---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21981'
abstract:
- lang: eng
text: For Hamiltonian actions of semidirect products G = FxH, we study 2-cocycles
arising from residual Hamiltonian actions of F on Hamiltonian reductions for H.
The motivation comes from the study of Teichmüller spaces for surfaces with boundary,
which carry Hamiltonian actions of the Virasoro algebra. In this paper, we give
a general setup for the problem, and we suggest an easier way to obtain the Gelfand-Fuchs
2-cocycles for Hamiltonian actions on Teichmüller spaces.
article_number: '105878'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Viacheslav
full_name: Goncharov, Viacheslav
id: 8a0e2993-7114-11f0-b60e-f50e633649d8
last_name: Goncharov
citation:
ama: Goncharov V. An easier way to compute 2-cocycles coming from a reduction for
semidirect products. Journal of Geometry and Physics. 2026;227. doi:10.1016/j.geomphys.2026.105878
apa: Goncharov, V. (2026). An easier way to compute 2-cocycles coming from a reduction
for semidirect products. Journal of Geometry and Physics. Elsevier. https://doi.org/10.1016/j.geomphys.2026.105878
chicago: Goncharov, Viacheslav. “An Easier Way to Compute 2-Cocycles Coming from
a Reduction for Semidirect Products.” Journal of Geometry and Physics.
Elsevier, 2026. https://doi.org/10.1016/j.geomphys.2026.105878.
ieee: V. Goncharov, “An easier way to compute 2-cocycles coming from a reduction
for semidirect products,” Journal of Geometry and Physics, vol. 227. Elsevier,
2026.
ista: Goncharov V. 2026. An easier way to compute 2-cocycles coming from a reduction
for semidirect products. Journal of Geometry and Physics. 227, 105878.
mla: Goncharov, Viacheslav. “An Easier Way to Compute 2-Cocycles Coming from a Reduction
for Semidirect Products.” Journal of Geometry and Physics, vol. 227, 105878,
Elsevier, 2026, doi:10.1016/j.geomphys.2026.105878.
short: V. Goncharov, Journal of Geometry and Physics 227 (2026).
corr_author: '1'
date_created: 2026-06-10T07:29:13Z
date_published: 2026-05-21T00:00:00Z
date_updated: 2026-06-16T09:23:39Z
day: '21'
ddc:
- '000'
department:
- _id: GradSch
doi: 10.1016/j.geomphys.2026.105878
external_id:
arxiv:
- '2509.16169'
has_accepted_license: '1'
intvolume: ' 227'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.geomphys.2026.105878
month: '05'
oa: 1
oa_version: Published Version
publication: Journal of Geometry and Physics
publication_identifier:
eissn:
- 1879-1662
issn:
- 0393-0440
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: An easier way to compute 2-cocycles coming from a reduction for semidirect
products
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 227
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21472'
abstract:
- lang: eng
text: We study the ground state energy of a gas of spin 1/2 fermions with repulsive
short-range interactions. We derive an upper bound that agrees, at low density
e, with the Huang–Yang conjecture. The latter captures the first three terms in
an asymptotic low-density expansion, and in particular the Huang–Yang correction
term of order e^7/3. Our trial state is constructed using an adaptation of the
bosonic Bogoliubov theory to the Fermi system, where the correlation structure
of fermionic particles is incorporated by quasi-bosonic Bogoliubov transformations.
In the latter, it is important to consider a modified zero-energy scattering equation
that takes into account the presence of the Fermi sea, in the spirit of the Bethe–Goldstone
equation.
acknowledgement: "We thank the referees for valuable remarks. This work was partially
funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)
via the TRR 352 – Project-ID 470903074. PTN was partially supported by the European
Research Council via the ERC Consolidator Grant RAMBAS – Project-Nr. 10104424.\r\nOpen
access publishing facilitated by Università degli Studi di Milano, as part of the
Wiley - CRUI-CARE agreement."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Emanuela L.
full_name: Giacomelli, Emanuela L.
last_name: Giacomelli
- first_name: Christian
full_name: Hainzl, Christian
last_name: Hainzl
- first_name: Phan Thành
full_name: Nam, Phan Thành
last_name: Nam
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: 'Giacomelli EL, Hainzl C, Nam PT, Seiringer R. The Huang–Yang formula for the
low-density Fermi gas: Upper bound. Communications on Pure and Applied Mathematics.
2026. doi:10.1002/cpa.70040'
apa: 'Giacomelli, E. L., Hainzl, C., Nam, P. T., & Seiringer, R. (2026). The
Huang–Yang formula for the low-density Fermi gas: Upper bound. Communications
on Pure and Applied Mathematics. Wiley. https://doi.org/10.1002/cpa.70040'
chicago: 'Giacomelli, Emanuela L., Christian Hainzl, Phan Thành Nam, and Robert
Seiringer. “The Huang–Yang Formula for the Low-Density Fermi Gas: Upper Bound.”
Communications on Pure and Applied Mathematics. Wiley, 2026. https://doi.org/10.1002/cpa.70040.'
ieee: 'E. L. Giacomelli, C. Hainzl, P. T. Nam, and R. Seiringer, “The Huang–Yang
formula for the low-density Fermi gas: Upper bound,” Communications on Pure
and Applied Mathematics. Wiley, 2026.'
ista: 'Giacomelli EL, Hainzl C, Nam PT, Seiringer R. 2026. The Huang–Yang formula
for the low-density Fermi gas: Upper bound. Communications on Pure and Applied
Mathematics.'
mla: 'Giacomelli, Emanuela L., et al. “The Huang–Yang Formula for the Low-Density
Fermi Gas: Upper Bound.” Communications on Pure and Applied Mathematics,
Wiley, 2026, doi:10.1002/cpa.70040.'
short: E.L. Giacomelli, C. Hainzl, P.T. Nam, R. Seiringer, Communications on Pure
and Applied Mathematics (2026).
date_created: 2026-03-22T23:04:33Z
date_published: 2026-03-13T00:00:00Z
date_updated: 2026-06-18T08:30:39Z
day: '13'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1002/cpa.70040
external_id:
arxiv:
- '2409.17914'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1002/cpa.70040
month: '03'
oa: 1
oa_version: Published Version
publication: Communications on Pure and Applied Mathematics
publication_identifier:
eissn:
- 1097-0312
issn:
- 0010-3640
publication_status: epub_ahead
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The Huang–Yang formula for the low-density Fermi gas: Upper bound'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21767'
abstract:
- lang: eng
text: 'The involvement of non-scientific staff in discussions about animal welfare
and scientific quality is essential for biomedical research progress. In this
study, we developed a survey to collect the self-perception of animal care staff
(ACS) and laboratory technicians about their involvement in scientific planning
and conduct. Participants were contacted to complete an anonymous online questionnaire.
We obtained 850 responses, mainly from Europe: 564 from ACS and 286 from laboratory
technicians. Job satisfaction was assessed as positive by ACS and laboratory technicians
despite the low frequency of culture of care activities and mental health meetings.
Both groups expressed their desire to be trained in research planning and conduct;
however, regular training was not reported. In addition, the inability to act
on animal welfare concerns owing to experimental reasons was reported by both
groups. Over half of the participants felt valued and appreciated by the lead
scientists or animal facility manager; however, it is not clear how they are acknowledged,
as their names on the authors list or in the manuscript acknowledgments are barely
included. Our results indicated that involvement of ACS and laboratory technicians
in planning and conducting studies would improve their understanding of how experiments
are done, and therefore communication processes, work satisfaction, animal welfare,
and scientific quality. Finally, we provided recommendations to improve the engagement
of ACS and laboratory technicians in discussions about animal research planning
and conduct.'
- lang: fre
text: 'La participation de personnel non-scientifique aux discussions sur le bien-être
animal et la qualité scientifique est essentielle aux progrès la recherche biomédicale.
Dans cette étude, nous avons développé une enquête pour recueillir l''auto-perception
du personnel chargé des soins prodigués aux animaux (PCSA) et des techniciens
de laboratoire (TL) sur leur implication dans la planification et la conduite
scientifiques. Les participants ont été contactés pour remplir un questionnaire
anonyme en ligne. Nous avons obtenu 850 réponses, principalement en Europe : 564
provenant de PCSA et 286 de TL. La satisfaction au travail a été évaluée comme
positive par le PCSA et les TL malgré la faible fréquence d’activités sur la culture
des soins et de réunions concernant la santé mentale. Bien que les deux groupes
aient exprimé leur désir d''être formés à la planification et à la conduite de
la recherche, aucune formation réelle régulière n''a été signalée. De plus, l''incapacité
d''agir sur les préoccupations relatives au bien-être animal pour des raisons
expérimentales a été signalée par les deux groupes. Plus de la moitié des participants
se sont sentis valorisés et appréciés par les scientifiques principaux ou le gestionnaire
de l’installation animale mais on ne sait pas clairement comment ils sont reconnus,
car leurs noms sur la liste des auteurs ou dans les remerciements sont à peine
inclus dans la documentation. Nos résultats ont indiqué que la participation du
PCSA et des TL à la planification et à la conduite des études améliorerait leur
compréhension de la façon dont les expériences sont effectuées et, par conséquent,
les processus de communication, leur satisfaction au travail ainsi que le bien-être
animal et la qualité scientifique. Enfin, nous avons formulé des recommandations
pour améliorer la participation du PCSA et des TL aux discussions sur la planification
et la conduite de la recherche animale.'
- lang: ger
text: 'Die Einbeziehung von nichtwissenschaftlichem Personal in Diskussionen über
Tierschutz und wissenschaftliche Qualität ist für Fortschritte in biomedizinischer
Forschung von entscheidender Bedeutung. In dieser Studie haben wir eine Umfrage
entwickelt, um die Selbsteinschätzung von Tierpflegern (ACS) und Labortechnikern
(LT) hinsichtlich ihrer Beteiligung an der wissenschaftlichen Planung und Durchführung
zu erfassen. Die Teilnehmer wurden gebeten, einen anonymen Online-Fragebogen auszufüllen.
Wir erhielten 850 Rückmeldungen, hauptsächlich aus Europa: 564 von ACS und 286
von LT. Die Arbeitszufriedenheit wurde von ACS und LT trotz der geringen Häufigkeit
von Pflegeaktivitäten und Treffen zum Thema psychische Gesundheit als positiv
bewertet. Beide Gruppen äußerten den Wunsch, in der Forschungsplanung und -durchführung
geschult zu werden, doch regelmäßig stattfindende Schulungen wurden nicht berichtet.
Außerdem wurde von beiden Gruppen vermeldet, dass sie aus versuchstechnischen
Gründen nicht in der Lage waren, auf Tierschutzbedenken zu reagieren. Über die
Hälfte der Teilnehmer fühlte sich von den leitenden Wissenschaftlern oder dem
Leiter der Tierhaltungseinrichtung geschätzt und anerkannt; es ist jedoch unklar,
inwiefern sie wirklich gewürdigt werden, da ihre Namen kaum in der Autorenliste
oder in den Danksagungen des Manuskripts aufgeführt sind. Unsere Ergebnisse deuteten
darauf hin, dass die Einbeziehung von ACS und LT in die Planung und Durchführung
von Studien ihr Verständnis für die Durchführung von Experimenten verbessern würde
– und damit auch Kommunikationsprozesse, Arbeitszufriedenheit, Tierwohl und wissenschaftliche
Qualität. Abschließend gaben wir Empfehlungen zur Verbesserung der Einbeziehung
von ACS und LT in Diskussionen über die Planung und Durchführung von Tierversuchen.'
- lang: spa
text: 'La participación del personal no científico en los debates sobre el bienestar
animal y la calidad científica es fundamental para el avance de la investigación
biomédica. En este estudio, desarrollamos una encuesta para recoger la autopercepción
del personal encargado del cuidado de los animales (ACS) y de los técnicos de
laboratorio (LT) sobre su implicación en la planificación y la realización científicas.
Se contactó con los participantes para que cumplimentaran un cuestionario anónimo
en línea. Obtuvimos 850 respuestas, principalmente de Europa: 564 de ACS y 286
de LT. La satisfacción laboral fue evaluada como positiva por ACS y técnicos de
laboratorio a pesar de la baja frecuencia de actividades de cultura del cuidado
y reuniones sobre bienestar mental. Ambos grupos expresaron su deseo de recibir
formación en planificación y realización de investigaciones, sin embargo, no se
informó sobre una formación regular. Asimismo, ambos grupos señalaron la incapacidad
de actuar ante las preocupaciones sobre el bienestar animal por motivos experimentales.
Más de la mitad de los participantes se sintieron valorados y apreciados por los
científicos principales o el responsable de las instalaciones de animales; sin
embargo, no está claro cómo se les reconoce, ya que apenas se incluyen sus nombres
en la lista de autores o en los agradecimientos del manuscrito. Nuestros resultados
indicaron que la participación de los ACS y los LT en la planificación y realización
de los estudios mejoraría su comprensión de cómo se hacen los experimentos y,
por tanto, los procesos de comunicación, la satisfacción laboral, el bienestar
animal y la calidad científica. Finalmente, proporcionamos recomendaciones para
mejorar el compromiso de la AEC y la LT en los debates sobre la planificación
y la realización de investigaciones con animales.'
acknowledgement: "We deeply acknowledge all the animal care staff and laboratory technicians
who participated in this study! We acknowledge Working Groups 1 and 4 from COST
Action IMPROVE (“3Rs concepts to improve the quality of biomedical science”), CA21139,
supported by COST (European Cooperation in Science and Technology) for their feedback
and support. We also acknowledge Aoife Milford for her comments and contributions
to the final draft of the manuscript.\r\nThis publication was based on work from
the COST Action IMPROVE (“3Rs concepts to improve the quality of biomedical science”),
CA21139, supported by COST (European Cooperation in Science and Technology)."
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Fernando
full_name: Gonzalez-Uarquin, Fernando
last_name: Gonzalez-Uarquin
- first_name: Paulin
full_name: Jirkof, Paulin
last_name: Jirkof
- first_name: Bettina
full_name: Bert, Bettina
last_name: Bert
- first_name: Penny
full_name: Hawkins, Penny
last_name: Hawkins
- first_name: Ljupco
full_name: Angelovski, Ljupco
last_name: Angelovski
- first_name: Jan
full_name: Baumgart, Jan
last_name: Baumgart
- first_name: Nadine
full_name: Baumgart, Nadine
last_name: Baumgart
- first_name: Özge S.
full_name: Cevik, Özge S.
last_name: Cevik
- first_name: Nuno H.
full_name: Franco, Nuno H.
last_name: Franco
- first_name: Erdal
full_name: Horata, Erdal
last_name: Horata
- first_name: Rohish
full_name: Kaura, Rohish
last_name: Kaura
- first_name: Winfried
full_name: Neuhaus, Winfried
last_name: Neuhaus
- first_name: Brigida
full_name: Riso, Brigida
last_name: Riso
- first_name: Adrian J.
full_name: Smith, Adrian J.
last_name: Smith
- first_name: Athanassia
full_name: Sotiropoulos, Athanassia
last_name: Sotiropoulos
- first_name: Augusto
full_name: Vitale, Augusto
last_name: Vitale
- first_name: Sophie
full_name: Schober, Sophie
id: 80b0a0ef-4b9f-11ec-b119-8d9d94c4a1d8
last_name: Schober
citation:
ama: 'Gonzalez-Uarquin F, Jirkof P, Bert B, et al. Building bridges: Involvement
of animal care staff and laboratory technicians in experimental planning and conduct
of animal studies for better job satisfaction and science. Laboratory Animals.
2026. doi:10.1177/00236772251400976'
apa: 'Gonzalez-Uarquin, F., Jirkof, P., Bert, B., Hawkins, P., Angelovski, L., Baumgart,
J., … Schober, S. (2026). Building bridges: Involvement of animal care staff and
laboratory technicians in experimental planning and conduct of animal studies
for better job satisfaction and science. Laboratory Animals. SAGE Publications.
https://doi.org/10.1177/00236772251400976'
chicago: 'Gonzalez-Uarquin, Fernando, Paulin Jirkof, Bettina Bert, Penny Hawkins,
Ljupco Angelovski, Jan Baumgart, Nadine Baumgart, et al. “Building Bridges: Involvement
of Animal Care Staff and Laboratory Technicians in Experimental Planning and Conduct
of Animal Studies for Better Job Satisfaction and Science.” Laboratory Animals.
SAGE Publications, 2026. https://doi.org/10.1177/00236772251400976.'
ieee: 'F. Gonzalez-Uarquin et al., “Building bridges: Involvement of animal
care staff and laboratory technicians in experimental planning and conduct of
animal studies for better job satisfaction and science,” Laboratory Animals.
SAGE Publications, 2026.'
ista: 'Gonzalez-Uarquin F, Jirkof P, Bert B, Hawkins P, Angelovski L, Baumgart J,
Baumgart N, Cevik ÖS, Franco NH, Horata E, Kaura R, Neuhaus W, Riso B, Smith AJ,
Sotiropoulos A, Vitale A, Schober S. 2026. Building bridges: Involvement of animal
care staff and laboratory technicians in experimental planning and conduct of
animal studies for better job satisfaction and science. Laboratory Animals.'
mla: 'Gonzalez-Uarquin, Fernando, et al. “Building Bridges: Involvement of Animal
Care Staff and Laboratory Technicians in Experimental Planning and Conduct of
Animal Studies for Better Job Satisfaction and Science.” Laboratory Animals,
SAGE Publications, 2026, doi:10.1177/00236772251400976.'
short: F. Gonzalez-Uarquin, P. Jirkof, B. Bert, P. Hawkins, L. Angelovski, J. Baumgart,
N. Baumgart, Ö.S. Cevik, N.H. Franco, E. Horata, R. Kaura, W. Neuhaus, B. Riso,
A.J. Smith, A. Sotiropoulos, A. Vitale, S. Schober, Laboratory Animals (2026).
date_created: 2026-04-26T22:01:47Z
date_published: 2026-04-14T00:00:00Z
date_updated: 2026-06-18T08:33:36Z
day: '14'
ddc:
- '570'
department:
- _id: PreCl
doi: 10.1177/00236772251400976
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1177/00236772251400976
month: '04'
oa: 1
oa_version: Published Version
publication: Laboratory Animals
publication_identifier:
eissn:
- 1758-1117
issn:
- 0023-6772
publication_status: epub_ahead
publisher: SAGE Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Building bridges: Involvement of animal care staff and laboratory technicians
in experimental planning and conduct of animal studies for better job satisfaction
and science'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21759'
abstract:
- lang: eng
text: 'Promoters and enhancers are cis-regulatory elements (CREs), DNA sequences
that bind transcription factor (TF) proteins to up- or down-regulate target genes.
Decades-long efforts yielded TF-DNA interaction models that predict how strongly
an individual TF binds arbitrary DNA sequences and how individual binding events
on the CRE combine to affect gene expression. These insights can be synthesized
into a global, biophysically realistic, and quantitative genotype-phenotype (GP)
map for gene regulation, a ‘holy grail’ for the application of evolutionary theory.
A global map provides a rare opportunity to simulate the long-term evolution of
regulatory sequences and pose several fundamental questions: How long does it
take to evolve CREs de novo? How many non-trivial regulatory functions exist in
sequence space? How connected are they? For which regulatory architecture is CRE
evolution most rapid and evolvable? In this article, the second of a two-part
series, we review the application of evolutionary concepts — epistasis, robustness,
evolvability, tunability, plasticity, and bet-hedging — to the evolution of gene
regulatory sequences. We then evaluate the potential for a unifying theory for
the evolution of regulatory sequences and identify key open challenges.'
acknowledgement: "We thank Calin Guet and Santiago Herrera-Álvarez for essential contributions
to this manuscript.\r\nE.M. acknowledges support from the APART-USA fellowship,
jointly funded by the Austrian Academy of Sciences (ÖAW) and the Institute of Science
and Technology Austria (ISTA). N.B. acknowledges funding from the ERC Advanced Grant
101055327 “HaplotypeStructure”.\r\nThis study was also supported by the European
Molecular Biology Laboratory (N.O.B., J.C.)."
article_number: '102472'
article_processing_charge: Yes (via OA deal)
article_type: review
author:
- first_name: Elia
full_name: Mascolo, Elia
id: 776a6ed0-a053-11f0-8635-80b95e0e0d53
last_name: Mascolo
orcid: 0000-0003-2977-7844
- first_name: Reka E
full_name: Körei, Reka E
id: 50FDE43E-AA30-11E9-A72B-8A12E6697425
last_name: Körei
- first_name: Noa O.
full_name: Borst, Noa O.
last_name: Borst
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Justin
full_name: Crocker, Justin
last_name: Crocker
- first_name: Gašper
full_name: Tkačik, Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: 0000-0002-6699-1455
citation:
ama: 'Mascolo E, Körei RE, Borst NO, Barton NH, Crocker J, Tkačik G. Long-term evolution
of regulatory DNA sequences. Part 2: Theory and future challenges. Current
Opinion in Genetics and Development. 2026;98. doi:10.1016/j.gde.2026.102472'
apa: 'Mascolo, E., Körei, R. E., Borst, N. O., Barton, N. H., Crocker, J., &
Tkačik, G. (2026). Long-term evolution of regulatory DNA sequences. Part 2: Theory
and future challenges. Current Opinion in Genetics and Development. Elsevier.
https://doi.org/10.1016/j.gde.2026.102472'
chicago: 'Mascolo, Elia, Reka E Körei, Noa O. Borst, Nicholas H Barton, Justin Crocker,
and Gašper Tkačik. “Long-Term Evolution of Regulatory DNA Sequences. Part 2: Theory
and Future Challenges.” Current Opinion in Genetics and Development. Elsevier,
2026. https://doi.org/10.1016/j.gde.2026.102472.'
ieee: 'E. Mascolo, R. E. Körei, N. O. Borst, N. H. Barton, J. Crocker, and G. Tkačik,
“Long-term evolution of regulatory DNA sequences. Part 2: Theory and future challenges,”
Current Opinion in Genetics and Development, vol. 98. Elsevier, 2026.'
ista: 'Mascolo E, Körei RE, Borst NO, Barton NH, Crocker J, Tkačik G. 2026. Long-term
evolution of regulatory DNA sequences. Part 2: Theory and future challenges. Current
Opinion in Genetics and Development. 98, 102472.'
mla: 'Mascolo, Elia, et al. “Long-Term Evolution of Regulatory DNA Sequences. Part
2: Theory and Future Challenges.” Current Opinion in Genetics and Development,
vol. 98, 102472, Elsevier, 2026, doi:10.1016/j.gde.2026.102472.'
short: E. Mascolo, R.E. Körei, N.O. Borst, N.H. Barton, J. Crocker, G. Tkačik, Current
Opinion in Genetics and Development 98 (2026).
corr_author: '1'
date_created: 2026-04-26T22:01:46Z
date_published: 2026-04-15T00:00:00Z
date_updated: 2026-06-18T08:34:09Z
day: '15'
ddc:
- '570'
department:
- _id: GaTk
- _id: NiBa
doi: 10.1016/j.gde.2026.102472
intvolume: ' 98'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.gde.2026.102472
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: bd6958e0-d553-11ed-ba76-86eba6a76c00
grant_number: '101055327'
name: Understanding the evolution of continuous genomes
publication: Current Opinion in Genetics and Development
publication_identifier:
eissn:
- 1879-0380
issn:
- 0959-437X
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Long-term evolution of regulatory DNA sequences. Part 2: Theory and future
challenges'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 98
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21483'
abstract:
- lang: eng
text: 'Embryogenesis in the model plant Arabidopsis thaliana provides a framework
for understanding how cell polarity and patterning coordinate with hormonal signalling
to establish the plant body plan. Following fertilisation, the zygote divides
asymmetrically to generate apical and basal lineages, establishing the apical–basal
axis that defines future shoot and root poles. Genetic and molecular analyses
of classical mutants including gnom, monopteros (mp), bodenlos (bdl) and topless
revealed that localised auxin biosynthesis, directional transport and downstream
transcriptional responses are central to apical–basal axis establishment and organ
initiation. The main components of this regulation are polarly localised PIN auxin
transporters and downstream modules involving MONOPTEROS and WUSCHEL-RELATED HOMEOBOX
transcription factors. Advances in microscopy have transformed the study of Arabidopsis
embryogenesis: fluorescence-compatible clearing reagents and three-dimensional
reconstructions now permit quantitative analyses of cell geometry, division orientation,
and cytoskeletal dynamics. Live ovule imaging setups with confocal laser scanning
and multiphoton microscopes enable real-time observation of embryo development,
while laser-assisted cell ablation can be used to probe cell-to-cell communication
and fate plasticity. Together, these methodological breakthroughs position Arabidopsis
embryos as a prime model for dissecting the chemical and biophysical cues that
shape plant development.'
acknowledgement: The authors would like to acknowledge the many colleagues whose valuable
contributions to the field could not be included in this review due to space limitations
and reference constraints. Open Access funding provided by Institute of Science
and Technology Austria/KEMÖ.
article_number: nph.71072
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: David
full_name: Babic, David
id: db566d23-f6e0-11ea-865d-e6f270e968e7
last_name: Babic
- first_name: Milan
full_name: Zupunski, Milan
id: f6a21fce-573e-11f0-a150-a8d96aee2539
last_name: Zupunski
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Babic D, Zupunski M, Friml J. Imaging and genetic toolbox to study Arabidopsis
embryogenesis. New Phytologist. 2026. doi:10.1111/nph.71072
apa: Babic, D., Zupunski, M., & Friml, J. (2026). Imaging and genetic toolbox
to study Arabidopsis embryogenesis. New Phytologist. Wiley. https://doi.org/10.1111/nph.71072
chicago: Babic, David, Milan Zupunski, and Jiří Friml. “Imaging and Genetic Toolbox
to Study Arabidopsis Embryogenesis.” New Phytologist. Wiley, 2026. https://doi.org/10.1111/nph.71072.
ieee: D. Babic, M. Zupunski, and J. Friml, “Imaging and genetic toolbox to study
Arabidopsis embryogenesis,” New Phytologist. Wiley, 2026.
ista: Babic D, Zupunski M, Friml J. 2026. Imaging and genetic toolbox to study Arabidopsis
embryogenesis. New Phytologist., nph. 71072.
mla: Babic, David, et al. “Imaging and Genetic Toolbox to Study Arabidopsis Embryogenesis.”
New Phytologist, nph. 71072, Wiley, 2026, doi:10.1111/nph.71072.
short: D. Babic, M. Zupunski, J. Friml, New Phytologist (2026).
corr_author: '1'
date_created: 2026-03-23T14:59:06Z
date_published: 2026-03-11T00:00:00Z
date_updated: 2026-06-18T08:31:45Z
day: '11'
ddc:
- '580'
department:
- _id: JiFr
- _id: GradSch
doi: 10.1111/nph.71072
external_id:
pmid:
- '41808651'
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1111/nph.71072
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: New Phytologist
publication_identifier:
eissn:
- 1469-8137
issn:
- 0028-646X
publication_status: epub_ahead
publisher: Wiley
quality_controlled: '1'
status: public
title: Imaging and genetic toolbox to study Arabidopsis embryogenesis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21484'
abstract:
- lang: eng
text: An individual's phenotype reflects a complex interplay of the direct effects
of their DNA, epigenetic modifications of their DNA induced by their parents,
and indirect effects of their parents' DNA. Here, we derive how the genetic variance
within a population is changed under the influence of indirect maternal, paternal
and parent-of-origin effects under random mating. We also consider indirect effects
of a sibling, in particular how the genetic variance is altered when looking at
the phenotypic difference between two siblings. The calculations are then extended
to include assortative mating (AM), which alters the variance by inducing increased
homozygosity and correlations within and across loci. AM likely leads to covariance
of parental genetic effects, a measure of the similarity of parents in the indirect
effects they have on their children. We propose that this assortment for parental
characteristics, where biological parents create similar environments for their
children, can create shared parental effects across traits and the appearance
of cross-trait AM. Our theory shows how the resemblance among relatives increases
under both AM, indirect and parent-of-origin effects. When our model is used to
predict correlations among relatives in human height, we find that explaining
the patterns observed in real data requires both indirect genetic effects and
assortative mating. The degree to which direct, indirect and epigenetic effects
shape the phenotypic variance of complex traits remains an open question that
requires large-scale family data to be resolved.
acknowledgement: We thank members of the Medical Genomics group at ISTA for their
comments, which improved this manuscript. This work was funded by an SNSF Eccellenza
Grant to MRR (PCEGP3-181181), and by core funding from the Institute of Science
and Technology Austria.
article_number: iyag042
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Ilse
full_name: Krätschmer, Ilse
id: 30d4014e-7753-11eb-b44b-db6d61112e73
last_name: Krätschmer
orcid: 0000-0002-5636-9259
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
citation:
ama: Krätschmer I, Robinson MR. A quantitative genetic model for indirect genetic
effects and genomic imprinting under random and assortative mating. Genetics.
2026. doi:10.1093/genetics/iyag042
apa: Krätschmer, I., & Robinson, M. R. (2026). A quantitative genetic model
for indirect genetic effects and genomic imprinting under random and assortative
mating. Genetics. Oxford University Press. https://doi.org/10.1093/genetics/iyag042
chicago: Krätschmer, Ilse, and Matthew Richard Robinson. “A Quantitative Genetic
Model for Indirect Genetic Effects and Genomic Imprinting under Random and Assortative
Mating.” Genetics. Oxford University Press, 2026. https://doi.org/10.1093/genetics/iyag042.
ieee: I. Krätschmer and M. R. Robinson, “A quantitative genetic model for indirect
genetic effects and genomic imprinting under random and assortative mating,” Genetics.
Oxford University Press, 2026.
ista: Krätschmer I, Robinson MR. 2026. A quantitative genetic model for indirect
genetic effects and genomic imprinting under random and assortative mating. Genetics.,
iyag042.
mla: Krätschmer, Ilse, and Matthew Richard Robinson. “A Quantitative Genetic Model
for Indirect Genetic Effects and Genomic Imprinting under Random and Assortative
Mating.” Genetics, iyag042, Oxford University Press, 2026, doi:10.1093/genetics/iyag042.
short: I. Krätschmer, M.R. Robinson, Genetics (2026).
corr_author: '1'
date_created: 2026-03-23T15:02:54Z
date_published: 2026-02-12T00:00:00Z
date_updated: 2026-06-18T08:31:14Z
day: '12'
ddc:
- '570'
department:
- _id: MaRo
doi: 10.1093/genetics/iyag042
external_id:
pmid:
- '41677404'
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/genetics/iyag042
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Genetics
publication_identifier:
issn:
- 1943-2631
publication_status: epub_ahead
publisher: Oxford University Press
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/medical-genomics-group/familyMC
status: public
title: A quantitative genetic model for indirect genetic effects and genomic imprinting
under random and assortative mating
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21502'
abstract:
- lang: eng
text: The mammalian brain stores glucose, the main circulating energy substrate,
as glycogen. In rodents, the cerebellum contains relatively high glycogen levels,
yet its cellular and subcellular distribution remains poorly defined. Using monoclonal
antibodies against glycogen, we examined its distribution in the mouse cerebellar
cortex. Glycogen was predominantly localized to Bergmann glia (BG) processes in
the molecular layer and was also detected in Purkinje cells (PCs), the principal
cerebellar neurons. To assess the functional significance of cerebellar glycogen,
we analyzed behavior in mice lacking glycogen synthase 1 (Gys1) in BG or PCs using
a floxed Gys1 line. Gys1 deficiency in either PCs or GFAP-positive cells reduced
anxiety-like behavior, whereas combined deletion caused PC degeneration and ataxia.
These findings reveal a critical role for glycogen metabolism in both astrocytes
and neurons in cerebellar function.
acknowledgement: This work was supported by the Novo Nordisk Foundation (NNFOC0058058,
H. Hirase), the Danmarks Frie Forskningsfond (0134-00107B and 5283-00069A, H.Hirase),
the Lundbeck Foundation, Japan Society for the Promotion of Science Grants-in-Aid
for Scientific Research (KAKENHI) program (22K06454/24H01221, A.K.; 23K27482, H.Hirai),
the Japan Agency for Medical Research and Development (AMED) Brain Mapping by Integrated
Neurotechnologies for Disease Studies (Brain/MINDS) (JP21dm0207111, H. Hirai), AMED
Brain/MINDS 2.0 (JP23wm0625001 and JP24wm0625103, H. Hirai), and grants from the
Spanish Ministerio de Ciencia e Innovación (MCIU/FEDER/AEI) (PID2020-118699 GB-100,
J.D.) and the Fundación Ramón Areces (J.D.). Sonam Akther has been supported by
the RIKEN IPA fellowship. We are thankful to Dr. Yuki Oe for his support in the
initial stage of this study and to Dan Xue for his help with the graphical abstract.
We thank Dr. Pia Weikop for providing CTN research infrastructure. The authors declare
no competing financial interests.
article_number: '115192'
article_processing_charge: Yes
article_type: original
author:
- first_name: Sonam
full_name: Akther, Sonam
last_name: Akther
- first_name: Ashley Bomin
full_name: Lee, Ashley Bomin
last_name: Lee
- first_name: Ayumu
full_name: Konno, Ayumu
last_name: Konno
- first_name: Antonis
full_name: Asiminas, Antonis
last_name: Asiminas
- first_name: Marta
full_name: Vittani, Marta
last_name: Vittani
- first_name: Tsuneko
full_name: Mishima, Tsuneko
last_name: Mishima
- first_name: Hirokazu
full_name: Hirai, Hirokazu
last_name: Hirai
- first_name: Claire Francesca
full_name: Meehan, Claire Francesca
last_name: Meehan
- first_name: Jordi
full_name: Duran, Jordi
last_name: Duran
- first_name: Joan
full_name: Guinovart, Joan
last_name: Guinovart
- first_name: Hitoshi
full_name: Ashida, Hitoshi
last_name: Ashida
- first_name: Tsuyoshi
full_name: Morita, Tsuyoshi
last_name: Morita
- first_name: Otto
full_name: Baba, Otto
last_name: Baba
- first_name: Ryuichi
full_name: Shigemoto, Ryuichi
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Maiken
full_name: Nedergaard, Maiken
last_name: Nedergaard
- first_name: Hajime
full_name: Hirase, Hajime
last_name: Hirase
citation:
ama: Akther S, Lee AB, Konno A, et al. Distribution and functional significance
of rodent cerebellar glycogen. iScience. 2026;29(4). doi:10.1016/j.isci.2026.115192
apa: Akther, S., Lee, A. B., Konno, A., Asiminas, A., Vittani, M., Mishima, T.,
… Hirase, H. (2026). Distribution and functional significance of rodent cerebellar
glycogen. IScience. Elsevier. https://doi.org/10.1016/j.isci.2026.115192
chicago: Akther, Sonam, Ashley Bomin Lee, Ayumu Konno, Antonis Asiminas, Marta Vittani,
Tsuneko Mishima, Hirokazu Hirai, et al. “Distribution and Functional Significance
of Rodent Cerebellar Glycogen.” IScience. Elsevier, 2026. https://doi.org/10.1016/j.isci.2026.115192.
ieee: S. Akther et al., “Distribution and functional significance of rodent
cerebellar glycogen,” iScience, vol. 29, no. 4. Elsevier, 2026.
ista: Akther S, Lee AB, Konno A, Asiminas A, Vittani M, Mishima T, Hirai H, Meehan
CF, Duran J, Guinovart J, Ashida H, Morita T, Baba O, Shigemoto R, Nedergaard
M, Hirase H. 2026. Distribution and functional significance of rodent cerebellar
glycogen. iScience. 29(4), 115192.
mla: Akther, Sonam, et al. “Distribution and Functional Significance of Rodent Cerebellar
Glycogen.” IScience, vol. 29, no. 4, 115192, Elsevier, 2026, doi:10.1016/j.isci.2026.115192.
short: S. Akther, A.B. Lee, A. Konno, A. Asiminas, M. Vittani, T. Mishima, H. Hirai,
C.F. Meehan, J. Duran, J. Guinovart, H. Ashida, T. Morita, O. Baba, R. Shigemoto,
M. Nedergaard, H. Hirase, IScience 29 (2026).
date_created: 2026-03-29T22:07:07Z
date_published: 2026-03-17T00:00:00Z
date_updated: 2026-06-18T08:32:22Z
day: '17'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1016/j.isci.2026.115192
external_id:
pmid:
- '41890976'
intvolume: ' 29'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.isci.2026.115192
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: iScience
publication_identifier:
eissn:
- 2589-0042
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Distribution and functional significance of rodent cerebellar glycogen
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '21436'
abstract:
- lang: eng
text: 'The cobalt-intercalated transition metal dichalcogenide CoxTaS2 hosts a rich
landscape of magnetic phases that depend sensitively on x. While the stoichiometric
compound with x = 1/3 exhibits a single magnetic transition, samples with x≤0.325
display two transitions with an anomalous Hall effect (AHE) emerging in the lower
temperature phase. Here, we resolve the spin structure in each phase by employing
a suite of magneto-optical probes that include the discovery of anomalous magneto-birefringence:
a spontaneous time-reversal sensitive rotation of the principal optic axes. A
symmetry-based analysis identifies the AHE-active phase as an anisotropic (2+1)Q
state, in which magnetic modulation at one wavevector (Q) differs in symmetry
from that at the remaining two. The (2+1)Q state naturally exhibits scalar spin
chirality as a mechanism for the AHE and expands the classification of multi-Q
magnetic phases.'
acknowledgement: 'We thank Linda Ye and Yue Sun for helpful discussion. Experimental
and theoretical work at LBNL and UC Berkeley was funded by the Quantum Materials
(KC2202) program under the U.S. Department of Energy, Office of Science, Office
of Basic Energy Sciences, Materials Sciences and Engineering Division under Contract
No. DE-AC02-05CH11231. V.S. and J.O. received support from the Gordon and Betty
Moore Foundation’s EPiQS Initiative through Grant GBMF4537 to J.O. at UC Berkeley.
J.K. received support from the National Science Foundation Graduate Research Fellowship
Program under Grant No. 2146752. Any opinions, findings, and conclusions or recommendations
expressed in this material are those of the author(s) and do not necessarily reflect
the views of the National Science Foundation. During the preparation of this manuscript,
we became aware of the following related work: refs. 56,57,58.'
article_number: '2507.12588'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Jonathon
full_name: Kruppe, Jonathon
last_name: Kruppe
- first_name: Josue
full_name: Rodriguez, Josue
last_name: Rodriguez
- first_name: Catherine
full_name: Xu, Catherine
last_name: Xu
- first_name: James
full_name: Analytis, James
last_name: Analytis
- first_name: Joseph
full_name: Orenstein, Joseph
last_name: Orenstein
- first_name: Veronika
full_name: Sunko, Veronika
id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
last_name: Sunko
orcid: 0000-0003-2724-3523
citation:
ama: Kruppe J, Rodriguez J, Xu C, Analytis J, Orenstein J, Sunko V. Anisotropic
multi-Q order in CoxTaS2. npj Quantum Materials. 2026. doi:10.1038/s41535-026-00856-w
apa: Kruppe, J., Rodriguez, J., Xu, C., Analytis, J., Orenstein, J., & Sunko,
V. (2026). Anisotropic multi-Q order in CoxTaS2. Npj Quantum Materials.
Springer Nature. https://doi.org/10.1038/s41535-026-00856-w
chicago: Kruppe, Jonathon, Josue Rodriguez, Catherine Xu, James Analytis, Joseph
Orenstein, and Veronika Sunko. “Anisotropic Multi-Q Order in CoxTaS2.” Npj
Quantum Materials. Springer Nature, 2026. https://doi.org/10.1038/s41535-026-00856-w.
ieee: J. Kruppe, J. Rodriguez, C. Xu, J. Analytis, J. Orenstein, and V. Sunko, “Anisotropic
multi-Q order in CoxTaS2,” npj Quantum Materials. Springer Nature, 2026.
ista: Kruppe J, Rodriguez J, Xu C, Analytis J, Orenstein J, Sunko V. 2026. Anisotropic
multi-Q order in CoxTaS2. npj Quantum Materials., 2507.12588.
mla: Kruppe, Jonathon, et al. “Anisotropic Multi-Q Order in CoxTaS2.” Npj Quantum
Materials, 2507.12588, Springer Nature, 2026, doi:10.1038/s41535-026-00856-w.
short: J. Kruppe, J. Rodriguez, C. Xu, J. Analytis, J. Orenstein, V. Sunko, Npj
Quantum Materials (2026).
corr_author: '1'
date_created: 2026-03-11T10:39:55Z
date_published: 2026-04-09T00:00:00Z
date_updated: 2026-06-18T08:32:52Z
day: '09'
ddc:
- '530'
department:
- _id: VeSu
doi: 10.1038/s41535-026-00856-w
external_id:
arxiv:
- '2507.12588'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1038/s41535-026-00856-w
month: '04'
oa: 1
oa_version: Published Version
publication: npj Quantum Materials
publication_identifier:
eissn:
- 2397-4648
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Anisotropic multi-Q order in CoxTaS2
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21986'
abstract:
- lang: eng
text: Over the past two decades, molecular electronics has made significant progress
toward discovering nanoscale analogues of conventional electronic components,
largely enabled by the development of the scanning tunneling microscope-based
break-junction (STM-BJ) technique. The STM-BJ technique enables precise and highly
reproducible measurement of a molecule’s electronic transport properties, making
it a powerful technique to explore physiochemical and electrochemical phenomena
that are otherwise difficult to access. It has gained substantial popularity in
the past 20 years, with experiments becoming increasingly diverse and sophisticated.
Despite the wealth of literature, an accessible, practical guide to performing
STM-BJ experiments and interpreting the data is largely absent. This tutorial
includes a brief background into the development of STM-BJ measurements, followed
by detailed explanations of instrumentation, data collection, statistical analysis,
variations on standard experiments, and some troubleshooting methods. It is aimed
at researchers looking to begin or improve STM-BJ studies in their laboratories,
graduate students and postdoctoral researchers learning the technique, and readers
seeking to critically evaluate the growing body of STM-BJ literature.
acknowledgement: We thank Michael Inkpen, Timothy Su, Masha Kamenetska, and Wanzhuo
Shi for comments and Jyotisman Hazarika for data collection. This work was supported
in part by the National Science Foundation (NSF-DMR 2241180) and by the Institute
of Science and Technology Austria.
article_processing_charge: Yes
article_type: original
author:
- first_name: Emma
full_name: York, Emma
id: 08dde91e-8e0a-11f0-9d7d-9e8d80864f16
last_name: York
- first_name: Latha
full_name: Venkataraman, Latha
id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
last_name: Venkataraman
orcid: 0000-0002-6957-6089
citation:
ama: York E, Venkataraman L. Scanning tunneling microscope-based break-junction
technique - A tutorial. ACS Physical Chemistry Au. 2026;6(3):408-424. doi:10.1021/acsphyschemau.6c00026
apa: York, E., & Venkataraman, L. (2026). Scanning tunneling microscope-based
break-junction technique - A tutorial. ACS Physical Chemistry Au. American
Chemical Society. https://doi.org/10.1021/acsphyschemau.6c00026
chicago: York, Emma, and Latha Venkataraman. “Scanning Tunneling Microscope-Based
Break-Junction Technique - A Tutorial.” ACS Physical Chemistry Au. American
Chemical Society, 2026. https://doi.org/10.1021/acsphyschemau.6c00026.
ieee: E. York and L. Venkataraman, “Scanning tunneling microscope-based break-junction
technique - A tutorial,” ACS Physical Chemistry Au, vol. 6, no. 3. American
Chemical Society, pp. 408–424, 2026.
ista: York E, Venkataraman L. 2026. Scanning tunneling microscope-based break-junction
technique - A tutorial. ACS Physical Chemistry Au. 6(3), 408–424.
mla: York, Emma, and Latha Venkataraman. “Scanning Tunneling Microscope-Based Break-Junction
Technique - A Tutorial.” ACS Physical Chemistry Au, vol. 6, no. 3, American
Chemical Society, 2026, pp. 408–24, doi:10.1021/acsphyschemau.6c00026.
short: E. York, L. Venkataraman, ACS Physical Chemistry Au 6 (2026) 408–424.
corr_author: '1'
date_created: 2026-06-10T07:38:41Z
date_published: 2026-05-04T00:00:00Z
date_updated: 2026-06-19T06:35:58Z
day: '04'
ddc:
- '540'
department:
- _id: LaVe
doi: 10.1021/acsphyschemau.6c00026
external_id:
pmid:
- '42221941'
file:
- access_level: open_access
checksum: 1dc16bdfb1c1cd3acde802f4350cb42a
content_type: application/pdf
creator: dernst
date_created: 2026-06-19T06:31:16Z
date_updated: 2026-06-19T06:31:16Z
file_id: '22020'
file_name: 2026_ACSPhysChem_York.pdf
file_size: 11251172
relation: main_file
success: 1
file_date_updated: 2026-06-19T06:31:16Z
has_accepted_license: '1'
intvolume: ' 6'
issue: '3'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 408-424
pmid: 1
publication: ACS Physical Chemistry Au
publication_identifier:
eissn:
- 2694-2445
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Scanning tunneling microscope-based break-junction technique - A tutorial
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21987'
abstract:
- lang: eng
text: 'We introduce JODIE, a genetic joint modeling approach that estimates how
DNA loci influence human traits by partitioning genetic effects into four components:
direct effects (from a child’s alleles), indirect maternal and paternal effects
(from parents’ alleles), and parent-of-origin (PofO) effects (dependent on parental
transmission of alleles), while uniquely accounting for assortative mating. We
analyze 30,000 child-mother-father trios from the Estonian Biobank and the Norwegian
Mother, Father, and Child Cohort, focusing on height, body mass index, and childhood
educational test scores. We find direct effects to be the largest contributor
to trait variation, but combined, indirect parental and PofO effects are similarly
substantial. We support our results by within-family genome-wide association testing
and identify 276 independently associated DNA regions with a complex interplay
between direct, indirect, and PofO effects. By joint modeling, we show that direct,
indirect, and PofO effects collectively shape human phenotypic variation across
loci genome-wide.'
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "We thank Zoltan Kutalik, Peter Visscher, and members of the Robinson
group at ISTA for their comments, which improved this manuscript. This work was
funded by an SNSF Eccellenza Grant to M.R.R. (PCEGP3-181181) and by core funding
from the Institute of Science and Technology Austria.\r\nThe Norwegian Mother, Father,
and Child Cohort Study is supported by the Norwegian Ministry of Health and Care
Services and the Ministry of Education and Research. We are grateful to all the
participating families in Norway who take part in this on-going cohort study. We
thank the Norwegian Institute of Public Health (NIPH) for generating high-quality
genomic data. The research is part of the HARVEST collaboration, supported by the
Research Council of Norway (#229624). We also thank the NORMENT Center for providing
genotype data, funded by the Research Council of Norway (#223273), South East Norway
Health Authorities, and Stiftelsen Kristian Gerhard Jebsen, and in collaboration
with deCODE Genetics. We further thank the Center for Diabetes Research, the University
of Bergen for providing genotype data funded by the ERC AdG project SELECTionPREDISPOSED,
Stiftelsen Kristian Gerhard Jebsen, Trond Mohn Foundation, the Research Council
of Norway, the Novo Nordisk Foundation, the University of Bergen, and the Western
Norway Health Authorities. The MoBa work was performed on the TSD (Tjeneste for
Sensitive Data) facilities, owned by the University of Oslo, operated and developed
by the TSD service group at the University of Oslo, IT Department (USIT, tsd-drift@usit.uio.no).
E.Y. is supported by the European Union (grant numbers 101045526 and 101073237)
and the Research Council of Norway (grant numbers 336078, 288083, and 331640).\r\nWe
would like to acknowledge the participants and investigators of the Generation Scotland
Cohort study. Generation Scotland received core support from the Chief Scientist
Office of the Scottish Government Health Directorates (CZD/16/6) and the Scottish
Funding Council (HR03006). Genotyping and methylation typing of the GS:SFHS samples
was carried out by the Genetics Core Laboratory at the Wellcome Trust Clinical Research
Facility, Edinburgh, Scotland and was funded by the Medical Research Council UK
and the Wellcome Trust (Wellcome Trust Strategic Award “STratifying Resilience and
Depression Longitudinally” [STRADL] ref. 104036/Z/14/Z).\r\nWe would like to thank
and acknowledge the participants and investigators of the Estonian Biobank (EstBB)
study. The research was conducted using the Estonian Center of Genomics/Roadmap
II funded by the Estonian Research Council (project number TT17).\r\nNorwegian analyses
were performed on resources provided by Sigma2 - the National Infrastructure for
High-Performance Computing and Data Storage in Norway. Estonian Data analysis was
carried out in the High-Performance Computing Center cloud provided by University
of Tartu. Analysis of the Generation Scotland data and the summary statistics obtained
from the other analyses was conducted at IST Austria and is supported by the Scientific
Service Units (SSU) of IST Austria through resources provided by Scientific Computing
(SciComp)."
article_number: '101277'
article_processing_charge: Yes
article_type: original
author:
- first_name: Ilse
full_name: Krätschmer, Ilse
id: 30d4014e-7753-11eb-b44b-db6d61112e73
last_name: Krätschmer
orcid: 0000-0002-5636-9259
- first_name: Laura
full_name: Hegemann, Laura
last_name: Hegemann
- first_name: Robin J.
full_name: Hofmeister, Robin J.
last_name: Hofmeister
- first_name: Elizabeth C.
full_name: Corfield, Elizabeth C.
last_name: Corfield
- first_name: Mahdi
full_name: Mahmoudi, Mahdi
last_name: Mahmoudi
- first_name: Olivier
full_name: Delaneau, Olivier
last_name: Delaneau
- first_name: Ole A.
full_name: Andreassen, Ole A.
last_name: Andreassen
- first_name: Archie
full_name: Campbell, Archie
last_name: Campbell
- first_name: Caroline
full_name: Hayward, Caroline
last_name: Hayward
- first_name: Riccardo E.
full_name: Marioni, Riccardo E.
last_name: Marioni
- first_name: Eivind
full_name: Ystrom, Eivind
last_name: Ystrom
- first_name: Alexandra
full_name: Havdahl, Alexandra
last_name: Havdahl
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
citation:
ama: Krätschmer I, Hegemann L, Hofmeister RJ, et al. Separating direct, indirect,
and parent-of-origin genetic effects in the human population. Cell Genomics.
doi:10.1016/j.xgen.2026.101277
apa: Krätschmer, I., Hegemann, L., Hofmeister, R. J., Corfield, E. C., Mahmoudi,
M., Delaneau, O., … Robinson, M. R. (n.d.). Separating direct, indirect, and parent-of-origin
genetic effects in the human population. Cell Genomics. Elsevier. https://doi.org/10.1016/j.xgen.2026.101277
chicago: Krätschmer, Ilse, Laura Hegemann, Robin J. Hofmeister, Elizabeth C. Corfield,
Mahdi Mahmoudi, Olivier Delaneau, Ole A. Andreassen, et al. “Separating Direct,
Indirect, and Parent-of-Origin Genetic Effects in the Human Population.” Cell
Genomics. Elsevier, n.d. https://doi.org/10.1016/j.xgen.2026.101277.
ieee: I. Krätschmer et al., “Separating direct, indirect, and parent-of-origin
genetic effects in the human population,” Cell Genomics. Elsevier.
ista: Krätschmer I, Hegemann L, Hofmeister RJ, Corfield EC, Mahmoudi M, Delaneau
O, Andreassen OA, Campbell A, Hayward C, Marioni RE, Ystrom E, Havdahl A, Robinson
MR. Separating direct, indirect, and parent-of-origin genetic effects in the human
population. Cell Genomics., 101277.
mla: Krätschmer, Ilse, et al. “Separating Direct, Indirect, and Parent-of-Origin
Genetic Effects in the Human Population.” Cell Genomics, 101277, Elsevier,
doi:10.1016/j.xgen.2026.101277.
short: I. Krätschmer, L. Hegemann, R.J. Hofmeister, E.C. Corfield, M. Mahmoudi,
O. Delaneau, O.A. Andreassen, A. Campbell, C. Hayward, R.E. Marioni, E. Ystrom,
A. Havdahl, M.R. Robinson, Cell Genomics (n.d.).
corr_author: '1'
date_created: 2026-06-10T07:39:08Z
date_published: 2026-06-09T00:00:00Z
date_updated: 2026-06-19T07:00:47Z
day: '09'
department:
- _id: MaRo
doi: 10.1016/j.xgen.2026.101277
external_id:
pmid:
- '40909755'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.xgen.2026.101277
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 9B8D11D6-BA93-11EA-9121-9846C619BF3A
grant_number: PCEGP3_181181
name: Improving estimation and prediction of common complex disease risk
publication: Cell Genomics
publication_identifier:
eissn:
- 2666-979X
publication_status: inpress
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Separating direct, indirect, and parent-of-origin genetic effects in the human
population
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21994'
abstract:
- lang: eng
text: Adaptive plant development is orchestrated, among others, by directional,
intercellular transport of the phytohormone auxin. Self-organizing development,
such as flexible vasculature formation, depends on so-called auxin canalization,
manifested by the gradual formation of auxin transport channels through feedback
between auxin signalling and transport. Herein, we identify MAKR6 as an important,
novel component in this feedback. MAKR6 expression accumulates strongly in vascular
cells and is tightly regulated by auxin via the Aux/IAA-ARF-WRKY23 transcriptional
network. MAKR6 is required for auxin canalization-dependent processes, including
leaf venation, vasculature regeneration, and de novo auxin channel formation from
local auxin sources. Mechanistically, MAKR6 interacts with the PIN1 auxin transporter,
modulating its trafficking and polarization. MAKR6 also associates with and integrates
two key receptor-like kinase complexes involved in canalization, TMK1/4 and the
CAMEL-CANAR. Together, our study establishes MAKR6 as a multifaceted regulator
that couples transcriptional auxin signalling to PIN1 repolarization and coordinates
multiple RLK-mediated signalling pathways during canalization. This provides mechanistic
insights into auxin canalization and exemplifies a framework for exploring similar
regulatory nodes in other developmental contexts.
acknowledgement: 'We would like to thank Dr. Yvon Jaillais (ENS, Lyon) for sharing
MAKR2 materials. This research was supported by the Scientific Service Units (SSU)
of ISTA through resources provided by the Imaging & Optics Facility (IOF) and the
Lab Support Facility (LSF). The research in the Friml group leading to these results
was funded by the European Research Council (ERC): 101142681 CYNIPS; and the Austrian
Science Fund (FWF): I 6123-B and P 37051-B. Ewa Mazur was supported by the National
Science Centre (NCN), Poland, under the OPUS call in the WEAVE programme: 2021/43/I/NZ1/01835.'
article_processing_charge: No
author:
- first_name: Zengxiang
full_name: Ge, Zengxiang
id: f43371a3-09ff-11eb-8013-bd0c6a2f6de8
last_name: Ge
orcid: 0000-0001-9381-3577
- first_name: Lilla
full_name: Koczka, Lilla
last_name: Koczka
- first_name: Ewa
full_name: Mazur, Ewa
last_name: Mazur
- first_name: Gergely
full_name: Molnar, Gergely
id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
last_name: Molnar
- first_name: Dmitrii
full_name: Vladimirtsev, Dmitrii
id: 60466724-5355-11ee-ae5a-fa55e8f99c3d
last_name: Vladimirtsev
- first_name: Nada
full_name: Kassem, Nada
last_name: Kassem
- first_name: Sara
full_name: Ait Ikene, Sara
id: 6a0bb896-6bad-11f1-9bef-906e9eb76034
last_name: Ait Ikene
- first_name: Lukas
full_name: Fiedler, Lukas
id: 7c417475-8972-11ed-ae7b-8b674ca26986
last_name: Fiedler
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Ge Z, Koczka L, Mazur E, et al. MAKR6 integrates TMK and CAMEL/CANAR signalling
for auxin canalization in Arabidopsis. bioRxiv. doi:10.1101/2025.10.07.680881
apa: Ge, Z., Koczka, L., Mazur, E., Molnar, G., Vladimirtsev, D., Kassem, N., …
Friml, J. (n.d.). MAKR6 integrates TMK and CAMEL/CANAR signalling for auxin canalization
in Arabidopsis. bioRxiv. https://doi.org/10.1101/2025.10.07.680881
chicago: Ge, Zengxiang, Lilla Koczka, Ewa Mazur, Gergely Molnar, Dmitrii Vladimirtsev,
Nada Kassem, Sara Ait Ikene, Lukas Fiedler, and Jiří Friml. “MAKR6 Integrates
TMK and CAMEL/CANAR Signalling for Auxin Canalization in Arabidopsis.” BioRxiv,
n.d. https://doi.org/10.1101/2025.10.07.680881.
ieee: Z. Ge et al., “MAKR6 integrates TMK and CAMEL/CANAR signalling for
auxin canalization in Arabidopsis,” bioRxiv. .
ista: Ge Z, Koczka L, Mazur E, Molnar G, Vladimirtsev D, Kassem N, Ait Ikene S,
Fiedler L, Friml J. MAKR6 integrates TMK and CAMEL/CANAR signalling for auxin
canalization in Arabidopsis. bioRxiv, 10.1101/2025.10.07.680881.
mla: Ge, Zengxiang, et al. “MAKR6 Integrates TMK and CAMEL/CANAR Signalling for
Auxin Canalization in Arabidopsis.” BioRxiv, doi:10.1101/2025.10.07.680881.
short: Z. Ge, L. Koczka, E. Mazur, G. Molnar, D. Vladimirtsev, N. Kassem, S. Ait
Ikene, L. Fiedler, J. Friml, BioRxiv (n.d.).
corr_author: '1'
date_created: 2026-06-13T16:57:07Z
date_published: 2026-05-30T00:00:00Z
date_updated: 2026-06-19T07:14:01Z
day: '30'
ddc:
- '580'
department:
- _id: GradSch
- _id: JiFr
doi: 10.1101/2025.10.07.680881
has_accepted_license: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
main_file_link:
- open_access: '1'
url: https://doi.org/10.1101/2025.10.07.680881
month: '05'
oa: 1
oa_version: Preprint
project:
- _id: 8f347782-16d5-11f0-9cad-8c19706ee739
grant_number: '101142681'
name: Cyclic nucleotides as second messengers in plants
- _id: bd76d395-d553-11ed-ba76-f678c14f9033
grant_number: I06123
name: Peptide receptors for auxin canalization in Arabidopsis
- _id: 7bcece63-9f16-11ee-852c-ae94e099eeb6
grant_number: P37051
name: Guanylate cyclase activity of TIR1/AFBs auxin receptors
publication: bioRxiv
publication_status: submitted
scopus_import: '1'
status: public
title: MAKR6 integrates TMK and CAMEL/CANAR signalling for auxin canalization in Arabidopsis
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21998'
abstract:
- lang: eng
text: Little Red Dots (LRDs), among the most enigmatic high-redshift discoveries
by JWST, are commonly believed to be powered by accreting supermassive black holes.
Here, we explore the possibility that these sources are globular clusters in formation,
with rest-frame UV arising from a very young stellar population and rest-frame
optical from a short-lived supermassive (>104 M⊙) star. The spectral profiles
of LRDs are broadly consistent with this scenario, though the observed temperatures
and bolometric luminosities favor emission reprocessed by optically thick continuum-driven
winds not fully captured by current models. The LRD z ∼ 5−7 UV luminosity function
naturally evolves, under standard evolutionary and mass-loss prescriptions, into
a present-day mass function with a turnover at log10(M*/M⊙) = 5.3 and an exponential
cutoff at high masses, consistent with local globular cluster populations. We
estimate the total present-day number density of LRDs formed across all redshifts
to be ≈0.3 Mpc−3, similar within uncertainties to local globular clusters. The
observed LRD redshift range matches the age distribution of metal-poor globular
clusters, without current LRD counterparts to the metal-rich population. If LRDs
are globular clusters in formation, we predict chemical abundance patterns characteristic
of multiple stellar populations, including enhanced He and N, and potential Na–O
and Al–Mg anticorrelations. These results offer a local perspective to explore
this surprisingly abundant population of distant sources, and a potential new
window into extreme stellar astrophysics in the early Universe.
acknowledgement: "We thank the referees for detailed and highly constructive reports
that significantly improved the scope and breadth of the manuscript. J.C. thanks
Hollis Akins, Volker Bromm, Rui Chaves-Marques, Steve Finkelstein, Karl Gebhardt,
Keith Hawkins, Harley Katz, Stellar Offner, Daniel Schaerer, Grace Telford, and
Jorick Vink for conversations that improved the Letter. A.d.G. acknowledges support
from a Clay Fellowship awarded by the Smithsonian Astrophysical Observatory. M.B.K.
acknowledges support from NSF grants AST-2108962 and AST-2408247; NASA grant 80NSSC22K0827;
HST-GO-16686, HST-AR-17028, JWST-GO-03788, and JWST-AR-06278 from the Space Telescope
Science Institute, which is operated by AURA, Inc., under NASA contract NAS5-26555;
and from the Samuel T. and Fern Yanagisawa Regents Professorship in Astronomy at
UT Austin. A.A.C.S. acknowledges support by the Deutsche Forschungsgemeinschaft
(DFG, German Research Foundation) in the form of an Emmy Noether Research Group—Project-ID
445674056 (SA4064/1-1, PI Sander). A.A.C.S. further acknowledges support from the
Deutsches Zentrum für Luft und Raumfahrt (DLR) grant grants 50 OR 2509 (PI: A.A.C.
Sander) and 50 OR 2306 (PI: V. Ramachandran/A.A.C. Sander) as well as from the Federal
Ministry of Research, Technology, and Space (BMFTR) and the Baden-Württemberg Ministry
of Science as part of the Excellence Strategy of the German Federal and State Governments.
This project was cofunded by the European Union (Project 101183150—OCEANS).\r\n\r\nThis
work is based in part on observations made with the NASA/ESA/CSA James Webb Space
Telescope. The data were obtained from the Mikulski Archive for Space Telescopes
at the Space Telescope Science Institute, which is operated by the Association of
Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for
JWST. These observations are associated with programs 1180, 1181, 1208, 1212, 1213,
1215, 1286, 1345, 1433, 2198, 2561, 2750, 2767, 4106, 4233, 5105, 5224, 6368, and
6585."
article_number: L4
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: John
full_name: Chisholm, John
last_name: Chisholm
- first_name: Danielle A.
full_name: Berg, Danielle A.
last_name: Berg
- first_name: Michael
full_name: Boylan-Kolchin, Michael
last_name: Boylan-Kolchin
- first_name: Anna
full_name: De Graaff, Anna
last_name: De Graaff
- first_name: Lukas J.
full_name: Furtak, Lukas J.
last_name: Furtak
- first_name: Vasily
full_name: Kokorev, Vasily
last_name: Kokorev
- first_name: Jorryt J
full_name: Matthee, Jorryt J
id: 7439a258-f3c0-11ec-9501-9df22fe06720
last_name: Matthee
orcid: 0000-0003-2871-127X
- first_name: Julian B.
full_name: Muñoz, Julian B.
last_name: Muñoz
- first_name: Rohan P.
full_name: Naidu, Rohan P.
last_name: Naidu
- first_name: Andreas A.C.
full_name: Sander, Andreas A.C.
last_name: Sander
citation:
ama: Chisholm J, Berg DA, Boylan-Kolchin M, et al. Little Red Dots as globular clusters
in formation. The Astrophysical Journal Letters. 2026;1004(1). doi:10.3847/2041-8213/ae6dae
apa: Chisholm, J., Berg, D. A., Boylan-Kolchin, M., De Graaff, A., Furtak, L. J.,
Kokorev, V., … Sander, A. A. C. (2026). Little Red Dots as globular clusters in
formation. The Astrophysical Journal Letters. IOP Publishing. https://doi.org/10.3847/2041-8213/ae6dae
chicago: Chisholm, John, Danielle A. Berg, Michael Boylan-Kolchin, Anna De Graaff,
Lukas J. Furtak, Vasily Kokorev, Jorryt J Matthee, Julian B. Muñoz, Rohan P. Naidu,
and Andreas A.C. Sander. “Little Red Dots as Globular Clusters in Formation.”
The Astrophysical Journal Letters. IOP Publishing, 2026. https://doi.org/10.3847/2041-8213/ae6dae.
ieee: J. Chisholm et al., “Little Red Dots as globular clusters in formation,”
The Astrophysical Journal Letters, vol. 1004, no. 1. IOP Publishing, 2026.
ista: Chisholm J, Berg DA, Boylan-Kolchin M, De Graaff A, Furtak LJ, Kokorev V,
Matthee JJ, Muñoz JB, Naidu RP, Sander AAC. 2026. Little Red Dots as globular
clusters in formation. The Astrophysical Journal Letters. 1004(1), L4.
mla: Chisholm, John, et al. “Little Red Dots as Globular Clusters in Formation.”
The Astrophysical Journal Letters, vol. 1004, no. 1, L4, IOP Publishing,
2026, doi:10.3847/2041-8213/ae6dae.
short: J. Chisholm, D.A. Berg, M. Boylan-Kolchin, A. De Graaff, L.J. Furtak, V.
Kokorev, J.J. Matthee, J.B. Muñoz, R.P. Naidu, A.A.C. Sander, The Astrophysical
Journal Letters 1004 (2026).
date_created: 2026-06-14T22:01:42Z
date_published: 2026-06-10T00:00:00Z
date_updated: 2026-06-19T09:50:33Z
day: '10'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.3847/2041-8213/ae6dae
external_id:
arxiv:
- '2602.15935'
file:
- access_level: open_access
checksum: 66949af6e620c8ef37de42688829a3e3
content_type: application/pdf
creator: dernst
date_created: 2026-06-19T09:45:21Z
date_updated: 2026-06-19T09:45:21Z
file_id: '22098'
file_name: 2026_AstrophysicalJourLetters_Chisholm.pdf
file_size: 919919
relation: main_file
success: 1
file_date_updated: 2026-06-19T09:45:21Z
has_accepted_license: '1'
intvolume: ' 1004'
issue: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal Letters
publication_identifier:
eissn:
- 2041-8213
issn:
- 2041-8205
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Little Red Dots as globular clusters in formation
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1004
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21997'
abstract:
- lang: eng
text: 'The massive binary common envelope (CE) phase plays a pivotal role in the
formation of close black hole (BH)/neutron star binaries, yet significant uncertainties
remain in our understanding of this process. In this study, we aim to constrain
the massive binary CE phase by systematically reconstructing three observed BH
X-ray binaries (BHXBs): GRO J1655-40, SAX J1819.3-2525, and 4U 1543-47. Through
comprehensive binary evolution simulations and parametric supernova modeling,
we establish lower limits for the CE efficiency parameters under different energy
considerations within the standard energy formalism. Specifically, we derive minimum
values for three cases: α0.5U and αU, representing CE efficiencies with half and
all of the internal energy contributing to the envelope ejection, respectively,
and αH, accounting for the envelope’s enthalpy. Our analysis reveals that the
self-consistent formation of these three BHXBs requires CE efficiency parameters
satisfying α0.5U ≳ 6.7, αU ≳ 4.2, and αH ≳ 1.7. Notably, we find no viable solutions
with CE efficiency values below unity, even when considering the most extreme
scenarios, in which the envelope binding energy is significantly reduced through
enthalpy inclusion. Our results strongly imply that either additional energy sources
are required or the formalism itself must be revised. Furthermore, we quantitatively
assess the impact of BH natal kicks on our results. A key finding is that 4U 1543-47’s
formation requires substantial natal kicks (≳50 km s−1), as lower kick velocities
are incompatible with isolated binary evolution.'
acknowledgement: We deeply thank the referee for a very careful reading and constructive
comments that have led to the improvement of the manuscript. The authors are grateful
to Poshak Gandhi for his valuable suggestions and feedback on this work. This work
is supported by the Natural Science Foundation of China (grant Nos. 12125303, 12525304,
12288102, 12473034, 12103028, 12333008, 12422305, 12090040/3, 12273105, 11703081,
11422324, 12073070, and 12173081), the CAS Project for Young Scientists in Basic
Research (YSBR-148), the Strategic Priority Research Program of the Chinese Academy
of Sciences (grant Nos. XDB1160303, XDB1160201, and XDB1160000), the National Key
R&D Program of China (grant Nos. 2021YFA1600403 and 2021YFA1600400), the Key Research
Program of Frontier Sciences of CAS (No. ZDBS-LY-7005), the “CAS Light of West China”,
the Yunnan Revitalization Talent Support Program-Science & Technology Champion Project
(No. 202305AB350003) and Young Talent Project, the International Centre of Supernovae
(ICESUN), Yunnan Key Laboratory of Supernova Research (Nos. 202302AN360001 and 202201BC070003),
Yunnan Fundamental Research Projects (No. 202401AT070139), and the Natural Science
Foundation of Henan Province (No. 242300420944). X.C. acknowledges the New Cornerstone
Science Foundation through the XPLORER PRIZE. The authors gratefully acknowledge
the “PHOENIX Supercomputing Platform” jointly operated by the Binary Population
Synthesis Group and the Stellar Astrophysics Group at Yunnan Observatories, Chinese
Academy of Sciences.
article_number: '31'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Zhenwei
full_name: Li, Zhenwei
last_name: Li
- first_name: Dandan
full_name: Wei, Dandan
id: 5dd129bd-0601-11ef-b325-833284687b76
last_name: Wei
- first_name: Shi
full_name: Jia, Shi
last_name: Jia
- first_name: Hailiang
full_name: Chen, Hailiang
last_name: Chen
- first_name: Hongwei
full_name: Ge, Hongwei
last_name: Ge
- first_name: Zhuo
full_name: Chen, Zhuo
last_name: Chen
- first_name: Yangyang
full_name: Zhang, Yangyang
last_name: Zhang
- first_name: Xuefei
full_name: Chen, Xuefei
last_name: Chen
- first_name: Zhanwen
full_name: Han, Zhanwen
last_name: Han
citation:
ama: 'Li Z, Wei D, Jia S, et al. A path to constraints on common envelope ejection
in massive binaries: Full evolutionary reconstruction of three Black Hole X-ray
binaries. The Astrophysical Journal. 2026;1004(1). doi:10.3847/1538-4357/ae66fd'
apa: 'Li, Z., Wei, D., Jia, S., Chen, H., Ge, H., Chen, Z., … Han, Z. (2026). A
path to constraints on common envelope ejection in massive binaries: Full evolutionary
reconstruction of three Black Hole X-ray binaries. The Astrophysical Journal.
IOP Publishing. https://doi.org/10.3847/1538-4357/ae66fd'
chicago: 'Li, Zhenwei, Dandan Wei, Shi Jia, Hailiang Chen, Hongwei Ge, Zhuo Chen,
Yangyang Zhang, Xuefei Chen, and Zhanwen Han. “A Path to Constraints on Common
Envelope Ejection in Massive Binaries: Full Evolutionary Reconstruction of Three
Black Hole X-Ray Binaries.” The Astrophysical Journal. IOP Publishing,
2026. https://doi.org/10.3847/1538-4357/ae66fd.'
ieee: 'Z. Li et al., “A path to constraints on common envelope ejection in
massive binaries: Full evolutionary reconstruction of three Black Hole X-ray binaries,”
The Astrophysical Journal, vol. 1004, no. 1. IOP Publishing, 2026.'
ista: 'Li Z, Wei D, Jia S, Chen H, Ge H, Chen Z, Zhang Y, Chen X, Han Z. 2026. A
path to constraints on common envelope ejection in massive binaries: Full evolutionary
reconstruction of three Black Hole X-ray binaries. The Astrophysical Journal.
1004(1), 31.'
mla: 'Li, Zhenwei, et al. “A Path to Constraints on Common Envelope Ejection in
Massive Binaries: Full Evolutionary Reconstruction of Three Black Hole X-Ray Binaries.”
The Astrophysical Journal, vol. 1004, no. 1, 31, IOP Publishing, 2026,
doi:10.3847/1538-4357/ae66fd.'
short: Z. Li, D. Wei, S. Jia, H. Chen, H. Ge, Z. Chen, Y. Zhang, X. Chen, Z. Han,
The Astrophysical Journal 1004 (2026).
date_created: 2026-06-14T22:01:42Z
date_published: 2026-06-10T00:00:00Z
date_updated: 2026-06-19T09:58:52Z
day: '10'
ddc:
- '520'
department:
- _id: YlGo
doi: 10.3847/1538-4357/ae66fd
external_id:
arxiv:
- '2604.10440'
file:
- access_level: open_access
checksum: bb76fbb51f8d2834cb79f19e7932e3bd
content_type: application/pdf
creator: dernst
date_created: 2026-06-19T09:56:29Z
date_updated: 2026-06-19T09:56:29Z
file_id: '22099'
file_name: 2026_AstrophysicalJour_Li.pdf
file_size: 3386217
relation: main_file
success: 1
file_date_updated: 2026-06-19T09:56:29Z
has_accepted_license: '1'
intvolume: ' 1004'
issue: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
eissn:
- 1538-4357
issn:
- 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'A path to constraints on common envelope ejection in massive binaries: Full
evolutionary reconstruction of three Black Hole X-ray binaries'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1004
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '14278'
abstract:
- lang: eng
text: 'The Birkhoff conjecture says that the boundary of a strictly convex integrable
billiard table is necessarily an ellipse. In this article, we consider a stronger
notion of integrability, namely, integrability close to the boundary, and prove
a local version of this conjecture: a small perturbation of almost every ellipse
that preserves integrability near the boundary, is itself an ellipse. We apply
this result to study local spectral uniqueness of ellipses using the connection
between the wave trace of the Laplacian and the dynamics near the boundary and
establish local uniqueness for almost all of them.'
acknowledgement: 'The author acknowledges the partial support of the European Research
Council Grant #885707. He also thanks Vadim Kaloshin for proposing the idea of the
project and greatly aiding the implementation. The author is also grateful to Hamid
Hezari, Amir Vig, Steve Zelditch, Comlan E. Koudjinan, Corentin Fierobe, Ngo Nhok
Tkhai Shon and Roman Sarapin for useful discussions. The author also acknowledges
partial support of ISTern summer program. The project started in the summer of 2021,
when the author was an intern at ISTA. Open access funding provided by Institute
of Science and Technology (IST Austria).'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Illya
full_name: Koval, Illya
id: 2eed1f3b-896a-11ed-bdf8-93c7c4bf159e
last_name: Koval
citation:
ama: Koval I. Local strong Birkhoff conjecture and local spectral rigidity of almost
every ellipse. Inventiones Mathematicae. 2025. doi:10.1007/s00222-025-01397-y
apa: Koval, I. (2025). Local strong Birkhoff conjecture and local spectral rigidity
of almost every ellipse. Inventiones Mathematicae. Springer Nature. https://doi.org/10.1007/s00222-025-01397-y
chicago: Koval, Illya. “Local Strong Birkhoff Conjecture and Local Spectral Rigidity
of Almost Every Ellipse.” Inventiones Mathematicae. Springer Nature, 2025.
https://doi.org/10.1007/s00222-025-01397-y.
ieee: I. Koval, “Local strong Birkhoff conjecture and local spectral rigidity of
almost every ellipse,” Inventiones Mathematicae. Springer Nature, 2025.
ista: Koval I. 2025. Local strong Birkhoff conjecture and local spectral rigidity
of almost every ellipse. Inventiones Mathematicae.
mla: Koval, Illya. “Local Strong Birkhoff Conjecture and Local Spectral Rigidity
of Almost Every Ellipse.” Inventiones Mathematicae, Springer Nature, 2025,
doi:10.1007/s00222-025-01397-y.
short: I. Koval, Inventiones Mathematicae (2025).
corr_author: '1'
date_created: 2023-09-06T08:35:43Z
date_published: 2025-12-11T00:00:00Z
date_updated: 2025-12-29T11:37:48Z
day: '11'
ddc:
- '510'
department:
- _id: GradSch
- _id: VaKa
doi: 10.1007/s00222-025-01397-y
ec_funded: 1
external_id:
arxiv:
- '2111.12171'
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1007/s00222-025-01397-y
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 9B8B92DE-BA93-11EA-9121-9846C619BF3A
call_identifier: H2020
grant_number: '885707'
name: Spectral rigidity and integrability for billiards and geodesic flows
publication: Inventiones Mathematicae
publication_identifier:
eissn:
- 1432-1297
issn:
- 0020-9910
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Local strong Birkhoff conjecture and local spectral rigidity of almost every
ellipse
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: gold
_id: '14647'
abstract:
- lang: eng
text: "In the developing vertebrate central nervous system, neurons and glia typically
arise\r\nsequentially from common progenitors. Here, we report that the transcription
factor Forkhead\r\nBox G1 (Foxg1) regulates gliogenesis in the mouse neocortex
via distinct cell-autonomous roles in progenitors and postmitotic neurons that
regulate different aspects of the gliogenic FGF signalling pathway. We demonstrate
that loss of Foxg1 in cortical progenitors at neurogenic stages causes premature
astrogliogenesis. We identify a novel FOXG1 target, the pro-gliogenic FGF pathway
component Fgfr3, which is suppressed by FOXG1 cell-autonomously to maintain neurogenesis.
Furthermore, FOXG1 can also suppress premature astrogliogenesis triggered by the
augmentation of FGF signalling. We identify a second novel function of FOXG1 in
regulating the expression of gliogenic cues in newborn neocortical upper-layer
neurons. Loss of FOXG1 in postmitotic neurons non-autonomously enhances gliogenesis
in the progenitors via FGF signalling. These results fit well with the model that
newborn neurons secrete cues that trigger progenitors to produce the next wave
of cell types, astrocytes. If FGF signalling is attenuated in Foxg1 null progenitors,
they progress to oligodendrocyte production. Therefore, loss of FOXG1 transitions
the progenitor to a gliogenic state, producing either astrocytes or oligodendrocytes
depending on FGF signalling levels. Our results uncover how FOXG1 integrates extrinsic
signalling via the FGF pathway to regulate the sequential generation of neurons,
astrocytes, and oligodendrocytes in the cerebral cortex. "
acknowledgement: "We thank the animal house staff of the Tata Institute of Fundamental
Research, Mumbai (TIFR), for their excellent support; Gordon Fishell (Harvard Medical
School, USA), and Goichi Miyoshi (Gunma University, Japan) for the Foxg1 floxed
mouse line; Hiroshi Kawasaki (Kanazawa University, Japan) for the plasmids pCAG-FGF8
and pCAG-sFgfr3c; Soo Kyung Lee (University at Buffalo, The State University of
New York, USA) for the Foxg1lox/lox genotyping primers and protocol. We thank Deepak
Modi and Vainav Patel (National Institute for Research in Reproductive and Child
Health, NIRRCH, Mumbai, India) for the use of the NIRRCH FACS Facility, and the
staff of the NIRRCH and TIFR FACS facilities for their assistance. We thank Denis
Jabaudon (University of Geneva, Switzerland) for his critical comments on the manuscript
and members of the Jabaudon lab for helpful discussions. This work was funded by
the Department of Atomic Energy (DAE), Govt. of India (Project Identification no.
RTI4003,\r\nDAE OM no. 1303/2/2019/R&D-II/DAE/2079). "
article_number: '101851'
article_processing_charge: Yes
article_type: original
author:
- first_name: Mahima
full_name: Bose, Mahima
last_name: Bose
- first_name: Varun
full_name: Suresh, Varun
last_name: Suresh
- first_name: Urvi
full_name: Mishra, Urvi
last_name: Mishra
- first_name: Ishita
full_name: Talwar, Ishita
last_name: Talwar
- first_name: Anuradha
full_name: Yadav, Anuradha
last_name: Yadav
- first_name: Shiona
full_name: Biswas, Shiona
last_name: Biswas
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: Shubha
full_name: Tole, Shubha
last_name: Tole
citation:
ama: Bose M, Suresh V, Mishra U, et al. Dual role of FOXG1 in regulating gliogenesis
in the developing neocortex via the FGF signalling pathway. eLife. 2025;13.
doi:10.7554/elife.101851.3
apa: Bose, M., Suresh, V., Mishra, U., Talwar, I., Yadav, A., Biswas, S., … Tole,
S. (2025). Dual role of FOXG1 in regulating gliogenesis in the developing neocortex
via the FGF signalling pathway. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.101851.3
chicago: Bose, Mahima, Varun Suresh, Urvi Mishra, Ishita Talwar, Anuradha Yadav,
Shiona Biswas, Simon Hippenmeyer, and Shubha Tole. “Dual Role of FOXG1 in Regulating
Gliogenesis in the Developing Neocortex via the FGF Signalling Pathway.” ELife.
eLife Sciences Publications, 2025. https://doi.org/10.7554/elife.101851.3.
ieee: M. Bose et al., “Dual role of FOXG1 in regulating gliogenesis in the
developing neocortex via the FGF signalling pathway,” eLife, vol. 13. eLife
Sciences Publications, 2025.
ista: Bose M, Suresh V, Mishra U, Talwar I, Yadav A, Biswas S, Hippenmeyer S, Tole
S. 2025. Dual role of FOXG1 in regulating gliogenesis in the developing neocortex
via the FGF signalling pathway. eLife. 13, 101851.
mla: Bose, Mahima, et al. “Dual Role of FOXG1 in Regulating Gliogenesis in the Developing
Neocortex via the FGF Signalling Pathway.” ELife, vol. 13, 101851, eLife
Sciences Publications, 2025, doi:10.7554/elife.101851.3.
short: M. Bose, V. Suresh, U. Mishra, I. Talwar, A. Yadav, S. Biswas, S. Hippenmeyer,
S. Tole, ELife 13 (2025).
date_created: 2023-12-06T13:07:01Z
date_published: 2025-03-14T00:00:00Z
date_updated: 2025-05-14T11:41:52Z
day: '14'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.7554/elife.101851.3
external_id:
pmid:
- '40085500'
file:
- access_level: open_access
checksum: 64a6a6f86e24b21fe72c7a7fd6056fed
content_type: application/pdf
creator: dernst
date_created: 2025-04-03T11:19:26Z
date_updated: 2025-04-03T11:19:26Z
file_id: '19467'
file_name: 2025_eLife_Bose.pdf
file_size: 17462771
relation: main_file
success: 1
file_date_updated: 2025-04-03T11:19:26Z
has_accepted_license: '1'
intvolume: ' 13'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
eissn:
- 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via
the FGF signalling pathway
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '18074'
abstract:
- lang: eng
text: The Aharonov–Casher theorem is a result on the number of the so-called zero
modes of a system described by the magnetic Pauli operator in R2. In this paper
we address the same question for the Dirac operator on a flat two-dimensional
manifold with boundary and Atiyah–Patodi–Singer boundary condition. More concretely
we are interested in the plane and a disc with a finite number of circular holes
cut out. We consider a smooth compactly supported magnetic field on the manifold
and an arbitrary magnetic field inside the holes.
acknowledgement: "First and foremost I am grateful to Jan Philip Solovej for fruitful
meetings during (and after) my PhD programme, when this work was done. Further I
would like to thank Joshua Hunt, Anna Sisak, Jakub Löwit, Błażej Ruba, Volodymir
Riabov, Lukas Schimmer and Georgios Koutentakis for valuable discussions. Many thanks
belong to Rafael Benguria for hosting my visit, during which some of the work has
been done. I am also grateful to Marina Prokhorova who first initiated the discussion
of this project topic and to Annemarie Luger for her valuable comments during my
PhD defence and in particular pointing out the qualitative difference in our two
main results. I would like to acknowledge support for research on this paper from
VILLUM FONDEN through the QMATH Centre of Excellence grant. nr. 10059. This project
also received funding from the European Union’s Horizon 2020 research and innovation
programme under the Marie Skłodowska-Curie grant agreement No 101034413. I am grateful
to the two reviewers for reading carefully my manuscript and pointing out several
issues contributing thus significantly to the readability and clarity of this paper.\r\nOpen
access funding provided by Institute of Science and Technology (IST Austria)."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Marie
full_name: Fialova, Marie
id: e9c9844d-9e21-11ec-b482-f96fc09f7c4d
last_name: Fialova
citation:
ama: Fialova M. Aharonov–Casher theorems for Dirac operators on manifolds with boundary
and APS boundary condition. Annales Henri Poincare. 2025;26:2859-2900.
doi:10.1007/s00023-024-01482-7
apa: Fialova, M. (2025). Aharonov–Casher theorems for Dirac operators on manifolds
with boundary and APS boundary condition. Annales Henri Poincare. Springer
Nature. https://doi.org/10.1007/s00023-024-01482-7
chicago: Fialova, Marie. “Aharonov–Casher Theorems for Dirac Operators on Manifolds
with Boundary and APS Boundary Condition.” Annales Henri Poincare. Springer
Nature, 2025. https://doi.org/10.1007/s00023-024-01482-7.
ieee: M. Fialova, “Aharonov–Casher theorems for Dirac operators on manifolds with
boundary and APS boundary condition,” Annales Henri Poincare, vol. 26.
Springer Nature, pp. 2859–2900, 2025.
ista: Fialova M. 2025. Aharonov–Casher theorems for Dirac operators on manifolds
with boundary and APS boundary condition. Annales Henri Poincare. 26, 2859–2900.
mla: Fialova, Marie. “Aharonov–Casher Theorems for Dirac Operators on Manifolds
with Boundary and APS Boundary Condition.” Annales Henri Poincare, vol.
26, Springer Nature, 2025, pp. 2859–900, doi:10.1007/s00023-024-01482-7.
short: M. Fialova, Annales Henri Poincare 26 (2025) 2859–2900.
corr_author: '1'
date_created: 2024-09-15T22:01:42Z
date_published: 2025-08-01T00:00:00Z
date_updated: 2025-09-30T10:22:14Z
day: '01'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00023-024-01482-7
ec_funded: 1
external_id:
arxiv:
- '2304.13373'
isi:
- '001304370000001'
file:
- access_level: open_access
checksum: d8d2d6dbce293c9ee6eaa9262e597147
content_type: application/pdf
creator: dernst
date_created: 2025-08-05T11:24:25Z
date_updated: 2025-08-05T11:24:25Z
file_id: '20124'
file_name: 2025_AnnalesHenriPoincare_Fialova.pdf
file_size: 728124
relation: main_file
success: 1
file_date_updated: 2025-08-05T11:24:25Z
has_accepted_license: '1'
intvolume: ' 26'
isi: 1
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 2859-2900
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Annales Henri Poincare
publication_identifier:
issn:
- 1424-0637
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Aharonov–Casher theorems for Dirac operators on manifolds with boundary and
APS boundary condition
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 26
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18154'
abstract:
- lang: eng
text: 'In 1976, Deligne and Lusztig realized the representation theory of finite
groups of Lie type inside étale cohomology of certain algebraic varieties. Recently,
a p-adic version of this theory started to emerge: there are p-adic Deligne–Lusztig
spaces, whose cohomology encodes representation theoretic information for p-adic
groups – for instance, it partially realizes the local Langlands correspondence
with characteristic zero coefficients. However, the parallel case of coefficients
of positive characteristic ℓ≠p has not been inspected so far. The purpose of
this article is to initiate such an inspection. In particular, we relate cohomology
of certain p-adic Deligne–Lusztig spaces to Vignéras''s modular local Langlands
correspondence for GLn.'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Jakub
full_name: Löwit, Jakub
id: e3b80ae2-eb8e-11eb-b029-9aef4a9108a0
last_name: Löwit
citation:
ama: Löwit J. On modulo ℓ cohomology of p-adic Deligne–Lusztig varieties for GLn.
Journal of Algebra. 2025;663(2):81-118. doi:10.1016/j.jalgebra.2024.08.033
apa: Löwit, J. (2025). On modulo ℓ cohomology of p-adic Deligne–Lusztig varieties
for GLn. Journal of Algebra. Elsevier. https://doi.org/10.1016/j.jalgebra.2024.08.033
chicago: Löwit, Jakub. “On modulo ℓ Cohomology of P-Adic Deligne–Lusztig Varieties
for GLn.” Journal of Algebra. Elsevier, 2025. https://doi.org/10.1016/j.jalgebra.2024.08.033.
ieee: J. Löwit, “On modulo ℓ cohomology of p-adic Deligne–Lusztig varieties for
GLn,” Journal of Algebra, vol. 663, no. 2. Elsevier, pp. 81–118, 2025.
ista: Löwit J. 2025. On modulo ℓ cohomology of p-adic Deligne–Lusztig varieties
for GLn. Journal of Algebra. 663(2), 81–118.
mla: Löwit, Jakub. “On modulo ℓ Cohomology of P-Adic Deligne–Lusztig Varieties for
GLn.” Journal of Algebra, vol. 663, no. 2, Elsevier, 2025, pp. 81–118,
doi:10.1016/j.jalgebra.2024.08.033.
short: J. Löwit, Journal of Algebra 663 (2025) 81–118.
corr_author: '1'
date_created: 2024-09-29T22:01:37Z
date_published: 2025-02-01T00:00:00Z
date_updated: 2025-02-27T12:32:40Z
day: '01'
ddc:
- '510'
department:
- _id: TaHa
doi: 10.1016/j.jalgebra.2024.08.033
external_id:
arxiv:
- '2404.11176'
isi:
- '001325207800001'
file:
- access_level: open_access
checksum: eb240e93c178e48429ad918c9058f1fe
content_type: application/pdf
creator: dernst
date_created: 2025-01-13T08:57:57Z
date_updated: 2025-01-13T08:57:57Z
file_id: '18830'
file_name: 2024_JourAlgebra_Loewit.pdf
file_size: 731175
relation: main_file
success: 1
file_date_updated: 2025-01-13T08:57:57Z
has_accepted_license: '1'
intvolume: ' 663'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 81-118
publication: Journal of Algebra
publication_identifier:
eissn:
- 1090-266X
issn:
- 0021-8693
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: On modulo ℓ cohomology of p-adic Deligne–Lusztig varieties for GLn
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 663
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18157'
abstract:
- lang: eng
text: "Interest in sliding block puzzles dates back to the 15-puzzle, seemingly
invented by Noyes Chapman in 1874 (see [23] for an account of the fascinating
history of the puzzle). The game consists of fifteen movable square blocks numbered
\r\n and arranged within a \r\n square box, leaving one empty space (see Figure
1). The task at hand is to start from a given configuration of the numbered blocks
and reach the desired target configuration, where the only allowed move is to
slide a numbered block into an adjacent empty space. This task seemed to be unpredictably
either very easy to accomplish, or completely impossible, and the puzzle turned
into a worldwide sensation in the spring of 1880. A particularly challenging instance,
known as the 13-15-14 puzzle, consisted of initial and target configurations that
differed by a single swap (historically this swap involved the blocks labeled
14 and 15). The craze of this puzzle was such that it consistently made newspaper
headlines in 1880, with an article in the New York Times lamenting that it was
“threatening our free institutions” [23, p. 9]. Various prizes were offered for
anyone who could solve this challenge, beginning with a $25 set of teeth and culminating
with Sam Loyd’s famous $1,000 cash prize."
acknowledgement: Open access funding provided by Copenhagen University.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Florestan R
full_name: Brunck, Florestan R
id: 6ab6e556-f394-11eb-9cf6-9dfb78f00d8d
last_name: Brunck
- first_name: Matthew Alan
full_name: Kwan, Matthew Alan
id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
last_name: Kwan
orcid: 0000-0002-4003-7567
citation:
ama: 'Brunck FR, Kwan MA. Books, Hallways, and social butterflies: A note on sliding
block puzzles. Mathematical Intelligencer. 2025;47:52-65. doi:10.1007/s00283-024-10358-x'
apa: 'Brunck, F. R., & Kwan, M. A. (2025). Books, Hallways, and social butterflies:
A note on sliding block puzzles. Mathematical Intelligencer. Springer Nature.
https://doi.org/10.1007/s00283-024-10358-x'
chicago: 'Brunck, Florestan R, and Matthew Alan Kwan. “Books, Hallways, and Social
Butterflies: A Note on Sliding Block Puzzles.” Mathematical Intelligencer.
Springer Nature, 2025. https://doi.org/10.1007/s00283-024-10358-x.'
ieee: 'F. R. Brunck and M. A. Kwan, “Books, Hallways, and social butterflies: A
note on sliding block puzzles,” Mathematical Intelligencer, vol. 47. Springer
Nature, pp. 52–65, 2025.'
ista: 'Brunck FR, Kwan MA. 2025. Books, Hallways, and social butterflies: A note
on sliding block puzzles. Mathematical Intelligencer. 47, 52–65.'
mla: 'Brunck, Florestan R., and Matthew Alan Kwan. “Books, Hallways, and Social
Butterflies: A Note on Sliding Block Puzzles.” Mathematical Intelligencer,
vol. 47, Springer Nature, 2025, pp. 52–65, doi:10.1007/s00283-024-10358-x.'
short: F.R. Brunck, M.A. Kwan, Mathematical Intelligencer 47 (2025) 52–65.
date_created: 2024-09-29T22:01:38Z
date_published: 2025-03-01T00:00:00Z
date_updated: 2025-05-19T14:00:09Z
day: '01'
ddc:
- '510'
department:
- _id: UlWa
- _id: MaKw
doi: 10.1007/s00283-024-10358-x
external_id:
arxiv:
- '2303.09459'
isi:
- '001318056000001'
file:
- access_level: open_access
checksum: c932ebe45c460d4a73f5b2dcca643db1
content_type: application/pdf
creator: dernst
date_created: 2025-04-08T11:17:45Z
date_updated: 2025-04-08T11:17:45Z
file_id: '19530'
file_name: 2025_MathIntelligencer_Brunck.pdf
file_size: 1760643
relation: main_file
success: 1
file_date_updated: 2025-04-08T11:17:45Z
has_accepted_license: '1'
intvolume: ' 47'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 52-65
publication: Mathematical Intelligencer
publication_identifier:
issn:
- 0343-6993
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Books, Hallways, and social butterflies: A note on sliding block puzzles'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 47
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18169'
abstract:
- lang: eng
text: "As the complexity and criticality of software increase every year, so does
the importance of runtime monitoring. Third-party and best-effort monitoring are
especially valuable, yet under-explored areas of runtime monitoring. In this context,
third-party monitoring means monitoring with a limited knowledge of the monitored
software (as it has been developed by a third party). Best-effort monitoring keeps
pace with the monitored software at the cost of possibly imprecise verdicts when
keeping up with the monitored software would not be feasible. Most existing monitoring
frameworks do not support the combination of third-party and best-effort monitoring
because they either require the full access to the monitored code or the ability
to process all observable events, or both.\r\nWe present a middleware framework,
Vamos, for the runtime monitoring of software. Vamos is explicitly designed to
support third-party and best-effort scenarios. The design goals of Vamos are (i)
efficiency (tracing events with low overhead), (ii) flexibility (the ability to
monitor a variety of different event channels, and to connect to a wide range
of monitors), and (iii) ease-of-use. To achieve its goals, Vamos combines aspects
of event broker and event recognition systems with aspects of stream processing
systems.\r\nWe implemented a prototype toolchain for Vamos and conducted a set
of experiments demonstrating the usability of the scheme. The results indicate
that Vamos enables writing useful yet efficient monitors, and simplifies key aspects
of setting up a monitoring system from scratch."
acknowledgement: This work was supported in part by the ERC-2020-AdG 101020093. The
authors would like to thank the STTT reviewers for their valuable feedback and suggestions.
article_number: '103212'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Marek
full_name: Chalupa, Marek
id: 87e34708-d6c6-11ec-9f5b-9391e7be2463
last_name: Chalupa
- first_name: Fabian
full_name: Mühlböck, Fabian
id: 6395C5F6-89DF-11E9-9C97-6BDFE5697425
last_name: Mühlböck
orcid: 0000-0003-1548-0177
- first_name: Stefanie
full_name: Muroya Lei, Stefanie
id: a376de31-8972-11ed-ae7b-d0251c13c8ff
last_name: Muroya Lei
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
citation:
ama: 'Chalupa M, Mühlböck F, Muroya Lei S, Henzinger TA. VAMOS: Middleware for best-effort
third-party monitoring. Science of Computer Programming. 2025;240(2). doi:10.1016/j.scico.2024.103212'
apa: 'Chalupa, M., Mühlböck, F., Muroya Lei, S., & Henzinger, T. A. (2025).
VAMOS: Middleware for best-effort third-party monitoring. Science of Computer
Programming. Elsevier. https://doi.org/10.1016/j.scico.2024.103212'
chicago: 'Chalupa, Marek, Fabian Mühlböck, Stefanie Muroya Lei, and Thomas A Henzinger.
“VAMOS: Middleware for Best-Effort Third-Party Monitoring.” Science of Computer
Programming. Elsevier, 2025. https://doi.org/10.1016/j.scico.2024.103212.'
ieee: 'M. Chalupa, F. Mühlböck, S. Muroya Lei, and T. A. Henzinger, “VAMOS: Middleware
for best-effort third-party monitoring,” Science of Computer Programming,
vol. 240, no. 2. Elsevier, 2025.'
ista: 'Chalupa M, Mühlböck F, Muroya Lei S, Henzinger TA. 2025. VAMOS: Middleware
for best-effort third-party monitoring. Science of Computer Programming. 240(2),
103212.'
mla: 'Chalupa, Marek, et al. “VAMOS: Middleware for Best-Effort Third-Party Monitoring.”
Science of Computer Programming, vol. 240, no. 2, 103212, Elsevier, 2025,
doi:10.1016/j.scico.2024.103212.'
short: M. Chalupa, F. Mühlböck, S. Muroya Lei, T.A. Henzinger, Science of Computer
Programming 240 (2025).
corr_author: '1'
date_created: 2024-10-06T22:01:10Z
date_published: 2025-02-01T00:00:00Z
date_updated: 2025-09-09T12:25:29Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1016/j.scico.2024.103212
ec_funded: 1
external_id:
isi:
- '001327852600001'
file:
- access_level: open_access
checksum: cd93c0c356e479ffccfbe8499b6ba8e2
content_type: application/pdf
creator: dernst
date_created: 2025-01-13T09:02:47Z
date_updated: 2025-01-13T09:02:47Z
file_id: '18831'
file_name: 2024_ScienceCompProg_Chalupa.pdf
file_size: 1173677
relation: main_file
success: 1
file_date_updated: 2025-01-13T09:02:47Z
has_accepted_license: '1'
intvolume: ' 240'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
call_identifier: H2020
grant_number: '101020093'
name: Vigilant Algorithmic Monitoring of Software
publication: Science of Computer Programming
publication_identifier:
issn:
- 0167-6423
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
record:
- id: '12856'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: 'VAMOS: Middleware for best-effort third-party monitoring'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 240
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18170'
abstract:
- lang: eng
text: 'This study presents a graphene field-effect transistor (gFET) biosensor with
dual detection capabilities for SARS-CoV-2: one RNA detection assay to confirm
viral positivity and the other for nucleocapsid (N-)protein detection as a proxy
for infectiousness of the patient. This technology can be rapidly adapted to emerging
infectious diseases, making an essential tool to contain future pandemics. To
detect viral RNA, the highly conserved E-gene of the virus was targeted, allowing
for the determination of SARS-CoV-2 presence or absence using nasopharyngeal swab
samples. For N-protein detection, specific antibodies were used. Tested on 213
clinical nasopharyngeal samples, the gFET biosensor showed good correlation with
RT-PCR cycle threshold values, proving its high sensitivity in detecting SARS-CoV-2
RNA. Specificity was confirmed using 21 pre-pandemic samples positive for other
respiratory viruses. The gFET biosensor had a limit of detection (LOD) for N-protein
of 0.9 pM, establishing a foundation for the development of a sensitive tool for
monitoring active viral infection. Results of gFET based N-protein detection corresponded
to the results of virus culture in all 16 available clinical samples and thus
it also proved its capability to serve as a proxy for infectivity. Overall, these
findings support the potential of the gFET biosensor as a point-of-care device
for rapid diagnosis of SARS-CoV-2 infection and indirect assessment of infectiousness
in patients, providing additional information for clinical and public health decision-making.'
acknowledgement: 'This research was funded in whole by the Austrian Science Fund (FWF)
[P 35103-B, Grant-DOI: 10.55776/P35103]. For open access purposes, the author has
applied a CC BY public copyright license to any author-accepted manuscript version
arising from this submission. We would like to thank Olfert Landt for advice on
ssDNA probe design; Rui Qiang Chen, Jennifer Stock, and Christine Wukotitsch for
their excellent support with ONT sequencing; Christoph Köppl and Andreas Fischer
for excellent support in recombinant N protein expression and purification; and
the whole team at the division of clinical virology for their support with standard
diagnostics.'
article_number: '116807'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Anna Nele
full_name: Herdina, Anna Nele
last_name: Herdina
- first_name: Anil
full_name: Bozdogan, Anil
last_name: Bozdogan
- first_name: Patrik
full_name: Aspermair, Patrik
last_name: Aspermair
- first_name: Jakub
full_name: Dostalek, Jakub
last_name: Dostalek
- first_name: Miriam
full_name: Klausberger, Miriam
last_name: Klausberger
- first_name: Nico
full_name: Lingg, Nico
last_name: Lingg
- first_name: Monika
full_name: Cserjan-Puschmann, Monika
last_name: Cserjan-Puschmann
- first_name: Patricia Pereira
full_name: Aguilar, Patricia Pereira
last_name: Aguilar
- first_name: Simone
full_name: Auer, Simone
last_name: Auer
- first_name: Halil
full_name: Demirtas, Halil
last_name: Demirtas
- first_name: Jakob
full_name: Andersson, Jakob
id: 3a5f4167-9bd9-11ed-bd12-a1446d38776f
last_name: Andersson
- first_name: Felix
full_name: Lötsch, Felix
last_name: Lötsch
- first_name: Barbara
full_name: Holzer, Barbara
last_name: Holzer
- first_name: Adi
full_name: Steinrigl, Adi
last_name: Steinrigl
- first_name: Florian
full_name: Thalhammer, Florian
last_name: Thalhammer
- first_name: Julia
full_name: Schellnegger, Julia
last_name: Schellnegger
- first_name: Monika
full_name: Breuer, Monika
last_name: Breuer
- first_name: Wolfgang
full_name: Knoll, Wolfgang
last_name: Knoll
- first_name: Robert
full_name: Strassl, Robert
last_name: Strassl
citation:
ama: 'Herdina AN, Bozdogan A, Aspermair P, et al. Bridging basic science and applied
diagnostics: Comprehensive viral diagnostics enabled by graphene-based electronic
biosensor technology advancements. Biosensors and Bioelectronics. 2025;267.
doi:10.1016/j.bios.2024.116807'
apa: 'Herdina, A. N., Bozdogan, A., Aspermair, P., Dostalek, J., Klausberger, M.,
Lingg, N., … Strassl, R. (2025). Bridging basic science and applied diagnostics:
Comprehensive viral diagnostics enabled by graphene-based electronic biosensor
technology advancements. Biosensors and Bioelectronics. Elsevier. https://doi.org/10.1016/j.bios.2024.116807'
chicago: 'Herdina, Anna Nele, Anil Bozdogan, Patrik Aspermair, Jakub Dostalek, Miriam
Klausberger, Nico Lingg, Monika Cserjan-Puschmann, et al. “Bridging Basic Science
and Applied Diagnostics: Comprehensive Viral Diagnostics Enabled by Graphene-Based
Electronic Biosensor Technology Advancements.” Biosensors and Bioelectronics.
Elsevier, 2025. https://doi.org/10.1016/j.bios.2024.116807.'
ieee: 'A. N. Herdina et al., “Bridging basic science and applied diagnostics:
Comprehensive viral diagnostics enabled by graphene-based electronic biosensor
technology advancements,” Biosensors and Bioelectronics, vol. 267. Elsevier,
2025.'
ista: 'Herdina AN, Bozdogan A, Aspermair P, Dostalek J, Klausberger M, Lingg N,
Cserjan-Puschmann M, Aguilar PP, Auer S, Demirtas H, Andersson J, Lötsch F, Holzer
B, Steinrigl A, Thalhammer F, Schellnegger J, Breuer M, Knoll W, Strassl R. 2025.
Bridging basic science and applied diagnostics: Comprehensive viral diagnostics
enabled by graphene-based electronic biosensor technology advancements. Biosensors
and Bioelectronics. 267, 116807.'
mla: 'Herdina, Anna Nele, et al. “Bridging Basic Science and Applied Diagnostics:
Comprehensive Viral Diagnostics Enabled by Graphene-Based Electronic Biosensor
Technology Advancements.” Biosensors and Bioelectronics, vol. 267, 116807,
Elsevier, 2025, doi:10.1016/j.bios.2024.116807.'
short: A.N. Herdina, A. Bozdogan, P. Aspermair, J. Dostalek, M. Klausberger, N.
Lingg, M. Cserjan-Puschmann, P.P. Aguilar, S. Auer, H. Demirtas, J. Andersson,
F. Lötsch, B. Holzer, A. Steinrigl, F. Thalhammer, J. Schellnegger, M. Breuer,
W. Knoll, R. Strassl, Biosensors and Bioelectronics 267 (2025).
date_created: 2024-10-06T22:01:11Z
date_published: 2025-01-01T00:00:00Z
date_updated: 2025-02-27T12:34:07Z
day: '01'
ddc:
- '570'
department:
- _id: LeSa
doi: 10.1016/j.bios.2024.116807
external_id:
isi:
- '001328413700001'
pmid:
- '39341071'
file:
- access_level: open_access
checksum: 208ac27dab27af792d198fcb74af8756
content_type: application/pdf
creator: dernst
date_created: 2025-01-13T11:14:32Z
date_updated: 2025-01-13T11:14:32Z
file_id: '18843'
file_name: 2025_BiosensorsBioelectronics_Herdina.pdf
file_size: 4135372
relation: main_file
success: 1
file_date_updated: 2025-01-13T11:14:32Z
has_accepted_license: '1'
intvolume: ' 267'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: Biosensors and Bioelectronics
publication_identifier:
eissn:
- 1873-4235
issn:
- 0956-5663
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Bridging basic science and applied diagnostics: Comprehensive viral diagnostics
enabled by graphene-based electronic biosensor technology advancements'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 267
year: '2025'
...