narrow-band emission-line selection into the Epoch of Reionization,” Monthly
Notices of the Royal Astronomical Society, vol. 541, no. 2. Oxford University
Press, pp. 1329–1347, 2025.'
ista: 'Duncan KJ, Mcleod DJ, Best PN, Pirie CA, Clausen M, Cochrane RK, Dunlop JS,
Flury SR, Geach JE, Grogin NA, Hale CL, Ibar E, Kondapally R, Li Z, Matthee JJ,
Mclure RJ, Ossa-Fuentes L, Patrick AL, Smail I, Sobral D, Stephenson HMO, Stott
JP, Swinbank AM. 2025. The JWST Emission-Line Survey: Extending rest-optical narrow-band
emission-line selection into the Epoch of Reionization. Monthly Notices of the
Royal Astronomical Society. 541(2), 1329–1347.'
mla: 'Duncan, K. J., et al. “The JWST Emission-Line Survey: Extending Rest-Optical
Narrow-Band Emission-Line Selection into the Epoch of Reionization.” Monthly
Notices of the Royal Astronomical Society, vol. 541, no. 2, Oxford University
Press, 2025, pp. 1329–47, doi:10.1093/mnras/staf1061.'
short: K.J. Duncan, D.J. Mcleod, P.N. Best, C.A. Pirie, M. Clausen, R.K. Cochrane,
J.S. Dunlop, S.R. Flury, J.E. Geach, N.A. Grogin, C.L. Hale, E. Ibar, R. Kondapally,
Z. Li, J.J. Matthee, R.J. Mclure, L. Ossa-Fuentes, A.L. Patrick, I. Smail, D.
Sobral, H.M.O. Stephenson, J.P. Stott, A.M. Swinbank, Monthly Notices of the Royal
Astronomical Society 541 (2025) 1329–1347.
date_created: 2025-07-20T22:02:00Z
date_published: 2025-08-01T00:00:00Z
date_updated: 2025-09-30T14:03:01Z
day: '01'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.1093/mnras/staf1061
external_id:
arxiv:
- '2410.09000'
isi:
- '001527085900001'
file:
- access_level: open_access
checksum: abedbbce98d448f374dc922dad9133fc
content_type: application/pdf
creator: dernst
date_created: 2025-07-22T07:02:02Z
date_updated: 2025-07-22T07:02:02Z
file_id: '20063'
file_name: 2025_MonthlyNoticesRAS_Duncan.pdf
file_size: 4451937
relation: main_file
success: 1
file_date_updated: 2025-07-22T07:02:02Z
has_accepted_license: '1'
intvolume: ' 541'
isi: 1
issue: '2'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 1329-1347
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
eissn:
- 1365-2966
issn:
- 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The JWST Emission-Line Survey: Extending rest-optical narrow-band emission-line
selection into the Epoch of Reionization'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 541
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20029'
abstract:
- lang: eng
text: Vacuolar acidification is crucial for the homeostasis of intracellular pH
and the recycling of proteins and nutrients in cells, thereby playing important
roles in various physiological processes related to vacuolar function. The key
factors regulating vacuolar acidification and underlying mechanisms remain unclear.
Here, we report that Arabidopsis phospholipase Dζ2 (PLDζ2) promotes the acidification
of the vacuolar lumen to stimulate autophagic degradation under phosphorus deficiency.
The pldζ2 mutant massively accumulates autophagic structures while exhibiting
premature leaf senescence under nutrient starvation. Impaired autophagic flux,
lytic vacuole morphology, and lytic degradation in pldζ2 indicate that PLDζ2 regulates
autophagy by affecting the vacuolar function. PLDζ2 locates in both tonoplast
and cytoplasm. Genetic, structural, and biochemical studies demonstrate that PLDζ2
directly interacts with vacuolar-type ATPase (V-ATPase) subunit D (VATD) to promote
vacuolar acidification and autophagy under phosphorus starvation. These findings
reveal the importance of V-ATPase and vacuolar pH in autophagic activity and provide
clues in elucidating the regulatory mechanism of vacuolar acidification.
acknowledgement: The study was supported by National Natural Science Foundation of
China (NSFC, 92354301, 32230011, 32200274, and 91954206). The computations were
run on the Siyuan-1 cluster supported by the Center for High-Performance Computing
at Shanghai Jiao Tong University.
article_number: '116024'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Bin
full_name: Guan, Bin
id: 56aad729-cca2-11ed-a45a-9b4138991a48
last_name: Guan
- first_name: Ke Xuan
full_name: Xie, Ke Xuan
last_name: Xie
- first_name: Xin Qiao
full_name: Du, Xin Qiao
last_name: Du
- first_name: Yu Xuan
full_name: Bai, Yu Xuan
last_name: Bai
- first_name: Peng Chao
full_name: Hao, Peng Chao
last_name: Hao
- first_name: Wen Hui
full_name: Lin, Wen Hui
last_name: Lin
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Hong Wei
full_name: Xue, Hong Wei
last_name: Xue
citation:
ama: Guan B, Xie KX, Du XQ, et al. Arabidopsis phospholipase Dζ2 facilitates vacuolar
acidification and autophagy under phosphorus starvation by interacting with VATD.
Cell Reports. 2025;44(7). doi:10.1016/j.celrep.2025.116024
apa: Guan, B., Xie, K. X., Du, X. Q., Bai, Y. X., Hao, P. C., Lin, W. H., … Xue,
H. W. (2025). Arabidopsis phospholipase Dζ2 facilitates vacuolar acidification
and autophagy under phosphorus starvation by interacting with VATD. Cell Reports.
Elsevier. https://doi.org/10.1016/j.celrep.2025.116024
chicago: Guan, Bin, Ke Xuan Xie, Xin Qiao Du, Yu Xuan Bai, Peng Chao Hao, Wen Hui
Lin, Jiří Friml, and Hong Wei Xue. “Arabidopsis Phospholipase Dζ2 Facilitates
Vacuolar Acidification and Autophagy under Phosphorus Starvation by Interacting
with VATD.” Cell Reports. Elsevier, 2025. https://doi.org/10.1016/j.celrep.2025.116024.
ieee: B. Guan et al., “Arabidopsis phospholipase Dζ2 facilitates vacuolar
acidification and autophagy under phosphorus starvation by interacting with VATD,”
Cell Reports, vol. 44, no. 7. Elsevier, 2025.
ista: Guan B, Xie KX, Du XQ, Bai YX, Hao PC, Lin WH, Friml J, Xue HW. 2025. Arabidopsis
phospholipase Dζ2 facilitates vacuolar acidification and autophagy under phosphorus
starvation by interacting with VATD. Cell Reports. 44(7), 116024.
mla: Guan, Bin, et al. “Arabidopsis Phospholipase Dζ2 Facilitates Vacuolar Acidification
and Autophagy under Phosphorus Starvation by Interacting with VATD.” Cell Reports,
vol. 44, no. 7, 116024, Elsevier, 2025, doi:10.1016/j.celrep.2025.116024.
short: B. Guan, K.X. Xie, X.Q. Du, Y.X. Bai, P.C. Hao, W.H. Lin, J. Friml, H.W.
Xue, Cell Reports 44 (2025).
date_created: 2025-07-20T22:02:01Z
date_published: 2025-07-22T00:00:00Z
date_updated: 2025-09-30T14:05:28Z
day: '22'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.celrep.2025.116024
external_id:
isi:
- '001533244800001'
pmid:
- '40668679'
file:
- access_level: open_access
checksum: ee03deee47a084b0295251dc49470ad4
content_type: application/pdf
creator: dernst
date_created: 2025-07-22T08:52:17Z
date_updated: 2025-07-22T08:52:17Z
file_id: '20067'
file_name: 2025_CellReports_Guan.pdf
file_size: 37708120
relation: main_file
success: 1
file_date_updated: 2025-07-22T08:52:17Z
has_accepted_license: '1'
intvolume: ' 44'
isi: 1
issue: '7'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Cell Reports
publication_identifier:
eissn:
- 2211-1247
issn:
- 2639-1856
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Arabidopsis phospholipase Dζ2 facilitates vacuolar acidification and autophagy
under phosphorus starvation by interacting with VATD
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 44
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20030'
abstract:
- lang: eng
text: We report the discovery of a Lyα emitter (LAE) candidate in the immediate
foreground of the quasar PSO J158-14 at zQSO = 6.0685 at a projected distance
∼29 pkpc that is associated with an extremely metal-poor absorption system. This
system was found in archival observations of the quasar field with the Very Large
Telescope (VLT)/Multi-Unit Spectroscopic Explorer (MUSE) and was previously missed
in searches of absorption systems using quasar absorption line spectroscopy, as
it imparts no detectable metal absorption lines on the background quasar spectrum.
The detected Lyα emission line at a redshift of zLAE = 6.0323 is well aligned
with the outer edge of the quasar’s proximity zone and can plausibly cause its
observed damping wing if it is associated with a proximate subdamped Lyα absorption
system with a column density of log Nhi/cm^-2 19.7. A >10 hr medium-resolution
spectrum of the quasar observed with the Magellan/Folded-port InfraRed Echellette
(FIRE) and VLT/X-Shooter spectrographs reveals a metallicity constraint of [Z/H]
< −3. Such low metallicity makes this system an extremely metal-poor galaxy candidate
and provides an exciting site to study possible signatures of Population III stars.
acknowledgement: "We thank the referee for the feedback and suggestions that greatly
improved the quality of this manuscript. We would like to thank Carlos Contreras,
Matías Díaz, Carla Fuentes, Mauricio Martínez, Alberto Pastén, Roger Leiton, Hugo
Rivera, and Gabriel Prieto for their help and support during the Magellan/FIRE observations.
We would also like to thank Rongmon Bordoloi for helpful discussions. R.A.M. acknowledges
support from the Swiss National Science Foundation (SNSF) through project grant
200020_207349. This Letter includes data gathered with the 6.5 m Magellan Telescopes
located at Las Campanas Observatory, Chile.\r\nBased on observations collected at
the European Southern Observatory under ESO programs 106.215A and 096.A-0418.\r\n\r\nThe
HST data presented in this Letter were obtained from the Mikulski Archive for Space
Telescopes (MAST) at the Space Telescope Science Institute. The observations analyzed
in this work can be accessed via doi:10.17909/gxmz-zd87."
article_number: L33
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Dominika
full_name: Ďurovčíková, Dominika
last_name: Ďurovčíková
- first_name: Anna Christina
full_name: Eilers, Anna Christina
last_name: Eilers
- first_name: Robert A.
full_name: Simcoe, Robert A.
last_name: Simcoe
- first_name: Louise
full_name: Welsh, Louise
last_name: Welsh
- first_name: Romain A.
full_name: Meyer, Romain A.
last_name: Meyer
- first_name: Jorryt J
full_name: Matthee, Jorryt J
id: 7439a258-f3c0-11ec-9501-9df22fe06720
last_name: Matthee
orcid: 0000-0003-2871-127X
- first_name: Emma V.
full_name: Ryan-Weber, Emma V.
last_name: Ryan-Weber
- first_name: Minghao
full_name: Yue, Minghao
last_name: Yue
- first_name: Harley
full_name: Katz, Harley
last_name: Katz
- first_name: Sindhu
full_name: Satyavolu, Sindhu
last_name: Satyavolu
- first_name: George
full_name: Becker, George
last_name: Becker
- first_name: Frederick B.
full_name: Davies, Frederick B.
last_name: Davies
- first_name: Emanuele Paolo
full_name: Farina, Emanuele Paolo
last_name: Farina
citation:
ama: Ďurovčíková D, Eilers AC, Simcoe RA, et al. An extremely metal-poor Lyα emitter
candidate at z = 6 revealed through absorption spectroscopy. The Astrophysical
Journal Letters. 2025;987(2). doi:10.3847/2041-8213/ade71c
apa: Ďurovčíková, D., Eilers, A. C., Simcoe, R. A., Welsh, L., Meyer, R. A., Matthee,
J. J., … Farina, E. P. (2025). An extremely metal-poor Lyα emitter candidate at
z = 6 revealed through absorption spectroscopy. The Astrophysical Journal Letters.
IOP Publishing. https://doi.org/10.3847/2041-8213/ade71c
chicago: Ďurovčíková, Dominika, Anna Christina Eilers, Robert A. Simcoe, Louise
Welsh, Romain A. Meyer, Jorryt J Matthee, Emma V. Ryan-Weber, et al. “An Extremely
Metal-Poor Lyα Emitter Candidate at z = 6 Revealed through Absorption Spectroscopy.”
The Astrophysical Journal Letters. IOP Publishing, 2025. https://doi.org/10.3847/2041-8213/ade71c.
ieee: D. Ďurovčíková et al., “An extremely metal-poor Lyα emitter candidate
at z = 6 revealed through absorption spectroscopy,” The Astrophysical Journal
Letters, vol. 987, no. 2. IOP Publishing, 2025.
ista: Ďurovčíková D, Eilers AC, Simcoe RA, Welsh L, Meyer RA, Matthee JJ, Ryan-Weber
EV, Yue M, Katz H, Satyavolu S, Becker G, Davies FB, Farina EP. 2025. An extremely
metal-poor Lyα emitter candidate at z = 6 revealed through absorption spectroscopy.
The Astrophysical Journal Letters. 987(2), L33.
mla: Ďurovčíková, Dominika, et al. “An Extremely Metal-Poor Lyα Emitter Candidate
at z = 6 Revealed through Absorption Spectroscopy.” The Astrophysical Journal
Letters, vol. 987, no. 2, L33, IOP Publishing, 2025, doi:10.3847/2041-8213/ade71c.
short: D. Ďurovčíková, A.C. Eilers, R.A. Simcoe, L. Welsh, R.A. Meyer, J.J. Matthee,
E.V. Ryan-Weber, M. Yue, H. Katz, S. Satyavolu, G. Becker, F.B. Davies, E.P. Farina,
The Astrophysical Journal Letters 987 (2025).
date_created: 2025-07-20T22:02:01Z
date_published: 2025-07-10T00:00:00Z
date_updated: 2026-02-16T12:44:23Z
day: '10'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.3847/2041-8213/ade71c
external_id:
arxiv:
- '2505.01499'
isi:
- '001524847100001'
file:
- access_level: open_access
checksum: 75d0c08514209fc6e3078fdec8e815a2
content_type: application/pdf
creator: dernst
date_created: 2025-07-22T08:38:14Z
date_updated: 2025-07-22T08:38:14Z
file_id: '20066'
file_name: 2025_AstrophysicalJourLetters_Durovcikova.pdf
file_size: 6453728
relation: main_file
success: 1
file_date_updated: 2025-07-22T08:38:14Z
has_accepted_license: '1'
intvolume: ' 987'
isi: 1
issue: '2'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal Letters
publication_identifier:
eissn:
- 2041-8213
issn:
- 2041-8205
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: An extremely metal-poor Lyα emitter candidate at z = 6 revealed through absorption
spectroscopy
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 987
year: '2025'
...
---
OA_type: closed access
_id: '20031'
abstract:
- lang: eng
text: The central vacuole is a multifunctional organelle with the most significant
occupancy in a differentiated plant cell. Plants depend on the function of the
vacuole for critical development, growth, and environmental responses. As the
cell expands, the vacuole changes shape and size, increasing its membrane and
luminal content. The set of these events is called the vacuolar configuration
process, which has not been well described. Our research highlights the impact
of plasma membrane internalization on vacuole morphology during the vacuolar configuration
process. We observed a direct correlation between differential endocytosis rates
and the enrichment of vacuolar membranous structures. Chemical and genetic interference
with clathrin-mediated endocytosis (CME) revealed that it is required for the
vacuolar configuration of growing root cells. The contribution of CME to the vacuole
configuration process co-occurs with the induction of post-trans-Golgi network
(TGN)/early endosome (EE) trafficking with the participation of the Rab GTPases
ARA6 and ARA7. Our results show that the CME plays an active role during vacuole
configuration, most probably carrying the material that allows the establishment
of the vacuole in elongating cells. Since membrane trafficking through the EE/TGN
is required to reach the vacuole, additional players must be defined.
acknowledgement: "This research was supported by FONDECYT grants 1170950 and 1211311
and by ANID PhD fellowship 2020-21201663 to PhD student CO-N. The microscopes used
in this work were funded by grants FONDEQUIP #EQM 140019 and #EQM12-0003 at the
Advanced Microscopy Unit of the Biology Department, Faculty of Science, University
of Chile.\r\nWe thank Jiri Friml for donating the XVE»AUXILIN-LIKE2 (AX2) line to
support our research. We wish to acknowledge the active and helpful discussion of
all the members of the LNM team and the Plant Molecular Biology Centre at Universidad
de Chile."
article_processing_charge: No
article_type: original
author:
- first_name: Claudio
full_name: Osorio-Navarro, Claudio
last_name: Osorio-Navarro
- first_name: Gabriel
full_name: Neira-Valenzuela, Gabriel
last_name: Neira-Valenzuela
- first_name: Paula
full_name: Sierra, Paula
last_name: Sierra
- first_name: Maciek
full_name: Adamowski, Maciek
id: 45F536D2-F248-11E8-B48F-1D18A9856A87
last_name: Adamowski
orcid: 0000-0001-6463-5257
- first_name: Jorge
full_name: Toledo, Jorge
last_name: Toledo
- first_name: Lorena
full_name: Norambuena, Lorena
last_name: Norambuena
citation:
ama: Osorio-Navarro C, Neira-Valenzuela G, Sierra P, Adamowski M, Toledo J, Norambuena
L. The configuration of the vacuole is driven by clathrin-mediated trafficking
in root cells of Arabidopsis thaliana. Journal of Experimental Botany.
2025;76(10):2700-2714. doi:10.1093/jxb/eraf084
apa: Osorio-Navarro, C., Neira-Valenzuela, G., Sierra, P., Adamowski, M., Toledo,
J., & Norambuena, L. (2025). The configuration of the vacuole is driven by
clathrin-mediated trafficking in root cells of Arabidopsis thaliana. Journal
of Experimental Botany. Oxford University Press. https://doi.org/10.1093/jxb/eraf084
chicago: Osorio-Navarro, Claudio, Gabriel Neira-Valenzuela, Paula Sierra, Maciek
Adamowski, Jorge Toledo, and Lorena Norambuena. “The Configuration of the Vacuole
Is Driven by Clathrin-Mediated Trafficking in Root Cells of Arabidopsis Thaliana.”
Journal of Experimental Botany. Oxford University Press, 2025. https://doi.org/10.1093/jxb/eraf084.
ieee: C. Osorio-Navarro, G. Neira-Valenzuela, P. Sierra, M. Adamowski, J. Toledo,
and L. Norambuena, “The configuration of the vacuole is driven by clathrin-mediated
trafficking in root cells of Arabidopsis thaliana,” Journal of Experimental
Botany, vol. 76, no. 10. Oxford University Press, pp. 2700–2714, 2025.
ista: Osorio-Navarro C, Neira-Valenzuela G, Sierra P, Adamowski M, Toledo J, Norambuena
L. 2025. The configuration of the vacuole is driven by clathrin-mediated trafficking
in root cells of Arabidopsis thaliana. Journal of Experimental Botany. 76(10),
2700–2714.
mla: Osorio-Navarro, Claudio, et al. “The Configuration of the Vacuole Is Driven
by Clathrin-Mediated Trafficking in Root Cells of Arabidopsis Thaliana.” Journal
of Experimental Botany, vol. 76, no. 10, Oxford University Press, 2025, pp.
2700–14, doi:10.1093/jxb/eraf084.
short: C. Osorio-Navarro, G. Neira-Valenzuela, P. Sierra, M. Adamowski, J. Toledo,
L. Norambuena, Journal of Experimental Botany 76 (2025) 2700–2714.
date_created: 2025-07-20T22:02:01Z
date_published: 2025-07-02T00:00:00Z
date_updated: 2025-09-30T14:04:16Z
day: '02'
department:
- _id: JiFr
doi: 10.1093/jxb/eraf084
external_id:
isi:
- '001482869200001'
pmid:
- '40056424'
intvolume: ' 76'
isi: 1
issue: '10'
language:
- iso: eng
month: '07'
oa_version: None
page: 2700-2714
pmid: 1
publication: Journal of Experimental Botany
publication_identifier:
eissn:
- 1460-2431
issn:
- 0022-0957
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: The configuration of the vacuole is driven by clathrin-mediated trafficking
in root cells of Arabidopsis thaliana
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 76
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
_id: '20032'
abstract:
- lang: eng
text: We propose Scalable Mechanistic Neural Network (S-MNN), an enhanced neural
network framework designed for scientific machine learning applications involving
long temporal sequences. By reformulating the original Mechanistic Neural Network
(MNN) (Pervez et al., 2024), we reduce the computational time and space complexities
from cubic and quadratic with respect to the sequence length, respectively, to
linear. This significant improvement enables efficient modeling of long-term dynamics
without sacrificing accuracy or interpretability. Extensive experiments demonstrate
that S-MNN matches the original MNN in precision while substantially reducing
computational resources. Consequently, S-MNN can drop-in replace the original
MNN in applications, providing a practical and efficient tool for integrating
mechanistic bottlenecks into neural network models of complex dynamical systems.
Source code is available at https://github.com/IST-DASLab/ScalableMNN.
article_processing_charge: No
arxiv: 1
author:
- first_name: Jiale
full_name: Chen, Jiale
id: 4d0a9064-1ff6-11ee-9fa6-ec046c604785
last_name: Chen
orcid: 0000-0001-5337-5875
- first_name: Dingling
full_name: Yao, Dingling
id: d3e02e50-48a8-11ee-8f62-c108061797fa
last_name: Yao
- first_name: Adeel A
full_name: Pervez, Adeel A
id: fca6d90c-d47f-11ee-bc87-93ff51604981
last_name: Pervez
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
- first_name: Francesco
full_name: Locatello, Francesco
id: 26cfd52f-2483-11ee-8040-88983bcc06d4
last_name: Locatello
orcid: 0000-0002-4850-0683
citation:
ama: 'Chen J, Yao D, Pervez AA, Alistarh D-A, Locatello F. Scalable mechanistic
neural networks. In: 13th International Conference on Learning Representations.
ICLR; 2025:63716-63737.'
apa: 'Chen, J., Yao, D., Pervez, A. A., Alistarh, D.-A., & Locatello, F. (2025).
Scalable mechanistic neural networks. In 13th International Conference on Learning
Representations (pp. 63716–63737). Singapore, Singapore: ICLR.'
chicago: Chen, Jiale, Dingling Yao, Adeel A Pervez, Dan-Adrian Alistarh, and Francesco
Locatello. “Scalable Mechanistic Neural Networks.” In 13th International Conference
on Learning Representations, 63716–37. ICLR, 2025.
ieee: J. Chen, D. Yao, A. A. Pervez, D.-A. Alistarh, and F. Locatello, “Scalable
mechanistic neural networks,” in 13th International Conference on Learning
Representations, Singapore, Singapore, 2025, pp. 63716–63737.
ista: 'Chen J, Yao D, Pervez AA, Alistarh D-A, Locatello F. 2025. Scalable mechanistic
neural networks. 13th International Conference on Learning Representations. ICLR:
International Conference on Learning Representations, 63716–63737.'
mla: Chen, Jiale, et al. “Scalable Mechanistic Neural Networks.” 13th International
Conference on Learning Representations, ICLR, 2025, pp. 63716–37.
short: J. Chen, D. Yao, A.A. Pervez, D.-A. Alistarh, F. Locatello, in:, 13th International
Conference on Learning Representations, ICLR, 2025, pp. 63716–63737.
conference:
end_date: 2025-04-28
location: Singapore, Singapore
name: 'ICLR: International Conference on Learning Representations'
start_date: 2025-04-24
corr_author: '1'
date_created: 2025-07-20T22:02:01Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-08-04T08:03:11Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
- _id: FrLo
external_id:
arxiv:
- '2410.06074'
file:
- access_level: open_access
checksum: 64cfdb12ae3e4e8ba57b1403e1066776
content_type: application/pdf
creator: dernst
date_created: 2025-07-22T07:58:22Z
date_updated: 2025-07-22T07:58:22Z
file_id: '20065'
file_name: 2025_ICLR_Chen.pdf
file_size: 732745
relation: main_file
success: 1
file_date_updated: 2025-07-22T07:58:22Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 63716-63737
publication: 13th International Conference on Learning Representations
publication_identifier:
isbn:
- '9798331320850'
publication_status: published
publisher: ICLR
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/IST-DASLab/ScalableMNN
scopus_import: '1'
status: public
title: Scalable mechanistic neural networks
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
_id: '20033'
abstract:
- lang: eng
text: 'A growing number of machine learning scenarios rely on knowledge distillation
where one uses the output of a surrogate model as labels to supervise the training
of a target model. In this work, we provide a sharp characterization of this process
for ridgeless, high-dimensional regression, under two settings: (i) model shift,
where the surrogate model is arbitrary, and (ii) distribution shift, where the
surrogate model is the solution of empirical risk minimization with out-of-distribution
data. In both cases, we characterize the precise risk of the target model through
non-asymptotic bounds in terms of sample size and data distribution under mild
conditions. As a consequence, we identify the form of the optimal surrogate model,
which reveals the benefits and limitations of discarding weak features in a data-dependent
fashion. In the context of weak-to-strong (W2S) generalization, this has the interpretation
that (i) W2S training, with the surrogate as the weak model, can provably outperform
training with strong labels under the same data budget, but (ii) it is unable
to improve the data scaling law. We validate our results on numerical experiments
both on ridgeless regression and on neural network architectures.'
acknowledgement: M.E.I., H.A.G., E.O.T., S.O. are supported by the NSF grants CCF-2046816,
CCF-2403075, the Office of Naval Research grant N000142412289, an OpenAI Agentic
AI Systems grant, and gifts by Open Philanthropy and Google Research. M. M. is funded
by the European Union (ERC, INF2, project number 101161364). Views and opinions
expressed are however those of the author(s) only and do not necessarily reflect
those of the European Union or the European Research Council Executive Agency. Neither
the European Union nor the granting authority can be held responsible for them.
article_processing_charge: No
arxiv: 1
author:
- first_name: M.
full_name: Emrullah Ildiz, M.
last_name: Emrullah Ildiz
- first_name: Halil Alperen
full_name: Gozeten, Halil Alperen
last_name: Gozeten
- first_name: Ege Onur
full_name: Taga, Ege Onur
last_name: Taga
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
- first_name: Samet
full_name: Oymak, Samet
last_name: Oymak
citation:
ama: 'Emrullah Ildiz M, Gozeten HA, Taga EO, Mondelli M, Oymak S. High-dimensional
analysis of knowledge distillation: Weak-to-Strong generalization and scaling
laws. In: 13th International Conference on Learning Representations. ICLR;
2025:2967-3006.'
apa: 'Emrullah Ildiz, M., Gozeten, H. A., Taga, E. O., Mondelli, M., & Oymak,
S. (2025). High-dimensional analysis of knowledge distillation: Weak-to-Strong
generalization and scaling laws. In 13th International Conference on Learning
Representations (pp. 2967–3006). Singapore, Singapore: ICLR.'
chicago: 'Emrullah Ildiz, M., Halil Alperen Gozeten, Ege Onur Taga, Marco Mondelli,
and Samet Oymak. “High-Dimensional Analysis of Knowledge Distillation: Weak-to-Strong
Generalization and Scaling Laws.” In 13th International Conference on Learning
Representations, 2967–3006. ICLR, 2025.'
ieee: 'M. Emrullah Ildiz, H. A. Gozeten, E. O. Taga, M. Mondelli, and S. Oymak,
“High-dimensional analysis of knowledge distillation: Weak-to-Strong generalization
and scaling laws,” in 13th International Conference on Learning Representations,
Singapore, Singapore, 2025, pp. 2967–3006.'
ista: 'Emrullah Ildiz M, Gozeten HA, Taga EO, Mondelli M, Oymak S. 2025. High-dimensional
analysis of knowledge distillation: Weak-to-Strong generalization and scaling
laws. 13th International Conference on Learning Representations. ICLR: International
Conference on Learning Representations, 2967–3006.'
mla: 'Emrullah Ildiz, M., et al. “High-Dimensional Analysis of Knowledge Distillation:
Weak-to-Strong Generalization and Scaling Laws.” 13th International Conference
on Learning Representations, ICLR, 2025, pp. 2967–3006.'
short: M. Emrullah Ildiz, H.A. Gozeten, E.O. Taga, M. Mondelli, S. Oymak, in:, 13th
International Conference on Learning Representations, ICLR, 2025, pp. 2967–3006.
conference:
end_date: 2025-04-28
location: Singapore, Singapore
name: 'ICLR: International Conference on Learning Representations'
start_date: 2025-04-24
date_created: 2025-07-20T22:02:02Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-08-04T08:33:58Z
day: '01'
ddc:
- '000'
department:
- _id: MaMo
external_id:
arxiv:
- '2410.18837'
file:
- access_level: open_access
checksum: 5a38b093ebb4ee4eb662ea142621a5ca
content_type: application/pdf
creator: dernst
date_created: 2025-08-04T08:32:38Z
date_updated: 2025-08-04T08:32:38Z
file_id: '20112'
file_name: 2025_ICLR_Ildiz.pdf
file_size: 528171
relation: main_file
success: 1
file_date_updated: 2025-08-04T08:32:38Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 2967-3006
project:
- _id: 911e6d1f-16d5-11f0-9cad-c5c68c6a1cdf
grant_number: '101161364'
name: 'Inference in High Dimensions: Light-speed Algorithms and Information Limits'
publication: 13th International Conference on Learning Representations
publication_identifier:
isbn:
- '9798331320850'
publication_status: published
publisher: ICLR
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'High-dimensional analysis of knowledge distillation: Weak-to-Strong generalization
and scaling laws'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...