---
_id: '14963'
abstract:
- lang: eng
  text: "Unsupervised object-centric learning methods allow the partitioning of scenes\r\ninto
    entities without additional localization information and are excellent\r\ncandidates
    for reducing the annotation burden of multiple-object tracking (MOT)\r\npipelines.
    Unfortunately, they lack two key properties: objects are often split\r\ninto parts
    and are not consistently tracked over time. In fact,\r\nstate-of-the-art models
    achieve pixel-level accuracy and temporal consistency\r\nby relying on supervised
    object detection with additional ID labels for the\r\nassociation through time.
    This paper proposes a video object-centric model for\r\nMOT. It consists of an
    index-merge module that adapts the object-centric slots\r\ninto detection outputs
    and an object memory module that builds complete object\r\nprototypes to handle
    occlusions. Benefited from object-centric learning, we\r\nonly require sparse
    detection labels (0%-6.25%) for object localization and\r\nfeature binding. Relying
    on our self-supervised\r\nExpectation-Maximization-inspired loss for object association,
    our approach\r\nrequires no ID labels. Our experiments significantly narrow the
    gap between the\r\nexisting object-centric model and the fully supervised state-of-the-art
    and\r\noutperform several unsupervised trackers."
article_number: '2309.00233'
article_processing_charge: No
arxiv: 1
author:
- first_name: Zixu
  full_name: Zhao, Zixu
  last_name: Zhao
- first_name: Jiaze
  full_name: Wang, Jiaze
  last_name: Wang
- first_name: Max
  full_name: Horn, Max
  last_name: Horn
- first_name: Yizhuo
  full_name: Ding, Yizhuo
  last_name: Ding
- first_name: Tong
  full_name: He, Tong
  last_name: He
- first_name: Zechen
  full_name: Bai, Zechen
  last_name: Bai
- first_name: Dominik
  full_name: Zietlow, Dominik
  last_name: Zietlow
- first_name: Carl-Johann Simon-Gabriel
  full_name: Carl-Johann Simon-Gabriel, Carl-Johann Simon-Gabriel
  last_name: Carl-Johann Simon-Gabriel
- first_name: Bing
  full_name: Shuai, Bing
  last_name: Shuai
- first_name: Zhuowen
  full_name: Tu, Zhuowen
  last_name: Tu
- first_name: Thomas
  full_name: Brox, Thomas
  last_name: Brox
- first_name: Bernt
  full_name: Schiele, Bernt
  last_name: Schiele
- first_name: Yanwei
  full_name: Fu, Yanwei
  last_name: Fu
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Zheng
  full_name: Zhang, Zheng
  last_name: Zhang
- first_name: Tianjun
  full_name: Xiao, Tianjun
  last_name: Xiao
citation:
  ama: Zhao Z, Wang J, Horn M, et al. Object-centric multiple object tracking. <i>arXiv</i>.
    doi:<a href="https://doi.org/10.48550/arXiv.2309.00233">10.48550/arXiv.2309.00233</a>
  apa: Zhao, Z., Wang, J., Horn, M., Ding, Y., He, T., Bai, Z., … Xiao, T. (n.d.).
    Object-centric multiple object tracking. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2309.00233">https://doi.org/10.48550/arXiv.2309.00233</a>
  chicago: Zhao, Zixu, Jiaze Wang, Max Horn, Yizhuo Ding, Tong He, Zechen Bai, Dominik
    Zietlow, et al. “Object-Centric Multiple Object Tracking.” <i>ArXiv</i>, n.d.
    <a href="https://doi.org/10.48550/arXiv.2309.00233">https://doi.org/10.48550/arXiv.2309.00233</a>.
  ieee: Z. Zhao <i>et al.</i>, “Object-centric multiple object tracking,” <i>arXiv</i>.
    .
  ista: Zhao Z, Wang J, Horn M, Ding Y, He T, Bai Z, Zietlow D, Carl-Johann Simon-Gabriel
    C-JS-G, Shuai B, Tu Z, Brox T, Schiele B, Fu Y, Locatello F, Zhang Z, Xiao T.
    Object-centric multiple object tracking. arXiv, 2309.00233.
  mla: Zhao, Zixu, et al. “Object-Centric Multiple Object Tracking.” <i>ArXiv</i>,
    2309.00233, doi:<a href="https://doi.org/10.48550/arXiv.2309.00233">10.48550/arXiv.2309.00233</a>.
  short: Z. Zhao, J. Wang, M. Horn, Y. Ding, T. He, Z. Bai, D. Zietlow, C.-J.S.-G.
    Carl-Johann Simon-Gabriel, B. Shuai, Z. Tu, T. Brox, B. Schiele, Y. Fu, F. Locatello,
    Z. Zhang, T. Xiao, ArXiv (n.d.).
date_created: 2024-02-08T15:34:43Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2024-02-12T10:16:21Z
day: '01'
department:
- _id: FrLo
doi: 10.48550/arXiv.2309.00233
extern: '1'
external_id:
  arxiv:
  - '2309.00233'
fulldoi: https://doi.org/10.48550/arXiv.2309.00233
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2309.00233'
month: '09'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Object-centric multiple object tracking
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
OA_place: repository
_id: '14965'
abstract:
- lang: eng
  text: 'A method of determining a correspondence between a first biological property
    of a cell and one or more further biological properties of cells is provided.
    The first biological property and the further biological properties are determined
    by different analysis techniques and each are contained in a respective one of
    a plurality of sets of biological properties. The method includes the steps of:
    converting the plurality of sets of biological properties into corresponding representations
    in a representation format which is invariant to the technologies used to derive
    the biological properties; determining, in said representation format, a representation
    from each of the converted sets of further biological properties which most closely
    matches the first representation of the first biological property; and re-converting
    the determined representations from the representation format back to the biological
    properties associated with the determined representations and thereby determining
    a correspondence between the first biological property and each of the further
    biological properties.'
applicant:
- ETH Zürich
application_date: 2021-04-21
application_number: PCT/EP2021/060318
article_processing_charge: No
author:
- first_name: Joanna
  full_name: Ficek, Joanna
  last_name: Ficek
- first_name: Kjong-Van
  full_name: Lehmann, Kjong-Van
  last_name: Lehmann
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: 'Gunnar '
  full_name: 'Raetsch, Gunnar '
  last_name: Raetsch
- first_name: Stefan
  full_name: Stark, Stefan
  last_name: Stark
citation:
  ama: Ficek J, Lehmann K-V, Locatello F, Raetsch G, Stark S. Methods of determining
    correspondences between biological properties of cells. 2023.
  apa: Ficek, J., Lehmann, K.-V., Locatello, F., Raetsch, G., &#38; Stark, S. (2023).
    Methods of determining correspondences between biological properties of cells.
  chicago: Ficek, Joanna, Kjong-Van Lehmann, Francesco Locatello, Gunnar  Raetsch,
    and Stefan Stark. “Methods of Determining Correspondences between Biological Properties
    of Cells,” 2023.
  ieee: J. Ficek, K.-V. Lehmann, F. Locatello, G. Raetsch, and S. Stark, “Methods
    of determining correspondences between biological properties of cells.” 2023.
  ista: Ficek J, Lehmann K-V, Locatello F, Raetsch G, Stark S. 2023. Methods of determining
    correspondences between biological properties of cells.
  mla: Ficek, Joanna, et al. <i>Methods of Determining Correspondences between Biological
    Properties of Cells</i>. 2023.
  short: J. Ficek, K.-V. Lehmann, F. Locatello, G. Raetsch, S. Stark, (2023).
date_created: 2024-02-08T15:52:21Z
date_published: 2023-05-25T00:00:00Z
date_updated: 2025-01-29T10:53:48Z
day: '25'
ddc:
- '540'
department:
- _id: FrLo
extern: '1'
file:
- access_level: open_access
  checksum: 55ed444b176b48e4fb4d609ea895de36
  content_type: application/pdf
  creator: ptazenko
  date_created: 2024-02-08T15:41:51Z
  date_updated: 2024-02-08T15:41:51Z
  file_id: '14966'
  file_name: Patent_FrLo_US20230162818A1.pdf
  file_size: 2893462
  relation: main_file
  success: 1
file_date_updated: 2024-02-08T15:41:51Z
has_accepted_license: '1'
ipc: C12Q1/68 ; G06V10/82 ; G06V20/69 ; G16B40/30
ipn: US20230162818A1
month: '05'
oa: 1
oa_version: Published Version
page: '9'
publication_date: 2023-05-25
status: public
title: Methods of determining correspondences between biological properties of cells
type: patent
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2023'
...
---
_id: '14974'
abstract:
- lang: eng
  text: "The field of machine learning and AI has witnessed remarkable breakthroughs
    with the emergence of LLMs, which have also sparked a lively debate in the causal
    community. As researchers in this field, we are interested in exploring how LLMs
    relate to causality research, and how we can leverage the technology to advance
    it. In the second conference of Causal Learning and Reasoning (CLeaR), 2023, we
    held a round table discussion to gather and integrate the diverse perspectives
    of the CLeaR community on this topic.\r\nThere is a general consensus that LLMs
    are not yet capable of causal reasoning at the current\r\nstage but has a lot
    of potential with public available information by CLeaR 2023. Enhancing causal
    machine learning is vital not only for its own sake but also to help LLMs improve
    their performance, especially regarding trustworthiness. In this document, we
    present both the summary and the raw outcome of the round table discussion. We
    acknowledge that with the progress of both fields, the opportunities and impact
    may rapidly change. We will repeat the same exercise in CLeaR 2024 to document
    the evolution."
article_processing_charge: No
author:
- first_name: Cheng
  full_name: Zhang, Cheng
  last_name: Zhang
- first_name: Dominik
  full_name: Janzing, Dominik
  last_name: Janzing
- first_name: 'Mihaela '
  full_name: 'van der Schaar, Mihaela '
  last_name: van der Schaar
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Peter
  full_name: Spirtes, Peter
  last_name: Spirtes
- first_name: Kun
  full_name: Zhang, Kun
  last_name: Zhang
- first_name: Bernhard
  full_name: Schölkopf, Bernhard
  last_name: Schölkopf
- first_name: Caroline
  full_name: Uhler, Caroline
  id: 49ADD78E-F248-11E8-B48F-1D18A9856A87
  last_name: Uhler
  orcid: 0000-0002-7008-0216
citation:
  ama: 'Zhang C, Janzing D, van der Schaar M, et al. Causality in the time of LLMs:
    Round table discussion results of CLeaR 2023. In: <i>2nd Conference on Causal
    Learning and Reasoning</i>.'
  apa: 'Zhang, C., Janzing, D., van der Schaar, M., Locatello, F., Spirtes, P., Zhang,
    K., … Uhler, C. (n.d.). Causality in the time of LLMs: Round table discussion
    results of CLeaR 2023. In <i>2nd Conference on Causal Learning and Reasoning</i>.
    Tübingen, Germany.'
  chicago: 'Zhang, Cheng, Dominik Janzing, Mihaela  van der Schaar, Francesco Locatello,
    Peter Spirtes, Kun Zhang, Bernhard Schölkopf, and Caroline Uhler. “Causality in
    the Time of LLMs: Round Table Discussion Results of CLeaR 2023.” In <i>2nd Conference
    on Causal Learning and Reasoning</i>, n.d.'
  ieee: 'C. Zhang <i>et al.</i>, “Causality in the time of LLMs: Round table discussion
    results of CLeaR 2023,” in <i>2nd Conference on Causal Learning and Reasoning</i>,
    Tübingen, Germany.'
  ista: 'Zhang C, Janzing D, van der Schaar M, Locatello F, Spirtes P, Zhang K, Schölkopf
    B, Uhler C. Causality in the time of LLMs: Round table discussion results of CLeaR
    2023. 2nd Conference on Causal Learning and Reasoning. CLeaR: Conference on Causal
    Learning and Reasoning.'
  mla: 'Zhang, Cheng, et al. “Causality in the Time of LLMs: Round Table Discussion
    Results of CLeaR 2023.” <i>2nd Conference on Causal Learning and Reasoning</i>.'
  short: C. Zhang, D. Janzing, M. van der Schaar, F. Locatello, P. Spirtes, K. Zhang,
    B. Schölkopf, C. Uhler, in:, 2nd Conference on Causal Learning and Reasoning,
    n.d.
conference:
  end_date: 2023-04-14
  location: Tübingen, Germany
  name: 'CLeaR: Conference on Causal Learning and Reasoning'
  start_date: 2023-04-11
date_created: 2024-02-08T16:03:18Z
date_published: 2023-05-01T00:00:00Z
date_updated: 2025-08-05T11:19:37Z
day: '01'
ddc:
- '000'
department:
- _id: FrLo
extern: '1'
file:
- access_level: open_access
  checksum: 105ff58e55de866ce76967f3a95e82f7
  content_type: application/pdf
  creator: ptazenko
  date_created: 2024-02-08T16:03:08Z
  date_updated: 2024-02-08T16:03:08Z
  file_id: '14975'
  file_name: CLeaR23_roundtable_discussion.pdf
  file_size: 215629
  relation: main_file
file_date_updated: 2024-02-08T16:03:08Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Submitted Version
publication: 2nd Conference on Causal Learning and Reasoning
publication_status: submitted
quality_controlled: '1'
status: public
title: 'Causality in the time of LLMs: Round table discussion results of CLeaR 2023'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14985'
abstract:
- lang: eng
  text: Lead sulfide (PbS) presents large potential in thermoelectric application
    due to its earth-abundant S element. However, its inferior average ZT (ZTave)
    value makes PbS less competitive with its analogs PbTe and PbSe. To promote its
    thermoelectric performance, this study implements strategies of continuous Se
    alloying and Cu interstitial doping to synergistically tune thermal and electrical
    transport properties in n-type PbS. First, the lattice parameter of 5.93 Å in
    PbS is linearly expanded to 6.03 Å in PbS0.5Se0.5 with increasing Se alloying
    content. This expanded lattice in Se-alloyed PbS not only intensifies phonon scattering
    but also facilitates the formation of Cu interstitials. Based on the PbS0.6Se0.4
    content with the minimal lattice thermal conductivity, Cu interstitials are introduced
    to improve the electron density, thus boosting the peak power factor, from 3.88 μW cm−1 K−2
    in PbS0.6Se0.4 to 20.58 μW cm−1 K−2 in PbS0.6Se0.4−1%Cu. Meanwhile, the lattice
    thermal conductivity in PbS0.6Se0.4−x%Cu (x = 0–2) is further suppressed due to
    the strong strain field caused by Cu interstitials. Finally, with the lowered
    thermal conductivity and high electrical transport properties, a peak ZT ~1.1
    and ZTave ~0.82 can be achieved in PbS0.6Se0.4 − 1%Cu at 300–773K, which outperforms
    previously reported n-type PbS.
acknowledgement: 'The authors would like to acknowledge the strong supportof microstructure
  observation from Center for HighPressure Science and Technology Advanced Research(HPSTAR).
  We acknowledge the financial support fromthe  National  Natural  Science  Foundation  of  China:52172236,
  the Fundamental Research Funds for theCentral Universities: xtr042021007, Top Young
  TalentsProgramme of Xi''an Jiaotong University and NationalScience Fund for Distinguished
  Young Scholars: 51925101.'
article_processing_charge: Yes
article_type: original
author:
- first_name: Zhengtao
  full_name: Liu, Zhengtao
  last_name: Liu
- first_name: Tao
  full_name: Hong, Tao
  last_name: Hong
- first_name: Liqing
  full_name: Xu, Liqing
  last_name: Xu
- first_name: Sining
  full_name: Wang, Sining
  last_name: Wang
- first_name: Xiang
  full_name: Gao, Xiang
  last_name: Gao
- first_name: Cheng
  full_name: Chang, Cheng
  id: 9E331C2E-9F27-11E9-AE48-5033E6697425
  last_name: Chang
  orcid: 0000-0002-9515-4277
- first_name: Xiangdong
  full_name: Ding, Xiangdong
  last_name: Ding
- first_name: Yu
  full_name: Xiao, Yu
  last_name: Xiao
- first_name: Li‐Dong
  full_name: Zhao, Li‐Dong
  last_name: Zhao
citation:
  ama: Liu Z, Hong T, Xu L, et al. Lattice expansion enables interstitial doping to
    achieve a high average ZT in n‐type PbS. <i>Interdisciplinary Materials</i>. 2023;2(1):161-170.
    doi:<a href="https://doi.org/10.1002/idm2.12056">10.1002/idm2.12056</a>
  apa: Liu, Z., Hong, T., Xu, L., Wang, S., Gao, X., Chang, C., … Zhao, L. (2023).
    Lattice expansion enables interstitial doping to achieve a high average ZT in
    n‐type PbS. <i>Interdisciplinary Materials</i>. Wiley. <a href="https://doi.org/10.1002/idm2.12056">https://doi.org/10.1002/idm2.12056</a>
  chicago: Liu, Zhengtao, Tao Hong, Liqing Xu, Sining Wang, Xiang Gao, Cheng Chang,
    Xiangdong Ding, Yu Xiao, and Li‐Dong Zhao. “Lattice Expansion Enables Interstitial
    Doping to Achieve a High Average ZT in N‐type PbS.” <i>Interdisciplinary Materials</i>.
    Wiley, 2023. <a href="https://doi.org/10.1002/idm2.12056">https://doi.org/10.1002/idm2.12056</a>.
  ieee: Z. Liu <i>et al.</i>, “Lattice expansion enables interstitial doping to achieve
    a high average ZT in n‐type PbS,” <i>Interdisciplinary Materials</i>, vol. 2,
    no. 1. Wiley, pp. 161–170, 2023.
  ista: Liu Z, Hong T, Xu L, Wang S, Gao X, Chang C, Ding X, Xiao Y, Zhao L. 2023.
    Lattice expansion enables interstitial doping to achieve a high average ZT in
    n‐type PbS. Interdisciplinary Materials. 2(1), 161–170.
  mla: Liu, Zhengtao, et al. “Lattice Expansion Enables Interstitial Doping to Achieve
    a High Average ZT in N‐type PbS.” <i>Interdisciplinary Materials</i>, vol. 2,
    no. 1, Wiley, 2023, pp. 161–70, doi:<a href="https://doi.org/10.1002/idm2.12056">10.1002/idm2.12056</a>.
  short: Z. Liu, T. Hong, L. Xu, S. Wang, X. Gao, C. Chang, X. Ding, Y. Xiao, L. Zhao,
    Interdisciplinary Materials 2 (2023) 161–170.
date_created: 2024-02-14T12:12:17Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2024-02-19T10:01:26Z
day: '01'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1002/idm2.12056
file:
- access_level: open_access
  checksum: 7b5e8210ef1434feb173022c6dbbee0c
  content_type: application/pdf
  creator: dernst
  date_created: 2024-02-19T09:58:32Z
  date_updated: 2024-02-19T09:58:32Z
  file_id: '15015'
  file_name: 2023_InterdiscMaterials_Liu.pdf
  file_size: 4675941
  relation: main_file
  success: 1
file_date_updated: 2024-02-19T09:58:32Z
fulldoi: https://doi.org/10.1002/idm2.12056
has_accepted_license: '1'
intvolume: '         2'
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 161-170
publication: Interdisciplinary Materials
publication_identifier:
  eissn:
  - 2767-441X
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Lattice expansion enables interstitial doping to achieve a high average ZT
  in n‐type PbS
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2023'
...
---
_id: '14989'
abstract:
- lang: eng
  text: "Encryption alone is not enough for secure end-to end encrypted messaging:
    a server must also honestly serve public keys to users. Key transparency has been
    presented as an efficient\r\nsolution for detecting (and hence deterring) a server
    that attempts to dishonestly serve keys. Key transparency involves two major components:
    (1) a username to public key mapping, stored and cryptographically committed to
    by the server, and, (2) an outof-band consistency protocol for serving short commitments
    to users. In the setting of real-world deployments and supporting production scale,
    new challenges must be considered for both of these components. We enumerate these
    challenges and provide solutions to address them. In particular, we design and
    implement a memory-optimized and privacy-preserving verifiable data structure
    for committing to the username to public key store.\r\nTo make this implementation
    viable for production, we also integrate support for persistent and distributed
    storage. We also propose a future-facing solution, termed “compaction”, as\r\na
    mechanism for mitigating practical issues that arise from dealing with infinitely
    growing server data structures. Finally, we implement a consensusless solution
    that achieves the minimum requirements for a service that consistently distributes
    commitments for a transparency application, providing a much more efficient protocol
    for distributing small and consistent\r\ncommitments to users. This culminates
    in our production-grade implementation of a key transparency system (Parakeet)
    which we have open-sourced, along with a demonstration of feasibility through
    our benchmarks."
acknowledgement: This work is supported by the Novi team at Meta and funded in part
  by IC3 industry partners and NSF grant 1943499.
article_processing_charge: No
author:
- first_name: Harjasleen
  full_name: Malvai, Harjasleen
  last_name: Malvai
- first_name: Eleftherios
  full_name: Kokoris Kogias, Eleftherios
  id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
  last_name: Kokoris Kogias
  orcid: 0000-0002-8827-3382
- first_name: Alberto
  full_name: Sonnino, Alberto
  last_name: Sonnino
- first_name: Esha
  full_name: Ghosh, Esha
  last_name: Ghosh
- first_name: Ercan
  full_name: Oztürk, Ercan
  last_name: Oztürk
- first_name: Kevin
  full_name: Lewi, Kevin
  last_name: Lewi
- first_name: Sean
  full_name: Lawlor, Sean
  last_name: Lawlor
citation:
  ama: 'Malvai H, Kokoris Kogias E, Sonnino A, et al. Parakeet: Practical key transparency
    for end-to-end eEncrypted messaging. In: <i>Proceedings of the 2023 Network and
    Distributed System Security Symposium</i>. Internet Society; 2023. doi:<a href="https://doi.org/10.14722/ndss.2023.24545">10.14722/ndss.2023.24545</a>'
  apa: 'Malvai, H., Kokoris Kogias, E., Sonnino, A., Ghosh, E., Oztürk, E., Lewi,
    K., &#38; Lawlor, S. (2023). Parakeet: Practical key transparency for end-to-end
    eEncrypted messaging. In <i>Proceedings of the 2023 Network and Distributed System
    Security Symposium</i>. San Diego, CA, United States: Internet Society. <a href="https://doi.org/10.14722/ndss.2023.24545">https://doi.org/10.14722/ndss.2023.24545</a>'
  chicago: 'Malvai, Harjasleen, Eleftherios Kokoris Kogias, Alberto Sonnino, Esha
    Ghosh, Ercan Oztürk, Kevin Lewi, and Sean Lawlor. “Parakeet: Practical Key Transparency
    for End-to-End EEncrypted Messaging.” In <i>Proceedings of the 2023 Network and
    Distributed System Security Symposium</i>. Internet Society, 2023. <a href="https://doi.org/10.14722/ndss.2023.24545">https://doi.org/10.14722/ndss.2023.24545</a>.'
  ieee: 'H. Malvai <i>et al.</i>, “Parakeet: Practical key transparency for end-to-end
    eEncrypted messaging,” in <i>Proceedings of the 2023 Network and Distributed System
    Security Symposium</i>, San Diego, CA, United States, 2023.'
  ista: 'Malvai H, Kokoris Kogias E, Sonnino A, Ghosh E, Oztürk E, Lewi K, Lawlor
    S. 2023. Parakeet: Practical key transparency for end-to-end eEncrypted messaging.
    Proceedings of the 2023 Network and Distributed System Security Symposium. NDSS:
    Network and Distributed Systems Security.'
  mla: 'Malvai, Harjasleen, et al. “Parakeet: Practical Key Transparency for End-to-End
    EEncrypted Messaging.” <i>Proceedings of the 2023 Network and Distributed System
    Security Symposium</i>, Internet Society, 2023, doi:<a href="https://doi.org/10.14722/ndss.2023.24545">10.14722/ndss.2023.24545</a>.'
  short: H. Malvai, E. Kokoris Kogias, A. Sonnino, E. Ghosh, E. Oztürk, K. Lewi, S.
    Lawlor, in:, Proceedings of the 2023 Network and Distributed System Security Symposium,
    Internet Society, 2023.
conference:
  end_date: 2023-03-03
  location: San Diego, CA, United States
  name: 'NDSS: Network and Distributed Systems Security'
  start_date: 2023-02-27
date_created: 2024-02-14T14:20:40Z
date_published: 2023-03-01T00:00:00Z
date_updated: 2026-06-18T17:41:59Z
day: '01'
ddc:
- '000'
department:
- _id: ElKo
doi: 10.14722/ndss.2023.24545
fulldoi: https://doi.org/10.14722/ndss.2023.24545
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2023/081
month: '03'
oa: 1
oa_version: Published Version
publication: Proceedings of the 2023 Network and Distributed System Security Symposium
publication_identifier:
  isbn:
  - '1891562835'
publication_status: published
publisher: Internet Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Parakeet: Practical key transparency for end-to-end eEncrypted messaging'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14990'
abstract:
- lang: eng
  text: The software artefact to evaluate the approximation of stationary distributions
    implementation.
article_processing_charge: No
author:
- first_name: Tobias
  full_name: Meggendorfer, Tobias
  id: b21b0c15-30a2-11eb-80dc-f13ca25802e1
  last_name: Meggendorfer
  orcid: 0000-0002-1712-2165
citation:
  ama: 'Meggendorfer T. Artefact for: Correct Approximation of Stationary Distributions.
    2023. doi:<a href="https://doi.org/10.5281/ZENODO.7548214">10.5281/ZENODO.7548214</a>'
  apa: 'Meggendorfer, T. (2023). Artefact for: Correct Approximation of Stationary
    Distributions. Zenodo. <a href="https://doi.org/10.5281/ZENODO.7548214">https://doi.org/10.5281/ZENODO.7548214</a>'
  chicago: 'Meggendorfer, Tobias. “Artefact for: Correct Approximation of Stationary
    Distributions.” Zenodo, 2023. <a href="https://doi.org/10.5281/ZENODO.7548214">https://doi.org/10.5281/ZENODO.7548214</a>.'
  ieee: 'T. Meggendorfer, “Artefact for: Correct Approximation of Stationary Distributions.”
    Zenodo, 2023.'
  ista: 'Meggendorfer T. 2023. Artefact for: Correct Approximation of Stationary Distributions,
    Zenodo, <a href="https://doi.org/10.5281/ZENODO.7548214">10.5281/ZENODO.7548214</a>.'
  mla: 'Meggendorfer, Tobias. <i>Artefact for: Correct Approximation of Stationary
    Distributions</i>. Zenodo, 2023, doi:<a href="https://doi.org/10.5281/ZENODO.7548214">10.5281/ZENODO.7548214</a>.'
  short: T. Meggendorfer, (2023).
corr_author: '1'
date_created: 2024-02-14T14:27:06Z
date_published: 2023-01-18T00:00:00Z
date_updated: 2025-09-09T12:28:12Z
day: '18'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.5281/ZENODO.7548214
fulldoi: https://doi.org/10.5281/ZENODO.7548214
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.7548214
month: '01'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '13139'
    relation: used_in_publication
    status: public
status: public
title: 'Artefact for: Correct Approximation of Stationary Distributions'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14991'
abstract:
- lang: eng
  text: This repository contains the data, scripts, WRF codes and files required to
    reproduce the results of the manuscript "Assessing Memory in Convection Schemes
    Using Idealized Tests" submitted to the Journal of Advances in Modeling Earth
    Systems (JAMES).
article_processing_charge: No
author:
- first_name: Yi-Ling
  full_name: Hwong, Yi-Ling
  id: 1217aa61-4dd1-11ec-9ac3-f2ba3f17ee22
  last_name: Hwong
  orcid: 0000-0001-9281-3479
- first_name: Maxime
  full_name: Colin, Maxime
  last_name: Colin
- first_name: Philipp
  full_name: Aglas, Philipp
  id: 02eace56-97fc-11ee-b81a-f0939ca85a77
  last_name: Aglas
- first_name: Caroline J
  full_name: Muller, Caroline J
  id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
  last_name: Muller
  orcid: 0000-0001-5836-5350
- first_name: Steven C.
  full_name: Sherwood, Steven C.
  last_name: Sherwood
citation:
  ama: Hwong Y-L, Colin M, Aglas P, Muller CJ, Sherwood SC. Data-assessing memory
    in convection schemes using idealized tests. 2023. doi:<a href="https://doi.org/10.5281/ZENODO.7757041">10.5281/ZENODO.7757041</a>
  apa: Hwong, Y.-L., Colin, M., Aglas, P., Muller, C. J., &#38; Sherwood, S. C. (2023).
    Data-assessing memory in convection schemes using idealized tests. Zenodo. <a
    href="https://doi.org/10.5281/ZENODO.7757041">https://doi.org/10.5281/ZENODO.7757041</a>
  chicago: Hwong, Yi-Ling, Maxime Colin, Philipp Aglas, Caroline J Muller, and Steven
    C. Sherwood. “Data-Assessing Memory in Convection Schemes Using Idealized Tests.”
    Zenodo, 2023. <a href="https://doi.org/10.5281/ZENODO.7757041">https://doi.org/10.5281/ZENODO.7757041</a>.
  ieee: Y.-L. Hwong, M. Colin, P. Aglas, C. J. Muller, and S. C. Sherwood, “Data-assessing
    memory in convection schemes using idealized tests.” Zenodo, 2023.
  ista: Hwong Y-L, Colin M, Aglas P, Muller CJ, Sherwood SC. 2023. Data-assessing
    memory in convection schemes using idealized tests, Zenodo, <a href="https://doi.org/10.5281/ZENODO.7757041">10.5281/ZENODO.7757041</a>.
  mla: Hwong, Yi-Ling, et al. <i>Data-Assessing Memory in Convection Schemes Using
    Idealized Tests</i>. Zenodo, 2023, doi:<a href="https://doi.org/10.5281/ZENODO.7757041">10.5281/ZENODO.7757041</a>.
  short: Y.-L. Hwong, M. Colin, P. Aglas, C.J. Muller, S.C. Sherwood, (2023).
corr_author: '1'
date_created: 2024-02-14T14:37:57Z
date_published: 2023-06-23T00:00:00Z
date_updated: 2025-09-09T13:35:40Z
day: '23'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.5281/ZENODO.7757041
ec_funded: 1
fulldoi: https://doi.org/10.5281/ZENODO.7757041
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.7757041
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publisher: Zenodo
related_material:
  record:
  - id: '14654'
    relation: used_in_publication
    status: public
status: public
title: Data-assessing memory in convection schemes using idealized tests
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14992'
abstract:
- lang: eng
  text: In this chapter we first review the Levy–Lieb functional, which gives the
    lowest kinetic and interaction energy that can be reached with all possible quantum
    states having a given density. We discuss two possible convex generalizations
    of this functional, corresponding to using mixed canonical and grand-canonical
    states, respectively. We present some recent works about the local density approximation,
    in which the functionals get replaced by purely local functionals constructed
    using the uniform electron gas energy per unit volume. We then review the known
    upper and lower bounds on the Levy–Lieb functionals. We start with the kinetic
    energy alone, then turn to the classical interaction alone, before we are able
    to put everything together. A later section is devoted to the Hohenberg–Kohn theorem
    and the role of many-body unique continuation in its proof.
alternative_title:
- Mathematics and Molecular Modeling
article_processing_charge: No
arxiv: 1
author:
- first_name: Mathieu
  full_name: Lewin, Mathieu
  last_name: Lewin
- first_name: Elliott H.
  full_name: Lieb, Elliott H.
  last_name: Lieb
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: 'Lewin M, Lieb EH, Seiringer R. Universal Functionals in Density Functional
    Theory. In: Cances E, Friesecke G, eds. <i>Density Functional Theory</i>. 1st
    ed. MAMOMO. Springer; 2023:115-182. doi:<a href="https://doi.org/10.1007/978-3-031-22340-2_3">10.1007/978-3-031-22340-2_3</a>'
  apa: Lewin, M., Lieb, E. H., &#38; Seiringer, R. (2023). Universal Functionals in
    Density Functional Theory. In E. Cances &#38; G. Friesecke (Eds.), <i>Density
    Functional Theory</i> (1st ed., pp. 115–182). Springer. <a href="https://doi.org/10.1007/978-3-031-22340-2_3">https://doi.org/10.1007/978-3-031-22340-2_3</a>
  chicago: Lewin, Mathieu, Elliott H. Lieb, and Robert Seiringer. “Universal Functionals
    in Density Functional Theory.” In <i>Density Functional Theory</i>, edited by
    Eric Cances and Gero Friesecke, 1st ed., 115–82. MAMOMO. Springer, 2023. <a href="https://doi.org/10.1007/978-3-031-22340-2_3">https://doi.org/10.1007/978-3-031-22340-2_3</a>.
  ieee: M. Lewin, E. H. Lieb, and R. Seiringer, “Universal Functionals in Density
    Functional Theory,” in <i>Density Functional Theory</i>, 1st ed., E. Cances and
    G. Friesecke, Eds. Springer, 2023, pp. 115–182.
  ista: 'Lewin M, Lieb EH, Seiringer R. 2023.Universal Functionals in Density Functional
    Theory. In: Density Functional Theory. Mathematics and Molecular Modeling, , 115–182.'
  mla: Lewin, Mathieu, et al. “Universal Functionals in Density Functional Theory.”
    <i>Density Functional Theory</i>, edited by Eric Cances and Gero Friesecke, 1st
    ed., Springer, 2023, pp. 115–82, doi:<a href="https://doi.org/10.1007/978-3-031-22340-2_3">10.1007/978-3-031-22340-2_3</a>.
  short: M. Lewin, E.H. Lieb, R. Seiringer, in:, E. Cances, G. Friesecke (Eds.), Density
    Functional Theory, 1st ed., Springer, 2023, pp. 115–182.
date_created: 2024-02-14T14:44:33Z
date_published: 2023-07-19T00:00:00Z
date_updated: 2024-02-20T08:33:06Z
day: '19'
department:
- _id: RoSe
doi: 10.1007/978-3-031-22340-2_3
edition: '1'
editor:
- first_name: Eric
  full_name: Cances, Eric
  last_name: Cances
- first_name: Gero
  full_name: Friesecke, Gero
  last_name: Friesecke
external_id:
  arxiv:
  - '1912.10424'
fulldoi: https://doi.org/10.1007/978-3-031-22340-2_3
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1912.10424
month: '07'
oa: 1
oa_version: Preprint
page: 115-182
publication: Density Functional Theory
publication_identifier:
  eisbn:
  - '9783031223402'
  isbn:
  - '9783031223396'
  issn:
  - 3005-0286
publication_status: published
publisher: Springer
quality_controlled: '1'
series_title: MAMOMO
status: public
title: Universal Functionals in Density Functional Theory
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14993'
abstract:
- lang: eng
  text: "Traditional top-down approaches for global health have historically failed
    to achieve social progress (Hoffman et al., 2015; Hoffman & Røttingen, 2015).
    Recently, however, a more holistic, multi-level approach termed One Health (OH)
    (Osterhaus et al., 2020) is being adopted. Several sets of challenges have been
    identified for the implementation of OH (dos S. Ribeiro et al., 2019), including
    policy and funding, education and training, and multi-actor, multi-domain, and
    multi-level collaborations. These exist despite the increasing accessibility to\r\nknowledge
    and digital collaborative research tools through the internet. To address some
    of these challenges, we propose a general framework for grassroots community-based
    means of participatory research. Additionally, we present a specific roadmap to
    create a Machine Learning for Global Health community in Africa. The proposed
    framework aims to enable any small group of individuals with scarce resources
    to build and sustain an online community within approximately two years. We provide
    a discussion on the potential impact of the proposed framework for global health
    research collaborations."
acknowledgement: "Houcemeddine Turki’s contributions to this final output have been
  funded through the Adapting\r\nWikidata to support clinical practice using Data
  Science, Semantic Web and Machine Learning\r\nproject, which is part of the Wikimedia
  Research Fund maintained by the Wikimedia Foundation in San Francisco, California,
  United States of America."
article_processing_charge: No
author:
- first_name: Christopher
  full_name: Currin, Christopher
  id: e8321fc5-3091-11eb-8a53-83f309a11ac9
  last_name: Currin
  orcid: 0000-0002-4809-5059
- first_name: Mercy Nyamewaa
  full_name: Asiedu , Mercy Nyamewaa
  last_name: 'Asiedu '
- first_name: Chris
  full_name: Fourie, Chris
  last_name: Fourie
- first_name: Benjamin
  full_name: Rosman, Benjamin
  last_name: Rosman
- first_name: Houcemeddine
  full_name: Turki, Houcemeddine
  last_name: Turki
- first_name: Atnafu
  full_name: Lambebo Tonja, Atnafu
  last_name: Lambebo Tonja
- first_name: Jade
  full_name: Abbott, Jade
  last_name: Abbott
- first_name: Marvellous
  full_name: Ajala, Marvellous
  last_name: Ajala
- first_name: Sadiq Adewale
  full_name: Adedayo, Sadiq Adewale
  last_name: Adedayo
- first_name: Chris Chinenye
  full_name: Emezue, Chris Chinenye
  last_name: Emezue
- first_name: Daphne
  full_name: Machangara, Daphne
  last_name: Machangara
citation:
  ama: 'Currin C, Asiedu  MN, Fourie C, et al. A framework for grassroots research
    collaboration in machine learning and global health. In: <i>1st Workshop on Machine
    Learning &#38; Global Health</i>. OpenReview; 2023.'
  apa: 'Currin, C., Asiedu , M. N., Fourie, C., Rosman, B., Turki, H., Lambebo Tonja,
    A., … Machangara, D. (2023). A framework for grassroots research collaboration
    in machine learning and global health. In <i>1st Workshop on Machine Learning
    &#38; Global Health</i>. Kigali, Rwanda: OpenReview.'
  chicago: Currin, Christopher, Mercy Nyamewaa Asiedu , Chris Fourie, Benjamin Rosman,
    Houcemeddine Turki, Atnafu Lambebo Tonja, Jade Abbott, et al. “A Framework for
    Grassroots Research Collaboration in Machine Learning and Global Health.” In <i>1st
    Workshop on Machine Learning &#38; Global Health</i>. OpenReview, 2023.
  ieee: C. Currin <i>et al.</i>, “A framework for grassroots research collaboration
    in machine learning and global health,” in <i>1st Workshop on Machine Learning
    &#38; Global Health</i>, Kigali, Rwanda, 2023.
  ista: 'Currin C, Asiedu  MN, Fourie C, Rosman B, Turki H, Lambebo Tonja A, Abbott
    J, Ajala M, Adedayo SA, Emezue CC, Machangara D. 2023. A framework for grassroots
    research collaboration in machine learning and global health. 1st Workshop on
    Machine Learning &#38; Global Health. ICLR: International Conference on Learning
    Representations.'
  mla: Currin, Christopher, et al. “A Framework for Grassroots Research Collaboration
    in Machine Learning and Global Health.” <i>1st Workshop on Machine Learning &#38;
    Global Health</i>, OpenReview, 2023.
  short: C. Currin, M.N. Asiedu , C. Fourie, B. Rosman, H. Turki, A. Lambebo Tonja,
    J. Abbott, M. Ajala, S.A. Adedayo, C.C. Emezue, D. Machangara, in:, 1st Workshop
    on Machine Learning &#38; Global Health, OpenReview, 2023.
conference:
  end_date: 2023-05-05
  location: Kigali, Rwanda
  name: 'ICLR: International Conference on Learning Representations'
  start_date: 2023-05-05
date_created: 2024-02-14T15:11:48Z
date_published: 2023-03-02T00:00:00Z
date_updated: 2026-06-18T17:42:25Z
day: '02'
ddc:
- '000'
department:
- _id: TiVo
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://openreview.net/forum?id=jHY_G91R880
month: '03'
oa: 1
oa_version: Published Version
publication: 1st Workshop on Machine Learning & Global Health
publication_status: published
publisher: OpenReview
quality_controlled: '1'
status: public
title: A framework for grassroots research collaboration in machine learning and global
  health
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '14994'
abstract:
- lang: eng
  text: This resource contains the artifacts for reproducing the experimental results
    presented in the paper titled "A Flexible Toolchain for Symbolic Rabin Games under
    Fair and Stochastic Uncertainties" that has been submitted in CAV 2023.
article_processing_charge: No
author:
- first_name: Rupak
  full_name: Majumdar, Rupak
  last_name: Majumdar
- first_name: Kaushik
  full_name: Mallik, Kaushik
  id: 0834ff3c-6d72-11ec-94e0-b5b0a4fb8598
  last_name: Mallik
  orcid: 0000-0001-9864-7475
- first_name: Mateusz
  full_name: Rychlicki, Mateusz
  last_name: Rychlicki
- first_name: Anne-Kathrin
  full_name: Schmuck, Anne-Kathrin
  last_name: Schmuck
- first_name: Sadegh
  full_name: Soudjani, Sadegh
  last_name: Soudjani
citation:
  ama: Majumdar R, Mallik K, Rychlicki M, Schmuck A-K, Soudjani S. A flexible toolchain
    for symbolic rabin games under fair and stochastic uncertainties. 2023. doi:<a
    href="https://doi.org/10.5281/ZENODO.7877790">10.5281/ZENODO.7877790</a>
  apa: Majumdar, R., Mallik, K., Rychlicki, M., Schmuck, A.-K., &#38; Soudjani, S.
    (2023). A flexible toolchain for symbolic rabin games under fair and stochastic
    uncertainties. Zenodo. <a href="https://doi.org/10.5281/ZENODO.7877790">https://doi.org/10.5281/ZENODO.7877790</a>
  chicago: Majumdar, Rupak, Kaushik Mallik, Mateusz Rychlicki, Anne-Kathrin Schmuck,
    and Sadegh Soudjani. “A Flexible Toolchain for Symbolic Rabin Games under Fair
    and Stochastic Uncertainties.” Zenodo, 2023. <a href="https://doi.org/10.5281/ZENODO.7877790">https://doi.org/10.5281/ZENODO.7877790</a>.
  ieee: R. Majumdar, K. Mallik, M. Rychlicki, A.-K. Schmuck, and S. Soudjani, “A flexible
    toolchain for symbolic rabin games under fair and stochastic uncertainties.” Zenodo,
    2023.
  ista: Majumdar R, Mallik K, Rychlicki M, Schmuck A-K, Soudjani S. 2023. A flexible
    toolchain for symbolic rabin games under fair and stochastic uncertainties, Zenodo,
    <a href="https://doi.org/10.5281/ZENODO.7877790">10.5281/ZENODO.7877790</a>.
  mla: Majumdar, Rupak, et al. <i>A Flexible Toolchain for Symbolic Rabin Games under
    Fair and Stochastic Uncertainties</i>. Zenodo, 2023, doi:<a href="https://doi.org/10.5281/ZENODO.7877790">10.5281/ZENODO.7877790</a>.
  short: R. Majumdar, K. Mallik, M. Rychlicki, A.-K. Schmuck, S. Soudjani, (2023).
corr_author: '1'
date_created: 2024-02-14T15:13:00Z
date_published: 2023-04-28T00:00:00Z
date_updated: 2025-09-09T14:16:48Z
day: '28'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.5281/ZENODO.7877790
fulldoi: https://doi.org/10.5281/ZENODO.7877790
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.7877790
month: '04'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
  record:
  - id: '14758'
    relation: used_in_publication
    status: public
status: public
title: A flexible toolchain for symbolic rabin games under fair and stochastic uncertainties
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '15035'
abstract:
- lang: eng
  text: "This artifact aims to reproduce experiments from the paper Monitoring Hyperproperties
    With Prefix Transducers accepted at RV'23, and give further pointers to implementation
    of prefix transducers.\r\nIt has two parts: a pre-compiled docker image and sources
    that one can use to compile (locally or in docker) the software and run the experiments."
article_processing_charge: No
author:
- first_name: Marek
  full_name: Chalupa, Marek
  id: 87e34708-d6c6-11ec-9f5b-9391e7be2463
  last_name: Chalupa
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
citation:
  ama: Chalupa M, Henzinger TA. Monitoring hyperproperties with prefix transducers.
    2023. doi:<a href="https://doi.org/10.5281/ZENODO.8191723">10.5281/ZENODO.8191723</a>
  apa: Chalupa, M., &#38; Henzinger, T. A. (2023). Monitoring hyperproperties with
    prefix transducers. Zenodo. <a href="https://doi.org/10.5281/ZENODO.8191723">https://doi.org/10.5281/ZENODO.8191723</a>
  chicago: Chalupa, Marek, and Thomas A Henzinger. “Monitoring Hyperproperties with
    Prefix Transducers.” Zenodo, 2023. <a href="https://doi.org/10.5281/ZENODO.8191723">https://doi.org/10.5281/ZENODO.8191723</a>.
  ieee: M. Chalupa and T. A. Henzinger, “Monitoring hyperproperties with prefix transducers.”
    Zenodo, 2023.
  ista: Chalupa M, Henzinger TA. 2023. Monitoring hyperproperties with prefix transducers,
    Zenodo, <a href="https://doi.org/10.5281/ZENODO.8191723">10.5281/ZENODO.8191723</a>.
  mla: Chalupa, Marek, and Thomas A. Henzinger. <i>Monitoring Hyperproperties with
    Prefix Transducers</i>. Zenodo, 2023, doi:<a href="https://doi.org/10.5281/ZENODO.8191723">10.5281/ZENODO.8191723</a>.
  short: M. Chalupa, T.A. Henzinger, (2023).
corr_author: '1'
date_created: 2024-02-28T07:34:34Z
date_published: 2023-07-28T00:00:00Z
date_updated: 2025-04-14T09:42:55Z
day: '28'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.5281/ZENODO.8191723
ec_funded: 1
fulldoi: https://doi.org/10.5281/ZENODO.8191723
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.8191722
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publisher: Zenodo
related_material:
  record:
  - id: '14076'
    relation: used_in_publication
    status: public
status: public
title: Monitoring hyperproperties with prefix transducers
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '15085'
abstract:
- lang: eng
  text: The hydrogen-rich outer layers of massive stars can be removed by interactions
    with a binary companion. Theoretical models predict that this stripping produces
    a population of hot helium stars of ~2 to 8 solar masses (M☉), however, only one
    such system has been identified thus far. We used ultraviolet photometry to identify
    potential stripped helium stars then investigated 25 of them using optical spectroscopy.
    We identified stars with high temperatures (~60,000 to 100,000 kelvin), high surface
    gravities, and hydrogen-depleted surfaces; 16 stars also showed binary motion.
    These properties match expectations for stars with initial masses of 8 to 25 M☉
    that were stripped by binary interaction. Their masses fall in the gap between
    subdwarf helium stars and Wolf-Rayet stars. We propose that these stars could
    be progenitors of stripped-envelope supernovae.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: M. R.
  full_name: Drout, M. R.
  last_name: Drout
- first_name: Ylva Louise Linsdotter
  full_name: Götberg, Ylva Louise Linsdotter
  id: d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d
  last_name: Götberg
  orcid: 0000-0002-6960-6911
- first_name: B. A.
  full_name: Ludwig, B. A.
  last_name: Ludwig
- first_name: J. H.
  full_name: Groh, J. H.
  last_name: Groh
- first_name: S. E.
  full_name: de Mink, S. E.
  last_name: de Mink
- first_name: A. J. G.
  full_name: O’Grady, A. J. G.
  last_name: O’Grady
- first_name: N.
  full_name: Smith, N.
  last_name: Smith
citation:
  ama: Drout MR, Götberg YLL, Ludwig BA, et al. An observed population of intermediate-mass
    helium stars that have been stripped in binaries. <i>Science</i>. 2023;382(6676):1287-1291.
    doi:<a href="https://doi.org/10.1126/science.ade4970">10.1126/science.ade4970</a>
  apa: Drout, M. R., Götberg, Y. L. L., Ludwig, B. A., Groh, J. H., de Mink, S. E.,
    O’Grady, A. J. G., &#38; Smith, N. (2023). An observed population of intermediate-mass
    helium stars that have been stripped in binaries. <i>Science</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/science.ade4970">https://doi.org/10.1126/science.ade4970</a>
  chicago: Drout, M. R., Ylva Louise Linsdotter Götberg, B. A. Ludwig, J. H. Groh,
    S. E. de Mink, A. J. G. O’Grady, and N. Smith. “An Observed Population of Intermediate-Mass
    Helium Stars That Have Been Stripped in Binaries.” <i>Science</i>. American Association
    for the Advancement of Science, 2023. <a href="https://doi.org/10.1126/science.ade4970">https://doi.org/10.1126/science.ade4970</a>.
  ieee: M. R. Drout <i>et al.</i>, “An observed population of intermediate-mass helium
    stars that have been stripped in binaries,” <i>Science</i>, vol. 382, no. 6676.
    American Association for the Advancement of Science, pp. 1287–1291, 2023.
  ista: Drout MR, Götberg YLL, Ludwig BA, Groh JH, de Mink SE, O’Grady AJG, Smith
    N. 2023. An observed population of intermediate-mass helium stars that have been
    stripped in binaries. Science. 382(6676), 1287–1291.
  mla: Drout, M. R., et al. “An Observed Population of Intermediate-Mass Helium Stars
    That Have Been Stripped in Binaries.” <i>Science</i>, vol. 382, no. 6676, American
    Association for the Advancement of Science, 2023, pp. 1287–91, doi:<a href="https://doi.org/10.1126/science.ade4970">10.1126/science.ade4970</a>.
  short: M.R. Drout, Y.L.L. Götberg, B.A. Ludwig, J.H. Groh, S.E. de Mink, A.J.G.
    O’Grady, N. Smith, Science 382 (2023) 1287–1291.
date_created: 2024-03-05T09:40:28Z
date_published: 2023-12-14T00:00:00Z
date_updated: 2024-10-14T12:32:01Z
day: '14'
doi: 10.1126/science.ade4970
extern: '1'
external_id:
  arxiv:
  - '2307.00061'
  pmid:
  - '38096420'
fulldoi: https://doi.org/10.1126/science.ade4970
intvolume: '       382'
issue: '6676'
keyword:
- Stellar Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2307.00061
month: '12'
oa: 1
oa_version: None
page: 1287-1291
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA Website
    relation: press_release
    url: https://ista.ac.at/en/news/reaching-for-the-invisible-stars/
scopus_import: '1'
status: public
title: An observed population of intermediate-mass helium stars that have been stripped
  in binaries
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 382
year: '2023'
...
---
_id: '15129'
abstract:
- lang: eng
  text: Type I CRISPR-Cas systems employ multi-subunit Cascade effector complexes
    to target foreign nucleic acids for destruction. Here, we present structures of
    D. vulgaris type I-C Cascade at various stages of double-stranded (ds)DNA target
    capture, revealing mechanisms that underpin PAM recognition and Cascade allosteric
    activation. We uncover an interesting mechanism of non-target strand (NTS) DNA
    stabilization via stacking interactions with the “belly” subunits, securing the
    NTS in place. This “molecular seatbelt” mechanism facilitates efficient R-loop
    formation and prevents dsDNA reannealing. Additionally, we provide structural
    insights into how two anti-CRISPR (Acr) proteins utilize distinct strategies to
    achieve a shared mechanism of type I-C Cascade inhibition by blocking PAM scanning.
    These observations form a structural basis for directional R-loop formation and
    reveal how different Acr proteins have converged upon common molecular mechanisms
    to efficiently shut down CRISPR immunity.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Roisin E.
  full_name: O’Brien, Roisin E.
  last_name: O’Brien
- first_name: Jack Peter Kelly
  full_name: Bravo, Jack Peter Kelly
  id: 96aecfa5-8931-11ee-af30-aa6a5d6eee0e
  last_name: Bravo
  orcid: 0000-0003-0456-0753
- first_name: Delisa
  full_name: Ramos, Delisa
  last_name: Ramos
- first_name: Grace N.
  full_name: Hibshman, Grace N.
  last_name: Hibshman
- first_name: Jacquelyn T.
  full_name: Wright, Jacquelyn T.
  last_name: Wright
- first_name: David W.
  full_name: Taylor, David W.
  last_name: Taylor
citation:
  ama: O’Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW. Structural
    snapshots of R-loop formation by a type I-C CRISPR Cascade. <i>Molecular Cell</i>.
    2023;83(5):746-758.e5. doi:<a href="https://doi.org/10.1016/j.molcel.2023.01.024">10.1016/j.molcel.2023.01.024</a>
  apa: O’Brien, R. E., Bravo, J. P. K., Ramos, D., Hibshman, G. N., Wright, J. T.,
    &#38; Taylor, D. W. (2023). Structural snapshots of R-loop formation by a type
    I-C CRISPR Cascade. <i>Molecular Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.molcel.2023.01.024">https://doi.org/10.1016/j.molcel.2023.01.024</a>
  chicago: O’Brien, Roisin E., Jack Peter Kelly Bravo, Delisa Ramos, Grace N. Hibshman,
    Jacquelyn T. Wright, and David W. Taylor. “Structural Snapshots of R-Loop Formation
    by a Type I-C CRISPR Cascade.” <i>Molecular Cell</i>. Elsevier, 2023. <a href="https://doi.org/10.1016/j.molcel.2023.01.024">https://doi.org/10.1016/j.molcel.2023.01.024</a>.
  ieee: R. E. O’Brien, J. P. K. Bravo, D. Ramos, G. N. Hibshman, J. T. Wright, and
    D. W. Taylor, “Structural snapshots of R-loop formation by a type I-C CRISPR Cascade,”
    <i>Molecular Cell</i>, vol. 83, no. 5. Elsevier, p. 746–758.e5, 2023.
  ista: O’Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW. 2023. Structural
    snapshots of R-loop formation by a type I-C CRISPR Cascade. Molecular Cell. 83(5),
    746–758.e5.
  mla: O’Brien, Roisin E., et al. “Structural Snapshots of R-Loop Formation by a Type
    I-C CRISPR Cascade.” <i>Molecular Cell</i>, vol. 83, no. 5, Elsevier, 2023, p.
    746–758.e5, doi:<a href="https://doi.org/10.1016/j.molcel.2023.01.024">10.1016/j.molcel.2023.01.024</a>.
  short: R.E. O’Brien, J.P.K. Bravo, D. Ramos, G.N. Hibshman, J.T. Wright, D.W. Taylor,
    Molecular Cell 83 (2023) 746–758.e5.
date_created: 2024-03-20T10:40:56Z
date_published: 2023-03-02T00:00:00Z
date_updated: 2024-06-04T06:33:54Z
day: '02'
doi: 10.1016/j.molcel.2023.01.024
extern: '1'
external_id:
  pmid:
  - '36805026'
fulldoi: https://doi.org/10.1016/j.molcel.2023.01.024
intvolume: '        83'
issue: '5'
keyword:
- Cell Biology
- Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.molcel.2023.01.024
month: '03'
oa: 1
oa_version: Published Version
page: 746-758.e5
pmid: 1
publication: Molecular Cell
publication_identifier:
  issn:
  - 1097-2765
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Structural snapshots of R-loop formation by a type I-C CRISPR Cascade
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 83
year: '2023'
...
---
_id: '15130'
abstract:
- lang: eng
  text: Cas12a2 is a CRISPR-associated nuclease that performs RNA-guided, sequence-nonspecific
    degradation of single-stranded RNA, single-stranded DNA and double-stranded DNA
    following recognition of a complementary RNA target, culminating in abortive infection<jats:sup>1</jats:sup>.
    Here we report structures of Cas12a2 in binary, ternary and quaternary complexes
    to reveal a complete activation pathway. Our structures reveal that Cas12a2 is
    autoinhibited until binding a cognate RNA target, which exposes the RuvC active
    site within a large, positively charged cleft. Double-stranded DNA substrates
    are captured through duplex distortion and local melting, stabilized by pairs
    of ‘aromatic clamp’ residues that are crucial for double-stranded DNA degradation
    and in vivo immune system function. Our work provides a structural basis for this
    mechanism of abortive infection to achieve population-level immunity, which can
    be leveraged to create rational mutants that degrade a spectrum of collateral
    substrates.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Jack Peter Kelly
  full_name: Bravo, Jack Peter Kelly
  id: 96aecfa5-8931-11ee-af30-aa6a5d6eee0e
  last_name: Bravo
  orcid: 0000-0003-0456-0753
- first_name: Thomson
  full_name: Hallmark, Thomson
  last_name: Hallmark
- first_name: Bronson
  full_name: Naegle, Bronson
  last_name: Naegle
- first_name: Chase L.
  full_name: Beisel, Chase L.
  last_name: Beisel
- first_name: Ryan N.
  full_name: Jackson, Ryan N.
  last_name: Jackson
- first_name: David W.
  full_name: Taylor, David W.
  last_name: Taylor
citation:
  ama: Bravo JPK, Hallmark T, Naegle B, Beisel CL, Jackson RN, Taylor DW. RNA targeting
    unleashes indiscriminate nuclease activity of CRISPR–Cas12a2. <i>Nature</i>. 2023;613(7944):582-587.
    doi:<a href="https://doi.org/10.1038/s41586-022-05560-w">10.1038/s41586-022-05560-w</a>
  apa: Bravo, J. P. K., Hallmark, T., Naegle, B., Beisel, C. L., Jackson, R. N., &#38;
    Taylor, D. W. (2023). RNA targeting unleashes indiscriminate nuclease activity
    of CRISPR–Cas12a2. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-022-05560-w">https://doi.org/10.1038/s41586-022-05560-w</a>
  chicago: Bravo, Jack Peter Kelly, Thomson Hallmark, Bronson Naegle, Chase L. Beisel,
    Ryan N. Jackson, and David W. Taylor. “RNA Targeting Unleashes Indiscriminate
    Nuclease Activity of CRISPR–Cas12a2.” <i>Nature</i>. Springer Nature, 2023. <a
    href="https://doi.org/10.1038/s41586-022-05560-w">https://doi.org/10.1038/s41586-022-05560-w</a>.
  ieee: J. P. K. Bravo, T. Hallmark, B. Naegle, C. L. Beisel, R. N. Jackson, and D.
    W. Taylor, “RNA targeting unleashes indiscriminate nuclease activity of CRISPR–Cas12a2,”
    <i>Nature</i>, vol. 613, no. 7944. Springer Nature, pp. 582–587, 2023.
  ista: Bravo JPK, Hallmark T, Naegle B, Beisel CL, Jackson RN, Taylor DW. 2023. RNA
    targeting unleashes indiscriminate nuclease activity of CRISPR–Cas12a2. Nature.
    613(7944), 582–587.
  mla: Bravo, Jack Peter Kelly, et al. “RNA Targeting Unleashes Indiscriminate Nuclease
    Activity of CRISPR–Cas12a2.” <i>Nature</i>, vol. 613, no. 7944, Springer Nature,
    2023, pp. 582–87, doi:<a href="https://doi.org/10.1038/s41586-022-05560-w">10.1038/s41586-022-05560-w</a>.
  short: J.P.K. Bravo, T. Hallmark, B. Naegle, C.L. Beisel, R.N. Jackson, D.W. Taylor,
    Nature 613 (2023) 582–587.
date_created: 2024-03-20T10:41:36Z
date_published: 2023-01-04T00:00:00Z
date_updated: 2024-06-04T06:30:59Z
day: '04'
doi: 10.1038/s41586-022-05560-w
extern: '1'
external_id:
  pmid:
  - '36599980'
fulldoi: https://doi.org/10.1038/s41586-022-05560-w
intvolume: '       613'
issue: '7944'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41586-022-05560-w
month: '01'
oa: 1
oa_version: Published Version
page: 582-587
pmid: 1
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: RNA targeting unleashes indiscriminate nuclease activity of CRISPR–Cas12a2
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 613
year: '2023'
...
---
_id: '15148'
abstract:
- lang: eng
  text: 'The basic helix–loop–helix (bHLH) family of transcription factors recognizes
    DNA motifs known as E-boxes (CANNTG) and includes 108 members<jats:sup>1</jats:sup>.
    Here we investigate how chromatinized E-boxes are engaged by two structurally
    diverse bHLH proteins: the proto-oncogene MYC-MAX and the circadian transcription
    factor CLOCK-BMAL1 (refs. <jats:sup>2,3</jats:sup>). Both transcription factors
    bind to E-boxes preferentially near the nucleosomal entry–exit sites. Structural
    studies with engineered or native nucleosome sequences show that MYC-MAX or CLOCK-BMAL1
    triggers the release of DNA from histones to gain access. Atop the H2A–H2B acidic
    patch<jats:sup>4</jats:sup>, the CLOCK-BMAL1 Per-Arnt-Sim (PAS) dimerization domains
    engage the histone octamer disc. Binding of tandem E-boxes<jats:sup>5–7</jats:sup>
    at endogenous DNA sequences occurs through direct interactions between two CLOCK-BMAL1
    protomers and histones and is important for circadian cycling. At internal E-boxes,
    the MYC-MAX leucine zipper can also interact with histones H2B and H3, and its
    binding is indirectly enhanced by OCT4 elsewhere on the nucleosome. The nucleosomal
    E-box position and the type of bHLH dimerization domain jointly determine the
    histone contact, the affinity and the degree of competition and cooperativity
    with other nucleosome-bound factors.'
article_processing_charge: No
article_type: original
author:
- first_name: Alicia
  full_name: Michael, Alicia
  id: 6437c950-2a03-11ee-914d-d6476dd7b75c
  last_name: Michael
  orcid: 0000-0002-6080-839X
- first_name: Lisa
  full_name: Stoos, Lisa
  last_name: Stoos
- first_name: Priya
  full_name: Crosby, Priya
  last_name: Crosby
- first_name: Nikolas
  full_name: Eggers, Nikolas
  last_name: Eggers
- first_name: Xinyu Y.
  full_name: Nie, Xinyu Y.
  last_name: Nie
- first_name: Kristina
  full_name: Makasheva, Kristina
  last_name: Makasheva
- first_name: Martina
  full_name: Minnich, Martina
  last_name: Minnich
- first_name: Kelly L.
  full_name: Healy, Kelly L.
  last_name: Healy
- first_name: Joscha
  full_name: Weiss, Joscha
  last_name: Weiss
- first_name: Georg
  full_name: Kempf, Georg
  last_name: Kempf
- first_name: Simone
  full_name: Cavadini, Simone
  last_name: Cavadini
- first_name: Lukas
  full_name: Kater, Lukas
  last_name: Kater
- first_name: Jan
  full_name: Seebacher, Jan
  last_name: Seebacher
- first_name: Luca
  full_name: Vecchia, Luca
  last_name: Vecchia
- first_name: Deyasini
  full_name: Chakraborty, Deyasini
  last_name: Chakraborty
- first_name: Luke
  full_name: Isbel, Luke
  last_name: Isbel
- first_name: Ralph S.
  full_name: Grand, Ralph S.
  last_name: Grand
- first_name: Florian
  full_name: Andersch, Florian
  last_name: Andersch
- first_name: Jennifer L.
  full_name: Fribourgh, Jennifer L.
  last_name: Fribourgh
- first_name: Dirk
  full_name: Schübeler, Dirk
  last_name: Schübeler
- first_name: Johannes
  full_name: Zuber, Johannes
  last_name: Zuber
- first_name: Andrew C.
  full_name: Liu, Andrew C.
  last_name: Liu
- first_name: Peter B.
  full_name: Becker, Peter B.
  last_name: Becker
- first_name: Beat
  full_name: Fierz, Beat
  last_name: Fierz
- first_name: Carrie L.
  full_name: Partch, Carrie L.
  last_name: Partch
- first_name: Jerome S.
  full_name: Menet, Jerome S.
  last_name: Menet
- first_name: Nicolas H.
  full_name: Thomä, Nicolas H.
  last_name: Thomä
citation:
  ama: Michael AK, Stoos L, Crosby P, et al. Cooperation between bHLH transcription
    factors and histones for DNA access. <i>Nature</i>. 2023;619(7969):385-393. doi:<a
    href="https://doi.org/10.1038/s41586-023-06282-3">10.1038/s41586-023-06282-3</a>
  apa: Michael, A. K., Stoos, L., Crosby, P., Eggers, N., Nie, X. Y., Makasheva, K.,
    … Thomä, N. H. (2023). Cooperation between bHLH transcription factors and histones
    for DNA access. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-023-06282-3">https://doi.org/10.1038/s41586-023-06282-3</a>
  chicago: Michael, Alicia K., Lisa Stoos, Priya Crosby, Nikolas Eggers, Xinyu Y.
    Nie, Kristina Makasheva, Martina Minnich, et al. “Cooperation between BHLH Transcription
    Factors and Histones for DNA Access.” <i>Nature</i>. Springer Nature, 2023. <a
    href="https://doi.org/10.1038/s41586-023-06282-3">https://doi.org/10.1038/s41586-023-06282-3</a>.
  ieee: A. K. Michael <i>et al.</i>, “Cooperation between bHLH transcription factors
    and histones for DNA access,” <i>Nature</i>, vol. 619, no. 7969. Springer Nature,
    pp. 385–393, 2023.
  ista: Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy
    KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty
    D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schübeler D, Zuber J, Liu AC,
    Becker PB, Fierz B, Partch CL, Menet JS, Thomä NH. 2023. Cooperation between bHLH
    transcription factors and histones for DNA access. Nature. 619(7969), 385–393.
  mla: Michael, Alicia K., et al. “Cooperation between BHLH Transcription Factors
    and Histones for DNA Access.” <i>Nature</i>, vol. 619, no. 7969, Springer Nature,
    2023, pp. 385–93, doi:<a href="https://doi.org/10.1038/s41586-023-06282-3">10.1038/s41586-023-06282-3</a>.
  short: A.K. Michael, L. Stoos, P. Crosby, N. Eggers, X.Y. Nie, K. Makasheva, M.
    Minnich, K.L. Healy, J. Weiss, G. Kempf, S. Cavadini, L. Kater, J. Seebacher,
    L. Vecchia, D. Chakraborty, L. Isbel, R.S. Grand, F. Andersch, J.L. Fribourgh,
    D. Schübeler, J. Zuber, A.C. Liu, P.B. Becker, B. Fierz, C.L. Partch, J.S. Menet,
    N.H. Thomä, Nature 619 (2023) 385–393.
date_created: 2024-03-21T07:52:44Z
date_published: 2023-07-05T00:00:00Z
date_updated: 2024-03-25T12:42:29Z
day: '05'
doi: 10.1038/s41586-023-06282-3
extern: '1'
fulldoi: https://doi.org/10.1038/s41586-023-06282-3
intvolume: '       619'
issue: '7969'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41586-023-06282-3
month: '07'
oa: 1
oa_version: Published Version
page: 385-393
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cooperation between bHLH transcription factors and histones for DNA access
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 619
year: '2023'
...
---
_id: '15149'
abstract:
- lang: eng
  text: The genomic binding sites of the transcription factor (TF) and tumor suppressor
    p53 are unusually diverse with regard to their chromatin features, including histone
    modifications, raising the possibility that the local chromatin environment can
    contextualize p53 regulation. Here, we show that epigenetic characteristics of
    closed chromatin, such as DNA methylation, do not influence the binding of p53
    across the genome. Instead, the ability of p53 to open chromatin and activate
    its target genes is locally restricted by its cofactor Trim24. Trim24 binds to
    both p53 and unmethylated histone 3 lysine 4 (H3K4), thereby preferentially localizing
    to those p53 sites that reside in closed chromatin, whereas it is deterred from
    accessible chromatin by H3K4 methylation. The presence of Trim24 increases cell
    viability upon stress and enables p53 to affect gene expression as a function
    of the local chromatin state. These findings link H3K4 methylation to p53 function
    and illustrate how specificity in chromatin can be achieved, not by TF-intrinsic
    sensitivity to histone modifications, but by employing chromatin-sensitive cofactors
    that locally modulate TF function.
article_processing_charge: No
article_type: original
author:
- first_name: Luke
  full_name: Isbel, Luke
  last_name: Isbel
- first_name: Murat
  full_name: Iskar, Murat
  last_name: Iskar
- first_name: Sevi
  full_name: Durdu, Sevi
  last_name: Durdu
- first_name: Joscha
  full_name: Weiss, Joscha
  last_name: Weiss
- first_name: Ralph S.
  full_name: Grand, Ralph S.
  last_name: Grand
- first_name: Eric
  full_name: Hietter-Pfeiffer, Eric
  last_name: Hietter-Pfeiffer
- first_name: Zuzanna
  full_name: Kozicka, Zuzanna
  last_name: Kozicka
- first_name: Alicia
  full_name: Michael, Alicia
  id: 6437c950-2a03-11ee-914d-d6476dd7b75c
  last_name: Michael
  orcid: 0000-0002-6080-839X
- first_name: Lukas
  full_name: Burger, Lukas
  last_name: Burger
- first_name: Nicolas H.
  full_name: Thomä, Nicolas H.
  last_name: Thomä
- first_name: Dirk
  full_name: Schübeler, Dirk
  last_name: Schübeler
citation:
  ama: Isbel L, Iskar M, Durdu S, et al. Readout of histone methylation by Trim24
    locally restricts chromatin opening by p53. <i>Nature Structural &#38; Molecular
    Biology</i>. 2023;30(7):948-957. doi:<a href="https://doi.org/10.1038/s41594-023-01021-8">10.1038/s41594-023-01021-8</a>
  apa: Isbel, L., Iskar, M., Durdu, S., Weiss, J., Grand, R. S., Hietter-Pfeiffer,
    E., … Schübeler, D. (2023). Readout of histone methylation by Trim24 locally restricts
    chromatin opening by p53. <i>Nature Structural &#38; Molecular Biology</i>. Springer
    Nature. <a href="https://doi.org/10.1038/s41594-023-01021-8">https://doi.org/10.1038/s41594-023-01021-8</a>
  chicago: Isbel, Luke, Murat Iskar, Sevi Durdu, Joscha Weiss, Ralph S. Grand, Eric
    Hietter-Pfeiffer, Zuzanna Kozicka, et al. “Readout of Histone Methylation by Trim24
    Locally Restricts Chromatin Opening by P53.” <i>Nature Structural &#38; Molecular
    Biology</i>. Springer Nature, 2023. <a href="https://doi.org/10.1038/s41594-023-01021-8">https://doi.org/10.1038/s41594-023-01021-8</a>.
  ieee: L. Isbel <i>et al.</i>, “Readout of histone methylation by Trim24 locally
    restricts chromatin opening by p53,” <i>Nature Structural &#38; Molecular Biology</i>,
    vol. 30, no. 7. Springer Nature, pp. 948–957, 2023.
  ista: Isbel L, Iskar M, Durdu S, Weiss J, Grand RS, Hietter-Pfeiffer E, Kozicka
    Z, Michael AK, Burger L, Thomä NH, Schübeler D. 2023. Readout of histone methylation
    by Trim24 locally restricts chromatin opening by p53. Nature Structural &#38;
    Molecular Biology. 30(7), 948–957.
  mla: Isbel, Luke, et al. “Readout of Histone Methylation by Trim24 Locally Restricts
    Chromatin Opening by P53.” <i>Nature Structural &#38; Molecular Biology</i>, vol.
    30, no. 7, Springer Nature, 2023, pp. 948–57, doi:<a href="https://doi.org/10.1038/s41594-023-01021-8">10.1038/s41594-023-01021-8</a>.
  short: L. Isbel, M. Iskar, S. Durdu, J. Weiss, R.S. Grand, E. Hietter-Pfeiffer,
    Z. Kozicka, A.K. Michael, L. Burger, N.H. Thomä, D. Schübeler, Nature Structural
    &#38; Molecular Biology 30 (2023) 948–957.
date_created: 2024-03-21T07:53:24Z
date_published: 2023-06-29T00:00:00Z
date_updated: 2024-03-25T12:37:20Z
day: '29'
doi: 10.1038/s41594-023-01021-8
extern: '1'
external_id:
  pmid:
  - '37386214'
fulldoi: https://doi.org/10.1038/s41594-023-01021-8
intvolume: '        30'
issue: '7'
keyword:
- Molecular Biology
- Structural Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41594-023-01021-8
month: '06'
oa: 1
oa_version: Published Version
page: 948-957
pmid: 1
publication: Nature Structural & Molecular Biology
publication_identifier:
  eissn:
  - 1545-9985
  issn:
  - 1545-9993
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Readout of histone methylation by Trim24 locally restricts chromatin opening
  by p53
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2023'
...
---
_id: '15173'
abstract:
- lang: eng
  text: 'We show that the number of linear spaces on a set of n points and the number
    of rank-3 matroids on a ground set of size n are both of the form (cn+o(n))n2/6,
    where c=e3√/2−3(1+3–√)/2. This is the final piece of the puzzle for enumerating
    fixed-rank matroids at this level of accuracy: the numbers of rank-1 and rank-2
    matroids on a ground set of size n have exact representations in terms of well-known
    combinatorial functions, and it was recently proved by van der Hofstad, Pendavingh,
    and van der Pol that for constant r≥4 there are (e1−rn+o(n))nr−1/r! rank-r matroids
    on a ground set of size n. In our proof, we introduce a new approach for bounding
    the number of clique decompositions of a complete graph, using quasirandomness
    instead of the so-called entropy method that is common in this area.'
acknowledgement: "Sah and Sawhney were supported by NSF Graduate Research Fellowship
  Program DGE-1745302. Sah was supported by the PD Soros Fellowship.\r\nWe thank Michael
  Simkin for helpful comments on the manuscript. We thank Zach Hunter for\r\nseveral
  corrections."
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Matthew Alan
  full_name: Kwan, Matthew Alan
  id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
  last_name: Kwan
  orcid: 0000-0002-4003-7567
- first_name: Ashwin
  full_name: Sah, Ashwin
  last_name: Sah
- first_name: Mehtaab
  full_name: Sawhney, Mehtaab
  last_name: Sawhney
citation:
  ama: Kwan MA, Sah A, Sawhney M. Enumerating matroids and linear spaces. <i>Comptes
    Rendus Mathematique</i>. 2023;361(G2):565-575. doi:<a href="https://doi.org/10.5802/crmath.423">10.5802/crmath.423</a>
  apa: Kwan, M. A., Sah, A., &#38; Sawhney, M. (2023). Enumerating matroids and linear
    spaces. <i>Comptes Rendus Mathematique</i>. Academie des Sciences. <a href="https://doi.org/10.5802/crmath.423">https://doi.org/10.5802/crmath.423</a>
  chicago: Kwan, Matthew Alan, Ashwin Sah, and Mehtaab Sawhney. “Enumerating Matroids
    and Linear Spaces.” <i>Comptes Rendus Mathematique</i>. Academie des Sciences,
    2023. <a href="https://doi.org/10.5802/crmath.423">https://doi.org/10.5802/crmath.423</a>.
  ieee: M. A. Kwan, A. Sah, and M. Sawhney, “Enumerating matroids and linear spaces,”
    <i>Comptes Rendus Mathematique</i>, vol. 361, no. G2. Academie des Sciences, pp.
    565–575, 2023.
  ista: Kwan MA, Sah A, Sawhney M. 2023. Enumerating matroids and linear spaces. Comptes
    Rendus Mathematique. 361(G2), 565–575.
  mla: Kwan, Matthew Alan, et al. “Enumerating Matroids and Linear Spaces.” <i>Comptes
    Rendus Mathematique</i>, vol. 361, no. G2, Academie des Sciences, 2023, pp. 565–75,
    doi:<a href="https://doi.org/10.5802/crmath.423">10.5802/crmath.423</a>.
  short: M.A. Kwan, A. Sah, M. Sawhney, Comptes Rendus Mathematique 361 (2023) 565–575.
date_created: 2024-03-24T23:01:00Z
date_published: 2023-02-01T00:00:00Z
date_updated: 2025-09-09T14:26:32Z
day: '01'
ddc:
- '510'
department:
- _id: MaKw
doi: 10.5802/crmath.423
external_id:
  arxiv:
  - '2112.03788'
  isi:
  - '001167671400009'
file:
- access_level: open_access
  checksum: d1d0e0a854a79ae95fb66d75d9117a68
  content_type: application/pdf
  creator: dernst
  date_created: 2024-03-25T07:21:52Z
  date_updated: 2024-03-25T07:21:52Z
  file_id: '15174'
  file_name: 2023_ComptesRendusMath_Kwan.pdf
  file_size: 598097
  relation: main_file
  success: 1
file_date_updated: 2024-03-25T07:21:52Z
fulldoi: https://doi.org/10.5802/crmath.423
has_accepted_license: '1'
intvolume: '       361'
isi: 1
issue: G2
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 565-575
publication: Comptes Rendus Mathematique
publication_identifier:
  eissn:
  - 1778-3569
  issn:
  - 1631-073X
publication_status: published
publisher: Academie des Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Enumerating matroids and linear spaces
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 361
year: '2023'
...
---
_id: '15190'
abstract:
- lang: eng
  text: We report on IXPE, NICER, and XMM–Newton observations of the magnetar 1E 2259+586.
    We find that the source is significantly polarized at about or above 20  per cent
    for all phases except for the secondary peak where it is more weakly polarized.
    The polarization degree is strongest during the primary minimum which is also
    the phase where an absorption feature has been identified previously. The polarization
    angle of the photons are consistent with a rotating vector model with a mode switch
    between the primary minimum and the rest of the rotation of the neutron star.
    We propose a scenario in which the emission at the source is weakly polarized
    (as in a condensed surface) and, as the radiation passes through a plasma arch,
    resonant cyclotron scattering off of protons produces the observed polarized radiation.
    This confirms the magnetar nature of the source with a surface field greater than
    about 1015 G.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: Roberto
  full_name: Taverna, Roberto
  last_name: Taverna
- first_name: Roberto
  full_name: Turolla, Roberto
  last_name: Turolla
- first_name: Gian Luca
  full_name: Israel, Gian Luca
  last_name: Israel
- first_name: Mason
  full_name: Ng, Mason
  last_name: Ng
- first_name: Demet
  full_name: Kırmızıbayrak, Demet
  last_name: Kırmızıbayrak
- first_name: Denis
  full_name: González-Caniulef, Denis
  last_name: González-Caniulef
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Silvia
  full_name: Zane, Silvia
  last_name: Zane
- first_name: Steven R
  full_name: Ehlert, Steven R
  last_name: Ehlert
- first_name: Michela
  full_name: Negro, Michela
  last_name: Negro
- first_name: Iván
  full_name: Agudo, Iván
  last_name: Agudo
- first_name: Lucio Angelo
  full_name: Antonelli, Lucio Angelo
  last_name: Antonelli
- first_name: Matteo
  full_name: Bachetti, Matteo
  last_name: Bachetti
- first_name: Luca
  full_name: Baldini, Luca
  last_name: Baldini
- first_name: Wayne H
  full_name: Baumgartner, Wayne H
  last_name: Baumgartner
- first_name: Ronaldo
  full_name: Bellazzini, Ronaldo
  last_name: Bellazzini
- first_name: Stefano
  full_name: Bianchi, Stefano
  last_name: Bianchi
- first_name: Stephen D
  full_name: Bongiorno, Stephen D
  last_name: Bongiorno
- first_name: Raffaella
  full_name: Bonino, Raffaella
  last_name: Bonino
- first_name: Alessandro
  full_name: Brez, Alessandro
  last_name: Brez
- first_name: Niccolò
  full_name: Bucciantini, Niccolò
  last_name: Bucciantini
- first_name: Fiamma
  full_name: Capitanio, Fiamma
  last_name: Capitanio
- first_name: Simone
  full_name: Castellano, Simone
  last_name: Castellano
- first_name: Elisabetta
  full_name: Cavazzuti, Elisabetta
  last_name: Cavazzuti
- first_name: Chien-Ting
  full_name: Chen, Chien-Ting
  last_name: Chen
- first_name: Stefano
  full_name: Ciprini, Stefano
  last_name: Ciprini
- first_name: Enrico
  full_name: Costa, Enrico
  last_name: Costa
- first_name: Alessandra
  full_name: De Rosa, Alessandra
  last_name: De Rosa
- first_name: Ettore
  full_name: Del Monte, Ettore
  last_name: Del Monte
- first_name: Laura
  full_name: Di Gesu, Laura
  last_name: Di Gesu
- first_name: Niccolò
  full_name: Di Lalla, Niccolò
  last_name: Di Lalla
- first_name: Alessandro
  full_name: Di Marco, Alessandro
  last_name: Di Marco
- first_name: Immacolata
  full_name: Donnarumma, Immacolata
  last_name: Donnarumma
- first_name: Victor
  full_name: Doroshenko, Victor
  last_name: Doroshenko
- first_name: Michal
  full_name: Dovčiak, Michal
  last_name: Dovčiak
- first_name: Teruaki
  full_name: Enoto, Teruaki
  last_name: Enoto
- first_name: Yuri
  full_name: Evangelista, Yuri
  last_name: Evangelista
- first_name: Sergio
  full_name: Fabiani, Sergio
  last_name: Fabiani
- first_name: Riccardo
  full_name: Ferrazzoli, Riccardo
  last_name: Ferrazzoli
- first_name: Javier A
  full_name: Garcia, Javier A
  last_name: Garcia
- first_name: Shuichi
  full_name: Gunji, Shuichi
  last_name: Gunji
- first_name: Kiyoshi
  full_name: Hayashida, Kiyoshi
  last_name: Hayashida
- first_name: Wataru
  full_name: Iwakiri, Wataru
  last_name: Iwakiri
- first_name: Svetlana G
  full_name: Jorstad, Svetlana G
  last_name: Jorstad
- first_name: Philip
  full_name: Kaaret, Philip
  last_name: Kaaret
- first_name: Vladimir
  full_name: Karas, Vladimir
  last_name: Karas
- first_name: Fabian
  full_name: Kislat, Fabian
  last_name: Kislat
- first_name: Takao
  full_name: Kitaguchi, Takao
  last_name: Kitaguchi
- first_name: Jeffery J
  full_name: Kolodziejczak, Jeffery J
  last_name: Kolodziejczak
- first_name: Henric
  full_name: Krawczynski, Henric
  last_name: Krawczynski
- first_name: Fabio La
  full_name: Monaca, Fabio La
  last_name: Monaca
- first_name: Luca
  full_name: Latronico, Luca
  last_name: Latronico
- first_name: Ioannis
  full_name: Liodakis, Ioannis
  last_name: Liodakis
- first_name: Simone
  full_name: Maldera, Simone
  last_name: Maldera
- first_name: Alberto
  full_name: Manfreda, Alberto
  last_name: Manfreda
- first_name: Frédéric
  full_name: Marin, Frédéric
  last_name: Marin
- first_name: Andrea
  full_name: Marinucci, Andrea
  last_name: Marinucci
- first_name: Alan P
  full_name: Marscher, Alan P
  last_name: Marscher
- first_name: Herman L
  full_name: Marshall, Herman L
  last_name: Marshall
- first_name: Francesco
  full_name: Massaro, Francesco
  last_name: Massaro
- first_name: Giorgio
  full_name: Matt, Giorgio
  last_name: Matt
- first_name: Ikuyuki
  full_name: Mitsuishi, Ikuyuki
  last_name: Mitsuishi
- first_name: Tsunefumi
  full_name: Mizuno, Tsunefumi
  last_name: Mizuno
- first_name: Fabio
  full_name: Muleri, Fabio
  last_name: Muleri
- first_name: C-Y
  full_name: Ng, C-Y
  last_name: Ng
- first_name: Stephen L
  full_name: O’Dell, Stephen L
  last_name: O’Dell
- first_name: Nicola
  full_name: Omodei, Nicola
  last_name: Omodei
- first_name: Chiara
  full_name: Oppedisano, Chiara
  last_name: Oppedisano
- first_name: Alessandro
  full_name: Papitto, Alessandro
  last_name: Papitto
- first_name: George G
  full_name: Pavlov, George G
  last_name: Pavlov
- first_name: Abel Lawrence
  full_name: Peirson, Abel Lawrence
  last_name: Peirson
- first_name: Matteo
  full_name: Perri, Matteo
  last_name: Perri
- first_name: Melissa
  full_name: Pesce-Rollins, Melissa
  last_name: Pesce-Rollins
- first_name: Pierre-Olivier
  full_name: Petrucci, Pierre-Olivier
  last_name: Petrucci
- first_name: Maura
  full_name: Pilia, Maura
  last_name: Pilia
- first_name: Andrea
  full_name: Possenti, Andrea
  last_name: Possenti
- first_name: Juri
  full_name: Poutanen, Juri
  last_name: Poutanen
- first_name: Simonetta
  full_name: Puccetti, Simonetta
  last_name: Puccetti
- first_name: Brian D
  full_name: Ramsey, Brian D
  last_name: Ramsey
- first_name: John
  full_name: Rankin, John
  last_name: Rankin
- first_name: Ajay
  full_name: Ratheesh, Ajay
  last_name: Ratheesh
- first_name: Oliver J
  full_name: Roberts, Oliver J
  last_name: Roberts
- first_name: Roger W
  full_name: Romani, Roger W
  last_name: Romani
- first_name: Carmelo
  full_name: Sgrò, Carmelo
  last_name: Sgrò
- first_name: Patrick
  full_name: Slane, Patrick
  last_name: Slane
- first_name: Paolo
  full_name: Soffitta, Paolo
  last_name: Soffitta
- first_name: Gloria
  full_name: Spandre, Gloria
  last_name: Spandre
- first_name: Douglas A
  full_name: Swartz, Douglas A
  last_name: Swartz
- first_name: Toru
  full_name: Tamagawa, Toru
  last_name: Tamagawa
- first_name: Fabrizio
  full_name: Tavecchio, Fabrizio
  last_name: Tavecchio
- first_name: Yuzuru
  full_name: Tawara, Yuzuru
  last_name: Tawara
- first_name: Allyn F
  full_name: Tennant, Allyn F
  last_name: Tennant
- first_name: Nicholas E
  full_name: Thomas, Nicholas E
  last_name: Thomas
- first_name: Francesco
  full_name: Tombesi, Francesco
  last_name: Tombesi
- first_name: Alessio
  full_name: Trois, Alessio
  last_name: Trois
- first_name: Sergey S
  full_name: Tsygankov, Sergey S
  last_name: Tsygankov
- first_name: Jacco
  full_name: Vink, Jacco
  last_name: Vink
- first_name: Martin C
  full_name: Weisskopf, Martin C
  last_name: Weisskopf
- first_name: Kinwah
  full_name: Wu, Kinwah
  last_name: Wu
- first_name: Fei
  full_name: Xie, Fei
  last_name: Xie
citation:
  ama: Heyl J, Taverna R, Turolla R, et al. The detection of polarized X-ray emission
    from the magnetar 1E 2259+586. <i>Monthly Notices of the Royal Astronomical Society</i>.
    2023;527(4):12219-12231. doi:<a href="https://doi.org/10.1093/mnras/stad3680">10.1093/mnras/stad3680</a>
  apa: Heyl, J., Taverna, R., Turolla, R., Israel, G. L., Ng, M., Kırmızıbayrak, D.,
    … Xie, F. (2023). The detection of polarized X-ray emission from the magnetar
    1E 2259+586. <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford
    University Press. <a href="https://doi.org/10.1093/mnras/stad3680">https://doi.org/10.1093/mnras/stad3680</a>
  chicago: Heyl, Jeremy, Roberto Taverna, Roberto Turolla, Gian Luca Israel, Mason
    Ng, Demet Kırmızıbayrak, Denis González-Caniulef, et al. “The Detection of Polarized
    X-Ray Emission from the Magnetar 1E 2259+586.” <i>Monthly Notices of the Royal
    Astronomical Society</i>. Oxford University Press, 2023. <a href="https://doi.org/10.1093/mnras/stad3680">https://doi.org/10.1093/mnras/stad3680</a>.
  ieee: J. Heyl <i>et al.</i>, “The detection of polarized X-ray emission from the
    magnetar 1E 2259+586,” <i>Monthly Notices of the Royal Astronomical Society</i>,
    vol. 527, no. 4. Oxford University Press, pp. 12219–12231, 2023.
  ista: Heyl J et al. 2023. The detection of polarized X-ray emission from the magnetar
    1E 2259+586. Monthly Notices of the Royal Astronomical Society. 527(4), 12219–12231.
  mla: Heyl, Jeremy, et al. “The Detection of Polarized X-Ray Emission from the Magnetar
    1E 2259+586.” <i>Monthly Notices of the Royal Astronomical Society</i>, vol. 527,
    no. 4, Oxford University Press, 2023, pp. 12219–31, doi:<a href="https://doi.org/10.1093/mnras/stad3680">10.1093/mnras/stad3680</a>.
  short: J. Heyl, R. Taverna, R. Turolla, G.L. Israel, M. Ng, D. Kırmızıbayrak, D.
    González-Caniulef, I. Caiazzo, S. Zane, S.R. Ehlert, M. Negro, I. Agudo, L.A.
    Antonelli, M. Bachetti, L. Baldini, W.H. Baumgartner, R. Bellazzini, S. Bianchi,
    S.D. Bongiorno, R. Bonino, A. Brez, N. Bucciantini, F. Capitanio, S. Castellano,
    E. Cavazzuti, C.-T. Chen, S. Ciprini, E. Costa, A. De Rosa, E. Del Monte, L. Di
    Gesu, N. Di Lalla, A. Di Marco, I. Donnarumma, V. Doroshenko, M. Dovčiak, T. Enoto,
    Y. Evangelista, S. Fabiani, R. Ferrazzoli, J.A. Garcia, S. Gunji, K. Hayashida,
    W. Iwakiri, S.G. Jorstad, P. Kaaret, V. Karas, F. Kislat, T. Kitaguchi, J.J. Kolodziejczak,
    H. Krawczynski, F.L. Monaca, L. Latronico, I. Liodakis, S. Maldera, A. Manfreda,
    F. Marin, A. Marinucci, A.P. Marscher, H.L. Marshall, F. Massaro, G. Matt, I.
    Mitsuishi, T. Mizuno, F. Muleri, C.-Y. Ng, S.L. O’Dell, N. Omodei, C. Oppedisano,
    A. Papitto, G.G. Pavlov, A.L. Peirson, M. Perri, M. Pesce-Rollins, P.-O. Petrucci,
    M. Pilia, A. Possenti, J. Poutanen, S. Puccetti, B.D. Ramsey, J. Rankin, A. Ratheesh,
    O.J. Roberts, R.W. Romani, C. Sgrò, P. Slane, P. Soffitta, G. Spandre, D.A. Swartz,
    T. Tamagawa, F. Tavecchio, Y. Tawara, A.F. Tennant, N.E. Thomas, F. Tombesi, A.
    Trois, S.S. Tsygankov, J. Vink, M.C. Weisskopf, K. Wu, F. Xie, Monthly Notices
    of the Royal Astronomical Society 527 (2023) 12219–12231.
date_created: 2024-03-26T09:44:24Z
date_published: 2023-12-01T00:00:00Z
date_updated: 2024-04-02T06:51:04Z
day: '01'
doi: 10.1093/mnras/stad3680
extern: '1'
external_id:
  arxiv:
  - '2311.03637'
fulldoi: https://doi.org/10.1093/mnras/stad3680
intvolume: '       527'
issue: '4'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1093/mnras/stad3680
month: '12'
oa: 1
oa_version: Published Version
page: 12219-12231
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: The detection of polarized X-ray emission from the magnetar 1E 2259+586
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 527
year: '2023'
...
---
_id: '15192'
abstract:
- lang: eng
  text: We searched the Gaia DR3 database for ultramassive white dwarfs with kinematics
    consistent with having escaped the nearby Hyades open cluster, identifying three
    such candidates. Two of these candidates have masses estimated from Gaia photometry
    of approximately 1.1 solar masses; their status as products of single-stellar
    evolution that have escaped the cluster was deemed too questionable for immediate
    follow-up analysis. The remaining candidate has an expected mass >1.3 solar masses,
    significantly reducing the probability of it being an interloper. Analysis of
    follow-up Gemini GMOS spectroscopy for this source reveals a nonmagnetized hydrogen
    atmosphere white dwarf with a mass and age consistent with having formed from
    a single star. Assuming a single-stellar-evolution formation channel, we estimate
    a 97.8% chance that the candidate is a true escapee from the Hyades. With a determined
    mass of 1.317 solar masses, this is potentially the most massive known single-evolution
    white dwarf and is by far the most massive with a strong association with an open
    cluster.
article_number: L41
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: David R.
  full_name: Miller, David R.
  last_name: Miller
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: Harvey B.
  full_name: Richer, Harvey B.
  last_name: Richer
- first_name: Kareem
  full_name: El-Badry, Kareem
  last_name: El-Badry
- first_name: Antonio C.
  full_name: Rodriguez, Antonio C.
  last_name: Rodriguez
- first_name: Zachary P.
  full_name: Vanderbosch, Zachary P.
  last_name: Vanderbosch
- first_name: Jan
  full_name: van Roestel, Jan
  last_name: van Roestel
citation:
  ama: Miller DR, Caiazzo I, Heyl J, et al. An extremely massive white dwarf escaped
    from the Hyades star cluster. <i>The Astrophysical Journal Letters</i>. 2023;956(2).
    doi:<a href="https://doi.org/10.3847/2041-8213/acffc4">10.3847/2041-8213/acffc4</a>
  apa: Miller, D. R., Caiazzo, I., Heyl, J., Richer, H. B., El-Badry, K., Rodriguez,
    A. C., … van Roestel, J. (2023). An extremely massive white dwarf escaped from
    the Hyades star cluster. <i>The Astrophysical Journal Letters</i>. American Astronomical
    Society. <a href="https://doi.org/10.3847/2041-8213/acffc4">https://doi.org/10.3847/2041-8213/acffc4</a>
  chicago: Miller, David R., Ilaria Caiazzo, Jeremy Heyl, Harvey B. Richer, Kareem
    El-Badry, Antonio C. Rodriguez, Zachary P. Vanderbosch, and Jan van Roestel. “An
    Extremely Massive White Dwarf Escaped from the Hyades Star Cluster.” <i>The Astrophysical
    Journal Letters</i>. American Astronomical Society, 2023. <a href="https://doi.org/10.3847/2041-8213/acffc4">https://doi.org/10.3847/2041-8213/acffc4</a>.
  ieee: D. R. Miller <i>et al.</i>, “An extremely massive white dwarf escaped from
    the Hyades star cluster,” <i>The Astrophysical Journal Letters</i>, vol. 956,
    no. 2. American Astronomical Society, 2023.
  ista: Miller DR, Caiazzo I, Heyl J, Richer HB, El-Badry K, Rodriguez AC, Vanderbosch
    ZP, van Roestel J. 2023. An extremely massive white dwarf escaped from the Hyades
    star cluster. The Astrophysical Journal Letters. 956(2), L41.
  mla: Miller, David R., et al. “An Extremely Massive White Dwarf Escaped from the
    Hyades Star Cluster.” <i>The Astrophysical Journal Letters</i>, vol. 956, no.
    2, L41, American Astronomical Society, 2023, doi:<a href="https://doi.org/10.3847/2041-8213/acffc4">10.3847/2041-8213/acffc4</a>.
  short: D.R. Miller, I. Caiazzo, J. Heyl, H.B. Richer, K. El-Badry, A.C. Rodriguez,
    Z.P. Vanderbosch, J. van Roestel, The Astrophysical Journal Letters 956 (2023).
date_created: 2024-03-26T09:45:38Z
date_published: 2023-10-19T00:00:00Z
date_updated: 2024-04-02T06:56:01Z
day: '19'
doi: 10.3847/2041-8213/acffc4
extern: '1'
external_id:
  arxiv:
  - '2310.03204'
fulldoi: https://doi.org/10.3847/2041-8213/acffc4
intvolume: '       956'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.3847/2041-8213/acffc4
month: '10'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal Letters
publication_identifier:
  eissn:
  - 2041-8213
  issn:
  - 2041-8205
publication_status: published
publisher: American Astronomical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: An extremely massive white dwarf escaped from the Hyades star cluster
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 956
year: '2023'
...
---
_id: '15193'
abstract:
- lang: eng
  text: We report on Imaging X-ray polarimetry explorer (IXPE) observations of the
    Be-transient X-ray pulsar LS V +44 17/RX J0440.9+4431 made at two luminosity levels
    during the giant outburst in January–February 2023. Considering the observed spectral
    variability and changes in the pulse profiles, the source was likely caught in
    supercritical and subcritical states with significantly different emission-region
    geometry, associated with the presence of accretion columns and hot spots, respectively.
    We focus here on the pulse-phase-resolved polarimetric analysis and find that
    the observed dependencies of the polarization degree and polarization angle (PA)
    on the pulse phase are indeed drastically different for the two observations.
    The observed differences, if interpreted within the framework of the rotating
    vector model (RVM), imply dramatic variations in the spin axis inclination, the
    position angle, and the magnetic colatitude by tens of degrees within the space
    of just a few days. We suggest that the apparent changes in the observed PA phase
    dependence are predominantly related to the presence of an unpulsed polarized
    component in addition to the polarized radiation associated with the pulsar itself.
    We then show that the observed PA phase dependence in both observations can be
    explained with a single set of RVM parameters defining the pulsar’s geometry.
    We also suggest that the additional polarized component is likely produced by
    scattering of the pulsar radiation in the equatorial disk wind.
article_number: A57
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Victor
  full_name: Doroshenko, Victor
  last_name: Doroshenko
- first_name: Juri
  full_name: Poutanen, Juri
  last_name: Poutanen
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: Sergey S.
  full_name: Tsygankov, Sergey S.
  last_name: Tsygankov
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Roberto
  full_name: Turolla, Roberto
  last_name: Turolla
- first_name: Alexandra
  full_name: Veledina, Alexandra
  last_name: Veledina
- first_name: Martin C.
  full_name: Weisskopf, Martin C.
  last_name: Weisskopf
- first_name: Sofia V.
  full_name: Forsblom, Sofia V.
  last_name: Forsblom
- first_name: Denis
  full_name: González-Caniulef, Denis
  last_name: González-Caniulef
- first_name: Vladislav
  full_name: Loktev, Vladislav
  last_name: Loktev
- first_name: Christian
  full_name: Malacaria, Christian
  last_name: Malacaria
- first_name: Alexander A.
  full_name: Mushtukov, Alexander A.
  last_name: Mushtukov
- first_name: Valery F.
  full_name: Suleimanov, Valery F.
  last_name: Suleimanov
- first_name: Alexander A.
  full_name: Lutovinov, Alexander A.
  last_name: Lutovinov
- first_name: Ilya A.
  full_name: Mereminskiy, Ilya A.
  last_name: Mereminskiy
- first_name: Sergey V.
  full_name: Molkov, Sergey V.
  last_name: Molkov
- first_name: Alexander
  full_name: Salganik, Alexander
  last_name: Salganik
- first_name: Andrea
  full_name: Santangelo, Andrea
  last_name: Santangelo
- first_name: Andrei V.
  full_name: Berdyugin, Andrei V.
  last_name: Berdyugin
- first_name: Vadim
  full_name: Kravtsov, Vadim
  last_name: Kravtsov
- first_name: Anagha P.
  full_name: Nitindala, Anagha P.
  last_name: Nitindala
- first_name: Iván
  full_name: Agudo, Iván
  last_name: Agudo
- first_name: Lucio A.
  full_name: Antonelli, Lucio A.
  last_name: Antonelli
- first_name: Matteo
  full_name: Bachetti, Matteo
  last_name: Bachetti
- first_name: Luca
  full_name: Baldini, Luca
  last_name: Baldini
- first_name: Wayne H.
  full_name: Baumgartner, Wayne H.
  last_name: Baumgartner
- first_name: Ronaldo
  full_name: Bellazzini, Ronaldo
  last_name: Bellazzini
- first_name: Stefano
  full_name: Bianchi, Stefano
  last_name: Bianchi
- first_name: Stephen D.
  full_name: Bongiorno, Stephen D.
  last_name: Bongiorno
- first_name: Raffaella
  full_name: Bonino, Raffaella
  last_name: Bonino
- first_name: Alessandro
  full_name: Brez, Alessandro
  last_name: Brez
- first_name: Niccolò
  full_name: Bucciantini, Niccolò
  last_name: Bucciantini
- first_name: Fiamma
  full_name: Capitanio, Fiamma
  last_name: Capitanio
- first_name: Simone
  full_name: Castellano, Simone
  last_name: Castellano
- first_name: Elisabetta
  full_name: Cavazzuti, Elisabetta
  last_name: Cavazzuti
- first_name: Chien-Ting
  full_name: Chen, Chien-Ting
  last_name: Chen
- first_name: Stefano
  full_name: Ciprini, Stefano
  last_name: Ciprini
- first_name: Enrico
  full_name: Costa, Enrico
  last_name: Costa
- first_name: Alessandra
  full_name: De Rosa, Alessandra
  last_name: De Rosa
- first_name: Ettore
  full_name: Del Monte, Ettore
  last_name: Del Monte
- first_name: Laura
  full_name: Di Gesu, Laura
  last_name: Di Gesu
- first_name: Niccolò
  full_name: Di Lalla, Niccolò
  last_name: Di Lalla
- first_name: Alessandro
  full_name: Di Marco, Alessandro
  last_name: Di Marco
- first_name: Immacolata
  full_name: Donnarumma, Immacolata
  last_name: Donnarumma
- first_name: Michal
  full_name: Dovčiak, Michal
  last_name: Dovčiak
- first_name: Steven R.
  full_name: Ehlert, Steven R.
  last_name: Ehlert
- first_name: Teruaki
  full_name: Enoto, Teruaki
  last_name: Enoto
- first_name: Yuri
  full_name: Evangelista, Yuri
  last_name: Evangelista
- first_name: Sergio
  full_name: Fabiani, Sergio
  last_name: Fabiani
- first_name: Riccardo
  full_name: Ferrazzoli, Riccardo
  last_name: Ferrazzoli
- first_name: Javier A.
  full_name: García, Javier A.
  last_name: García
- first_name: Shuichi
  full_name: Gunji, Shuichi
  last_name: Gunji
- first_name: Kiyoshi
  full_name: Hayashida, Kiyoshi
  last_name: Hayashida
- first_name: Wataru
  full_name: Iwakiri, Wataru
  last_name: Iwakiri
- first_name: Svetlana G.
  full_name: Jorstad, Svetlana G.
  last_name: Jorstad
- first_name: Philip
  full_name: Kaaret, Philip
  last_name: Kaaret
- first_name: Vladimir
  full_name: Karas, Vladimir
  last_name: Karas
- first_name: Fabian
  full_name: Kislat, Fabian
  last_name: Kislat
- first_name: Takao
  full_name: Kitaguchi, Takao
  last_name: Kitaguchi
- first_name: Jeffery J.
  full_name: Kolodziejczak, Jeffery J.
  last_name: Kolodziejczak
- first_name: Henric
  full_name: Krawczynski, Henric
  last_name: Krawczynski
- first_name: Fabio
  full_name: La Monaca, Fabio
  last_name: La Monaca
- first_name: Luca
  full_name: Latronico, Luca
  last_name: Latronico
- first_name: Ioannis
  full_name: Liodakis, Ioannis
  last_name: Liodakis
- first_name: Simone
  full_name: Maldera, Simone
  last_name: Maldera
- first_name: Alberto
  full_name: Manfreda, Alberto
  last_name: Manfreda
- first_name: Frédéric
  full_name: Marin, Frédéric
  last_name: Marin
- first_name: Andrea
  full_name: Marinucci, Andrea
  last_name: Marinucci
- first_name: Alan P.
  full_name: Marscher, Alan P.
  last_name: Marscher
- first_name: Herman L.
  full_name: Marshall, Herman L.
  last_name: Marshall
- first_name: Francesco
  full_name: Massaro, Francesco
  last_name: Massaro
- first_name: Giorgio
  full_name: Matt, Giorgio
  last_name: Matt
- first_name: Ikuyuki
  full_name: Mitsuishi, Ikuyuki
  last_name: Mitsuishi
- first_name: Tsunefumi
  full_name: Mizuno, Tsunefumi
  last_name: Mizuno
- first_name: Fabio
  full_name: Muleri, Fabio
  last_name: Muleri
- first_name: Michela
  full_name: Negro, Michela
  last_name: Negro
- first_name: Chi-Yung
  full_name: Ng, Chi-Yung
  last_name: Ng
- first_name: Stephen L.
  full_name: O’Dell, Stephen L.
  last_name: O’Dell
- first_name: Nicola
  full_name: Omodei, Nicola
  last_name: Omodei
- first_name: Chiara
  full_name: Oppedisano, Chiara
  last_name: Oppedisano
- first_name: Alessandro
  full_name: Papitto, Alessandro
  last_name: Papitto
- first_name: George G.
  full_name: Pavlov, George G.
  last_name: Pavlov
- first_name: Abel L.
  full_name: Peirson, Abel L.
  last_name: Peirson
- first_name: Matteo
  full_name: Perri, Matteo
  last_name: Perri
- first_name: Melissa
  full_name: Pesce-Rollins, Melissa
  last_name: Pesce-Rollins
- first_name: Pierre-Olivier
  full_name: Petrucci, Pierre-Olivier
  last_name: Petrucci
- first_name: Maura
  full_name: Pilia, Maura
  last_name: Pilia
- first_name: Andrea
  full_name: Possenti, Andrea
  last_name: Possenti
- first_name: Simonetta
  full_name: Puccetti, Simonetta
  last_name: Puccetti
- first_name: Brian D.
  full_name: Ramsey, Brian D.
  last_name: Ramsey
- first_name: John
  full_name: Rankin, John
  last_name: Rankin
- first_name: Ajay
  full_name: Ratheesh, Ajay
  last_name: Ratheesh
- first_name: Oliver J.
  full_name: Roberts, Oliver J.
  last_name: Roberts
- first_name: Roger W.
  full_name: Romani, Roger W.
  last_name: Romani
- first_name: Carmelo
  full_name: Sgrò, Carmelo
  last_name: Sgrò
- first_name: Patrick
  full_name: Slane, Patrick
  last_name: Slane
- first_name: Paolo
  full_name: Soffitta, Paolo
  last_name: Soffitta
- first_name: Gloria
  full_name: Spandre, Gloria
  last_name: Spandre
- first_name: Douglas A.
  full_name: Swartz, Douglas A.
  last_name: Swartz
- first_name: Toru
  full_name: Tamagawa, Toru
  last_name: Tamagawa
- first_name: Fabrizio
  full_name: Tavecchio, Fabrizio
  last_name: Tavecchio
- first_name: Roberto
  full_name: Taverna, Roberto
  last_name: Taverna
- first_name: Yuzuru
  full_name: Tawara, Yuzuru
  last_name: Tawara
- first_name: Allyn F.
  full_name: Tennant, Allyn F.
  last_name: Tennant
- first_name: Nicholas E.
  full_name: Thomas, Nicholas E.
  last_name: Thomas
- first_name: Francesco
  full_name: Tombesi, Francesco
  last_name: Tombesi
- first_name: Alessio
  full_name: Trois, Alessio
  last_name: Trois
- first_name: Jacco
  full_name: Vink, Jacco
  last_name: Vink
- first_name: Kinwah
  full_name: Wu, Kinwah
  last_name: Wu
- first_name: Fei
  full_name: Xie, Fei
  last_name: Xie
- first_name: Silvia
  full_name: Zane, Silvia
  last_name: Zane
citation:
  ama: Doroshenko V, Poutanen J, Heyl J, et al. Complex variations in X-ray polarization
    in the X-ray pulsar LS V +44 17/RX J0440.9+4431. <i>Astronomy &#38; Astrophysics</i>.
    2023;677. doi:<a href="https://doi.org/10.1051/0004-6361/202347088">10.1051/0004-6361/202347088</a>
  apa: Doroshenko, V., Poutanen, J., Heyl, J., Tsygankov, S. S., Caiazzo, I., Turolla,
    R., … Zane, S. (2023). Complex variations in X-ray polarization in the X-ray pulsar
    LS V +44 17/RX J0440.9+4431. <i>Astronomy &#38; Astrophysics</i>. EDP Sciences.
    <a href="https://doi.org/10.1051/0004-6361/202347088">https://doi.org/10.1051/0004-6361/202347088</a>
  chicago: Doroshenko, Victor, Juri Poutanen, Jeremy Heyl, Sergey S. Tsygankov, Ilaria
    Caiazzo, Roberto Turolla, Alexandra Veledina, et al. “Complex Variations in X-Ray
    Polarization in the X-Ray Pulsar LS V +44 17/RX J0440.9+4431.” <i>Astronomy &#38;
    Astrophysics</i>. EDP Sciences, 2023. <a href="https://doi.org/10.1051/0004-6361/202347088">https://doi.org/10.1051/0004-6361/202347088</a>.
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date_created: 2024-03-26T09:46:01Z
date_published: 2023-09-04T00:00:00Z
date_updated: 2024-04-02T06:57:11Z
day: '04'
doi: 10.1051/0004-6361/202347088
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external_id:
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fulldoi: https://doi.org/10.1051/0004-6361/202347088
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publisher: EDP Sciences
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title: Complex variations in X-ray polarization in the X-ray pulsar LS V +44 17/RX
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