---
_id: '14378'
abstract:
- lang: eng
  text: 'Branching morphogenesis is a ubiquitous process that gives rise to high exchange
    surfaces in the vasculature and epithelial organs. Lymphatic capillaries form
    branched networks, which play a key role in the circulation of tissue fluid and
    immune cells. Although mouse models and correlative patient data indicate that
    the lymphatic capillary density directly correlates with functional output, i.e.,
    tissue fluid drainage and trafficking efficiency of dendritic cells, the mechanisms
    ensuring efficient tissue coverage remain poorly understood. Here, we use the
    mouse ear pinna lymphatic vessel network as a model system and combine lineage-tracing,
    genetic perturbations, whole-organ reconstructions and theoretical modeling to
    show that the dermal lymphatic capillaries tile space in an optimal, space-filling
    manner. This coverage is achieved by two complementary mechanisms: initial tissue
    invasion provides a non-optimal global scaffold via self-organized branching morphogenesis,
    while VEGF-C dependent side-branching from existing capillaries rapidly optimizes
    local coverage by directionally targeting low-density regions. With these two
    ingredients, we show that a minimal biophysical model can reproduce quantitatively
    whole-network reconstructions, across development and perturbations. Our results
    show that lymphatic capillary networks can exploit local self-organizing mechanisms
    to achieve tissue-scale optimization.'
acknowledgement: "We thank Dr. Kari Alitalo (University of Helsinki and Wihuri Research
  Institute) for critical reading of the manuscript, providing Vegfc+/− and Clp24ΔEC
  mouse strains and for hosting K.V.’s Academy of Finland postdoctoral researcher
  period (2015–2018). We thank Dr. Sara Wickström (University of Helsinki and Wihuri
  Research Institute) for providing Sox9:Egfp mouse\r\nstrain and the discussions.
  We thank Maija Atuegwu and Tapio Tainola for technical assistance. This work received
  funding from the Academy of Finland (K.V., 315710), Sigrid Juselius Foundation (K.V.),
  University of Helsinki (K.V.), Wihuri Research Institute (K.V.), the ERC under the
  European Union’s Horizon 2020 research and innovation program (grant agreement\r\nNo.
  851288 to E.H.) and under the Marie Skłodowska-Curie grant agreement No. 754411
  (to M.C.U.). Part of the work was carried out with the support of HiLIFE Laboratory
  Animal Centre Core Facility, University of Helsinki, Finland. Imaging was performed
  at the Biomedicum Imaging Unit, Helsinki University, Helsinki, Finland, with the
  support of Biocenter Finland. The AAVpreparations were produced at the Helsinki
  Virus (HelVi) Core."
article_number: '5878'
article_processing_charge: Yes
article_type: original
author:
- first_name: Mehmet C
  full_name: Ucar, Mehmet C
  id: 50B2A802-6007-11E9-A42B-EB23E6697425
  last_name: Ucar
  orcid: 0000-0003-0506-4217
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Emmi
  full_name: Tiilikainen, Emmi
  last_name: Tiilikainen
- first_name: Inam
  full_name: Liaqat, Inam
  last_name: Liaqat
- first_name: Emma
  full_name: Jakobsson, Emma
  last_name: Jakobsson
- first_name: Harri
  full_name: Nurmi, Harri
  last_name: Nurmi
- first_name: Kari
  full_name: Vaahtomeri, Kari
  id: 368EE576-F248-11E8-B48F-1D18A9856A87
  last_name: Vaahtomeri
  orcid: 0000-0001-7829-3518
citation:
  ama: Ucar MC, Hannezo EB, Tiilikainen E, et al. Self-organized and directed branching
    results in optimal coverage in developing dermal lymphatic networks. <i>Nature
    Communications</i>. 2023;14. doi:<a href="https://doi.org/10.1038/s41467-023-41456-7">10.1038/s41467-023-41456-7</a>
  apa: Ucar, M. C., Hannezo, E. B., Tiilikainen, E., Liaqat, I., Jakobsson, E., Nurmi,
    H., &#38; Vaahtomeri, K. (2023). Self-organized and directed branching results
    in optimal coverage in developing dermal lymphatic networks. <i>Nature Communications</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41467-023-41456-7">https://doi.org/10.1038/s41467-023-41456-7</a>
  chicago: Ucar, Mehmet C, Edouard B Hannezo, Emmi Tiilikainen, Inam Liaqat, Emma
    Jakobsson, Harri Nurmi, and Kari Vaahtomeri. “Self-Organized and Directed Branching
    Results in Optimal Coverage in Developing Dermal Lymphatic Networks.” <i>Nature
    Communications</i>. Springer Nature, 2023. <a href="https://doi.org/10.1038/s41467-023-41456-7">https://doi.org/10.1038/s41467-023-41456-7</a>.
  ieee: M. C. Ucar <i>et al.</i>, “Self-organized and directed branching results in
    optimal coverage in developing dermal lymphatic networks,” <i>Nature Communications</i>,
    vol. 14. Springer Nature, 2023.
  ista: Ucar MC, Hannezo EB, Tiilikainen E, Liaqat I, Jakobsson E, Nurmi H, Vaahtomeri
    K. 2023. Self-organized and directed branching results in optimal coverage in
    developing dermal lymphatic networks. Nature Communications. 14, 5878.
  mla: Ucar, Mehmet C., et al. “Self-Organized and Directed Branching Results in Optimal
    Coverage in Developing Dermal Lymphatic Networks.” <i>Nature Communications</i>,
    vol. 14, 5878, Springer Nature, 2023, doi:<a href="https://doi.org/10.1038/s41467-023-41456-7">10.1038/s41467-023-41456-7</a>.
  short: M.C. Ucar, E.B. Hannezo, E. Tiilikainen, I. Liaqat, E. Jakobsson, H. Nurmi,
    K. Vaahtomeri, Nature Communications 14 (2023).
corr_author: '1'
date_created: 2023-10-01T22:01:13Z
date_published: 2023-09-21T00:00:00Z
date_updated: 2025-04-14T07:43:56Z
day: '21'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1038/s41467-023-41456-7
ec_funded: 1
external_id:
  isi:
  - '001075884500007'
  pmid:
  - '37735168'
file:
- access_level: open_access
  checksum: 4fe5423403f2531753bcd9e0fea48e05
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-03T07:46:36Z
  date_updated: 2023-10-03T07:46:36Z
  file_id: '14384'
  file_name: 2023_NatureComm_Ucar.pdf
  file_size: 8143264
  relation: main_file
  success: 1
file_date_updated: 2023-10-03T07:46:36Z
fulldoi: https://doi.org/10.1038/s41467-023-41456-7
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 05943252-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '851288'
  name: Design Principles of Branching Morphogenesis
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-organized and directed branching results in optimal coverage in developing
  dermal lymphatic networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2023'
...
---
_id: '14379'
abstract:
- lang: eng
  text: We report on a simple surfactant/template free chemical route for the synthesis
    of semi-polycrystalline polyaniline-graphite (SPani-graphite) composite and its
    application as an electroactive material in electrochemical charge storage. The
    synthesized material exhibits well-defined poly-crystallographic lattices in high
    resolution transmission electron micrographs and sharp peaks in x-ray diffraction
    spectra suggesting crystalline nature of the material. The specific capacitance
    computed from the galvanostatic charge-discharge (GCD) data obtained from 3-electrode
    cell configuration using 1 M aq. Na2SO4 as an electrolyte was 111.4 F g−1 at a
    current density of 0.1 A g−1 which rises to 269 F g−1 at an elevated current density
    of 1.0 A g−1. A similar pattern of increase in the specific capacitance values
    with an increase in the current density was observed in the results obtained from
    2-electrode symmetric device configuration using polymer gel electrolyte (xanthan
    gum in 1 M aq. Na2SO4). The specific capacitance computed from the GCD data obtained
    from the device configuration was 20 F g−1 at the current density of 1.0 A g−1.
    The device delivers an energy density of 1.7 Wh kg−1 and a power density of 2.48
    kWh kg−1 at an applied current density of 0.5 A g−1 suggesting an excellent rate
    capability and power management. In addition, the device exhibits ⁓92 % specific
    capacitance retention up to 8000 continuous GCD cycles and ⁓80 % coulombic efficiency
    up to 10,000 continuous GCD cycles indicating excellent cycling stability. The
    unique feature of increasing specific capacitance with respect to applied current
    density is attributed to the presence of semi-polycrystalline phases in the SPani-graphite
    matrix. The material behaves as a surface redox supercapacitor and its unique
    mechanism of charge storage is discussed in detail in the article.
acknowledgement: This work was supported by 2023 Yeungnam University Research Grant.
article_number: '117463'
article_processing_charge: No
article_type: original
author:
- first_name: Neelima
  full_name: Mahato, Neelima
  last_name: Mahato
- first_name: Saurabh
  full_name: Singh, Saurabh
  id: 12d625da-9cb3-11ed-9667-af09d37d3f0a
  last_name: Singh
  orcid: 0000-0003-2209-5269
- first_name: Mohammad
  full_name: Faisal, Mohammad
  last_name: Faisal
- first_name: T. V.M.
  full_name: Sreekanth, T. V.M.
  last_name: Sreekanth
- first_name: Sutripto
  full_name: Majumder, Sutripto
  last_name: Majumder
- first_name: Kisoo
  full_name: Yoo, Kisoo
  last_name: Yoo
- first_name: Jonghoon
  full_name: Kim, Jonghoon
  last_name: Kim
citation:
  ama: Mahato N, Singh S, Faisal M, et al. Polycrystalline phases grown in-situ engendering
    unique mechanism of charge storage in polyaniline-graphite composite. <i>Synthetic
    Metals</i>. 2023;299. doi:<a href="https://doi.org/10.1016/j.synthmet.2023.117463">10.1016/j.synthmet.2023.117463</a>
  apa: Mahato, N., Singh, S., Faisal, M., Sreekanth, T. V. M., Majumder, S., Yoo,
    K., &#38; Kim, J. (2023). Polycrystalline phases grown in-situ engendering unique
    mechanism of charge storage in polyaniline-graphite composite. <i>Synthetic Metals</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.synthmet.2023.117463">https://doi.org/10.1016/j.synthmet.2023.117463</a>
  chicago: Mahato, Neelima, Saurabh Singh, Mohammad Faisal, T. V.M. Sreekanth, Sutripto
    Majumder, Kisoo Yoo, and Jonghoon Kim. “Polycrystalline Phases Grown In-Situ Engendering
    Unique Mechanism of Charge Storage in Polyaniline-Graphite Composite.” <i>Synthetic
    Metals</i>. Elsevier, 2023. <a href="https://doi.org/10.1016/j.synthmet.2023.117463">https://doi.org/10.1016/j.synthmet.2023.117463</a>.
  ieee: N. Mahato <i>et al.</i>, “Polycrystalline phases grown in-situ engendering
    unique mechanism of charge storage in polyaniline-graphite composite,” <i>Synthetic
    Metals</i>, vol. 299. Elsevier, 2023.
  ista: Mahato N, Singh S, Faisal M, Sreekanth TVM, Majumder S, Yoo K, Kim J. 2023.
    Polycrystalline phases grown in-situ engendering unique mechanism of charge storage
    in polyaniline-graphite composite. Synthetic Metals. 299, 117463.
  mla: Mahato, Neelima, et al. “Polycrystalline Phases Grown In-Situ Engendering Unique
    Mechanism of Charge Storage in Polyaniline-Graphite Composite.” <i>Synthetic Metals</i>,
    vol. 299, 117463, Elsevier, 2023, doi:<a href="https://doi.org/10.1016/j.synthmet.2023.117463">10.1016/j.synthmet.2023.117463</a>.
  short: N. Mahato, S. Singh, M. Faisal, T.V.M. Sreekanth, S. Majumder, K. Yoo, J.
    Kim, Synthetic Metals 299 (2023).
date_created: 2023-10-01T22:01:13Z
date_published: 2023-11-01T00:00:00Z
date_updated: 2024-01-30T13:55:50Z
day: '01'
department:
- _id: MaIb
doi: 10.1016/j.synthmet.2023.117463
external_id:
  isi:
  - '001083568900001'
fulldoi: https://doi.org/10.1016/j.synthmet.2023.117463
intvolume: '       299'
isi: 1
language:
- iso: eng
month: '11'
oa_version: None
publication: Synthetic Metals
publication_identifier:
  issn:
  - 0379-6779
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Polycrystalline phases grown in-situ engendering unique mechanism of charge
  storage in polyaniline-graphite composite
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 299
year: '2023'
...
---
_id: '14401'
abstract:
- lang: eng
  text: "Background: \r\nPro-apoptotic BAX is a central mediator of retinal ganglion
    cell (RGC) death after optic nerve damage. BAX activation occurs in two stages
    including translocation of latent BAX to the mitochondrial outer membrane (MOM)
    and then permeabilization of the MOM to facilitate the release of apoptotic signaling
    molecules. As a critical component of RGC death, BAX is an attractive target for
    neuroprotective therapies and an understanding of the kinetics of BAX activation
    and the mechanisms controlling the two stages of this process in RGCs is potentially
    valuable in informing the development of a neuroprotective strategy.\r\nMethods:\r\nThe
    kinetics of BAX translocation were assessed by both static and live-cell imaging
    of a GFP-BAX fusion protein introduced into RGCs using AAV2-mediated gene transfer
    in mice. Activation of BAX was achieved using an acute optic nerve crush (ONC)
    protocol. Live-cell imaging of GFP-BAX was achieved using explants of mouse retina
    harvested 7 days after ONC. Kinetics of translocation in RGCs were compared to
    GFP-BAX translocation in 661W tissue culture cells. Permeabilization of GFP-BAX
    was assessed by staining with the 6A7 monoclonal antibody, which recognizes a
    conformational change in this protein after MOM insertion. Assessment of individual
    kinases associated with both stages of activation was made using small molecule
    inhibitors injected into the vitreous either independently or in concert with
    ONC surgery. The contribution of the Dual Leucine Zipper-JUN-N-Terminal Kinase
    cascade was evaluated using mice with a double conditional knock-out of both Mkk4
    and Mkk7.\r\nResults:\r\nONC induces the translocation of GFP-BAX in RGCs at a
    slower rate and with less intracellular synchronicity than 661W cells, but exhibits
    less variability among mitochondrial foci within a single cell. GFP-BAX was also
    found to translocate in all compartments of an RGC including the dendritic arbor
    and axon. Approximately 6% of translocating RGCs exhibited retrotranslocation
    of BAX immediately following translocation. Unlike tissue culture cells, which
    exhibit simultaneous translocation and permeabilization, RGCs exhibited a significant
    delay between these two stages, similar to detached cells undergoing anoikis.
    Translocation, with minimal permeabilization could be induced in a subset of RGCs
    using an inhibitor of Focal Adhesion Kinase (PF573228). Permeabilization after
    ONC, in a majority of RGCs, could be inhibited with a broad spectrum kinase inhibitor
    (sunitinib) or a selective inhibitor for p38/MAPK14 (SB203580). Intervention of
    DLK-JNK axis signaling abrogated GFP-BAX translocation after ONC.\r\nConclusions:\r\nA
    comparison between BAX activation kinetics in tissue culture cells and in cells
    of a complex tissue environment shows distinct differences indicating that caution
    should be used when translating findings from one condition to the other. RGCs
    exhibit both a delay between translocation and permeabilization and the ability
    for translocated BAX to be retrotranslocated, suggesting several stages at which
    intervention of the activation process could be exploited in the design of a therapeutic
    strategy."
acknowledgement: "The authors would like to thank Mr. Joel Dietz for management of
  the mouse colony and helpful advice for conducting quantitative PCR studies and
  Mr. Santoshi Kinoshita at the Translational Research Initiative in Pathology laboratory
  at the University of Wisconsin-Madison for cutting sections analyzed in this study.\r\nThis
  work was supported by National Eye Institute grants R01 EY030123 (RWN), R01 EY018606
  (RTL), P30 EY016665 (Department of Ophthalmology and Visual Sciences, University
  of Wisconsin-Madison), T32 EY027721 (RJD) and F31 EY030739 (OJM). Additional funding
  was provided by the BrightFocus Foundation (RWN) and unrestricted grants from Research
  to Prevent Blindness, Inc to the Department of Ophthalmology and Visual Sciences
  (University of Wisconsin-Madison) and to the Department of Ophthalmology (University
  of Rochester)."
article_number: '67'
article_processing_charge: Yes
article_type: original
author:
- first_name: Margaret E
  full_name: Maes, Margaret E
  id: 3838F452-F248-11E8-B48F-1D18A9856A87
  last_name: Maes
  orcid: 0000-0001-9642-1085
- first_name: Ryan J.
  full_name: Donahue, Ryan J.
  last_name: Donahue
- first_name: Cassandra L.
  full_name: Schlamp, Cassandra L.
  last_name: Schlamp
- first_name: Olivia J.
  full_name: Marola, Olivia J.
  last_name: Marola
- first_name: Richard T.
  full_name: Libby, Richard T.
  last_name: Libby
- first_name: Robert W.
  full_name: Nickells, Robert W.
  last_name: Nickells
citation:
  ama: Maes ME, Donahue RJ, Schlamp CL, Marola OJ, Libby RT, Nickells RW. BAX activation
    in mouse retinal ganglion cells occurs in two temporally and mechanistically distinct
    steps. <i>Molecular Neurodegeneration</i>. 2023;18. doi:<a href="https://doi.org/10.1186/s13024-023-00659-8">10.1186/s13024-023-00659-8</a>
  apa: Maes, M. E., Donahue, R. J., Schlamp, C. L., Marola, O. J., Libby, R. T., &#38;
    Nickells, R. W. (2023). BAX activation in mouse retinal ganglion cells occurs
    in two temporally and mechanistically distinct steps. <i>Molecular Neurodegeneration</i>.
    Springer Nature. <a href="https://doi.org/10.1186/s13024-023-00659-8">https://doi.org/10.1186/s13024-023-00659-8</a>
  chicago: Maes, Margaret E, Ryan J. Donahue, Cassandra L. Schlamp, Olivia J. Marola,
    Richard T. Libby, and Robert W. Nickells. “BAX Activation in Mouse Retinal Ganglion
    Cells Occurs in Two Temporally and Mechanistically Distinct Steps.” <i>Molecular
    Neurodegeneration</i>. Springer Nature, 2023. <a href="https://doi.org/10.1186/s13024-023-00659-8">https://doi.org/10.1186/s13024-023-00659-8</a>.
  ieee: M. E. Maes, R. J. Donahue, C. L. Schlamp, O. J. Marola, R. T. Libby, and R.
    W. Nickells, “BAX activation in mouse retinal ganglion cells occurs in two temporally
    and mechanistically distinct steps,” <i>Molecular Neurodegeneration</i>, vol.
    18. Springer Nature, 2023.
  ista: Maes ME, Donahue RJ, Schlamp CL, Marola OJ, Libby RT, Nickells RW. 2023. BAX
    activation in mouse retinal ganglion cells occurs in two temporally and mechanistically
    distinct steps. Molecular Neurodegeneration. 18, 67.
  mla: Maes, Margaret E., et al. “BAX Activation in Mouse Retinal Ganglion Cells Occurs
    in Two Temporally and Mechanistically Distinct Steps.” <i>Molecular Neurodegeneration</i>,
    vol. 18, 67, Springer Nature, 2023, doi:<a href="https://doi.org/10.1186/s13024-023-00659-8">10.1186/s13024-023-00659-8</a>.
  short: M.E. Maes, R.J. Donahue, C.L. Schlamp, O.J. Marola, R.T. Libby, R.W. Nickells,
    Molecular Neurodegeneration 18 (2023).
date_created: 2023-10-08T22:01:15Z
date_published: 2023-09-26T00:00:00Z
date_updated: 2025-04-23T13:09:05Z
day: '26'
ddc:
- '570'
department:
- _id: SaSi
doi: 10.1186/s13024-023-00659-8
external_id:
  isi:
  - '001071403800001'
  pmid:
  - '37752598'
file:
- access_level: open_access
  checksum: 3aa218ddea4a082d8fd5e196ae55ca06
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-30T14:33:31Z
  date_updated: 2024-01-30T14:33:31Z
  file_id: '14917'
  file_name: 2023_MolecularNeurodegeneration_Maes.pdf
  file_size: 11568350
  relation: main_file
  success: 1
file_date_updated: 2024-01-30T14:33:31Z
fulldoi: https://doi.org/10.1186/s13024-023-00659-8
has_accepted_license: '1'
intvolume: '        18'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
publication: Molecular Neurodegeneration
publication_identifier:
  eissn:
  - 1750-1326
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: BAX activation in mouse retinal ganglion cells occurs in two temporally and
  mechanistically distinct steps
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2023'
...
---
_id: '14404'
abstract:
- lang: eng
  text: A light-triggered fabrication method extends the functionality of printable
    nanomaterials
acknowledgement: The authors thank the Werner-Siemens-Stiftung and the Institute of
  Science and Technology Austria for financial support.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Daniel
  full_name: Balazs, Daniel
  id: 302BADF6-85FC-11EA-9E3B-B9493DDC885E
  last_name: Balazs
  orcid: 0000-0001-7597-043X
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
citation:
  ama: Balazs D, Ibáñez M. Widening the use of 3D printing. <i>Science</i>. 2023;381(6665):1413-1414.
    doi:<a href="https://doi.org/10.1126/science.adk3070">10.1126/science.adk3070</a>
  apa: Balazs, D., &#38; Ibáñez, M. (2023). Widening the use of 3D printing. <i>Science</i>.
    AAAS. <a href="https://doi.org/10.1126/science.adk3070">https://doi.org/10.1126/science.adk3070</a>
  chicago: Balazs, Daniel, and Maria Ibáñez. “Widening the Use of 3D Printing.” <i>Science</i>.
    AAAS, 2023. <a href="https://doi.org/10.1126/science.adk3070">https://doi.org/10.1126/science.adk3070</a>.
  ieee: D. Balazs and M. Ibáñez, “Widening the use of 3D printing,” <i>Science</i>,
    vol. 381, no. 6665. AAAS, pp. 1413–1414, 2023.
  ista: Balazs D, Ibáñez M. 2023. Widening the use of 3D printing. Science. 381(6665),
    1413–1414.
  mla: Balazs, Daniel, and Maria Ibáñez. “Widening the Use of 3D Printing.” <i>Science</i>,
    vol. 381, no. 6665, AAAS, 2023, pp. 1413–14, doi:<a href="https://doi.org/10.1126/science.adk3070">10.1126/science.adk3070</a>.
  short: D. Balazs, M. Ibáñez, Science 381 (2023) 1413–1414.
corr_author: '1'
date_created: 2023-10-08T22:01:16Z
date_published: 2023-09-29T00:00:00Z
date_updated: 2025-09-09T13:04:47Z
day: '29'
department:
- _id: MaIb
- _id: LifeSc
doi: 10.1126/science.adk3070
external_id:
  isi:
  - '001100656800023'
  pmid:
  - '37769110'
fulldoi: https://doi.org/10.1126/science.adk3070
intvolume: '       381'
isi: 1
issue: '6665'
language:
- iso: eng
month: '09'
oa_version: None
page: 1413-1414
pmid: 1
project:
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
  name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
    Semiconductors for Waste Heat Recovery'
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
publication_status: published
publisher: AAAS
quality_controlled: '1'
scopus_import: '1'
status: public
title: Widening the use of 3D printing
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 381
year: '2023'
...
---
_id: '14405'
abstract:
- lang: eng
  text: We introduce hypernode automata as a new specification formalism for hyperproperties
    of concurrent systems. They are finite automata with nodes labeled with hypernode
    logic formulas and transitions labeled with actions. A hypernode logic formula
    specifies relations between sequences of variable values in different system executions.
    Unlike HyperLTL, hypernode logic takes an asynchronous view on execution traces
    by constraining the values and the order of value changes of each variable without
    correlating the timing of the changes. Different execution traces are synchronized
    solely through the transitions of hypernode automata. Hypernode automata naturally
    combine asynchronicity at the node level with synchronicity at the transition
    level. We show that the model-checking problem for hypernode automata is decidable
    over action-labeled Kripke structures, whose actions induce transitions of the
    specification automata. For this reason, hypernode automaton is a suitable formalism
    for specifying and verifying asynchronous hyperproperties, such as declassifying
    observational determinism in multi-threaded programs.
acknowledgement: "This work was supported in part by the Austrian Science Fund (FWF)
  SFB project\r\nSpyCoDe F8502, by the FWF projects ZK-35 and W1255-N23, and by the
  ERC Advanced Grant\r\nVAMOS 101020093."
alternative_title:
- LIPIcs
article_number: '21'
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Ezio
  full_name: Bartocci, Ezio
  last_name: Bartocci
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Dejan
  full_name: Nickovic, Dejan
  id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
  last_name: Nickovic
- first_name: Ana
  full_name: Oliveira da Costa, Ana
  id: f347ec37-6676-11ee-b395-a888cb7b4fb4
  last_name: Oliveira da Costa
  orcid: 0000-0002-8741-5799
citation:
  ama: 'Bartocci E, Henzinger TA, Nickovic D, Oliveira da Costa A. Hypernode automata.
    In: <i>34th International Conference on Concurrency Theory</i>. Vol 279. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2023.21">10.4230/LIPIcs.CONCUR.2023.21</a>'
  apa: 'Bartocci, E., Henzinger, T. A., Nickovic, D., &#38; Oliveira da Costa, A.
    (2023). Hypernode automata. In <i>34th International Conference on Concurrency
    Theory</i> (Vol. 279). Antwerp, Belgium: Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2023.21">https://doi.org/10.4230/LIPIcs.CONCUR.2023.21</a>'
  chicago: Bartocci, Ezio, Thomas A Henzinger, Dejan Nickovic, and Ana Oliveira da
    Costa. “Hypernode Automata.” In <i>34th International Conference on Concurrency
    Theory</i>, Vol. 279. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.
    <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2023.21">https://doi.org/10.4230/LIPIcs.CONCUR.2023.21</a>.
  ieee: E. Bartocci, T. A. Henzinger, D. Nickovic, and A. Oliveira da Costa, “Hypernode
    automata,” in <i>34th International Conference on Concurrency Theory</i>, Antwerp,
    Belgium, 2023, vol. 279.
  ista: 'Bartocci E, Henzinger TA, Nickovic D, Oliveira da Costa A. 2023. Hypernode
    automata. 34th International Conference on Concurrency Theory. CONCUR: Conference
    on Concurrency Theory, LIPIcs, vol. 279, 21.'
  mla: Bartocci, Ezio, et al. “Hypernode Automata.” <i>34th International Conference
    on Concurrency Theory</i>, vol. 279, 21, Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik, 2023, doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2023.21">10.4230/LIPIcs.CONCUR.2023.21</a>.
  short: E. Bartocci, T.A. Henzinger, D. Nickovic, A. Oliveira da Costa, in:, 34th
    International Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2023.
conference:
  end_date: 2023-09-22
  location: Antwerp, Belgium
  name: 'CONCUR: Conference on Concurrency Theory'
  start_date: 2023-09-19
corr_author: '1'
date_created: 2023-10-08T22:01:16Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2026-01-05T12:27:40Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.4230/LIPIcs.CONCUR.2023.21
ec_funded: 1
external_id:
  arxiv:
  - '2305.02836'
file:
- access_level: open_access
  checksum: 215765e40454d806174ac0a223e8d6fa
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-09T07:42:45Z
  date_updated: 2023-10-09T07:42:45Z
  file_id: '14413'
  file_name: 2023_LIPcs_Bartocci.pdf
  file_size: 795790
  relation: main_file
  success: 1
file_date_updated: 2023-10-09T07:42:45Z
fulldoi: https://doi.org/10.4230/LIPIcs.CONCUR.2023.21
has_accepted_license: '1'
intvolume: '       279'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 34th International Conference on Concurrency Theory
publication_identifier:
  isbn:
  - '9783959772990'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
  record:
  - id: '20866'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Hypernode automata
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 279
year: '2023'
...
---
_id: '14406'
abstract:
- lang: eng
  text: "Recently, a concept of generalized multifractality, which characterizes fluctuations
    and correlations of critical eigenstates, was introduced and explored for all
    10 symmetry classes of disordered systems. Here, by using the nonlinear sigma-model
    (\r\nNL\r\nσ\r\nM\r\n) field theory, we extend the theory of generalized multifractality
    to boundaries of systems at criticality. Our numerical simulations on two-dimensional
    systems of symmetry classes A, C, and AII fully confirm the analytical predictions
    of pure-scaling observables and Weyl symmetry relations between critical exponents
    of surface generalized multifractality. This demonstrates the validity of the
    \r\nNL\r\nσ\r\nM\r\n for the description of Anderson-localization critical phenomena,
    not only in the bulk but also on the boundary. The critical exponents strongly
    violate generalized parabolicity, in analogy with earlier results for the bulk,
    corroborating the conclusion that the considered Anderson-localization critical
    points are not described by conformal field theories. We further derive relations
    between generalized surface multifractal spectra and linear combinations of Lyapunov
    exponents of a strip in quasi-one-dimensional geometry, which hold under the assumption
    of invariance with respect to a logarithmic conformal map. Our numerics demonstrate
    that these relations hold with an excellent accuracy. Taken together, our results
    indicate an intriguing situation: the conformal invariance is broken but holds
    partially at critical points of Anderson localization."
acknowledgement: "We thank Ilya Gruzberg for many illuminating discussions. S.S.B.,
  J.F.K., and A.D.M. acknowledge support by the Deutsche Forschungsgemeinschaft (DFG)
  via the Grant\r\nNo. MI 658/14-1. I.S.B. acknowledges support from Russian Science
  Foundation (Grant No. 22-42-04416)."
article_number: '104205'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Serafim
  full_name: Babkin, Serafim
  id: 41e64307-6672-11ee-b9ad-cc7a0075a479
  last_name: Babkin
  orcid: 0009-0003-7382-8036
- first_name: Jonas F.
  full_name: Karcher, Jonas F.
  last_name: Karcher
- first_name: Igor S.
  full_name: Burmistrov, Igor S.
  last_name: Burmistrov
- first_name: Alexander D.
  full_name: Mirlin, Alexander D.
  last_name: Mirlin
citation:
  ama: Babkin S, Karcher JF, Burmistrov IS, Mirlin AD. Generalized surface multifractality
    in two-dimensional disordered systems. <i>Physical Review B</i>. 2023;108(10).
    doi:<a href="https://doi.org/10.1103/PhysRevB.108.104205">10.1103/PhysRevB.108.104205</a>
  apa: Babkin, S., Karcher, J. F., Burmistrov, I. S., &#38; Mirlin, A. D. (2023).
    Generalized surface multifractality in two-dimensional disordered systems. <i>Physical
    Review B</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.108.104205">https://doi.org/10.1103/PhysRevB.108.104205</a>
  chicago: Babkin, Serafim, Jonas F. Karcher, Igor S. Burmistrov, and Alexander D.
    Mirlin. “Generalized Surface Multifractality in Two-Dimensional Disordered Systems.”
    <i>Physical Review B</i>. American Physical Society, 2023. <a href="https://doi.org/10.1103/PhysRevB.108.104205">https://doi.org/10.1103/PhysRevB.108.104205</a>.
  ieee: S. Babkin, J. F. Karcher, I. S. Burmistrov, and A. D. Mirlin, “Generalized
    surface multifractality in two-dimensional disordered systems,” <i>Physical Review
    B</i>, vol. 108, no. 10. American Physical Society, 2023.
  ista: Babkin S, Karcher JF, Burmistrov IS, Mirlin AD. 2023. Generalized surface
    multifractality in two-dimensional disordered systems. Physical Review B. 108(10),
    104205.
  mla: Babkin, Serafim, et al. “Generalized Surface Multifractality in Two-Dimensional
    Disordered Systems.” <i>Physical Review B</i>, vol. 108, no. 10, 104205, American
    Physical Society, 2023, doi:<a href="https://doi.org/10.1103/PhysRevB.108.104205">10.1103/PhysRevB.108.104205</a>.
  short: S. Babkin, J.F. Karcher, I.S. Burmistrov, A.D. Mirlin, Physical Review B
    108 (2023).
date_created: 2023-10-08T22:01:17Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2025-09-09T13:03:44Z
day: '01'
department:
- _id: MaSe
doi: 10.1103/PhysRevB.108.104205
external_id:
  arxiv:
  - '2306.09455'
  isi:
  - '001186160100001'
fulldoi: https://doi.org/10.1103/PhysRevB.108.104205
intvolume: '       108'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2306.09455
month: '09'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Generalized surface multifractality in two-dimensional disordered systems
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 108
year: '2023'
...
---
_id: '14409'
abstract:
- lang: eng
  text: We present a photon- and metal-free approach for the radical fluorination
    of aliphatic oxalate-activated alcohols. The method relies on the spontaneous
    generation of the N-(chloromethyl)triethylenediamine radical dication, a potent
    single electron oxidant, from Selectfluor and 4-(dimethylamino)pyridine. The protocol
    is easily scalable and provides the desired fluorinated products within only a
    few minutes reaction time.
acknowledgement: We gratefully acknowledge the Max-Planck Society and the Institute
  of Science and Technology Austria (ISTA) for generous financial support. We also
  thank the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under
  Germany's Excellence Strategy – EXC 2008 – 390540038 – UniSysCat for funding. B.P.
  thanks the Boehringer Ingelheim Foundation for funding through the Plus 3 Perspectives
  Programme.
article_number: e202300769
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Haralds
  full_name: Baunis, Haralds
  id: 2eea55ec-e8ec-11ed-86cb-d9c76787acfe
  last_name: Baunis
- first_name: Bartholomäus
  full_name: Pieber, Bartholomäus
  id: 93e5e5b2-0da6-11ed-8a41-af589a024726
  last_name: Pieber
  orcid: 0000-0001-8689-388X
citation:
  ama: Baunis H, Pieber B. Formal radical deoxyfluorination of oxalate-activated alcohols
    triggered by the selectfluor-DMAP charge-transfer complex. <i>European Journal
    of Organic Chemistry</i>. 2023;26(42). doi:<a href="https://doi.org/10.1002/ejoc.202300769">10.1002/ejoc.202300769</a>
  apa: Baunis, H., &#38; Pieber, B. (2023). Formal radical deoxyfluorination of oxalate-activated
    alcohols triggered by the selectfluor-DMAP charge-transfer complex. <i>European
    Journal of Organic Chemistry</i>. Wiley. <a href="https://doi.org/10.1002/ejoc.202300769">https://doi.org/10.1002/ejoc.202300769</a>
  chicago: Baunis, Haralds, and Bartholomäus Pieber. “Formal Radical Deoxyfluorination
    of Oxalate-Activated Alcohols Triggered by the Selectfluor-DMAP Charge-Transfer
    Complex.” <i>European Journal of Organic Chemistry</i>. Wiley, 2023. <a href="https://doi.org/10.1002/ejoc.202300769">https://doi.org/10.1002/ejoc.202300769</a>.
  ieee: H. Baunis and B. Pieber, “Formal radical deoxyfluorination of oxalate-activated
    alcohols triggered by the selectfluor-DMAP charge-transfer complex,” <i>European
    Journal of Organic Chemistry</i>, vol. 26, no. 42. Wiley, 2023.
  ista: Baunis H, Pieber B. 2023. Formal radical deoxyfluorination of oxalate-activated
    alcohols triggered by the selectfluor-DMAP charge-transfer complex. European Journal
    of Organic Chemistry. 26(42), e202300769.
  mla: Baunis, Haralds, and Bartholomäus Pieber. “Formal Radical Deoxyfluorination
    of Oxalate-Activated Alcohols Triggered by the Selectfluor-DMAP Charge-Transfer
    Complex.” <i>European Journal of Organic Chemistry</i>, vol. 26, no. 42, e202300769,
    Wiley, 2023, doi:<a href="https://doi.org/10.1002/ejoc.202300769">10.1002/ejoc.202300769</a>.
  short: H. Baunis, B. Pieber, European Journal of Organic Chemistry 26 (2023).
corr_author: '1'
date_created: 2023-10-08T22:01:18Z
date_published: 2023-11-07T00:00:00Z
date_updated: 2024-10-09T21:07:03Z
day: '07'
ddc:
- '540'
department:
- _id: BaPi
doi: 10.1002/ejoc.202300769
external_id:
  isi:
  - '001072666500001'
file:
- access_level: open_access
  checksum: e8ad7865acd94672e476f273ccf3d542
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-30T14:04:44Z
  date_updated: 2024-01-30T14:04:44Z
  file_id: '14913'
  file_name: 2023_EurJOrgChem_Baunis.pdf
  file_size: 3277622
  relation: main_file
  success: 1
file_date_updated: 2024-01-30T14:04:44Z
fulldoi: https://doi.org/10.1002/ejoc.202300769
has_accepted_license: '1'
intvolume: '        26'
isi: 1
issue: '42'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication: European Journal of Organic Chemistry
publication_identifier:
  eissn:
  - 1099-0690
  issn:
  - 1434-193X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Formal radical deoxyfluorination of oxalate-activated alcohols triggered by
  the selectfluor-DMAP charge-transfer complex
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2023'
...
---
_id: '14410'
abstract:
- lang: eng
  text: This paper focuses on the implementation details of the baseline methods and
    a recent lightweight conditional model extrapolation algorithm LIMES [5] for streaming
    data under class-prior shift. LIMES achieves superior performance over the baseline
    methods, especially concerning the minimum-across-day accuracy, which is important
    for the users of the system. In this work, the key measures to facilitate reproducibility
    and enhance the credibility of the results are described.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Paulina
  full_name: Tomaszewska, Paulina
  last_name: Tomaszewska
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Tomaszewska P, Lampert C. On the implementation of baselines and lightweight
    conditional model extrapolation (LIMES) under class-prior shift. In: <i>International
    Workshop on Reproducible Research in Pattern Recognition</i>. Vol 14068. Springer
    Nature; 2023:67-73. doi:<a href="https://doi.org/10.1007/978-3-031-40773-4_6">10.1007/978-3-031-40773-4_6</a>'
  apa: 'Tomaszewska, P., &#38; Lampert, C. (2023). On the implementation of baselines
    and lightweight conditional model extrapolation (LIMES) under class-prior shift.
    In <i>International Workshop on Reproducible Research in Pattern Recognition</i>
    (Vol. 14068, pp. 67–73). Montreal, Canada: Springer Nature. <a href="https://doi.org/10.1007/978-3-031-40773-4_6">https://doi.org/10.1007/978-3-031-40773-4_6</a>'
  chicago: Tomaszewska, Paulina, and Christoph Lampert. “On the Implementation of Baselines
    and Lightweight Conditional Model Extrapolation (LIMES) under Class-Prior Shift.”
    In <i>International Workshop on Reproducible Research in Pattern Recognition</i>,
    14068:67–73. Springer Nature, 2023. <a href="https://doi.org/10.1007/978-3-031-40773-4_6">https://doi.org/10.1007/978-3-031-40773-4_6</a>.
  ieee: P. Tomaszewska and C. Lampert, “On the implementation of baselines and lightweight
    conditional model extrapolation (LIMES) under class-prior shift,” in <i>International
    Workshop on Reproducible Research in Pattern Recognition</i>, Montreal, Canada,
    2023, vol. 14068, pp. 67–73.
  ista: 'Tomaszewska P, Lampert C. 2023. On the implementation of baselines and lightweight
    conditional model extrapolation (LIMES) under class-prior shift. International
    Workshop on Reproducible Research in Pattern Recognition. RRPR: Reproducible Research
    in Pattern Recognition, LNCS, vol. 14068, 67–73.'
  mla: Tomaszewska, Paulina, and Christoph Lampert. “On the Implementation of Baselines
    and Lightweight Conditional Model Extrapolation (LIMES) under Class-Prior Shift.”
    <i>International Workshop on Reproducible Research in Pattern Recognition</i>,
    vol. 14068, Springer Nature, 2023, pp. 67–73, doi:<a href="https://doi.org/10.1007/978-3-031-40773-4_6">10.1007/978-3-031-40773-4_6</a>.
  short: P. Tomaszewska, C. Lampert, in:, International Workshop on Reproducible Research
    in Pattern Recognition, Springer Nature, 2023, pp. 67–73.
conference:
  end_date: 2022-08-21
  location: Montreal, Canada
  name: 'RRPR: Reproducible Research in Pattern Recognition'
  start_date: 2022-08-21
date_created: 2023-10-08T22:01:18Z
date_published: 2023-08-20T00:00:00Z
date_updated: 2023-10-09T06:48:02Z
day: '20'
department:
- _id: ChLa
doi: 10.1007/978-3-031-40773-4_6
fulldoi: https://doi.org/10.1007/978-3-031-40773-4_6
intvolume: '     14068'
language:
- iso: eng
month: '08'
oa_version: None
page: 67-73
publication: International Workshop on Reproducible Research in Pattern Recognition
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783031407727'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the implementation of baselines and lightweight conditional model extrapolation
  (LIMES) under class-prior shift
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14068
year: '2023'
...
---
_id: '14411'
abstract:
- lang: eng
  text: "Partially specified Boolean networks (PSBNs) represent a promising framework
    for the qualitative modelling of biological systems in which the logic of interactions
    is not completely known. Phenotype control aims to stabilise the network in states
    exhibiting specific traits.\r\nIn this paper, we define the phenotype control
    problem in the context of asynchronous PSBNs and propose a novel semi-symbolic
    algorithm for solving this problem with permanent variable perturbations."
acknowledgement: This work was supported by the Czech Foundation grant No. GA22-10845S,
  Grant Agency of Masaryk University grant No. MUNI/G/1771/2020, and the European
  Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
  Grant Agreement No. 101034413.
alternative_title:
- LNBI
article_processing_charge: No
author:
- first_name: Nikola
  full_name: Beneš, Nikola
  last_name: Beneš
- first_name: Luboš
  full_name: Brim, Luboš
  last_name: Brim
- first_name: Samuel
  full_name: Pastva, Samuel
  id: 07c5ea74-f61c-11ec-a664-aa7c5d957b2b
  last_name: Pastva
  orcid: 0000-0003-1993-0331
- first_name: David
  full_name: Šafránek, David
  last_name: Šafránek
- first_name: Eva
  full_name: Šmijáková, Eva
  last_name: Šmijáková
citation:
  ama: 'Beneš N, Brim L, Pastva S, Šafránek D, Šmijáková E. Phenotype control of partially
    specified boolean networks. In: <i>21st International Conference on Computational
    Methods in Systems Biology</i>. Vol 14137. Springer Nature; 2023:18-35. doi:<a
    href="https://doi.org/10.1007/978-3-031-42697-1_2">10.1007/978-3-031-42697-1_2</a>'
  apa: 'Beneš, N., Brim, L., Pastva, S., Šafránek, D., &#38; Šmijáková, E. (2023).
    Phenotype control of partially specified boolean networks. In <i>21st International
    Conference on Computational Methods in Systems Biology</i> (Vol. 14137, pp. 18–35).
    Luxembourg City, Luxembourg: Springer Nature. <a href="https://doi.org/10.1007/978-3-031-42697-1_2">https://doi.org/10.1007/978-3-031-42697-1_2</a>'
  chicago: Beneš, Nikola, Luboš Brim, Samuel Pastva, David Šafránek, and Eva Šmijáková.
    “Phenotype Control of Partially Specified Boolean Networks.” In <i>21st International
    Conference on Computational Methods in Systems Biology</i>, 14137:18–35. Springer
    Nature, 2023. <a href="https://doi.org/10.1007/978-3-031-42697-1_2">https://doi.org/10.1007/978-3-031-42697-1_2</a>.
  ieee: N. Beneš, L. Brim, S. Pastva, D. Šafránek, and E. Šmijáková, “Phenotype control
    of partially specified boolean networks,” in <i>21st International Conference
    on Computational Methods in Systems Biology</i>, Luxembourg City, Luxembourg,
    2023, vol. 14137, pp. 18–35.
  ista: 'Beneš N, Brim L, Pastva S, Šafránek D, Šmijáková E. 2023. Phenotype control
    of partially specified boolean networks. 21st International Conference on Computational
    Methods in Systems Biology. CMSB: Computational Methods in Systems Biology, LNBI,
    vol. 14137, 18–35.'
  mla: Beneš, Nikola, et al. “Phenotype Control of Partially Specified Boolean Networks.”
    <i>21st International Conference on Computational Methods in Systems Biology</i>,
    vol. 14137, Springer Nature, 2023, pp. 18–35, doi:<a href="https://doi.org/10.1007/978-3-031-42697-1_2">10.1007/978-3-031-42697-1_2</a>.
  short: N. Beneš, L. Brim, S. Pastva, D. Šafránek, E. Šmijáková, in:, 21st International
    Conference on Computational Methods in Systems Biology, Springer Nature, 2023,
    pp. 18–35.
conference:
  end_date: 2023-09-15
  location: Luxembourg City, Luxembourg
  name: 'CMSB: Computational Methods in Systems Biology'
  start_date: 2023-09-13
date_created: 2023-10-08T22:01:18Z
date_published: 2023-09-09T00:00:00Z
date_updated: 2025-09-09T14:25:46Z
day: '09'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-031-42697-1_2
ec_funded: 1
external_id:
  isi:
  - '001156280600002'
file:
- access_level: open_access
  checksum: 6f71bdaedb770b52380222fd9f4d7937
  content_type: application/pdf
  creator: spastva
  date_created: 2024-02-16T08:26:32Z
  date_updated: 2024-02-16T08:26:32Z
  file_id: '14997'
  file_name: cmsb2023.pdf
  file_size: 691582
  relation: main_file
  success: 1
file_date_updated: 2024-02-16T08:26:32Z
fulldoi: https://doi.org/10.1007/978-3-031-42697-1_2
has_accepted_license: '1'
intvolume: '     14137'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 18-35
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: 21st International Conference on Computational Methods in Systems Biology
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783031426964'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Phenotype control of partially specified boolean networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14137
year: '2023'
...
---
_id: '14417'
abstract:
- lang: eng
  text: Entropic risk (ERisk) is an established risk measure in finance, quantifying
    risk by an exponential re-weighting of rewards. We study ERisk for the first time
    in the context of turn-based stochastic games with the total reward objective.
    This gives rise to an objective function that demands the control of systems in
    a risk-averse manner. We show that the resulting games are determined and, in
    particular, admit optimal memoryless deterministic strategies. This contrasts
    risk measures that previously have been considered in the special case of Markov
    decision processes and that require randomization and/or memory. We provide several
    results on the decidability and the computational complexity of the threshold
    problem, i.e. whether the optimal value of ERisk exceeds a given threshold. In
    the most general case, the problem is decidable subject to Shanuel’s conjecture.
    If all inputs are rational, the resulting threshold problem can be solved using
    algebraic numbers, leading to decidability via a polynomial-time reduction to
    the existential theory of the reals. Further restrictions on the encoding of the
    input allow the solution of the threshold problem in NP∩coNP. Finally, an approximation
    algorithm for the optimal value of ERisk is provided.
acknowledgement: "This work was partly funded by the ERC CoG 863818 (ForM-SMArt),
  the DFG Grant\r\n389792660 as part of TRR 248 (Foundations of Perspicuous Software
  Systems), the Cluster of\r\nExcellence EXC 2050/1 (CeTI, project ID 390696704, as
  part of Germany’s Excellence Strategy), and the DFG projects BA-1679/11-1 and BA-1679/12-1."
alternative_title:
- LIPIcs
article_number: '15'
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Christel
  full_name: Baier, Christel
  last_name: Baier
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Tobias
  full_name: Meggendorfer, Tobias
  id: b21b0c15-30a2-11eb-80dc-f13ca25802e1
  last_name: Meggendorfer
  orcid: 0000-0002-1712-2165
- first_name: Jakob
  full_name: Piribauer, Jakob
  last_name: Piribauer
citation:
  ama: 'Baier C, Chatterjee K, Meggendorfer T, Piribauer J. Entropic risk for turn-based
    stochastic games. In: <i>48th International Symposium on Mathematical Foundations
    of Computer Science</i>. Vol 272. Schloss Dagstuhl - Leibniz-Zentrum für Informatik;
    2023. doi:<a href="https://doi.org/10.4230/LIPIcs.MFCS.2023.15">10.4230/LIPIcs.MFCS.2023.15</a>'
  apa: 'Baier, C., Chatterjee, K., Meggendorfer, T., &#38; Piribauer, J. (2023). Entropic
    risk for turn-based stochastic games. In <i>48th International Symposium on Mathematical
    Foundations of Computer Science</i> (Vol. 272). Bordeaux, France: Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.MFCS.2023.15">https://doi.org/10.4230/LIPIcs.MFCS.2023.15</a>'
  chicago: Baier, Christel, Krishnendu Chatterjee, Tobias Meggendorfer, and Jakob
    Piribauer. “Entropic Risk for Turn-Based Stochastic Games.” In <i>48th International
    Symposium on Mathematical Foundations of Computer Science</i>, Vol. 272. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2023. <a href="https://doi.org/10.4230/LIPIcs.MFCS.2023.15">https://doi.org/10.4230/LIPIcs.MFCS.2023.15</a>.
  ieee: C. Baier, K. Chatterjee, T. Meggendorfer, and J. Piribauer, “Entropic risk
    for turn-based stochastic games,” in <i>48th International Symposium on Mathematical
    Foundations of Computer Science</i>, Bordeaux, France, 2023, vol. 272.
  ista: 'Baier C, Chatterjee K, Meggendorfer T, Piribauer J. 2023. Entropic risk for
    turn-based stochastic games. 48th International Symposium on Mathematical Foundations
    of Computer Science. MFCS: Mathematical Foundations of Computer Science, LIPIcs,
    vol. 272, 15.'
  mla: Baier, Christel, et al. “Entropic Risk for Turn-Based Stochastic Games.” <i>48th
    International Symposium on Mathematical Foundations of Computer Science</i>, vol.
    272, 15, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:<a href="https://doi.org/10.4230/LIPIcs.MFCS.2023.15">10.4230/LIPIcs.MFCS.2023.15</a>.
  short: C. Baier, K. Chatterjee, T. Meggendorfer, J. Piribauer, in:, 48th International
    Symposium on Mathematical Foundations of Computer Science, Schloss Dagstuhl -
    Leibniz-Zentrum für Informatik, 2023.
conference:
  end_date: 2023-09-01
  location: Bordeaux, France
  name: 'MFCS: Mathematical Foundations of Computer Science'
  start_date: 2023-08-28
corr_author: '1'
date_created: 2023-10-09T09:21:05Z
date_published: 2023-08-21T00:00:00Z
date_updated: 2025-09-08T09:10:05Z
day: '21'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.MFCS.2023.15
ec_funded: 1
external_id:
  arxiv:
  - '2307.06611'
file:
- access_level: open_access
  checksum: 402281b17ed669bbf149d0fdf68ac201
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-09T09:19:11Z
  date_updated: 2023-10-09T09:19:11Z
  file_id: '14418'
  file_name: 2023_LIPIcsMFCS_Baier.pdf
  file_size: 826843
  relation: main_file
  success: 1
file_date_updated: 2023-10-09T09:19:11Z
fulldoi: https://doi.org/10.4230/LIPIcs.MFCS.2023.15
has_accepted_license: '1'
intvolume: '       272'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: 48th International Symposium on Mathematical Foundations of Computer
  Science
publication_identifier:
  eissn:
  - 1868-8969
  isbn:
  - '9783959772921'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
  record:
  - id: '17474'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Entropic risk for turn-based stochastic games
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 272
year: '2023'
...
---
_id: '14426'
abstract:
- lang: eng
  text: To meet the physiological demands of the body, organs need to establish a
    functional tissue architecture and adequate size as the embryo develops to adulthood.
    In the liver, uni- and bipotent progenitor differentiation into hepatocytes and
    biliary epithelial cells (BECs), and their relative proportions, comprise the
    functional architecture. Yet, the contribution of individual liver progenitors
    at the organ level to both fates, and their specific proportion, is unresolved.
    Combining mathematical modelling with organ-wide, multispectral FRaeppli-NLS lineage
    tracing in zebrafish, we demonstrate that a precise BEC-to-hepatocyte ratio is
    established (i) fast, (ii) solely by heterogeneous lineage decisions from uni-
    and bipotent progenitors, and (iii) independent of subsequent cell type–specific
    proliferation. Extending lineage tracing to adulthood determined that embryonic
    cells undergo spatially heterogeneous three-dimensional growth associated with
    distinct environments. Strikingly, giant clusters comprising almost half a ventral
    lobe suggest lobe-specific dominant-like growth behaviours. We show substantial
    hepatocyte polyploidy in juveniles representing another hallmark of postembryonic
    liver growth. Our findings uncover heterogeneous progenitor contributions to tissue
    architecture-defining cell type proportions and postembryonic organ growth as
    key mechanisms forming the adult liver.
acknowledgement: "We thank the Ober group for discussion and comments on the manuscript.
  We are grateful to\r\nDr. F. Lemaigre for feedback on the manuscript and Dr. T.
  Piotrowski for invaluable support.\r\nWe thank the department of experimental medicine
  (AEM) in Copenhagen for expert fish\r\ncare. We gratefully acknowledge the DanStem
  Imaging Platform (University of Copenhagen)\r\nfor support and assistance in this
  work.\r\nThis work is supported by Novo Nordisk Foundation grant NNF17CC0027852
  (EAO);\r\nNordisk Foundation grant NNF19OC0058327 (EAO); Novo Nordisk Foundation
  grant\r\nNNF17OC0031204 (PRL); https://novonordiskfonden.dk/en/; Danish National\r\nResearch
  Foundation grant DNRF116 (EAO and AT); https://dg.dk/en/; John and Birthe Meyer\r\nFoundation
  (PRL) and European Research Council (ERC) under the EU Horizon 2020 research and
  Innovation Programme Grant Agreement No. 851288 (EH)."
article_number: e3002315
article_processing_charge: No
article_type: original
author:
- first_name: Iris A.
  full_name: Unterweger, Iris A.
  last_name: Unterweger
- first_name: Julie
  full_name: Klepstad, Julie
  last_name: Klepstad
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Pia R.
  full_name: Lundegaard, Pia R.
  last_name: Lundegaard
- first_name: Ala
  full_name: Trusina, Ala
  last_name: Trusina
- first_name: Elke A.
  full_name: Ober, Elke A.
  last_name: Ober
citation:
  ama: Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA. Lineage
    tracing identifies heterogeneous hepatoblast contribution to cell lineages and
    postembryonic organ growth dynamics. <i>PLoS Biology</i>. 2023;21(10). doi:<a
    href="https://doi.org/10.1371/journal.pbio.3002315">10.1371/journal.pbio.3002315</a>
  apa: Unterweger, I. A., Klepstad, J., Hannezo, E. B., Lundegaard, P. R., Trusina,
    A., &#38; Ober, E. A. (2023). Lineage tracing identifies heterogeneous hepatoblast
    contribution to cell lineages and postembryonic organ growth dynamics. <i>PLoS
    Biology</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pbio.3002315">https://doi.org/10.1371/journal.pbio.3002315</a>
  chicago: Unterweger, Iris A., Julie Klepstad, Edouard B Hannezo, Pia R. Lundegaard,
    Ala Trusina, and Elke A. Ober. “Lineage Tracing Identifies Heterogeneous Hepatoblast
    Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” <i>PLoS
    Biology</i>. Public Library of Science, 2023. <a href="https://doi.org/10.1371/journal.pbio.3002315">https://doi.org/10.1371/journal.pbio.3002315</a>.
  ieee: I. A. Unterweger, J. Klepstad, E. B. Hannezo, P. R. Lundegaard, A. Trusina,
    and E. A. Ober, “Lineage tracing identifies heterogeneous hepatoblast contribution
    to cell lineages and postembryonic organ growth dynamics,” <i>PLoS Biology</i>,
    vol. 21, no. 10. Public Library of Science, 2023.
  ista: Unterweger IA, Klepstad J, Hannezo EB, Lundegaard PR, Trusina A, Ober EA.
    2023. Lineage tracing identifies heterogeneous hepatoblast contribution to cell
    lineages and postembryonic organ growth dynamics. PLoS Biology. 21(10), e3002315.
  mla: Unterweger, Iris A., et al. “Lineage Tracing Identifies Heterogeneous Hepatoblast
    Contribution to Cell Lineages and Postembryonic Organ Growth Dynamics.” <i>PLoS
    Biology</i>, vol. 21, no. 10, e3002315, Public Library of Science, 2023, doi:<a
    href="https://doi.org/10.1371/journal.pbio.3002315">10.1371/journal.pbio.3002315</a>.
  short: I.A. Unterweger, J. Klepstad, E.B. Hannezo, P.R. Lundegaard, A. Trusina,
    E.A. Ober, PLoS Biology 21 (2023).
date_created: 2023-10-15T22:01:10Z
date_published: 2023-10-04T00:00:00Z
date_updated: 2025-04-14T07:52:27Z
day: '04'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1371/journal.pbio.3002315
ec_funded: 1
file:
- access_level: open_access
  checksum: 40a2b11b41d70a0e5939f8a52b66e389
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-16T07:20:49Z
  date_updated: 2023-10-16T07:20:49Z
  file_id: '14431'
  file_name: 2023_PloSBiology_Unterweger.pdf
  file_size: 6193110
  relation: main_file
  success: 1
file_date_updated: 2023-10-16T07:20:49Z
fulldoi: https://doi.org/10.1371/journal.pbio.3002315
has_accepted_license: '1'
intvolume: '        21'
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 05943252-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '851288'
  name: Design Principles of Branching Morphogenesis
publication: PLoS Biology
publication_identifier:
  eissn:
  - 1545-7885
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/JulieKlepstad/LiverDevelopment
scopus_import: '1'
status: public
title: Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages
  and postembryonic organ growth dynamics
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2023'
...
---
_id: '14427'
abstract:
- lang: eng
  text: In the paper, we establish Squash Rigidity Theorem—the dynamical spectral
    rigidity for piecewise analytic Bunimovich squash-type stadia whose convex arcs
    are homothetic. We also establish Stadium Rigidity Theorem—the dynamical spectral
    rigidity for piecewise analytic Bunimovich stadia whose flat boundaries are a
    priori fixed. In addition, for smooth Bunimovich squash-type stadia we compute
    the Lyapunov exponents along the maximal period two orbit, as well as the value
    of the Peierls’ Barrier function from the maximal marked length spectrum associated
    to the rotation number 2n/4n+1.
acknowledgement: 'VK acknowledges a partial support by the NSF grant DMS-1402164 and
  ERC Grant #885707. Discussions with Martin Leguil and Jacopo De Simoi were very
  useful. JC visited the University of Maryland and thanks for the hospitality. Also,
  JC was partially supported by the National Key Research and Development Program
  of China (No.2022YFA1005802), the NSFC Grant 12001392 and NSF of Jiangsu BK20200850.
  H.-K. Zhang is partially supported by the National Science Foundation (DMS-2220211),
  as well as Simons Foundation Collaboration Grants for Mathematicians (706383).'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jianyu
  full_name: Chen, Jianyu
  last_name: Chen
- first_name: Vadim
  full_name: Kaloshin, Vadim
  id: FE553552-CDE8-11E9-B324-C0EBE5697425
  last_name: Kaloshin
  orcid: 0000-0002-6051-2628
- first_name: Hong Kun
  full_name: Zhang, Hong Kun
  last_name: Zhang
citation:
  ama: Chen J, Kaloshin V, Zhang HK. Length spectrum rigidity for piecewise analytic
    Bunimovich billiards. <i>Communications in Mathematical Physics</i>. 2023;404:1-50.
    doi:<a href="https://doi.org/10.1007/s00220-023-04837-z">10.1007/s00220-023-04837-z</a>
  apa: Chen, J., Kaloshin, V., &#38; Zhang, H. K. (2023). Length spectrum rigidity
    for piecewise analytic Bunimovich billiards. <i>Communications in Mathematical
    Physics</i>. Springer Nature. <a href="https://doi.org/10.1007/s00220-023-04837-z">https://doi.org/10.1007/s00220-023-04837-z</a>
  chicago: Chen, Jianyu, Vadim Kaloshin, and Hong Kun Zhang. “Length Spectrum Rigidity
    for Piecewise Analytic Bunimovich Billiards.” <i>Communications in Mathematical
    Physics</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00220-023-04837-z">https://doi.org/10.1007/s00220-023-04837-z</a>.
  ieee: J. Chen, V. Kaloshin, and H. K. Zhang, “Length spectrum rigidity for piecewise
    analytic Bunimovich billiards,” <i>Communications in Mathematical Physics</i>,
    vol. 404. Springer Nature, pp. 1–50, 2023.
  ista: Chen J, Kaloshin V, Zhang HK. 2023. Length spectrum rigidity for piecewise
    analytic Bunimovich billiards. Communications in Mathematical Physics. 404, 1–50.
  mla: Chen, Jianyu, et al. “Length Spectrum Rigidity for Piecewise Analytic Bunimovich
    Billiards.” <i>Communications in Mathematical Physics</i>, vol. 404, Springer
    Nature, 2023, pp. 1–50, doi:<a href="https://doi.org/10.1007/s00220-023-04837-z">10.1007/s00220-023-04837-z</a>.
  short: J. Chen, V. Kaloshin, H.K. Zhang, Communications in Mathematical Physics
    404 (2023) 1–50.
corr_author: '1'
date_created: 2023-10-15T22:01:11Z
date_published: 2023-11-01T00:00:00Z
date_updated: 2025-04-14T07:53:45Z
day: '01'
department:
- _id: VaKa
doi: 10.1007/s00220-023-04837-z
ec_funded: 1
external_id:
  arxiv:
  - '1902.07330'
  isi:
  - '001073177200001'
fulldoi: https://doi.org/10.1007/s00220-023-04837-z
intvolume: '       404'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1902.07330
month: '11'
oa: 1
oa_version: Preprint
page: 1-50
project:
- _id: 9B8B92DE-BA93-11EA-9121-9846C619BF3A
  call_identifier: H2020
  grant_number: '885707'
  name: Spectral rigidity and integrability for billiards and geodesic flows
publication: Communications in Mathematical Physics
publication_identifier:
  eissn:
  - 1432-0916
  issn:
  - 0010-3616
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Length spectrum rigidity for piecewise analytic Bunimovich billiards
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 404
year: '2023'
...
---
_id: '14428'
abstract:
- lang: eng
  text: "Suppose we have two hash functions h1 and h2, but we trust the security of
    only one of them. To mitigate this worry, we wish to build a hash combiner Ch1,h2
    which is secure so long as one of the underlying hash functions is. This question
    has been well-studied in the regime of collision resistance. In this case, concatenating
    the two hash function outputs clearly works. Unfortunately, a long series of works
    (Boneh and Boyen, CRYPTO’06; Pietrzak, Eurocrypt’07; Pietrzak, CRYPTO’08) showed
    no (noticeably) shorter combiner for collision resistance is possible.\r\nIn this
    work, we revisit this pessimistic state of affairs, motivated by the observation
    that collision-resistance is insufficient for many interesting applications of
    cryptographic hash functions anyway. We argue the right formulation of the “hash
    combiner” is to build what we call random oracle (RO) combiners, utilizing stronger
    assumptions for stronger constructions.\r\nIndeed, we circumvent the previous
    lower bounds for collision resistance by constructing a simple length-preserving
    RO combiner C˜h1,h2Z1,Z2(M)=h1(M,Z1)⊕h2(M,Z2),where Z1,Z2\r\n are random salts
    of appropriate length. We show that this extra randomness is necessary for RO
    combiners, and indeed our construction is somewhat tight with this lower bound.\r\nOn
    the negative side, we show that one cannot generically apply the composition theorem
    to further replace “monolithic” hash functions h1 and h2 by some simpler indifferentiable
    construction (such as the Merkle-Damgård transformation) from smaller components,
    such as fixed-length compression functions. Finally, despite this issue, we directly
    prove collision resistance of the Merkle-Damgård variant of our combiner, where
    h1 and h2 are replaced by iterative Merkle-Damgård hashes applied to a fixed-length
    compression function. Thus, we can still subvert the concatenation barrier for
    collision-resistance combiners while utilizing practically small fixed-length
    components underneath."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Yevgeniy
  full_name: Dodis, Yevgeniy
  last_name: Dodis
- first_name: Niels
  full_name: Ferguson, Niels
  last_name: Ferguson
- first_name: Eli
  full_name: Goldin, Eli
  last_name: Goldin
- first_name: Peter
  full_name: Hall, Peter
  last_name: Hall
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
citation:
  ama: 'Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. Random oracle combiners:
    Breaking the concatenation barrier for collision-resistance. In: <i>43rd Annual
    International Cryptology Conference</i>. Vol 14082. Springer Nature; 2023:514-546.
    doi:<a href="https://doi.org/10.1007/978-3-031-38545-2_17">10.1007/978-3-031-38545-2_17</a>'
  apa: 'Dodis, Y., Ferguson, N., Goldin, E., Hall, P., &#38; Pietrzak, K. Z. (2023).
    Random oracle combiners: Breaking the concatenation barrier for collision-resistance.
    In <i>43rd Annual International Cryptology Conference</i> (Vol. 14082, pp. 514–546).
    Santa Barbara, CA, United States: Springer Nature. <a href="https://doi.org/10.1007/978-3-031-38545-2_17">https://doi.org/10.1007/978-3-031-38545-2_17</a>'
  chicago: 'Dodis, Yevgeniy, Niels Ferguson, Eli Goldin, Peter Hall, and Krzysztof
    Z Pietrzak. “Random Oracle Combiners: Breaking the Concatenation Barrier for Collision-Resistance.”
    In <i>43rd Annual International Cryptology Conference</i>, 14082:514–46. Springer
    Nature, 2023. <a href="https://doi.org/10.1007/978-3-031-38545-2_17">https://doi.org/10.1007/978-3-031-38545-2_17</a>.'
  ieee: 'Y. Dodis, N. Ferguson, E. Goldin, P. Hall, and K. Z. Pietrzak, “Random oracle
    combiners: Breaking the concatenation barrier for collision-resistance,” in <i>43rd
    Annual International Cryptology Conference</i>, Santa Barbara, CA, United States,
    2023, vol. 14082, pp. 514–546.'
  ista: 'Dodis Y, Ferguson N, Goldin E, Hall P, Pietrzak KZ. 2023. Random oracle combiners:
    Breaking the concatenation barrier for collision-resistance. 43rd Annual International
    Cryptology Conference. CRYPTO: Advances in Cryptology, LNCS, vol. 14082, 514–546.'
  mla: 'Dodis, Yevgeniy, et al. “Random Oracle Combiners: Breaking the Concatenation
    Barrier for Collision-Resistance.” <i>43rd Annual International Cryptology Conference</i>,
    vol. 14082, Springer Nature, 2023, pp. 514–46, doi:<a href="https://doi.org/10.1007/978-3-031-38545-2_17">10.1007/978-3-031-38545-2_17</a>.'
  short: Y. Dodis, N. Ferguson, E. Goldin, P. Hall, K.Z. Pietrzak, in:, 43rd Annual
    International Cryptology Conference, Springer Nature, 2023, pp. 514–546.
conference:
  end_date: 2023-08-24
  location: Santa Barbara, CA, United States
  name: 'CRYPTO: Advances in Cryptology'
  start_date: 2023-08-20
corr_author: '1'
date_created: 2023-10-15T22:01:11Z
date_published: 2023-08-09T00:00:00Z
date_updated: 2025-09-09T13:06:18Z
day: '09'
department:
- _id: KrPi
doi: 10.1007/978-3-031-38545-2_17
external_id:
  isi:
  - '001314616100017'
fulldoi: https://doi.org/10.1007/978-3-031-38545-2_17
intvolume: '     14082'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2023/1041
month: '08'
oa: 1
oa_version: Preprint
page: 514-546
publication: 43rd Annual International Cryptology Conference
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783031385445'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Random oracle combiners: Breaking the concatenation barrier for collision-resistance'
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14082
year: '2023'
...
---
_id: '14434'
abstract:
- lang: eng
  text: High entropy alloys (HEAs) are highly suitable candidate catalysts for oxygen
    evolution and reduction reactions (OER/ORR) as they offer numerous parameters
    for optimizing the electronic structure and catalytic sites. Herein, FeCoNiMoW
    HEA nanoparticles are synthesized using a solution‐based low‐temperature approach.
    Such FeCoNiMoW nanoparticles show high entropy properties, subtle lattice distortions,
    and modulated electronic structure, leading to superior OER performance with an
    overpotential of 233 mV at 10 mA cm<jats:sup>−2</jats:sup> and 276 mV at 100 mA cm<jats:sup>−2</jats:sup>.
    Density functional theory calculations reveal the electronic structures of the
    FeCoNiMoW active sites with an optimized d‐band center position that enables suitable
    adsorption of OOH* intermediates and reduces the Gibbs free energy barrier in
    the OER process. Aqueous zinc–air batteries (ZABs) based on this HEA demonstrate
    a high open circuit potential of 1.59 V, a peak power density of 116.9 mW cm<jats:sup>−2</jats:sup>,
    a specific capacity of 857 mAh g<jats:sub>Zn</jats:sub><jats:sup>−1</jats:sup><jats:sub>,</jats:sub>
    and excellent stability for over 660 h of continuous charge–discharge cycles.
    Flexible and solid ZABs are also assembled and tested, displaying excellent charge–discharge
    performance at different bending angles. This work shows the significance of 4d/5d
    metal‐modulated electronic structure and optimized adsorption ability to improve
    the performance of OER/ORR, ZABs, and beyond.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: The authors acknowledge funding from Generalitat de Catalunya 2021
  SGR 01581; the project COMBENERGY, PID2019-105490RB-C32, from the Spanish Ministerio
  de Ciencia e Innovación; the National Natural Science Foundation of China (22102002);
  the Anhui Provincial Natural Science Foundation (2108085QE192); Zhejiang Province
  key research and development project (2023C01191); the Foundation of State Key Laboratory
  of High-efficiency Utilization of Coal and Green Chemical Engineering (GrantNo.2022-K31);
  and The Key Research and Development Program of Hebei Province (20314305D). IREC
  is funded by the CERCA Programme from the Generalitat de Catalunya. L.L.Y. thanks
  the China Scholarship Council (CSC) for the scholarship support (202008130132).
  This research was supported by the Scientific Service Units (SSU) of ISTA (Institute
  of Science and Technology Austria) through resources provided by the Electron Microscopy
  Facility (EMF). S.L., S.H., and M.I. acknowledge funding by ISTA and the Werner
  Siemens.
article_number: '2303719'
article_processing_charge: No
article_type: original
author:
- first_name: Ren
  full_name: He, Ren
  last_name: He
- first_name: Linlin
  full_name: Yang, Linlin
  last_name: Yang
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Daochuan
  full_name: Jiang, Daochuan
  last_name: Jiang
- first_name: Seungho
  full_name: Lee, Seungho
  id: BB243B88-D767-11E9-B658-BC13E6697425
  last_name: Lee
  orcid: 0000-0002-6962-8598
- first_name: Sharona
  full_name: Horta, Sharona
  id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc
  last_name: Horta
- first_name: Zhifu
  full_name: Liang, Zhifu
  last_name: Liang
- first_name: Xuan
  full_name: Lu, Xuan
  last_name: Lu
- first_name: Ahmad
  full_name: Ostovari Moghaddam, Ahmad
  last_name: Ostovari Moghaddam
- first_name: Junshan
  full_name: Li, Junshan
  last_name: Li
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Ying
  full_name: Xu, Ying
  last_name: Xu
- first_name: Yingtang
  full_name: Zhou, Yingtang
  last_name: Zhou
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: He R, Yang L, Zhang Y, et al. A 3d‐4d‐5d high entropy alloy as a bifunctional
    oxygen catalyst for robust aqueous zinc–air batteries. <i>Advanced Materials</i>.
    2023;35(46). doi:<a href="https://doi.org/10.1002/adma.202303719">10.1002/adma.202303719</a>
  apa: He, R., Yang, L., Zhang, Y., Jiang, D., Lee, S., Horta, S., … Cabot, A. (2023).
    A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust aqueous
    zinc–air batteries. <i>Advanced Materials</i>. Wiley. <a href="https://doi.org/10.1002/adma.202303719">https://doi.org/10.1002/adma.202303719</a>
  chicago: He, Ren, Linlin Yang, Yu Zhang, Daochuan Jiang, Seungho Lee, Sharona Horta,
    Zhifu Liang, et al. “A 3d‐4d‐5d High Entropy Alloy as a Bifunctional Oxygen Catalyst
    for Robust Aqueous Zinc–Air Batteries.” <i>Advanced Materials</i>. Wiley, 2023.
    <a href="https://doi.org/10.1002/adma.202303719">https://doi.org/10.1002/adma.202303719</a>.
  ieee: R. He <i>et al.</i>, “A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen
    catalyst for robust aqueous zinc–air batteries,” <i>Advanced Materials</i>, vol.
    35, no. 46. Wiley, 2023.
  ista: He R, Yang L, Zhang Y, Jiang D, Lee S, Horta S, Liang Z, Lu X, Ostovari Moghaddam
    A, Li J, Ibáñez M, Xu Y, Zhou Y, Cabot A. 2023. A 3d‐4d‐5d high entropy alloy
    as a bifunctional oxygen catalyst for robust aqueous zinc–air batteries. Advanced
    Materials. 35(46), 2303719.
  mla: He, Ren, et al. “A 3d‐4d‐5d High Entropy Alloy as a Bifunctional Oxygen Catalyst
    for Robust Aqueous Zinc–Air Batteries.” <i>Advanced Materials</i>, vol. 35, no.
    46, 2303719, Wiley, 2023, doi:<a href="https://doi.org/10.1002/adma.202303719">10.1002/adma.202303719</a>.
  short: R. He, L. Yang, Y. Zhang, D. Jiang, S. Lee, S. Horta, Z. Liang, X. Lu, A.
    Ostovari Moghaddam, J. Li, M. Ibáñez, Y. Xu, Y. Zhou, A. Cabot, Advanced Materials
    35 (2023).
date_created: 2023-10-17T10:52:23Z
date_published: 2023-11-16T00:00:00Z
date_updated: 2025-04-15T06:36:40Z
day: '16'
department:
- _id: MaIb
doi: 10.1002/adma.202303719
external_id:
  isi:
  - '001083876900001'
  pmid:
  - '37487245'
fulldoi: https://doi.org/10.1002/adma.202303719
intvolume: '        35'
isi: 1
issue: '46'
keyword:
- Mechanical Engineering
- Mechanics of Materials
- General Materials Science
language:
- iso: eng
month: '11'
oa_version: None
pmid: 1
project:
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
  name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
    Semiconductors for Waste Heat Recovery'
publication: Advanced Materials
publication_identifier:
  eissn:
  - 1521-4095
  issn:
  - 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: A 3d‐4d‐5d high entropy alloy as a bifunctional oxygen catalyst for robust
  aqueous zinc–air batteries
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2023'
...
---
_id: '14441'
abstract:
- lang: eng
  text: We study the Fröhlich polaron model in R3, and establish the subleading term
    in the strong coupling asymptotics of its ground state energy, corresponding to
    the quantum corrections to the classical energy determined by the Pekar approximation.
acknowledgement: Funding from the European Union’s Horizon 2020 research and innovation
  programme under the ERC grant agreement No 694227 is acknowledged. Open access funding
  provided by Institute of Science and Technology (IST Austria).
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Morris
  full_name: Brooks, Morris
  id: B7ECF9FC-AA38-11E9-AC9A-0930E6697425
  last_name: Brooks
  orcid: 0000-0002-6249-0928
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: 'Brooks M, Seiringer R. The Fröhlich Polaron at strong coupling: Part I - The
    quantum correction to the classical energy. <i>Communications in Mathematical
    Physics</i>. 2023;404:287-337. doi:<a href="https://doi.org/10.1007/s00220-023-04841-3">10.1007/s00220-023-04841-3</a>'
  apa: 'Brooks, M., &#38; Seiringer, R. (2023). The Fröhlich Polaron at strong coupling:
    Part I - The quantum correction to the classical energy. <i>Communications in
    Mathematical Physics</i>. Springer Nature. <a href="https://doi.org/10.1007/s00220-023-04841-3">https://doi.org/10.1007/s00220-023-04841-3</a>'
  chicago: 'Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong
    Coupling: Part I - The Quantum Correction to the Classical Energy.” <i>Communications
    in Mathematical Physics</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00220-023-04841-3">https://doi.org/10.1007/s00220-023-04841-3</a>.'
  ieee: 'M. Brooks and R. Seiringer, “The Fröhlich Polaron at strong coupling: Part
    I - The quantum correction to the classical energy,” <i>Communications in Mathematical
    Physics</i>, vol. 404. Springer Nature, pp. 287–337, 2023.'
  ista: 'Brooks M, Seiringer R. 2023. The Fröhlich Polaron at strong coupling: Part
    I - The quantum correction to the classical energy. Communications in Mathematical
    Physics. 404, 287–337.'
  mla: 'Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong Coupling:
    Part I - The Quantum Correction to the Classical Energy.” <i>Communications in
    Mathematical Physics</i>, vol. 404, Springer Nature, 2023, pp. 287–337, doi:<a
    href="https://doi.org/10.1007/s00220-023-04841-3">10.1007/s00220-023-04841-3</a>.'
  short: M. Brooks, R. Seiringer, Communications in Mathematical Physics 404 (2023)
    287–337.
corr_author: '1'
date_created: 2023-10-22T22:01:13Z
date_published: 2023-11-01T00:00:00Z
date_updated: 2025-09-09T13:12:02Z
day: '01'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00220-023-04841-3
ec_funded: 1
external_id:
  arxiv:
  - '2207.03156'
  isi:
  - '001096217400007'
file:
- access_level: open_access
  checksum: 1ae49b39247cb6b40ff75997381581b8
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-31T12:21:39Z
  date_updated: 2023-10-31T12:21:39Z
  file_id: '14477'
  file_name: 2023_CommMathPhysics_Brooks.pdf
  file_size: 832375
  relation: main_file
  success: 1
file_date_updated: 2023-10-31T12:21:39Z
fulldoi: https://doi.org/10.1007/s00220-023-04841-3
has_accepted_license: '1'
intvolume: '       404'
isi: 1
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 287-337
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
publication: Communications in Mathematical Physics
publication_identifier:
  eissn:
  - 1432-0916
  issn:
  - 0010-3616
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The Fröhlich Polaron at strong coupling: Part I - The quantum correction to
  the classical energy'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 404
year: '2023'
...
---
OA_place: repository
OA_type: green
_id: '14442'
abstract:
- lang: eng
  text: In the presence of an obstacle, active particles condensate into a surface
    “wetting” layer due to persistent motion. If the obstacle is asymmetric, a rectification
    current arises in addition to wetting. Asymmetric geometries are therefore commonly
    used to concentrate microorganisms like bacteria and sperms. However, most studies
    neglect the fact that biological active matter is diverse, composed of individuals
    with distinct self-propulsions. Using simulations, we study a mixture of “fast”
    and “slow” active Brownian disks in two dimensions interacting with large half-disk
    obstacles. With this prototypical obstacle geometry, we analyze how the stationary
    collective behavior depends on the degree of self-propulsion “diversity,” defined
    as proportional to the difference between the self-propulsion speeds, while keeping
    the average self-propulsion speed fixed. A wetting layer rich in fast particles
    arises. The rectification current is amplified by speed diversity due to a superlinear
    dependence of rectification on self-propulsion speed, which arises from cooperative
    effects. Thus, the total rectification current cannot be obtained from an effective
    one-component active fluid with the same average self-propulsion speed, highlighting
    the importance of considering diversity in active matter.
acknowledgement: MR-V and RS are supported by Fondecyt Grant No. 1220536 and Millennium
  Science Initiative Program NCN19_170D of ANID, Chile. P.d.C. was supported by Scholarships
  Nos. 2021/10139-2 and 2022/13872-5 and ICTP-SAIFR Grant No. 2021/14335-0, all granted
  by São Paulo Research Foundation (FAPESP), Brazil.
article_number: '95'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Mauricio Nicolas
  full_name: Rojas Vega, Mauricio Nicolas
  id: 441e7207-f91f-11ec-b67c-9e6fe3d8fd6d
  last_name: Rojas Vega
- first_name: Pablo
  full_name: De Castro, Pablo
  last_name: De Castro
- first_name: Rodrigo
  full_name: Soto, Rodrigo
  last_name: Soto
citation:
  ama: Rojas Vega MN, De Castro P, Soto R. Mixtures of self-propelled particles interacting
    with asymmetric obstacles. <i>The European Physical Journal E</i>. 2023;46(10).
    doi:<a href="https://doi.org/10.1140/epje/s10189-023-00354-y">10.1140/epje/s10189-023-00354-y</a>
  apa: Rojas Vega, M. N., De Castro, P., &#38; Soto, R. (2023). Mixtures of self-propelled
    particles interacting with asymmetric obstacles. <i>The European Physical Journal
    E</i>. Springer Nature. <a href="https://doi.org/10.1140/epje/s10189-023-00354-y">https://doi.org/10.1140/epje/s10189-023-00354-y</a>
  chicago: Rojas Vega, Mauricio Nicolas, Pablo De Castro, and Rodrigo Soto. “Mixtures
    of Self-Propelled Particles Interacting with Asymmetric Obstacles.” <i>The European
    Physical Journal E</i>. Springer Nature, 2023. <a href="https://doi.org/10.1140/epje/s10189-023-00354-y">https://doi.org/10.1140/epje/s10189-023-00354-y</a>.
  ieee: M. N. Rojas Vega, P. De Castro, and R. Soto, “Mixtures of self-propelled particles
    interacting with asymmetric obstacles,” <i>The European Physical Journal E</i>,
    vol. 46, no. 10. Springer Nature, 2023.
  ista: Rojas Vega MN, De Castro P, Soto R. 2023. Mixtures of self-propelled particles
    interacting with asymmetric obstacles. The European Physical Journal E. 46(10),
    95.
  mla: Rojas Vega, Mauricio Nicolas, et al. “Mixtures of Self-Propelled Particles
    Interacting with Asymmetric Obstacles.” <i>The European Physical Journal E</i>,
    vol. 46, no. 10, 95, Springer Nature, 2023, doi:<a href="https://doi.org/10.1140/epje/s10189-023-00354-y">10.1140/epje/s10189-023-00354-y</a>.
  short: M.N. Rojas Vega, P. De Castro, R. Soto, The European Physical Journal E 46
    (2023).
corr_author: '1'
date_created: 2023-10-22T22:01:13Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2025-09-09T13:08:14Z
day: '01'
department:
- _id: AnSa
doi: 10.1140/epje/s10189-023-00354-y
external_id:
  arxiv:
  - '2111.05952'
  isi:
  - '001187541900001'
  pmid:
  - '37819444'
fulldoi: https://doi.org/10.1140/epje/s10189-023-00354-y
intvolume: '        46'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2111.05952'
month: '10'
oa: 1
oa_version: Preprint
pmid: 1
publication: The European Physical Journal E
publication_identifier:
  eissn:
  - 1292-895X
  issn:
  - 1292-8941
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mixtures of self-propelled particles interacting with asymmetric obstacles
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 46
year: '2023'
...
---
_id: '14443'
abstract:
- lang: eng
  text: "Importance  Climate change, pollution, urbanization, socioeconomic inequality,
    and psychosocial effects of the COVID-19 pandemic have caused massive changes
    in environmental conditions that affect brain health during the life span, both
    on a population level as well as on the level of the individual. How these environmental
    factors influence the brain, behavior, and mental illness is not well known.\r\nObservations
    \ A research strategy enabling population neuroscience to contribute to identify
    brain mechanisms underlying environment-related mental illness by leveraging innovative
    enrichment tools for data federation, geospatial observation, climate and pollution
    measures, digital health, and novel data integration techniques is described.
    This strategy can inform innovative treatments that target causal cognitive and
    molecular mechanisms of mental illness related to the environment. An example
    is presented of the environMENTAL Project that is leveraging federated cohort
    data of over 1.5 million European citizens and patients enriched with deep phenotyping
    data from large-scale behavioral neuroimaging cohorts to identify brain mechanisms
    related to environmental adversity underlying symptoms of depression, anxiety,
    stress, and substance misuse.\r\nConclusions and Relevance  This research will
    lead to the development of objective biomarkers and evidence-based interventions
    that will significantly improve outcomes of environment-related mental illness."
article_processing_charge: No
article_type: review
author:
- first_name: Gunter
  full_name: Schumann, Gunter
  last_name: Schumann
- first_name: Ole A.
  full_name: Andreassen, Ole A.
  last_name: Andreassen
- first_name: Tobias
  full_name: Banaschewski, Tobias
  last_name: Banaschewski
- first_name: Vince D.
  full_name: Calhoun, Vince D.
  last_name: Calhoun
- first_name: Nicholas
  full_name: Clinton, Nicholas
  last_name: Clinton
- first_name: Sylvane
  full_name: Desrivieres, Sylvane
  last_name: Desrivieres
- first_name: Ragnhild Eek
  full_name: Brandlistuen, Ragnhild Eek
  last_name: Brandlistuen
- first_name: Jianfeng
  full_name: Feng, Jianfeng
  last_name: Feng
- first_name: Soeren
  full_name: Hese, Soeren
  last_name: Hese
- first_name: Esther
  full_name: Hitchen, Esther
  last_name: Hitchen
- first_name: Per
  full_name: Hoffmann, Per
  last_name: Hoffmann
- first_name: Tianye
  full_name: Jia, Tianye
  last_name: Jia
- first_name: Viktor
  full_name: Jirsa, Viktor
  last_name: Jirsa
- first_name: Andre F.
  full_name: Marquand, Andre F.
  last_name: Marquand
- first_name: Frauke
  full_name: Nees, Frauke
  last_name: Nees
- first_name: Markus M.
  full_name: Nöthen, Markus M.
  last_name: Nöthen
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Elli
  full_name: Polemiti, Elli
  last_name: Polemiti
- first_name: Markus
  full_name: Ralser, Markus
  last_name: Ralser
- first_name: Michael
  full_name: Rapp, Michael
  last_name: Rapp
- first_name: Kerstin
  full_name: Schepanski, Kerstin
  last_name: Schepanski
- first_name: Tamara
  full_name: Schikowski, Tamara
  last_name: Schikowski
- first_name: Mel
  full_name: Slater, Mel
  last_name: Slater
- first_name: Peter
  full_name: Sommer, Peter
  last_name: Sommer
- first_name: Bernd Carsten
  full_name: Stahl, Bernd Carsten
  last_name: Stahl
- first_name: Paul M.
  full_name: Thompson, Paul M.
  last_name: Thompson
- first_name: Sven
  full_name: Twardziok, Sven
  last_name: Twardziok
- first_name: Dennis
  full_name: Van Der Meer, Dennis
  last_name: Van Der Meer
- first_name: Henrik
  full_name: Walter, Henrik
  last_name: Walter
- first_name: Lars
  full_name: Westlye, Lars
  last_name: Westlye
citation:
  ama: 'Schumann G, Andreassen OA, Banaschewski T, et al. Addressing global environmental
    challenges to mental health using population neuroscience: A review. <i>JAMA Psychiatry</i>.
    2023;80(10):1066-1074. doi:<a href="https://doi.org/10.1001/jamapsychiatry.2023.2996">10.1001/jamapsychiatry.2023.2996</a>'
  apa: 'Schumann, G., Andreassen, O. A., Banaschewski, T., Calhoun, V. D., Clinton,
    N., Desrivieres, S., … Westlye, L. (2023). Addressing global environmental challenges
    to mental health using population neuroscience: A review. <i>JAMA Psychiatry</i>.
    American Medical Association. <a href="https://doi.org/10.1001/jamapsychiatry.2023.2996">https://doi.org/10.1001/jamapsychiatry.2023.2996</a>'
  chicago: 'Schumann, Gunter, Ole A. Andreassen, Tobias Banaschewski, Vince D. Calhoun,
    Nicholas Clinton, Sylvane Desrivieres, Ragnhild Eek Brandlistuen, et al. “Addressing
    Global Environmental Challenges to Mental Health Using Population Neuroscience:
    A Review.” <i>JAMA Psychiatry</i>. American Medical Association, 2023. <a href="https://doi.org/10.1001/jamapsychiatry.2023.2996">https://doi.org/10.1001/jamapsychiatry.2023.2996</a>.'
  ieee: 'G. Schumann <i>et al.</i>, “Addressing global environmental challenges to
    mental health using population neuroscience: A review,” <i>JAMA Psychiatry</i>,
    vol. 80, no. 10. American Medical Association, pp. 1066–1074, 2023.'
  ista: 'Schumann G, Andreassen OA, Banaschewski T, Calhoun VD, Clinton N, Desrivieres
    S, Brandlistuen RE, Feng J, Hese S, Hitchen E, Hoffmann P, Jia T, Jirsa V, Marquand
    AF, Nees F, Nöthen MM, Novarino G, Polemiti E, Ralser M, Rapp M, Schepanski K,
    Schikowski T, Slater M, Sommer P, Stahl BC, Thompson PM, Twardziok S, Van Der
    Meer D, Walter H, Westlye L. 2023. Addressing global environmental challenges
    to mental health using population neuroscience: A review. JAMA Psychiatry. 80(10),
    1066–1074.'
  mla: 'Schumann, Gunter, et al. “Addressing Global Environmental Challenges to Mental
    Health Using Population Neuroscience: A Review.” <i>JAMA Psychiatry</i>, vol.
    80, no. 10, American Medical Association, 2023, pp. 1066–74, doi:<a href="https://doi.org/10.1001/jamapsychiatry.2023.2996">10.1001/jamapsychiatry.2023.2996</a>.'
  short: G. Schumann, O.A. Andreassen, T. Banaschewski, V.D. Calhoun, N. Clinton,
    S. Desrivieres, R.E. Brandlistuen, J. Feng, S. Hese, E. Hitchen, P. Hoffmann,
    T. Jia, V. Jirsa, A.F. Marquand, F. Nees, M.M. Nöthen, G. Novarino, E. Polemiti,
    M. Ralser, M. Rapp, K. Schepanski, T. Schikowski, M. Slater, P. Sommer, B.C. Stahl,
    P.M. Thompson, S. Twardziok, D. Van Der Meer, H. Walter, L. Westlye, JAMA Psychiatry
    80 (2023) 1066–1074.
date_created: 2023-10-22T22:01:14Z
date_published: 2023-10-01T00:00:00Z
date_updated: 2025-09-09T13:11:20Z
day: '01'
department:
- _id: GaNo
doi: 10.1001/jamapsychiatry.2023.2996
external_id:
  isi:
  - '001093447000016'
  pmid:
  - '37610741'
fulldoi: https://doi.org/10.1001/jamapsychiatry.2023.2996
intvolume: '        80'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa_version: None
page: 1066-1074
pmid: 1
publication: JAMA Psychiatry
publication_identifier:
  eissn:
  - 2168-6238
publication_status: published
publisher: American Medical Association
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Addressing global environmental challenges to mental health using population
  neuroscience: A review'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 80
year: '2023'
...
---
_id: '14444'
abstract:
- lang: eng
  text: "We prove several results about substructures in Latin squares. First, we
    explain how to adapt our recent work on high-girth Steiner triple systems to the
    setting of Latin squares, resolving a conjecture of Linial that there exist Latin
    squares with arbitrarily high girth. As a consequence, we see that the number
    of order- n  Latin squares with no intercalate (i.e., no  2×2 Latin subsquare)
    is at least  (e−9/4n−o(n))n2. Equivalently,  P[N=0]≥e−n2/4−o(n2)=e−(1+o(1))EN\r\n
    , where  N is the number of intercalates in a uniformly random order- n Latin
    square. \r\nIn fact, extending recent work of Kwan, Sah, and Sawhney, we resolve
    the general large-deviation problem for intercalates in random Latin squares,
    up to constant factors in the exponent: for any constant  0<δ≤1 we have  P[N≤(1−δ)EN]=exp(−Θ(n2))
    and for any constant  δ>0 we have  P[N≥(1+δ)EN]=exp(−Θ(n4/3logn)). \r\nFinally,
    as an application of some new general tools for studying substructures in random
    Latin squares, we show that in almost all order- n Latin squares, the number of
    cuboctahedra (i.e., the number of pairs of possibly degenerate  2×2 submatrices
    with the same arrangement of symbols) is of order  n4, which is the minimum possible.
    As observed by Gowers and Long, this number can be interpreted as measuring ``how
    associative'' the quasigroup associated with the Latin square is."
acknowledgement: Sah and Sawhney were supported by NSF Graduate Research Fellowship
  Program DGE-1745302. Sah was supported by the PD Soros Fellowship. Simkin was supported
  by the Center of Mathematical Sciences and Applications at Harvard University.
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Matthew Alan
  full_name: Kwan, Matthew Alan
  id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
  last_name: Kwan
  orcid: 0000-0002-4003-7567
- first_name: Ashwin
  full_name: Sah, Ashwin
  last_name: Sah
- first_name: Mehtaab
  full_name: Sawhney, Mehtaab
  last_name: Sawhney
- first_name: Michael
  full_name: Simkin, Michael
  last_name: Simkin
citation:
  ama: Kwan MA, Sah A, Sawhney M, Simkin M. Substructures in Latin squares. <i>Israel
    Journal of Mathematics</i>. 2023;256(2):363-416. doi:<a href="https://doi.org/10.1007/s11856-023-2513-9">10.1007/s11856-023-2513-9</a>
  apa: Kwan, M. A., Sah, A., Sawhney, M., &#38; Simkin, M. (2023). Substructures in
    Latin squares. <i>Israel Journal of Mathematics</i>. Springer Nature. <a href="https://doi.org/10.1007/s11856-023-2513-9">https://doi.org/10.1007/s11856-023-2513-9</a>
  chicago: Kwan, Matthew Alan, Ashwin Sah, Mehtaab Sawhney, and Michael Simkin. “Substructures
    in Latin Squares.” <i>Israel Journal of Mathematics</i>. Springer Nature, 2023.
    <a href="https://doi.org/10.1007/s11856-023-2513-9">https://doi.org/10.1007/s11856-023-2513-9</a>.
  ieee: M. A. Kwan, A. Sah, M. Sawhney, and M. Simkin, “Substructures in Latin squares,”
    <i>Israel Journal of Mathematics</i>, vol. 256, no. 2. Springer Nature, pp. 363–416,
    2023.
  ista: Kwan MA, Sah A, Sawhney M, Simkin M. 2023. Substructures in Latin squares.
    Israel Journal of Mathematics. 256(2), 363–416.
  mla: Kwan, Matthew Alan, et al. “Substructures in Latin Squares.” <i>Israel Journal
    of Mathematics</i>, vol. 256, no. 2, Springer Nature, 2023, pp. 363–416, doi:<a
    href="https://doi.org/10.1007/s11856-023-2513-9">10.1007/s11856-023-2513-9</a>.
  short: M.A. Kwan, A. Sah, M. Sawhney, M. Simkin, Israel Journal of Mathematics 256
    (2023) 363–416.
date_created: 2023-10-22T22:01:14Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2025-09-09T13:08:47Z
day: '01'
department:
- _id: MaKw
doi: 10.1007/s11856-023-2513-9
external_id:
  arxiv:
  - '2202.05088'
  isi:
  - '001081646400001'
fulldoi: https://doi.org/10.1007/s11856-023-2513-9
intvolume: '       256'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2202.05088
month: '09'
oa: 1
oa_version: Preprint
page: 363-416
publication: Israel Journal of Mathematics
publication_identifier:
  eissn:
  - 1565-8511
  issn:
  - 0021-2172
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Substructures in Latin squares
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 256
year: '2023'
...
---
_id: '14445'
abstract:
- lang: eng
  text: "We prove the following quantitative Borsuk–Ulam-type result (an equivariant
    analogue of Gromov’s Topological Overlap Theorem): Let X be a free ℤ/2-complex
    of dimension d with coboundary expansion at least ηk in dimension 0 ≤ k < d. Then
    for every equivariant map F: X →ℤ/2 ℝd, the fraction of d-simplices σ of X with
    0 ∈ F (σ) is at least 2−d Π d−1k=0ηk.\r\n\r\nAs an application, we show that for
    every sufficiently thick d-dimensional spherical building Y and every map f: Y
    → ℝ2d, we have f(σ) ∩ f(τ) ≠ ∅ for a constant fraction μd > 0 of pairs {σ, τ}
    of d-simplices of Y. In particular, such complexes are non-embeddable into ℝ2d,
    which proves a conjecture of Tancer and Vorwerk for sufficiently thick spherical
    buildings.\r\n\r\nWe complement these results by upper bounds on the coboundary
    expansion of two families of simplicial complexes; this indicates some limitations
    to the bounds one can obtain by straighforward applications of the quantitative
    Borsuk–Ulam theorem. Specifically, we prove\r\n\r\n• an upper bound of (d + 1)/2d
    on the normalized (d − 1)-th coboundary expansion constant of complete (d + 1)-partite
    d-dimensional complexes (under a mild divisibility assumption on the sizes of
    the parts); and\r\n\r\n• an upper bound of (d + 1)/2d + ε on the normalized (d
    − 1)-th coboundary expansion of the d-dimensional spherical building associated
    with GLd+2(Fq) for any ε > 0 and sufficiently large q. This disproves, in a rather
    strong sense, a conjecture of Lubotzky, Meshulam and Mozes."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Uli
  full_name: Wagner, Uli
  id: 36690CA2-F248-11E8-B48F-1D18A9856A87
  last_name: Wagner
  orcid: 0000-0002-1494-0568
- first_name: Pascal
  full_name: Wild, Pascal
  id: 4C20D868-F248-11E8-B48F-1D18A9856A87
  last_name: Wild
citation:
  ama: Wagner U, Wild P. Coboundary expansion, equivariant overlap, and crossing numbers
    of simplicial complexes. <i>Israel Journal of Mathematics</i>. 2023;256(2):675-717.
    doi:<a href="https://doi.org/10.1007/s11856-023-2521-9">10.1007/s11856-023-2521-9</a>
  apa: Wagner, U., &#38; Wild, P. (2023). Coboundary expansion, equivariant overlap,
    and crossing numbers of simplicial complexes. <i>Israel Journal of Mathematics</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s11856-023-2521-9">https://doi.org/10.1007/s11856-023-2521-9</a>
  chicago: Wagner, Uli, and Pascal Wild. “Coboundary Expansion, Equivariant Overlap,
    and Crossing Numbers of Simplicial Complexes.” <i>Israel Journal of Mathematics</i>.
    Springer Nature, 2023. <a href="https://doi.org/10.1007/s11856-023-2521-9">https://doi.org/10.1007/s11856-023-2521-9</a>.
  ieee: U. Wagner and P. Wild, “Coboundary expansion, equivariant overlap, and crossing
    numbers of simplicial complexes,” <i>Israel Journal of Mathematics</i>, vol. 256,
    no. 2. Springer Nature, pp. 675–717, 2023.
  ista: Wagner U, Wild P. 2023. Coboundary expansion, equivariant overlap, and crossing
    numbers of simplicial complexes. Israel Journal of Mathematics. 256(2), 675–717.
  mla: Wagner, Uli, and Pascal Wild. “Coboundary Expansion, Equivariant Overlap, and
    Crossing Numbers of Simplicial Complexes.” <i>Israel Journal of Mathematics</i>,
    vol. 256, no. 2, Springer Nature, 2023, pp. 675–717, doi:<a href="https://doi.org/10.1007/s11856-023-2521-9">10.1007/s11856-023-2521-9</a>.
  short: U. Wagner, P. Wild, Israel Journal of Mathematics 256 (2023) 675–717.
corr_author: '1'
date_created: 2023-10-22T22:01:14Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2024-10-09T21:07:12Z
day: '01'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.1007/s11856-023-2521-9
external_id:
  isi:
  - '001081646400010'
file:
- access_level: open_access
  checksum: fbb05619fe4b650f341cc730425dd9c3
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-31T11:20:31Z
  date_updated: 2023-10-31T11:20:31Z
  file_id: '14475'
  file_name: 2023_IsraelJourMath_Wagner.pdf
  file_size: 623787
  relation: main_file
  success: 1
file_date_updated: 2023-10-31T11:20:31Z
fulldoi: https://doi.org/10.1007/s11856-023-2521-9
has_accepted_license: '1'
intvolume: '       256'
isi: 1
issue: '2'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 675-717
publication: Israel Journal of Mathematics
publication_identifier:
  eissn:
  - 1565-8511
  issn:
  - 0021-2172
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coboundary expansion, equivariant overlap, and crossing numbers of simplicial
  complexes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 256
year: '2023'
...
---
_id: '14446'
abstract:
- lang: eng
  text: Recent work has paid close attention to the first principle of Granger causality,
    according to which cause precedes effect. In this context, the question may arise
    whether the detected direction of causality also reverses after the time reversal
    of unidirectionally coupled data. Recently, it has been shown that for unidirectionally
    causally connected autoregressive (AR) processes X → Y, after time reversal of
    data, the opposite causal direction Y → X is indeed detected, although typically
    as part of the bidirectional X↔ Y link. As we argue here, the answer is different
    when the measured data are not from AR processes but from linked deterministic
    systems. When the goal is the usual forward data analysis, cross-mapping-like
    approaches correctly detect X → Y, while Granger causality-like approaches, which
    should not be used for deterministic time series, detect causal independence X
    → Y. The results of backward causal analysis depend on the predictability of the
    reversed data. Unlike AR processes, observables from deterministic dynamical systems,
    even complex nonlinear ones, can be predicted well forward, while backward predictions
    can be difficult (notably when the time reversal of a function leads to one-to-many
    relations). To address this problem, we propose an approach based on models that
    provide multiple candidate predictions for the target, combined with a loss function
    that consideres only the best candidate. The resulting good forward and backward
    predictability supports the view that unidirectionally causally linked deterministic
    dynamical systems X → Y can be expected to detect the same link both before and
    after time reversal.
acknowledgement: The work was supported by the Scientific Grant Agency of the Ministry
  of Education of the Slovak Republic and the Slovak Academy of Sciences, projects
  APVV-21-0216, VEGA2-0096-21 and VEGA 2-0023-22.
article_processing_charge: Yes
article_type: original
author:
- first_name: Jozef
  full_name: Jakubík, Jozef
  last_name: Jakubík
- first_name: Phuong
  full_name: Bui Thi Mai, Phuong
  id: 3EC6EE64-F248-11E8-B48F-1D18A9856A87
  last_name: Bui Thi Mai
- first_name: Martina
  full_name: Chvosteková, Martina
  last_name: Chvosteková
- first_name: Anna
  full_name: Krakovská, Anna
  last_name: Krakovská
citation:
  ama: Jakubík J, Phuong M, Chvosteková M, Krakovská A. Against the flow of time with
    multi-output models. <i>Measurement Science Review</i>. 2023;23(4):175-183. doi:<a
    href="https://doi.org/10.2478/msr-2023-0023">10.2478/msr-2023-0023</a>
  apa: Jakubík, J., Phuong, M., Chvosteková, M., &#38; Krakovská, A. (2023). Against
    the flow of time with multi-output models. <i>Measurement Science Review</i>.
    Sciendo. <a href="https://doi.org/10.2478/msr-2023-0023">https://doi.org/10.2478/msr-2023-0023</a>
  chicago: Jakubík, Jozef, Mary Phuong, Martina Chvosteková, and Anna Krakovská. “Against
    the Flow of Time with Multi-Output Models.” <i>Measurement Science Review</i>.
    Sciendo, 2023. <a href="https://doi.org/10.2478/msr-2023-0023">https://doi.org/10.2478/msr-2023-0023</a>.
  ieee: J. Jakubík, M. Phuong, M. Chvosteková, and A. Krakovská, “Against the flow
    of time with multi-output models,” <i>Measurement Science Review</i>, vol. 23,
    no. 4. Sciendo, pp. 175–183, 2023.
  ista: Jakubík J, Phuong M, Chvosteková M, Krakovská A. 2023. Against the flow of
    time with multi-output models. Measurement Science Review. 23(4), 175–183.
  mla: Jakubík, Jozef, et al. “Against the Flow of Time with Multi-Output Models.”
    <i>Measurement Science Review</i>, vol. 23, no. 4, Sciendo, 2023, pp. 175–83,
    doi:<a href="https://doi.org/10.2478/msr-2023-0023">10.2478/msr-2023-0023</a>.
  short: J. Jakubík, M. Phuong, M. Chvosteková, A. Krakovská, Measurement Science
    Review 23 (2023) 175–183.
date_created: 2023-10-22T22:01:15Z
date_published: 2023-08-01T00:00:00Z
date_updated: 2025-09-09T13:10:30Z
day: '01'
ddc:
- '510'
department:
- _id: ChLa
doi: 10.2478/msr-2023-0023
external_id:
  isi:
  - '001070829600005'
file:
- access_level: open_access
  checksum: b069cc10fa6a7c96b2bc9f728165f9e6
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-31T12:07:23Z
  date_updated: 2023-10-31T12:07:23Z
  file_id: '14476'
  file_name: 2023_MeasurementScienceRev_Jakubik.pdf
  file_size: 2639783
  relation: main_file
  success: 1
file_date_updated: 2023-10-31T12:07:23Z
fulldoi: https://doi.org/10.2478/msr-2023-0023
has_accepted_license: '1'
intvolume: '        23'
isi: 1
issue: '4'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 175-183
publication: Measurement Science Review
publication_identifier:
  eissn:
  - 1335-8871
publication_status: published
publisher: Sciendo
quality_controlled: '1'
scopus_import: '1'
status: public
title: Against the flow of time with multi-output models
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 23
year: '2023'
...
