---
_id: '11351'
abstract:
- lang: eng
  text: 'One hallmark of plant cells is their cell wall. They protect cells against
    the environment and high turgor and mediate morphogenesis through the dynamics
    of their mechanical and chemical properties. The walls are a complex polysaccharidic
    structure. Although their biochemical composition is well known, how the different
    components organize in the volume of the cell wall and interact with each other
    is not well understood and yet is key to the wall’s mechanical properties. To
    investigate the ultrastructure of the plant cell wall, we imaged the walls of
    onion (Allium cepa) bulbs in a near-native state via cryo-focused ion beam milling
    (cryo-FIB milling) and cryo-electron tomography (cryo-ET). This allowed the high-resolution
    visualization of cellulose fibers in situ. We reveal the coexistence of dense
    fiber fields bathed in a reticulated matrix we termed “meshing,” which is more
    abundant at the inner surface of the cell wall. The fibers adopted a regular bimodal
    angular distribution at all depths in the cell wall and bundled according to their
    orientation, creating layers within the cell wall. Concomitantly, employing homogalacturonan
    (HG)-specific enzymatic digestion, we observed changes in the meshing, suggesting
    that it is—at least in part—composed of HG pectins. We propose the following model
    for the construction of the abaxial epidermal primary cell wall: the cell deposits
    successive layers of cellulose fibers at −45° and +45° relative to the cell’s
    long axis and secretes the surrounding HG-rich meshing proximal to the plasma
    membrane, which then migrates to more distal regions of the cell wall.'
acknowledgement: This work was supported by the Howard Hughes Medical Institute (HHMI)
  and grant R35 GM122588 to G.J. and the Austrian Science Fund (FWF) P33367 to F.K.M.S.
  We thank Noé Cochetel for his guidance and great help in data analysis, discovery,
  and representation with the R software. We thank Hans-Ulrich Endress for graciously
  providing us with the purified citrus pectin and Jozef Mravec for generating and
  providing the COS488 probe. Cryo-EM work was done in the Beckman Institute Resource
  Center for Transmission Electron Microscopy at Caltech. This article is subject
  to HHMI’s Open Access to Publications policy. HHMI lab heads have previously granted
  a nonexclusive CC BY 4.0 license to the public and a sublicensable license to HHMI
  in their research articles. Pursuant to those licenses, the author accepted manuscript
  of this article can be made freely available under a CC BY 4.0 license immediately
  upon publication.
article_processing_charge: No
article_type: original
author:
- first_name: William J.
  full_name: Nicolas, William J.
  last_name: Nicolas
- first_name: Florian
  full_name: Fäßler, Florian
  id: 404F5528-F248-11E8-B48F-1D18A9856A87
  last_name: Fäßler
  orcid: 0000-0001-7149-769X
- first_name: Przemysław
  full_name: Dutka, Przemysław
  last_name: Dutka
- first_name: Florian KM
  full_name: Schur, Florian KM
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
- first_name: Grant
  full_name: Jensen, Grant
  last_name: Jensen
- first_name: Elliot
  full_name: Meyerowitz, Elliot
  last_name: Meyerowitz
citation:
  ama: Nicolas WJ, Fäßler F, Dutka P, Schur FK, Jensen G, Meyerowitz E. Cryo-electron
    tomography of the onion cell wall shows bimodally oriented cellulose fibers and
    reticulated homogalacturonan networks. <i>Current Biology</i>. 2022;32(11):P2375-2389.
    doi:<a href="https://doi.org/10.1016/j.cub.2022.04.024">10.1016/j.cub.2022.04.024</a>
  apa: Nicolas, W. J., Fäßler, F., Dutka, P., Schur, F. K., Jensen, G., &#38; Meyerowitz,
    E. (2022). Cryo-electron tomography of the onion cell wall shows bimodally oriented
    cellulose fibers and reticulated homogalacturonan networks. <i>Current Biology</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.cub.2022.04.024">https://doi.org/10.1016/j.cub.2022.04.024</a>
  chicago: Nicolas, William J., Florian Fäßler, Przemysław Dutka, Florian KM Schur,
    Grant Jensen, and Elliot Meyerowitz. “Cryo-Electron Tomography of the Onion Cell
    Wall Shows Bimodally Oriented Cellulose Fibers and Reticulated Homogalacturonan
    Networks.” <i>Current Biology</i>. Elsevier, 2022. <a href="https://doi.org/10.1016/j.cub.2022.04.024">https://doi.org/10.1016/j.cub.2022.04.024</a>.
  ieee: W. J. Nicolas, F. Fäßler, P. Dutka, F. K. Schur, G. Jensen, and E. Meyerowitz,
    “Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose
    fibers and reticulated homogalacturonan networks,” <i>Current Biology</i>, vol.
    32, no. 11. Elsevier, pp. P2375-2389, 2022.
  ista: Nicolas WJ, Fäßler F, Dutka P, Schur FK, Jensen G, Meyerowitz E. 2022. Cryo-electron
    tomography of the onion cell wall shows bimodally oriented cellulose fibers and
    reticulated homogalacturonan networks. Current Biology. 32(11), P2375-2389.
  mla: Nicolas, William J., et al. “Cryo-Electron Tomography of the Onion Cell Wall
    Shows Bimodally Oriented Cellulose Fibers and Reticulated Homogalacturonan Networks.”
    <i>Current Biology</i>, vol. 32, no. 11, Elsevier, 2022, pp. P2375-2389, doi:<a
    href="https://doi.org/10.1016/j.cub.2022.04.024">10.1016/j.cub.2022.04.024</a>.
  short: W.J. Nicolas, F. Fäßler, P. Dutka, F.K. Schur, G. Jensen, E. Meyerowitz,
    Current Biology 32 (2022) P2375-2389.
date_created: 2022-05-04T06:22:06Z
date_published: 2022-06-06T00:00:00Z
date_updated: 2025-04-15T08:25:40Z
day: '06'
ddc:
- '570'
department:
- _id: FlSc
doi: 10.1016/j.cub.2022.04.024
external_id:
  isi:
  - '000822399200019'
  pmid:
  - '35508170'
file:
- access_level: open_access
  checksum: af3f24d97c016d844df237abef987639
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-05T06:29:18Z
  date_updated: 2022-08-05T06:29:18Z
  file_id: '11730'
  file_name: 2022_CurrentBiology_Nicolas.pdf
  file_size: 12827717
  relation: main_file
  success: 1
file_date_updated: 2022-08-05T06:29:18Z
has_accepted_license: '1'
intvolume: '        32'
isi: 1
issue: '11'
keyword:
- General Agricultural and Biological Sciences
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: P2375-2389
pmid: 1
project:
- _id: 9B954C5C-BA93-11EA-9121-9846C619BF3A
  grant_number: P33367
  name: Structure and isoform diversity of the Arp2/3 complex
publication: Current Biology
publication_identifier:
  issn:
  - 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose
  fibers and reticulated homogalacturonan networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 32
year: '2022'
...
---
_id: '11353'
abstract:
- lang: eng
  text: Micro- and nanoscale optical or microwave cavities are used in a wide range
    of classical applications and quantum science experiments, ranging from precision
    measurements, laser technologies to quantum control of mechanical motion. The
    dissipative photon loss via absorption, present to some extent in any optical
    cavity, is known to introduce thermo-optical effects and thereby impose fundamental
    limits on precision measurements. Here, we theoretically and experimentally reveal
    that such dissipative photon absorption can result in quantum feedback via in-loop
    field detection of the absorbed optical field, leading to the intracavity field
    fluctuations to be squashed or antisquashed. A closed-loop dissipative quantum
    feedback to the cavity field arises. Strikingly, this modifies the optical cavity
    susceptibility in coherent response measurements (capable of both increasing or
    decreasing the bare cavity linewidth) and causes excess noise and correlations
    in incoherent interferometric optomechanical measurements using a cavity, that
    is parametrically coupled to a mechanical oscillator. We experimentally observe
    such unanticipated dissipative dynamics in optomechanical spectroscopy of sideband-cooled
    optomechanical crystal cavitiess at both cryogenic temperature (approximately
    8 K) and ambient conditions. The dissipative feedback introduces effective modifications
    to the optical cavity linewidth and the optomechanical scattering rate and gives
    rise to excess imprecision noise in the interferometric quantum measurement of
    mechanical motion. Such dissipative feedback differs fundamentally from a quantum
    nondemolition feedback, e.g., optical Kerr squeezing. The dissipative feedback
    itself always results in an antisqueezed out-of-loop optical field, while it can
    enhance the coexisting Kerr squeezing under certain conditions. Our result applies
    to cavity spectroscopy in both optical and superconducting microwave cavities,
    and equally applies to any dissipative feedback mechanism of different bandwidth
    inside the cavity. It has wide-ranging implications for future dissipation engineering,
    such as dissipation enhanced sideband cooling and Kerr squeezing, quantum frequency
    conversion, and nonreciprocity in photonic systems.
acknowledgement: "L.Q. acknowledges fruitful discussions with D. Vitali, R. Schnabel,
  P.K. Lam, A. Nunnenkamp, and D. Malz. This work is supported by the EUH2020 research
  and innovation programme under Grant No. 732894 (FET Proactive HOT), and the European
  Research Council through \r\nGrant No. 835329 (ExCOM-cCEO). This work was further
  supported by Swiss National Science Foundation under Grant Agreements No. 185870
  (Ambizione) and No. 204927. Samples were fabricated at the Center of MicroNanoTechnology
  (CMi) at EPFL and the Binnig and Rohrer Nanotechnology Center at IBM Research-Zurich."
article_number: '020309'
article_processing_charge: No
article_type: original
author:
- first_name: Liu
  full_name: Qiu, Liu
  id: 45e99c0d-1eb1-11eb-9b96-ed8ab2983cac
  last_name: Qiu
  orcid: 0000-0003-4345-4267
- first_name: Guanhao
  full_name: Huang, Guanhao
  last_name: Huang
- first_name: Itay
  full_name: Shomroni, Itay
  last_name: Shomroni
- first_name: Jiahe
  full_name: Pan, Jiahe
  last_name: Pan
- first_name: Paul
  full_name: Seidler, Paul
  last_name: Seidler
- first_name: Tobias J.
  full_name: Kippenberg, Tobias J.
  last_name: Kippenberg
citation:
  ama: Qiu L, Huang G, Shomroni I, Pan J, Seidler P, Kippenberg TJ. Dissipative quantum
    feedback in measurements using a parametrically coupled microcavity. <i>PRX Quantum</i>.
    2022;3(2). doi:<a href="https://doi.org/10.1103/PRXQuantum.3.020309">10.1103/PRXQuantum.3.020309</a>
  apa: Qiu, L., Huang, G., Shomroni, I., Pan, J., Seidler, P., &#38; Kippenberg, T.
    J. (2022). Dissipative quantum feedback in measurements using a parametrically
    coupled microcavity. <i>PRX Quantum</i>. American Physical Society. <a href="https://doi.org/10.1103/PRXQuantum.3.020309">https://doi.org/10.1103/PRXQuantum.3.020309</a>
  chicago: Qiu, Liu, Guanhao Huang, Itay Shomroni, Jiahe Pan, Paul Seidler, and Tobias
    J. Kippenberg. “Dissipative Quantum Feedback in Measurements Using a Parametrically
    Coupled Microcavity.” <i>PRX Quantum</i>. American Physical Society, 2022. <a
    href="https://doi.org/10.1103/PRXQuantum.3.020309">https://doi.org/10.1103/PRXQuantum.3.020309</a>.
  ieee: L. Qiu, G. Huang, I. Shomroni, J. Pan, P. Seidler, and T. J. Kippenberg, “Dissipative
    quantum feedback in measurements using a parametrically coupled microcavity,”
    <i>PRX Quantum</i>, vol. 3, no. 2. American Physical Society, 2022.
  ista: Qiu L, Huang G, Shomroni I, Pan J, Seidler P, Kippenberg TJ. 2022. Dissipative
    quantum feedback in measurements using a parametrically coupled microcavity. PRX
    Quantum. 3(2), 020309.
  mla: Qiu, Liu, et al. “Dissipative Quantum Feedback in Measurements Using a Parametrically
    Coupled Microcavity.” <i>PRX Quantum</i>, vol. 3, no. 2, 020309, American Physical
    Society, 2022, doi:<a href="https://doi.org/10.1103/PRXQuantum.3.020309">10.1103/PRXQuantum.3.020309</a>.
  short: L. Qiu, G. Huang, I. Shomroni, J. Pan, P. Seidler, T.J. Kippenberg, PRX Quantum
    3 (2022).
date_created: 2022-05-08T22:01:43Z
date_published: 2022-04-13T00:00:00Z
date_updated: 2026-04-02T12:30:47Z
day: '13'
ddc:
- '530'
department:
- _id: JoFi
doi: 10.1103/PRXQuantum.3.020309
ec_funded: 1
external_id:
  isi:
  - '000789316700001'
file:
- access_level: open_access
  checksum: 35ff9ddf1d54f64432e435b660edaeb6
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-09T07:10:51Z
  date_updated: 2022-05-09T07:10:51Z
  file_id: '11358'
  file_name: 2022_PRXQuantum_Qiu.pdf
  file_size: 1657177
  relation: main_file
  success: 1
file_date_updated: 2022-05-09T07:10:51Z
has_accepted_license: '1'
intvolume: '         3'
isi: 1
issue: '2'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: 257EB838-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '732894'
  name: Hybrid Optomechanical Technologies
publication: PRX Quantum
publication_identifier:
  eissn:
  - 2691-3399
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dissipative quantum feedback in measurements using a parametrically coupled
  microcavity
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 3
year: '2022'
...
---
_id: '11354'
abstract:
- lang: eng
  text: We construct a recurrent diffusion process with values in the space of probability
    measures over an arbitrary closed Riemannian manifold of dimension d≥2. The process
    is associated with the Dirichlet form defined by integration of the Wasserstein
    gradient w.r.t. the Dirichlet–Ferguson measure, and is the counterpart on multidimensional
    base spaces to the modified massive Arratia flow over the unit interval described
    in V. Konarovskyi and M.-K. von Renesse (Comm. Pure Appl. Math. 72 (2019) 764–800).
    Together with two different constructions of the process, we discuss its ergodicity,
    invariant sets, finite-dimensional approximations, and Varadhan short-time asymptotics.
acknowledgement: Research supported by the Sonderforschungsbereich 1060 and the Hausdorff
  Center for Mathematics. The author gratefully acknowledges funding of his current
  position at IST Austria by the Austrian Science Fund (FWF) grant F65 and by the
  European Research Council (ERC, Grant agreement No. 716117, awarded to Prof. Dr.
  Jan Maas).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Lorenzo
  full_name: Dello Schiavo, Lorenzo
  id: ECEBF480-9E4F-11EA-B557-B0823DDC885E
  last_name: Dello Schiavo
  orcid: 0000-0002-9881-6870
citation:
  ama: Dello Schiavo L. The Dirichlet–Ferguson diffusion on the space of probability
    measures over a closed Riemannian manifold. <i>Annals of Probability</i>. 2022;50(2):591-648.
    doi:<a href="https://doi.org/10.1214/21-AOP1541">10.1214/21-AOP1541</a>
  apa: Dello Schiavo, L. (2022). The Dirichlet–Ferguson diffusion on the space of
    probability measures over a closed Riemannian manifold. <i>Annals of Probability</i>.
    Institute of Mathematical Statistics. <a href="https://doi.org/10.1214/21-AOP1541">https://doi.org/10.1214/21-AOP1541</a>
  chicago: Dello Schiavo, Lorenzo. “The Dirichlet–Ferguson Diffusion on the Space
    of Probability Measures over a Closed Riemannian Manifold.” <i>Annals of Probability</i>.
    Institute of Mathematical Statistics, 2022. <a href="https://doi.org/10.1214/21-AOP1541">https://doi.org/10.1214/21-AOP1541</a>.
  ieee: L. Dello Schiavo, “The Dirichlet–Ferguson diffusion on the space of probability
    measures over a closed Riemannian manifold,” <i>Annals of Probability</i>, vol.
    50, no. 2. Institute of Mathematical Statistics, pp. 591–648, 2022.
  ista: Dello Schiavo L. 2022. The Dirichlet–Ferguson diffusion on the space of probability
    measures over a closed Riemannian manifold. Annals of Probability. 50(2), 591–648.
  mla: Dello Schiavo, Lorenzo. “The Dirichlet–Ferguson Diffusion on the Space of Probability
    Measures over a Closed Riemannian Manifold.” <i>Annals of Probability</i>, vol.
    50, no. 2, Institute of Mathematical Statistics, 2022, pp. 591–648, doi:<a href="https://doi.org/10.1214/21-AOP1541">10.1214/21-AOP1541</a>.
  short: L. Dello Schiavo, Annals of Probability 50 (2022) 591–648.
corr_author: '1'
date_created: 2022-05-08T22:01:44Z
date_published: 2022-03-01T00:00:00Z
date_updated: 2025-04-14T07:27:47Z
day: '01'
department:
- _id: JaMa
doi: 10.1214/21-AOP1541
ec_funded: 1
external_id:
  arxiv:
  - '1811.11598'
  isi:
  - '000773518500005'
intvolume: '        50'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.1811.11598'
month: '03'
oa: 1
oa_version: Preprint
page: 591-648
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
publication: Annals of Probability
publication_identifier:
  eissn:
  - 2168-894X
  issn:
  - 0091-1798
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Dirichlet–Ferguson diffusion on the space of probability measures over
  a closed Riemannian manifold
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 50
year: '2022'
...
---
_id: '11355'
abstract:
- lang: eng
  text: "Contract-based design is a promising methodology for taming the complexity
    of developing sophisticated systems. A formal contract distinguishes between assumptions,
    which are constraints that the designer of a component puts on the environments
    in which the component can be used safely, and guarantees, which are promises
    that the designer asks from the team that implements the component. A theory of
    formal contracts can be formalized as an interface theory, which supports the
    composition and refinement of both assumptions and guarantees.\r\nAlthough there
    is a rich landscape of contract-based design methods that address functional and
    extra-functional properties, we present the first interface theory that is designed
    for ensuring system-wide security properties. Our framework provides a refinement
    relation and a composition operation that support both incremental design and
    independent implementability. We develop our theory for both stateless and stateful
    interfaces. We illustrate the applicability of our framework with an example inspired
    from the automotive domain."
acknowledgement: This project has received funding from the European Union’s Horizon
  2020 research and innovation programme under grant agreement No 956123 and was funded
  in part by the FWF project W1255-N23 and by the ERC-2020-AdG 101020093.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Ezio
  full_name: Bartocci, Ezio
  last_name: Bartocci
- first_name: Thomas
  full_name: Ferrere, Thomas
  id: 40960E6E-F248-11E8-B48F-1D18A9856A87
  last_name: Ferrere
  orcid: 0000-0001-5199-3143
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Dejan
  full_name: Nickovic, Dejan
  id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
  last_name: Nickovic
- first_name: Ana Oliveira
  full_name: Da Costa, Ana Oliveira
  last_name: Da Costa
citation:
  ama: 'Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Da Costa AO. Information-flow
    interfaces. In: <i>Fundamental Approaches to Software Engineering</i>. Vol 13241.
    Springer Nature; 2022:3-22. doi:<a href="https://doi.org/10.1007/978-3-030-99429-7_1">10.1007/978-3-030-99429-7_1</a>'
  apa: 'Bartocci, E., Ferrere, T., Henzinger, T. A., Nickovic, D., &#38; Da Costa,
    A. O. (2022). Information-flow interfaces. In <i>Fundamental Approaches to Software
    Engineering</i> (Vol. 13241, pp. 3–22). Munich, Germany: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-99429-7_1">https://doi.org/10.1007/978-3-030-99429-7_1</a>'
  chicago: Bartocci, Ezio, Thomas Ferrere, Thomas A Henzinger, Dejan Nickovic, and
    Ana Oliveira Da Costa. “Information-Flow Interfaces.” In <i>Fundamental Approaches
    to Software Engineering</i>, 13241:3–22. Springer Nature, 2022. <a href="https://doi.org/10.1007/978-3-030-99429-7_1">https://doi.org/10.1007/978-3-030-99429-7_1</a>.
  ieee: E. Bartocci, T. Ferrere, T. A. Henzinger, D. Nickovic, and A. O. Da Costa,
    “Information-flow interfaces,” in <i>Fundamental Approaches to Software Engineering</i>,
    Munich, Germany, 2022, vol. 13241, pp. 3–22.
  ista: 'Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Da Costa AO. 2022. Information-flow
    interfaces. Fundamental Approaches to Software Engineering. FASE: Fundamental
    Approaches to Software Engineering, LNCS, vol. 13241, 3–22.'
  mla: Bartocci, Ezio, et al. “Information-Flow Interfaces.” <i>Fundamental Approaches
    to Software Engineering</i>, vol. 13241, Springer Nature, 2022, pp. 3–22, doi:<a
    href="https://doi.org/10.1007/978-3-030-99429-7_1">10.1007/978-3-030-99429-7_1</a>.
  short: E. Bartocci, T. Ferrere, T.A. Henzinger, D. Nickovic, A.O. Da Costa, in:,
    Fundamental Approaches to Software Engineering, Springer Nature, 2022, pp. 3–22.
conference:
  end_date: 2022-04-07
  location: Munich, Germany
  name: 'FASE: Fundamental Approaches to Software Engineering'
  start_date: 2022-04-02
date_created: 2022-05-08T22:01:44Z
date_published: 2022-03-29T00:00:00Z
date_updated: 2025-12-30T06:50:51Z
day: '29'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-030-99429-7_1
ec_funded: 1
external_id:
  isi:
  - '000782393600001'
file:
- access_level: open_access
  checksum: 7f6f860b20b8de2a249e9c1b4eee15cf
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-09T06:52:44Z
  date_updated: 2022-05-09T06:52:44Z
  file_id: '11357'
  file_name: 2022_LNCS_Bartocci.pdf
  file_size: 479146
  relation: main_file
  success: 1
file_date_updated: 2022-05-09T06:52:44Z
has_accepted_license: '1'
intvolume: '     13241'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 3-22
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: Fundamental Approaches to Software Engineering
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783030994280'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '17094'
    relation: extended_version
    status: public
scopus_import: '1'
status: public
title: Information-flow interfaces
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13241
year: '2022'
...
---
_id: '11356'
acknowledgement: This work was supported by the National Science Fund for Distinguished
  Young Scholars (51925101), National Key Research and Development Program of China
  (2018YFA0702100), 111 Project (B17002), and Lise Meitner Project (M2889-N).
article_processing_charge: No
article_type: letter_note
author:
- first_name: Cheng
  full_name: Chang, Cheng
  id: 9E331C2E-9F27-11E9-AE48-5033E6697425
  last_name: Chang
  orcid: 0000-0002-9515-4277
- first_name: Bingchao
  full_name: Qin, Bingchao
  last_name: Qin
- first_name: Lizhong
  full_name: Su, Lizhong
  last_name: Su
- first_name: Li Dong
  full_name: Zhao, Li Dong
  last_name: Zhao
citation:
  ama: Chang C, Qin B, Su L, Zhao LD. Distinct electron and hole transports in SnSe
    crystals. <i>Science Bulletin</i>. 2022;67(11):1105-1107. doi:<a href="https://doi.org/10.1016/j.scib.2022.04.007">10.1016/j.scib.2022.04.007</a>
  apa: Chang, C., Qin, B., Su, L., &#38; Zhao, L. D. (2022). Distinct electron and
    hole transports in SnSe crystals. <i>Science Bulletin</i>. Elsevier. <a href="https://doi.org/10.1016/j.scib.2022.04.007">https://doi.org/10.1016/j.scib.2022.04.007</a>
  chicago: Chang, Cheng, Bingchao Qin, Lizhong Su, and Li Dong Zhao. “Distinct Electron
    and Hole Transports in SnSe Crystals.” <i>Science Bulletin</i>. Elsevier, 2022.
    <a href="https://doi.org/10.1016/j.scib.2022.04.007">https://doi.org/10.1016/j.scib.2022.04.007</a>.
  ieee: C. Chang, B. Qin, L. Su, and L. D. Zhao, “Distinct electron and hole transports
    in SnSe crystals,” <i>Science Bulletin</i>, vol. 67, no. 11. Elsevier, pp. 1105–1107,
    2022.
  ista: Chang C, Qin B, Su L, Zhao LD. 2022. Distinct electron and hole transports
    in SnSe crystals. Science Bulletin. 67(11), 1105–1107.
  mla: Chang, Cheng, et al. “Distinct Electron and Hole Transports in SnSe Crystals.”
    <i>Science Bulletin</i>, vol. 67, no. 11, Elsevier, 2022, pp. 1105–07, doi:<a
    href="https://doi.org/10.1016/j.scib.2022.04.007">10.1016/j.scib.2022.04.007</a>.
  short: C. Chang, B. Qin, L. Su, L.D. Zhao, Science Bulletin 67 (2022) 1105–1107.
date_created: 2022-05-08T22:01:44Z
date_published: 2022-06-15T00:00:00Z
date_updated: 2026-06-18T10:50:26Z
day: '15'
ddc:
- '530'
department:
- _id: MaIb
doi: 10.1016/j.scib.2022.04.007
external_id:
  isi:
  - '000835291100006'
  pmid:
  - '36545972'
intvolume: '        67'
isi: 1
issue: '11'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.scib.2022.04.007
month: '06'
oa: 1
oa_version: Published Version
page: 1105-1107
pmid: 1
project:
- _id: 9B8804FC-BA93-11EA-9121-9846C619BF3A
  grant_number: M02889
  name: Bottom-up Engineering for Thermoelectric Applications
publication: Science Bulletin
publication_identifier:
  eissn:
  - 2095-9281
  issn:
  - 2095-9273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Distinct electron and hole transports in SnSe crystals
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 67
year: '2022'
...
---
OA_place: publisher
_id: '11362'
abstract:
- lang: eng
  text: "Deep learning has enabled breakthroughs in challenging computing problems
    and has emerged as the standard problem-solving tool for computer vision and natural
    language processing tasks.\r\nOne exception to this trend is safety-critical tasks
    where robustness and resilience requirements contradict the black-box nature of
    neural networks. \r\nTo deploy deep learning methods for these tasks, it is vital
    to provide guarantees on neural network agents' safety and robustness criteria.
    \r\nThis can be achieved by developing formal verification methods to verify the
    safety and robustness properties of neural networks.\r\n\r\nOur goal is to design,
    develop and assess safety verification methods for neural networks to improve
    their reliability and trustworthiness in real-world applications.\r\nThis thesis
    establishes techniques for the verification of compressed and adversarially trained
    models as well as the design of novel neural networks for verifiably safe decision-making.\r\n\r\nFirst,
    we establish the problem of verifying quantized neural networks. Quantization
    is a technique that trades numerical precision for the computational efficiency
    of running a neural network and is widely adopted in industry.\r\nWe show that
    neglecting the reduced precision when verifying a neural network can lead to wrong
    conclusions about the robustness and safety of the network, highlighting that
    novel techniques for quantized network verification are necessary. We introduce
    several bit-exact verification methods explicitly designed for quantized neural
    networks and experimentally confirm on realistic networks that the network's robustness
    and other formal properties are affected by the quantization.\r\n\r\nFurthermore,
    we perform a case study providing evidence that adversarial training, a standard
    technique for making neural networks more robust, has detrimental effects on the
    network's performance. This robustness-accuracy tradeoff has been studied before
    regarding the accuracy obtained on classification datasets where each data point
    is independent of all other data points. On the other hand, we investigate the
    tradeoff empirically in robot learning settings where a both, a high accuracy
    and a high robustness, are desirable.\r\nOur results suggest that the negative
    side-effects of adversarial training outweigh its robustness benefits in practice.\r\n\r\nFinally,
    we consider the problem of verifying safety when running a Bayesian neural network
    policy in a feedback loop with systems over the infinite time horizon. Bayesian
    neural networks are probabilistic models for learning uncertainties in the data
    and are therefore often used on robotic and healthcare applications where data
    is inherently stochastic.\r\nWe introduce a method for recalibrating Bayesian
    neural networks so that they yield probability distributions over safe decisions
    only.\r\nOur method learns a safety certificate that guarantees safety over the
    infinite time horizon to determine which decisions are safe in every possible
    state of the system.\r\nWe demonstrate the effectiveness of our approach on a
    series of reinforcement learning benchmarks."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
citation:
  ama: Lechner M. Learning verifiable representations. 2022. doi:<a href="https://doi.org/10.15479/at:ista:11362">10.15479/at:ista:11362</a>
  apa: Lechner, M. (2022). <i>Learning verifiable representations</i>. Institute of
    Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:11362">https://doi.org/10.15479/at:ista:11362</a>
  chicago: Lechner, Mathias. “Learning Verifiable Representations.” Institute of Science
    and Technology Austria, 2022. <a href="https://doi.org/10.15479/at:ista:11362">https://doi.org/10.15479/at:ista:11362</a>.
  ieee: M. Lechner, “Learning verifiable representations,” Institute of Science and
    Technology Austria, 2022.
  ista: Lechner M. 2022. Learning verifiable representations. Institute of Science
    and Technology Austria.
  mla: Lechner, Mathias. <i>Learning Verifiable Representations</i>. Institute of
    Science and Technology Austria, 2022, doi:<a href="https://doi.org/10.15479/at:ista:11362">10.15479/at:ista:11362</a>.
  short: M. Lechner, Learning Verifiable Representations, Institute of Science and
    Technology Austria, 2022.
corr_author: '1'
date_created: 2022-05-12T07:14:01Z
date_published: 2022-05-12T00:00:00Z
date_updated: 2026-04-16T09:46:06Z
day: '12'
ddc:
- '004'
degree_awarded: PhD
department:
- _id: GradSch
- _id: ToHe
doi: 10.15479/at:ista:11362
ec_funded: 1
file:
- access_level: closed
  checksum: 8eefa9c7c10ca7e1a2ccdd731962a645
  content_type: application/zip
  creator: mlechner
  date_created: 2022-05-13T12:33:26Z
  date_updated: 2022-05-13T12:49:00Z
  file_id: '11378'
  file_name: src.zip
  file_size: 13210143
  relation: source_file
- access_level: open_access
  checksum: 1b9e1e5a9a83ed9d89dad2f5133dc026
  content_type: application/pdf
  creator: mlechner
  date_created: 2022-05-16T08:02:28Z
  date_updated: 2022-05-17T15:19:39Z
  file_id: '11382'
  file_name: thesis_main-a2.pdf
  file_size: 2732536
  relation: main_file
file_date_updated: 2022-05-17T15:19:39Z
has_accepted_license: '1'
keyword:
- neural networks
- verification
- machine learning
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nd/4.0/
month: '05'
oa: 1
oa_version: Published Version
page: '124'
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: Formal methods for the design and analysis of complex systems
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication_identifier:
  isbn:
  - 978-3-99078-017-6
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '11366'
    relation: part_of_dissertation
    status: public
  - id: '10665'
    relation: part_of_dissertation
    status: public
  - id: '10667'
    relation: part_of_dissertation
    status: public
  - id: '10666'
    relation: part_of_dissertation
    status: public
  - id: '7808'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
title: Learning verifiable representations
tmp:
  image: /image/cc_by_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nd/4.0/legalcode
  name: Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)
  short: CC BY-ND (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2022'
...
---
OA_place: repository
_id: '11366'
abstract:
- lang: eng
  text: "Adversarial training (i.e., training on adversarially perturbed input data)
    is a well-studied method for making neural networks robust to potential adversarial
    attacks during inference. However, the improved robustness does not\r\ncome for
    free but rather is accompanied by a decrease in overall model accuracy and performance.
    Recent work has shown that, in practical robot learning applications, the effects
    of adversarial training do not pose a fair trade-off\r\nbut inflict a net loss
    when measured in holistic robot performance. This work revisits the robustness-accuracy
    trade-off in robot learning by systematically analyzing if recent advances in
    robust training methods and theory in\r\nconjunction with adversarial robot learning
    can make adversarial training suitable for real-world robot applications. We evaluate
    a wide variety of robot learning tasks ranging from autonomous driving in a high-fidelity
    environment\r\namenable to sim-to-real deployment, to mobile robot gesture recognition.
    Our results demonstrate that, while these techniques make incremental improvements
    on the trade-off on a relative scale, the negative side-effects caused by\r\nadversarial
    training still outweigh the improvements by an order of magnitude. We conclude
    that more substantial advances in robust learning methods are necessary before
    they can benefit robot learning tasks in practice."
acknowledgement: "This work was supported in parts by the ERC-2020-AdG 101020093,
  National Science Foundation (NSF), and JP\r\nMorgan Graduate Fellowships. We thank
  Christoph Lampert for inspiring this work.\r\n"
article_number: '2204.07373'
article_processing_charge: No
arxiv: 1
author:
- first_name: Mathias
  full_name: Lechner, Mathias
  id: 3DC22916-F248-11E8-B48F-1D18A9856A87
  last_name: Lechner
- first_name: Alexander
  full_name: Amini, Alexander
  last_name: Amini
- first_name: Daniela
  full_name: Rus, Daniela
  last_name: Rus
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
citation:
  ama: Lechner M, Amini A, Rus D, Henzinger TA. Revisiting the adversarial robustness-accuracy
    tradeoff in robot learning. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2204.07373">10.48550/arXiv.2204.07373</a>
  apa: Lechner, M., Amini, A., Rus, D., &#38; Henzinger, T. A. (n.d.). Revisiting
    the adversarial robustness-accuracy tradeoff in robot learning. <i>arXiv</i>.
    <a href="https://doi.org/10.48550/arXiv.2204.07373">https://doi.org/10.48550/arXiv.2204.07373</a>
  chicago: Lechner, Mathias, Alexander Amini, Daniela Rus, and Thomas A Henzinger.
    “Revisiting the Adversarial Robustness-Accuracy Tradeoff in Robot Learning.” <i>ArXiv</i>,
    n.d. <a href="https://doi.org/10.48550/arXiv.2204.07373">https://doi.org/10.48550/arXiv.2204.07373</a>.
  ieee: M. Lechner, A. Amini, D. Rus, and T. A. Henzinger, “Revisiting the adversarial
    robustness-accuracy tradeoff in robot learning,” <i>arXiv</i>. .
  ista: Lechner M, Amini A, Rus D, Henzinger TA. Revisiting the adversarial robustness-accuracy
    tradeoff in robot learning. arXiv, 2204.07373.
  mla: Lechner, Mathias, et al. “Revisiting the Adversarial Robustness-Accuracy Tradeoff
    in Robot Learning.” <i>ArXiv</i>, 2204.07373, doi:<a href="https://doi.org/10.48550/arXiv.2204.07373">10.48550/arXiv.2204.07373</a>.
  short: M. Lechner, A. Amini, D. Rus, T.A. Henzinger, ArXiv (n.d.).
corr_author: '1'
date_created: 2022-05-12T13:20:17Z
date_published: 2022-04-15T00:00:00Z
date_updated: 2026-04-07T14:21:58Z
day: '15'
department:
- _id: ToHe
doi: 10.48550/arXiv.2204.07373
ec_funded: 1
external_id:
  arxiv:
  - '2204.07373'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2204.07373
month: '04'
oa: 1
oa_version: Preprint
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '12704'
    relation: later_version
    status: public
  - id: '11362'
    relation: dissertation_contains
    status: public
status: public
title: Revisiting the adversarial robustness-accuracy tradeoff in robot learning
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '11379'
abstract:
- lang: eng
  text: Bernal-stacked multilayer graphene is a versatile platform to explore quantum
    transport phenomena and interaction physics due to its exceptional tunability
    via electrostatic gating. For instance, upon applying a perpendicular electric
    field, its band structure exhibits several off-center Dirac points (so-called
    Dirac gullies) in each valley. Here, the formation of Dirac gullies and the interaction-induced
    breakdown of gully coherence is explored via magnetotransport measurements in
    high-quality Bernal-stacked (ABA) trilayer graphene. At zero magnetic field, multiple
    Lifshitz transitions indicating the formation of Dirac gullies are identified.
    In the quantum Hall regime, the emergence of Dirac gullies is evident as an increase
    in Landau level degeneracy. When tuning both electric and magnetic fields, electron–electron
    interactions can be controllably enhanced until, beyond critical electric and
    magnetic fields, the gully degeneracy is eventually lifted. The arising correlated
    ground state is consistent with a previously predicted nematic phase that spontaneously
    breaks the rotational gully symmetry.
acknowledgement: "We acknowledge funding from the Center for Nanoscience (CeNS) and
  by the Deutsche\r\nForschungsgemeinschaft (DFG, German Research Foundation) under
  Germany’s Excellence Strategy-EXC-2111-390814868 (MCQST). K.W. and T.T. acknowledge
  support from the Elemental Strategy Initiative conducted by the MEXT, Japan (Grant
  Number PMXP0112101001) and JSPS KAKENHI (Grant Numbers 19H05790 and JP20H00354)."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Felix
  full_name: Winterer, Felix
  last_name: Winterer
- first_name: Anna M.
  full_name: Seiler, Anna M.
  last_name: Seiler
- first_name: Areg
  full_name: Ghazaryan, Areg
  id: 4AF46FD6-F248-11E8-B48F-1D18A9856A87
  last_name: Ghazaryan
  orcid: 0000-0001-9666-3543
- first_name: Fabian R.
  full_name: Geisenhof, Fabian R.
  last_name: Geisenhof
- first_name: Kenji
  full_name: Watanabe, Kenji
  last_name: Watanabe
- first_name: Takashi
  full_name: Taniguchi, Takashi
  last_name: Taniguchi
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: R. Thomas
  full_name: Weitz, R. Thomas
  last_name: Weitz
citation:
  ama: Winterer F, Seiler AM, Ghazaryan A, et al. Spontaneous gully-polarized quantum
    hall states in ABA trilayer graphene. <i>Nano Letters</i>. 2022;22(8):3317-3322.
    doi:<a href="https://doi.org/10.1021/acs.nanolett.2c00435">10.1021/acs.nanolett.2c00435</a>
  apa: Winterer, F., Seiler, A. M., Ghazaryan, A., Geisenhof, F. R., Watanabe, K.,
    Taniguchi, T., … Weitz, R. T. (2022). Spontaneous gully-polarized quantum hall
    states in ABA trilayer graphene. <i>Nano Letters</i>. American Chemical Society.
    <a href="https://doi.org/10.1021/acs.nanolett.2c00435">https://doi.org/10.1021/acs.nanolett.2c00435</a>
  chicago: Winterer, Felix, Anna M. Seiler, Areg Ghazaryan, Fabian R. Geisenhof, Kenji
    Watanabe, Takashi Taniguchi, Maksym Serbyn, and R. Thomas Weitz. “Spontaneous
    Gully-Polarized Quantum Hall States in ABA Trilayer Graphene.” <i>Nano Letters</i>.
    American Chemical Society, 2022. <a href="https://doi.org/10.1021/acs.nanolett.2c00435">https://doi.org/10.1021/acs.nanolett.2c00435</a>.
  ieee: F. Winterer <i>et al.</i>, “Spontaneous gully-polarized quantum hall states
    in ABA trilayer graphene,” <i>Nano Letters</i>, vol. 22, no. 8. American Chemical
    Society, pp. 3317–3322, 2022.
  ista: Winterer F, Seiler AM, Ghazaryan A, Geisenhof FR, Watanabe K, Taniguchi T,
    Serbyn M, Weitz RT. 2022. Spontaneous gully-polarized quantum hall states in ABA
    trilayer graphene. Nano Letters. 22(8), 3317–3322.
  mla: Winterer, Felix, et al. “Spontaneous Gully-Polarized Quantum Hall States in
    ABA Trilayer Graphene.” <i>Nano Letters</i>, vol. 22, no. 8, American Chemical
    Society, 2022, pp. 3317–22, doi:<a href="https://doi.org/10.1021/acs.nanolett.2c00435">10.1021/acs.nanolett.2c00435</a>.
  short: F. Winterer, A.M. Seiler, A. Ghazaryan, F.R. Geisenhof, K. Watanabe, T. Taniguchi,
    M. Serbyn, R.T. Weitz, Nano Letters 22 (2022) 3317–3322.
date_created: 2022-05-15T22:01:41Z
date_published: 2022-04-27T00:00:00Z
date_updated: 2025-06-11T13:47:08Z
day: '27'
department:
- _id: MaSe
doi: 10.1021/acs.nanolett.2c00435
external_id:
  arxiv:
  - '2109.00556'
  isi:
  - '000809056900019'
  pmid:
  - '35405074'
intvolume: '        22'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2109.00556'
month: '04'
oa: 1
oa_version: Preprint
page: 3317-3322
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
  issn:
  - 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Spontaneous gully-polarized quantum hall states in ABA trilayer graphene
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2022'
...
---
_id: '11400'
abstract:
- lang: eng
  text: By varying the concentration of molecules in the cytoplasm or on the membrane,
    cells can induce the formation of condensates and liquid droplets, similar to
    phase separation. Their thermodynamics, much studied, depends on the mutual interactions
    between microscopic constituents. Here, we focus on the kinetics and size control
    of 2D clusters, forming on membranes. Using molecular dynamics of patchy colloids,
    we model a system of two species of proteins, giving origin to specific heterotypic
    bonds. We find that concentrations, together with valence and bond strength, control
    both the size and the growth time rate of the clusters. In particular, if one
    species is in large excess, it gradually saturates the binding sites of the other
    species; the system then becomes kinetically arrested and cluster coarsening slows
    down or stops, thus yielding effective size selection. This phenomenology is observed
    both in solid and fluid clusters, which feature additional generic homotypic interactions
    and are reminiscent of the ones observed on biological membranes.
acknowledgement: "The authors thank Longhui Zeng and Xiaolei Su (Yale University)
  for bringing the topic to their attention and for useful comments. This work has
  received funding from the European Research Council under the European Union’s Horizon\r\n2020
  research and innovation program (ERC Grant No. 802960 and Marie Skłodowska-Curie
  Grant No. 101034413). The authors are grateful to the UK Materials and Molecular
  Modeling Hub for computational resources, which is partially funded by EPSRC (Grant
  Nos. EP/P020194/1 and EP/T022213/1). The authors acknowledge support from ISTA and
  from the Royal Society (Grant No. UF160266)."
article_number: '194902'
article_processing_charge: No
article_type: original
author:
- first_name: Ivan
  full_name: Palaia, Ivan
  id: 9c805cd2-4b75-11ec-a374-db6dd0ed57fa
  last_name: Palaia
  orcid: ' 0000-0002-8843-9485 '
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
citation:
  ama: Palaia I, Šarić A. Controlling cluster size in 2D phase-separating binary mixtures
    with specific interactions. <i>The Journal of Chemical Physics</i>. 2022;156(19).
    doi:<a href="https://doi.org/10.1063/5.0087769">10.1063/5.0087769</a>
  apa: Palaia, I., &#38; Šarić, A. (2022). Controlling cluster size in 2D phase-separating
    binary mixtures with specific interactions. <i>The Journal of Chemical Physics</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0087769">https://doi.org/10.1063/5.0087769</a>
  chicago: Palaia, Ivan, and Anđela Šarić. “Controlling Cluster Size in 2D Phase-Separating
    Binary Mixtures with Specific Interactions.” <i>The Journal of Chemical Physics</i>.
    AIP Publishing, 2022. <a href="https://doi.org/10.1063/5.0087769">https://doi.org/10.1063/5.0087769</a>.
  ieee: I. Palaia and A. Šarić, “Controlling cluster size in 2D phase-separating binary
    mixtures with specific interactions,” <i>The Journal of Chemical Physics</i>,
    vol. 156, no. 19. AIP Publishing, 2022.
  ista: Palaia I, Šarić A. 2022. Controlling cluster size in 2D phase-separating binary
    mixtures with specific interactions. The Journal of Chemical Physics. 156(19),
    194902.
  mla: Palaia, Ivan, and Anđela Šarić. “Controlling Cluster Size in 2D Phase-Separating
    Binary Mixtures with Specific Interactions.” <i>The Journal of Chemical Physics</i>,
    vol. 156, no. 19, 194902, AIP Publishing, 2022, doi:<a href="https://doi.org/10.1063/5.0087769">10.1063/5.0087769</a>.
  short: I. Palaia, A. Šarić, The Journal of Chemical Physics 156 (2022).
corr_author: '1'
date_created: 2022-05-22T17:04:48Z
date_published: 2022-05-16T00:00:00Z
date_updated: 2025-06-11T14:00:32Z
day: '16'
ddc:
- '540'
department:
- _id: AnSa
doi: 10.1063/5.0087769
ec_funded: 1
external_id:
  isi:
  - '000797236000004'
  pmid:
  - '35597653'
file:
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  checksum: 7fada58059676a4bb0944b82247af740
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  date_created: 2022-05-23T07:45:33Z
  date_updated: 2022-05-23T07:45:33Z
  file_id: '11405'
  file_name: 2022_JourChemPhysics_Palaia.pdf
  file_size: 6387208
  relation: main_file
  success: 1
file_date_updated: 2022-05-23T07:45:33Z
has_accepted_license: '1'
intvolume: '       156'
isi: 1
issue: '19'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: eba2549b-77a9-11ec-83b8-a81e493eae4e
  call_identifier: H2020
  grant_number: '802960'
  name: 'Non-Equilibrium Protein Assembly: from Building Blocks to Biological Machines'
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Controlling cluster size in 2D phase-separating binary mixtures with specific
  interactions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 156
year: '2022'
...
---
_id: '11401'
abstract:
- lang: eng
  text: Tin selenide (SnSe) is considered a robust candidate for thermoelectric applications
    due to its very high thermoelectric figure of merit, ZT, with values of 2.6 in
    p-type and 2.8 in n-type single crystals. Sn has been replaced with various lower
    group dopants to achieve successful p-type doping in SnSe with high ZT values.
    A known, facile, and powerful alternative way to introduce a hole carrier is to
    use a natural single Sn vacancy, VSn. Through transport and scanning tunneling
    microscopy studies, we discovered that VSn are dominant in high-quality (slow
    cooling rate) SnSe single crystals, while multiple vacancies, Vmulti, are dominant
    in low-quality (high cooling rate) single crystals. Surprisingly, both VSn and
    Vmulti help to increase the power factors of SnSe, whereas samples with dominant
    VSn have superior thermoelectric properties in SnSe single crystals. Additionally,
    the observation that Vmulti are good p-type sources observed in relatively low-quality
    single crystals is useful in thermoelectric applications because polycrystalline
    SnSe can be used due to its mechanical strength; this substance is usually fabricated
    at very high cooling speeds.
acknowledgement: This work was supported by the National Research Foundation of Korea
  [NRF-2019R1F1A1058473, NRF-2019R1A6A1A11053838, and NRF-2020K1A4A7A02095438].
article_number: '42'
article_processing_charge: No
article_type: original
author:
- first_name: Van Quang
  full_name: Nguyen, Van Quang
  last_name: Nguyen
- first_name: Thi Ly
  full_name: Trinh, Thi Ly
  last_name: Trinh
- first_name: Cheng
  full_name: Chang, Cheng
  id: 9E331C2E-9F27-11E9-AE48-5033E6697425
  last_name: Chang
  orcid: 0000-0002-9515-4277
- first_name: Li Dong
  full_name: Zhao, Li Dong
  last_name: Zhao
- first_name: Thi Huong
  full_name: Nguyen, Thi Huong
  last_name: Nguyen
- first_name: Van Thiet
  full_name: Duong, Van Thiet
  last_name: Duong
- first_name: Anh Tuan
  full_name: Duong, Anh Tuan
  last_name: Duong
- first_name: Jong Ho
  full_name: Park, Jong Ho
  last_name: Park
- first_name: Sudong
  full_name: Park, Sudong
  last_name: Park
- first_name: Jungdae
  full_name: Kim, Jungdae
  last_name: Kim
- first_name: Sunglae
  full_name: Cho, Sunglae
  last_name: Cho
citation:
  ama: 'Nguyen VQ, Trinh TL, Chang C, et al. Unidentified major p-type source in SnSe:
    Multivacancies. <i>NPG Asia Materials</i>. 2022;14. doi:<a href="https://doi.org/10.1038/s41427-022-00393-5">10.1038/s41427-022-00393-5</a>'
  apa: 'Nguyen, V. Q., Trinh, T. L., Chang, C., Zhao, L. D., Nguyen, T. H., Duong,
    V. T., … Cho, S. (2022). Unidentified major p-type source in SnSe: Multivacancies.
    <i>NPG Asia Materials</i>. Springer Nature. <a href="https://doi.org/10.1038/s41427-022-00393-5">https://doi.org/10.1038/s41427-022-00393-5</a>'
  chicago: 'Nguyen, Van Quang, Thi Ly Trinh, Cheng Chang, Li Dong Zhao, Thi Huong
    Nguyen, Van Thiet Duong, Anh Tuan Duong, et al. “Unidentified Major P-Type Source
    in SnSe: Multivacancies.” <i>NPG Asia Materials</i>. Springer Nature, 2022. <a
    href="https://doi.org/10.1038/s41427-022-00393-5">https://doi.org/10.1038/s41427-022-00393-5</a>.'
  ieee: 'V. Q. Nguyen <i>et al.</i>, “Unidentified major p-type source in SnSe: Multivacancies,”
    <i>NPG Asia Materials</i>, vol. 14. Springer Nature, 2022.'
  ista: 'Nguyen VQ, Trinh TL, Chang C, Zhao LD, Nguyen TH, Duong VT, Duong AT, Park
    JH, Park S, Kim J, Cho S. 2022. Unidentified major p-type source in SnSe: Multivacancies.
    NPG Asia Materials. 14, 42.'
  mla: 'Nguyen, Van Quang, et al. “Unidentified Major P-Type Source in SnSe: Multivacancies.”
    <i>NPG Asia Materials</i>, vol. 14, 42, Springer Nature, 2022, doi:<a href="https://doi.org/10.1038/s41427-022-00393-5">10.1038/s41427-022-00393-5</a>.'
  short: V.Q. Nguyen, T.L. Trinh, C. Chang, L.D. Zhao, T.H. Nguyen, V.T. Duong, A.T.
    Duong, J.H. Park, S. Park, J. Kim, S. Cho, NPG Asia Materials 14 (2022).
date_created: 2022-05-22T22:01:40Z
date_published: 2022-05-13T00:00:00Z
date_updated: 2023-08-03T07:13:58Z
day: '13'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1038/s41427-022-00393-5
external_id:
  isi:
  - '000794880200001'
file:
- access_level: open_access
  checksum: 0579997cc1d28bf66e29357e08e3e39d
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-23T06:47:57Z
  date_updated: 2022-05-23T06:47:57Z
  file_id: '11404'
  file_name: 2022_NPGAsiaMaterials_Nguyen.pdf
  file_size: 6202545
  relation: main_file
  success: 1
file_date_updated: 2022-05-23T06:47:57Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: NPG Asia Materials
publication_identifier:
  eissn:
  - 1884-4057
  issn:
  - 1884-4049
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Unidentified major p-type source in SnSe: Multivacancies'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2022'
...
---
_id: '11402'
abstract:
- lang: eng
  text: Fixed-horizon planning considers a weighted graph and asks to construct a
    path that maximizes the sum of weights for a given time horizon T. However, in
    many scenarios, the time horizon is not fixed, but the stopping time is chosen
    according to some distribution such that the expected stopping time is T. If the
    stopping-time distribution is not known, then to ensure robustness, the distribution
    is chosen by an adversary as the worst-case scenario. A stationary plan for every
    vertex always chooses the same outgoing edge. For fixed horizon or fixed stopping-time
    distribution, stationary plans are not sufficient for optimality. Quite surprisingly
    we show that when an adversary chooses the stopping-time distribution with expected
    stopping-time T, then stationary plans are sufficient. While computing optimal
    stationary plans for fixed horizon is NP-complete, we show that computing optimal
    stationary plans under adversarial stopping-time distribution can be achieved
    in polynomial time.
acknowledgement: This work was partially supported by Austrian Science Fund (FWF)
  NFN Grant No RiSE/SHiNE S11407 and by the grant ERC CoG 863818 (ForM-SMArt).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Laurent
  full_name: Doyen, Laurent
  last_name: Doyen
citation:
  ama: Chatterjee K, Doyen L. Graph planning with expected finite horizon. <i>Journal
    of Computer and System Sciences</i>. 2022;129:1-21. doi:<a href="https://doi.org/10.1016/j.jcss.2022.04.003">10.1016/j.jcss.2022.04.003</a>
  apa: Chatterjee, K., &#38; Doyen, L. (2022). Graph planning with expected finite
    horizon. <i>Journal of Computer and System Sciences</i>. Elsevier. <a href="https://doi.org/10.1016/j.jcss.2022.04.003">https://doi.org/10.1016/j.jcss.2022.04.003</a>
  chicago: Chatterjee, Krishnendu, and Laurent Doyen. “Graph Planning with Expected
    Finite Horizon.” <i>Journal of Computer and System Sciences</i>. Elsevier, 2022.
    <a href="https://doi.org/10.1016/j.jcss.2022.04.003">https://doi.org/10.1016/j.jcss.2022.04.003</a>.
  ieee: K. Chatterjee and L. Doyen, “Graph planning with expected finite horizon,”
    <i>Journal of Computer and System Sciences</i>, vol. 129. Elsevier, pp. 1–21,
    2022.
  ista: Chatterjee K, Doyen L. 2022. Graph planning with expected finite horizon.
    Journal of Computer and System Sciences. 129, 1–21.
  mla: Chatterjee, Krishnendu, and Laurent Doyen. “Graph Planning with Expected Finite
    Horizon.” <i>Journal of Computer and System Sciences</i>, vol. 129, Elsevier,
    2022, pp. 1–21, doi:<a href="https://doi.org/10.1016/j.jcss.2022.04.003">10.1016/j.jcss.2022.04.003</a>.
  short: K. Chatterjee, L. Doyen, Journal of Computer and System Sciences 129 (2022)
    1–21.
date_created: 2022-05-22T22:01:40Z
date_published: 2022-11-01T00:00:00Z
date_updated: 2025-07-10T11:54:34Z
day: '01'
department:
- _id: KrCh
doi: 10.1016/j.jcss.2022.04.003
ec_funded: 1
external_id:
  arxiv:
  - '1802.03642'
  isi:
  - '000805002800001'
intvolume: '       129'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.1802.03642'
month: '11'
oa: 1
oa_version: Preprint
page: 1-21
project:
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: Journal of Computer and System Sciences
publication_identifier:
  eissn:
  - 1090-2724
  issn:
  - 0022-0000
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '7402'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Graph planning with expected finite horizon
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 129
year: '2022'
...
---
_id: '11403'
article_processing_charge: No
article_type: original
author:
- first_name: Andrea
  full_name: Stöllner, Andrea
  id: 4bdcf7f6-eb97-11eb-a6c2-9981bbdc3bed
  last_name: Stöllner
  orcid: 0000-0002-0464-8440
citation:
  ama: Stöllner A. Measuring airborne nanoplastics using aerosol physics. <i>Nature
    Reviews Earth and Environment</i>. 2022;3(6):360. doi:<a href="https://doi.org/10.1038/s43017-022-00302-y">10.1038/s43017-022-00302-y</a>
  apa: Stöllner, A. (2022). Measuring airborne nanoplastics using aerosol physics.
    <i>Nature Reviews Earth and Environment</i>. Springer Nature. <a href="https://doi.org/10.1038/s43017-022-00302-y">https://doi.org/10.1038/s43017-022-00302-y</a>
  chicago: Stöllner, Andrea. “Measuring Airborne Nanoplastics Using Aerosol Physics.”
    <i>Nature Reviews Earth and Environment</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s43017-022-00302-y">https://doi.org/10.1038/s43017-022-00302-y</a>.
  ieee: A. Stöllner, “Measuring airborne nanoplastics using aerosol physics,” <i>Nature
    Reviews Earth and Environment</i>, vol. 3, no. 6. Springer Nature, p. 360, 2022.
  ista: Stöllner A. 2022. Measuring airborne nanoplastics using aerosol physics. Nature
    Reviews Earth and Environment. 3(6), 360.
  mla: Stöllner, Andrea. “Measuring Airborne Nanoplastics Using Aerosol Physics.”
    <i>Nature Reviews Earth and Environment</i>, vol. 3, no. 6, Springer Nature, 2022,
    p. 360, doi:<a href="https://doi.org/10.1038/s43017-022-00302-y">10.1038/s43017-022-00302-y</a>.
  short: A. Stöllner, Nature Reviews Earth and Environment 3 (2022) 360.
corr_author: '1'
date_created: 2022-05-22T22:01:41Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2024-10-09T21:02:28Z
day: '01'
department:
- _id: GradSch
doi: 10.1038/s43017-022-00302-y
external_id:
  isi:
  - '000791125600002'
intvolume: '         3'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa_version: None
page: '360'
publication: Nature Reviews Earth and Environment
publication_identifier:
  eissn:
  - 2662-138X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Measuring airborne nanoplastics using aerosol physics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2022'
...
---
_id: '11411'
abstract:
- lang: eng
  text: Many studies have quantified the distribution of heterozygosity and relatedness
    in natural populations, but few have examined the demographic processes driving
    these patterns. In this study, we take a novel approach by studying how population
    structure affects both pairwise identity and the distribution of heterozygosity
    in a natural population of the self-incompatible plant Antirrhinum majus. Excess
    variance in heterozygosity between individuals is due to identity disequilibrium,
    which reflects the variance in inbreeding between individuals; it is measured
    by the statistic g2. We calculated g2 together with FST and pairwise relatedness
    (Fij) using 91 SNPs in 22,353 individuals collected over 11 years. We find that
    pairwise Fij declines rapidly over short spatial scales, and the excess variance
    in heterozygosity between individuals reflects significant variation in inbreeding.
    Additionally, we detect an excess of individuals with around half the average
    heterozygosity, indicating either selfing or matings between close relatives.
    We use 2 types of simulation to ask whether variation in heterozygosity is consistent
    with fine-scale spatial population structure. First, by simulating offspring using
    parents drawn from a range of spatial scales, we show that the known pollen dispersal
    kernel explains g2. Second, we simulate a 1,000-generation pedigree using the
    known dispersal and spatial distribution and find that the resulting g2 is consistent
    with that observed from the field data. In contrast, a simulated population with
    uniform density underestimates g2, indicating that heterogeneous density promotes
    identity disequilibrium. Our study shows that heterogeneous density and leptokurtic
    dispersal can together explain the distribution of heterozygosity.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "Part of this work was funded by Marie Curie COFUND Doctoral Fellowship
  and Austrian Science Fund FWF (grant P32166).\r\nWe thank the many volunteers and
  friends who have contributed to data collection in the field site over the years,
  in particular those who have managed field seasons: Barbora Trubenova, Maria Clara
  Melo, Tom Ellis, Eva Cereghetti, Lenka Matejovicova, Beatriz Pablo Carmona. Frederic
  Ferrer and Eva Salmerón Mateu have been immensely helpful with logistics at our
  informal field station, El Serrat de Planoles. We thank Sean Stankowski for technical
  help in\r\nproducing figure 1. This research was also supported by the Scientific
  Service Units (SSU) of IST Austria through resources provided by Scientific Computing
  (SciComp)."
article_number: iyac083
article_processing_charge: No
article_type: original
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
  orcid: 0000-0001-6395-386X
- first_name: Louise S
  full_name: Arathoon, Louise S
  id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
  last_name: Arathoon
  orcid: 0000-0003-1771-714X
- first_name: Carina
  full_name: Baskett, Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
  orcid: 0000-0002-7354-8574
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects
    of fine-scale population structure on the distribution of heterozygosity in a
    long-term study of Antirrhinum majus. <i>Genetics</i>. 2022;221(3). doi:<a href="https://doi.org/10.1093/genetics/iyac083">10.1093/genetics/iyac083</a>
  apa: Surendranadh, P., Arathoon, L. S., Baskett, C., Field, D., Pickup, M., &#38;
    Barton, N. H. (2022). Effects of fine-scale population structure on the distribution
    of heterozygosity in a long-term study of Antirrhinum majus. <i>Genetics</i>.
    Oxford University Press. <a href="https://doi.org/10.1093/genetics/iyac083">https://doi.org/10.1093/genetics/iyac083</a>
  chicago: Surendranadh, Parvathy, Louise S Arathoon, Carina Baskett, David Field,
    Melinda Pickup, and Nicholas H Barton. “Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus.”
    <i>Genetics</i>. Oxford University Press, 2022. <a href="https://doi.org/10.1093/genetics/iyac083">https://doi.org/10.1093/genetics/iyac083</a>.
  ieee: P. Surendranadh, L. S. Arathoon, C. Baskett, D. Field, M. Pickup, and N. H.
    Barton, “Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus,” <i>Genetics</i>, vol. 221, no. 3.
    Oxford University Press, 2022.
  ista: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. 2022.
    Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus. Genetics. 221(3), iyac083.
  mla: Surendranadh, Parvathy, et al. “Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus.”
    <i>Genetics</i>, vol. 221, no. 3, iyac083, Oxford University Press, 2022, doi:<a
    href="https://doi.org/10.1093/genetics/iyac083">10.1093/genetics/iyac083</a>.
  short: P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton,
    Genetics 221 (2022).
corr_author: '1'
date_created: 2022-05-26T13:44:50Z
date_published: 2022-07-01T00:00:00Z
date_updated: 2026-04-07T13:28:29Z
day: '01'
ddc:
- '576'
department:
- _id: GradSch
- _id: NiBa
doi: 10.1093/genetics/iyac083
external_id:
  isi:
  - '000803735800001'
  pmid:
  - '35639938'
file:
- access_level: open_access
  checksum: cc2d56deb608bd53c5cc02f03a875107
  content_type: application/pdf
  creator: larathoo
  date_created: 2022-05-26T12:48:15Z
  date_updated: 2022-05-26T12:48:15Z
  file_id: '11412'
  file_name: Manuscript.pdf
  file_size: 885374
  relation: main_file
  success: 1
- access_level: open_access
  checksum: 693742595b6c7ed809423be01460d083
  content_type: application/pdf
  creator: larathoo
  date_created: 2022-05-26T12:48:21Z
  date_updated: 2022-05-26T12:48:21Z
  file_id: '11413'
  file_name: SupplementalMaterial.pdf
  file_size: 1401704
  relation: main_file
  success: 1
file_date_updated: 2022-05-26T12:48:21Z
has_accepted_license: '1'
intvolume: '       221'
isi: 1
issue: '3'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
pmid: 1
project:
- _id: 05959E1C-7A3F-11EA-A408-12923DDC885E
  grant_number: P32166
  name: Snapdragon Speciation
publication: Genetics
publication_identifier:
  eissn:
  - 1943-2631
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
  record:
  - id: '9192'
    relation: research_data
    status: public
  - id: '11321'
    relation: research_data
    status: public
  - id: '14651'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Effects of fine-scale population structure on the distribution of heterozygosity
  in a long-term study of Antirrhinum majus
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 221
year: '2022'
...
---
_id: '11417'
abstract:
- lang: eng
  text: "Over the past few years, the field of quantum information science has seen
    tremendous progress toward realizing large-scale quantum computers. With demonstrations
    of quantum computers outperforming classical computers for a select range of problems,1–3
    we have finally entered the noisy, intermediate-scale quantum (NISQ) computing
    era. While the quantum computers of today are technological marvels, they are
    not yet error corrected, and it is unclear whether any system will scale beyond
    a few hundred logical qubits without significant changes to architecture and control
    schemes. Today's quantum systems are analogous to the ENIAC (Electronic Numerical
    Integrator And Computer) and EDVAC (Electronic Discrete Variable Automatic Computer)
    systems of the 1940s, which ran on vacuum tubes. These machines were built on
    a solid, nominally scalable architecture and when they were developed, nobody
    could have predicted the development of the transistor and the impact of the resulting
    semiconductor industry. Simply put, the computers of today are nothing like the
    early computers of the 1940s. We believe that the qubits of future fault-tolerant
    quantum systems will look quite different from the qubits of the NISQ machines
    in operation today. This Special Topic issue is devoted to new and emerging quantum
    systems with a focus on enabling technologies that can eventually lead to the
    quantum analog to the transistor. We have solicited both research4–18 and perspective
    articles19–21 to discuss new and emerging qubit systems with a focus on novel
    materials, encodings, and architectures. We are proud to present a collection
    that touches on a wide range of technologies including superconductors,7–13,21
    semiconductors,15–17,19 and individual atomic qubits.18\r\n"
acknowledgement: "We would like to thank all of the authors who contributed to\r\nthis
  Special Topic. We would also like to thank the editorial team at\r\nAPL including
  Jessica Trudeau, Emma Van Burns, Martin Weides,\r\nand Lesley Cohen."
article_number: '190401'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Anthony J.
  full_name: Sigillito, Anthony J.
  last_name: Sigillito
- first_name: Jacob P.
  full_name: Covey, Jacob P.
  last_name: Covey
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: Karl
  full_name: Petersson, Karl
  last_name: Petersson
- first_name: Stefan
  full_name: Preble, Stefan
  last_name: Preble
citation:
  ama: 'Sigillito AJ, Covey JP, Fink JM, Petersson K, Preble S. Emerging qubit systems:
    Guest editorial. <i>Applied Physics Letters</i>. 2022;120(19). doi:<a href="https://doi.org/10.1063/5.0097339">10.1063/5.0097339</a>'
  apa: 'Sigillito, A. J., Covey, J. P., Fink, J. M., Petersson, K., &#38; Preble,
    S. (2022). Emerging qubit systems: Guest editorial. <i>Applied Physics Letters</i>.
    American Institute of Physics. <a href="https://doi.org/10.1063/5.0097339">https://doi.org/10.1063/5.0097339</a>'
  chicago: 'Sigillito, Anthony J., Jacob P. Covey, Johannes M Fink, Karl Petersson,
    and Stefan Preble. “Emerging Qubit Systems: Guest Editorial.” <i>Applied Physics
    Letters</i>. American Institute of Physics, 2022. <a href="https://doi.org/10.1063/5.0097339">https://doi.org/10.1063/5.0097339</a>.'
  ieee: 'A. J. Sigillito, J. P. Covey, J. M. Fink, K. Petersson, and S. Preble, “Emerging
    qubit systems: Guest editorial,” <i>Applied Physics Letters</i>, vol. 120, no.
    19. American Institute of Physics, 2022.'
  ista: 'Sigillito AJ, Covey JP, Fink JM, Petersson K, Preble S. 2022. Emerging qubit
    systems: Guest editorial. Applied Physics Letters. 120(19), 190401.'
  mla: 'Sigillito, Anthony J., et al. “Emerging Qubit Systems: Guest Editorial.” <i>Applied
    Physics Letters</i>, vol. 120, no. 19, 190401, American Institute of Physics,
    2022, doi:<a href="https://doi.org/10.1063/5.0097339">10.1063/5.0097339</a>.'
  short: A.J. Sigillito, J.P. Covey, J.M. Fink, K. Petersson, S. Preble, Applied Physics
    Letters 120 (2022).
date_created: 2022-05-29T22:01:53Z
date_published: 2022-05-12T00:00:00Z
date_updated: 2026-06-18T17:14:33Z
day: '12'
ddc:
- '530'
department:
- _id: JoFi
doi: 10.1063/5.0097339
external_id:
  isi:
  - '000796002100002'
intvolume: '       120'
isi: 1
issue: '19'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1063/5.0097339
month: '05'
oa: 1
oa_version: Published Version
publication: Applied Physics Letters
publication_identifier:
  issn:
  - 0003-6951
publication_status: published
publisher: American Institute of Physics
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Emerging qubit systems: Guest editorial'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 120
year: '2022'
...
---
_id: '11418'
abstract:
- lang: eng
  text: "We consider the quadratic form of a general high-rank deterministic matrix
    on the eigenvectors of an N×N\r\nWigner matrix and prove that it has Gaussian
    fluctuation for each bulk eigenvector in the large N limit. The proof is a combination
    of the energy method for the Dyson Brownian motion inspired by Marcinek and Yau
    (2021) and our recent multiresolvent local laws (Comm. Math. Phys. 388 (2021)
    1005–1048)."
acknowledgement: L.E. would like to thank Zhigang Bao for many illuminating discussions
  in an early stage of this research. The authors are also grateful to Paul Bourgade
  for his comments on the manuscript and the anonymous referee for several useful
  suggestions.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giorgio
  full_name: Cipolloni, Giorgio
  id: 42198EFA-F248-11E8-B48F-1D18A9856A87
  last_name: Cipolloni
  orcid: 0000-0002-4901-7992
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Dominik J
  full_name: Schröder, Dominik J
  id: 408ED176-F248-11E8-B48F-1D18A9856A87
  last_name: Schröder
  orcid: 0000-0002-2904-1856
citation:
  ama: Cipolloni G, Erdös L, Schröder DJ. Normal fluctuation in quantum ergodicity
    for Wigner matrices. <i>Annals of Probability</i>. 2022;50(3):984-1012. doi:<a
    href="https://doi.org/10.1214/21-AOP1552">10.1214/21-AOP1552</a>
  apa: Cipolloni, G., Erdös, L., &#38; Schröder, D. J. (2022). Normal fluctuation
    in quantum ergodicity for Wigner matrices. <i>Annals of Probability</i>. Institute
    of Mathematical Statistics. <a href="https://doi.org/10.1214/21-AOP1552">https://doi.org/10.1214/21-AOP1552</a>
  chicago: Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Normal Fluctuation
    in Quantum Ergodicity for Wigner Matrices.” <i>Annals of Probability</i>. Institute
    of Mathematical Statistics, 2022. <a href="https://doi.org/10.1214/21-AOP1552">https://doi.org/10.1214/21-AOP1552</a>.
  ieee: G. Cipolloni, L. Erdös, and D. J. Schröder, “Normal fluctuation in quantum
    ergodicity for Wigner matrices,” <i>Annals of Probability</i>, vol. 50, no. 3.
    Institute of Mathematical Statistics, pp. 984–1012, 2022.
  ista: Cipolloni G, Erdös L, Schröder DJ. 2022. Normal fluctuation in quantum ergodicity
    for Wigner matrices. Annals of Probability. 50(3), 984–1012.
  mla: Cipolloni, Giorgio, et al. “Normal Fluctuation in Quantum Ergodicity for Wigner
    Matrices.” <i>Annals of Probability</i>, vol. 50, no. 3, Institute of Mathematical
    Statistics, 2022, pp. 984–1012, doi:<a href="https://doi.org/10.1214/21-AOP1552">10.1214/21-AOP1552</a>.
  short: G. Cipolloni, L. Erdös, D.J. Schröder, Annals of Probability 50 (2022) 984–1012.
date_created: 2022-05-29T22:01:53Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2023-08-03T07:16:53Z
day: '01'
department:
- _id: LaEr
doi: 10.1214/21-AOP1552
external_id:
  arxiv:
  - '2103.06730'
  isi:
  - '000793963400005'
intvolume: '        50'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2103.06730
month: '05'
oa: 1
oa_version: Preprint
page: 984-1012
publication: Annals of Probability
publication_identifier:
  eissn:
  - 2168-894X
  issn:
  - 0091-1798
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Normal fluctuation in quantum ergodicity for Wigner matrices
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 50
year: '2022'
...
---
_id: '11419'
abstract:
- lang: eng
  text: Elevation of soluble wild-type (WT) tau occurs in synaptic compartments in
    Alzheimer’s disease. We addressed whether tau elevation affects synaptic transmission
    at the calyx of Held in slices from mice brainstem. Whole-cell loading of WT human
    tau (h-tau) in presynaptic terminals at 10–20 µM caused microtubule (MT) assembly
    and activity-dependent rundown of excitatory neurotransmission. Capacitance measurements
    revealed that the primary target of WT h-tau is vesicle endocytosis. Blocking
    MT assembly using nocodazole prevented tau-induced impairments of endocytosis
    and neurotransmission. Immunofluorescence imaging analyses revealed that MT assembly
    by WT h-tau loading was associated with an increased MT-bound fraction of the
    endocytic protein dynamin. A synthetic dodecapeptide corresponding to dynamin
    1-pleckstrin-homology domain inhibited MT-dynamin interaction and rescued tau-induced
    impairments of endocytosis and neurotransmission. We conclude that elevation of
    presynaptic WT tau induces de novo assembly of MTs, thereby sequestering free
    dynamins. As a result, endocytosis and subsequent vesicle replenishment are impaired,
    causing activity-dependent rundown of neurotransmission.
acknowledgement: We thank Yasuo Ihara, Nobuyuki Nukina, and Takeshi Sakaba for comments
  and Patrick Stoney for editing this paper. We also thank Shota Okuda and Mikako
  Matsubara for their contributions in the early stage of this study, and Satoko Wada-Kakuda
  for technical assistant with in vitro analysis of tau. This research was supported
  by funding from Okinawa Institute of Science and Technology and from Technology
  (OIST) and Core Research for the Evolutional Science and Technology of Japan Science
  and Technology Agency (CREST) to TT, and by Scientific Research on Innovative Areas
  to TM (Brain Protein Aging and Dementia Control 26117004).
article_number: e73542
article_processing_charge: No
article_type: original
author:
- first_name: Tetsuya
  full_name: Hori, Tetsuya
  last_name: Hori
- first_name: Kohgaku
  full_name: Eguchi, Kohgaku
  id: 2B7846DC-F248-11E8-B48F-1D18A9856A87
  last_name: Eguchi
  orcid: 0000-0002-6170-2546
- first_name: Han Ying
  full_name: Wang, Han Ying
  last_name: Wang
- first_name: Tomohiro
  full_name: Miyasaka, Tomohiro
  last_name: Miyasaka
- first_name: Laurent
  full_name: Guillaud, Laurent
  last_name: Guillaud
- first_name: Zacharie
  full_name: Taoufiq, Zacharie
  last_name: Taoufiq
- first_name: Satyajit
  full_name: Mahapatra, Satyajit
  last_name: Mahapatra
- first_name: Hiroshi
  full_name: Yamada, Hiroshi
  last_name: Yamada
- first_name: Kohji
  full_name: Takei, Kohji
  last_name: Takei
- first_name: Tomoyuki
  full_name: Takahashi, Tomoyuki
  last_name: Takahashi
citation:
  ama: Hori T, Eguchi K, Wang HY, et al. Microtubule assembly by tau impairs endocytosis
    and neurotransmission via dynamin sequestration in Alzheimer’s disease synapse
    model. <i>eLife</i>. 2022;11. doi:<a href="https://doi.org/10.7554/eLife.73542">10.7554/eLife.73542</a>
  apa: Hori, T., Eguchi, K., Wang, H. Y., Miyasaka, T., Guillaud, L., Taoufiq, Z.,
    … Takahashi, T. (2022). Microtubule assembly by tau impairs endocytosis and neurotransmission
    via dynamin sequestration in Alzheimer’s disease synapse model. <i>ELife</i>.
    eLife Sciences Publications. <a href="https://doi.org/10.7554/eLife.73542">https://doi.org/10.7554/eLife.73542</a>
  chicago: Hori, Tetsuya, Kohgaku Eguchi, Han Ying Wang, Tomohiro Miyasaka, Laurent
    Guillaud, Zacharie Taoufiq, Satyajit Mahapatra, Hiroshi Yamada, Kohji Takei, and
    Tomoyuki Takahashi. “Microtubule Assembly by Tau Impairs Endocytosis and Neurotransmission
    via Dynamin Sequestration in Alzheimer’s Disease Synapse Model.” <i>ELife</i>.
    eLife Sciences Publications, 2022. <a href="https://doi.org/10.7554/eLife.73542">https://doi.org/10.7554/eLife.73542</a>.
  ieee: T. Hori <i>et al.</i>, “Microtubule assembly by tau impairs endocytosis and
    neurotransmission via dynamin sequestration in Alzheimer’s disease synapse model,”
    <i>eLife</i>, vol. 11. eLife Sciences Publications, 2022.
  ista: Hori T, Eguchi K, Wang HY, Miyasaka T, Guillaud L, Taoufiq Z, Mahapatra S,
    Yamada H, Takei K, Takahashi T. 2022. Microtubule assembly by tau impairs endocytosis
    and neurotransmission via dynamin sequestration in Alzheimer’s disease synapse
    model. eLife. 11, e73542.
  mla: Hori, Tetsuya, et al. “Microtubule Assembly by Tau Impairs Endocytosis and
    Neurotransmission via Dynamin Sequestration in Alzheimer’s Disease Synapse Model.”
    <i>ELife</i>, vol. 11, e73542, eLife Sciences Publications, 2022, doi:<a href="https://doi.org/10.7554/eLife.73542">10.7554/eLife.73542</a>.
  short: T. Hori, K. Eguchi, H.Y. Wang, T. Miyasaka, L. Guillaud, Z. Taoufiq, S. Mahapatra,
    H. Yamada, K. Takei, T. Takahashi, ELife 11 (2022).
date_created: 2022-05-29T22:01:54Z
date_published: 2022-05-05T00:00:00Z
date_updated: 2023-08-03T07:15:49Z
day: '05'
ddc:
- '616'
department:
- _id: RySh
doi: 10.7554/eLife.73542
external_id:
  isi:
  - '000876231600001'
  pmid:
  - '35471147 '
file:
- access_level: open_access
  checksum: ccddbd167e00ff8375f12998af497152
  content_type: application/pdf
  creator: cchlebak
  date_created: 2022-05-30T08:09:16Z
  date_updated: 2022-05-30T08:09:16Z
  file_id: '11421'
  file_name: elife-73542-v2.pdf
  file_size: 2466296
  relation: main_file
  success: 1
file_date_updated: 2022-05-30T08:09:16Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
  eissn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Microtubule assembly by tau impairs endocytosis and neurotransmission via dynamin
  sequestration in Alzheimer's disease synapse model
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2022'
...
---
_id: '11428'
abstract:
- lang: eng
  text: The medial axis of a set consists of the points in the ambient space without
    a unique closest point on the original set. Since its introduction, the medial
    axis has been used extensively in many applications as a method of computing a
    topologically equivalent skeleton. Unfortunately, one limiting factor in the use
    of the medial axis of a smooth manifold is that it is not necessarily topologically
    stable under small perturbations of the manifold. To counter these instabilities
    various prunings of the medial axis have been proposed. Here, we examine one type
    of pruning, called burning. Because of the good experimental results, it was hoped
    that the burning method of simplifying the medial axis would be stable. In this
    work we show a simple example that dashes such hopes based on Bing’s house with
    two rooms, demonstrating an isotopy of a shape where the medial axis goes from
    collapsible to non-collapsible.
acknowledgement: 'Partially supported by the DFG Collaborative Research Center TRR
  109, “Discretization in Geometry and Dynamics” and the European Research Council
  (ERC), grant no. 788183, “Alpha Shape Theory Extended”. Erin Chambers: Supported
  in part by the National Science Foundation through grants DBI-1759807, CCF-1907612,
  and CCF-2106672. Mathijs Wintraecken: Supported by the European Union’s Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement
  No. 754411. The Austrian science fund (FWF) M-3073 Acknowledgements We thank André
  Lieutier, David Letscher, Ellen Gasparovic, Kathryn Leonard, and Tao Ju for early
  discussions on this work. We also thank Lu Liu, Yajie Yan and Tao Ju for sharing
  code to generate the examples.'
article_processing_charge: No
author:
- first_name: Erin
  full_name: Chambers, Erin
  last_name: Chambers
- first_name: Christopher D
  full_name: Fillmore, Christopher D
  id: 35638A5C-AAC7-11E9-B0BF-5503E6697425
  last_name: Fillmore
- first_name: Elizabeth R
  full_name: Stephenson, Elizabeth R
  id: 2D04F932-F248-11E8-B48F-1D18A9856A87
  last_name: Stephenson
  orcid: 0000-0002-6862-208X
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: 'Chambers E, Fillmore CD, Stephenson ER, Wintraecken M. A cautionary tale:
    Burning the medial axis is unstable. In: Goaoc X, Kerber M, eds. <i>38th International
    Symposium on Computational Geometry</i>. Vol 224. LIPIcs. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik; 2022:66:1-66:9. doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2022.66">10.4230/LIPIcs.SoCG.2022.66</a>'
  apa: 'Chambers, E., Fillmore, C. D., Stephenson, E. R., &#38; Wintraecken, M. (2022).
    A cautionary tale: Burning the medial axis is unstable. In X. Goaoc &#38; M. Kerber
    (Eds.), <i>38th International Symposium on Computational Geometry</i> (Vol. 224,
    p. 66:1-66:9). Berlin, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
    <a href="https://doi.org/10.4230/LIPIcs.SoCG.2022.66">https://doi.org/10.4230/LIPIcs.SoCG.2022.66</a>'
  chicago: 'Chambers, Erin, Christopher D Fillmore, Elizabeth R Stephenson, and Mathijs
    Wintraecken. “A Cautionary Tale: Burning the Medial Axis Is Unstable.” In <i>38th
    International Symposium on Computational Geometry</i>, edited by Xavier Goaoc
    and Michael Kerber, 224:66:1-66:9. LIPIcs. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2022. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2022.66">https://doi.org/10.4230/LIPIcs.SoCG.2022.66</a>.'
  ieee: 'E. Chambers, C. D. Fillmore, E. R. Stephenson, and M. Wintraecken, “A cautionary
    tale: Burning the medial axis is unstable,” in <i>38th International Symposium
    on Computational Geometry</i>, Berlin, Germany, 2022, vol. 224, p. 66:1-66:9.'
  ista: 'Chambers E, Fillmore CD, Stephenson ER, Wintraecken M. 2022. A cautionary
    tale: Burning the medial axis is unstable. 38th International Symposium on Computational
    Geometry. SoCG: Symposium on Computational GeometryLIPIcs vol. 224, 66:1-66:9.'
  mla: 'Chambers, Erin, et al. “A Cautionary Tale: Burning the Medial Axis Is Unstable.”
    <i>38th International Symposium on Computational Geometry</i>, edited by Xavier
    Goaoc and Michael Kerber, vol. 224, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2022, p. 66:1-66:9, doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2022.66">10.4230/LIPIcs.SoCG.2022.66</a>.'
  short: E. Chambers, C.D. Fillmore, E.R. Stephenson, M. Wintraecken, in:, X. Goaoc,
    M. Kerber (Eds.), 38th International Symposium on Computational Geometry, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2022, p. 66:1-66:9.
conference:
  end_date: 2022-06-10
  location: Berlin, Germany
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2022-06-07
corr_author: '1'
date_created: 2022-06-01T14:18:04Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2025-04-14T07:43:57Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2022.66
ec_funded: 1
editor:
- first_name: Xavier
  full_name: Goaoc, Xavier
  last_name: Goaoc
- first_name: Michael
  full_name: Kerber, Michael
  last_name: Kerber
file:
- access_level: open_access
  checksum: b25ce40fade4ebc0bcaae176db4f5f1f
  content_type: application/pdf
  creator: dernst
  date_created: 2022-06-07T07:58:30Z
  date_updated: 2022-06-07T07:58:30Z
  file_id: '11437'
  file_name: 2022_LIPICs_Chambers.pdf
  file_size: 17580705
  relation: main_file
  success: 1
file_date_updated: 2022-06-07T07:58:30Z
has_accepted_license: '1'
intvolume: '       224'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 66:1-66:9
project:
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: 38th International Symposium on Computational Geometry
publication_identifier:
  isbn:
  - 978-3-95977-227-3
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
series_title: LIPIcs
status: public
title: 'A cautionary tale: Burning the medial axis is unstable'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 224
year: '2022'
...
---
_id: '11429'
abstract:
- lang: eng
  text: "This book constitutes the refereed proceedings of the 18th International
    Symposium on Web and Wireless Geographical Information Systems, W2GIS 2022, held
    in Konstanz, Germany, in April 2022.\r\nThe 7 full papers presented together with
    6 short papers in the volume were carefully reviewed and selected from 16 submissions.
    \ The papers cover topics that range from mobile GIS and Location-Based Services
    to Spatial Information Retrieval and Wireless Sensor Networks."
alternative_title:
- LNCS
article_processing_charge: No
citation:
  ama: 'Karimipour F, Storandt S, eds. <i>Web and Wireless Geographical Information
    Systems</i>. Vol 13238. 1st ed. Cham: Springer Nature; 2022. doi:<a href="https://doi.org/10.1007/978-3-031-06245-2">10.1007/978-3-031-06245-2</a>'
  apa: 'Karimipour, F., &#38; Storandt, S. (Eds.). (2022). <i>Web and Wireless Geographical
    Information Systems</i> (1st ed., Vol. 13238). Cham: Springer Nature. <a href="https://doi.org/10.1007/978-3-031-06245-2">https://doi.org/10.1007/978-3-031-06245-2</a>'
  chicago: 'Karimipour, Farid, and Sabine Storandt, eds. <i>Web and Wireless Geographical
    Information Systems</i>. 1st ed. Vol. 13238. Cham: Springer Nature, 2022. <a href="https://doi.org/10.1007/978-3-031-06245-2">https://doi.org/10.1007/978-3-031-06245-2</a>.'
  ieee: 'F. Karimipour and S. Storandt, Eds., <i>Web and Wireless Geographical Information
    Systems</i>, 1st ed., vol. 13238. Cham: Springer Nature, 2022.'
  ista: 'Karimipour F, Storandt S eds. 2022. Web and Wireless Geographical Information
    Systems 1st ed., Cham: Springer Nature, 153p.'
  mla: Karimipour, Farid, and Sabine Storandt, editors. <i>Web and Wireless Geographical
    Information Systems</i>. 1st ed., vol. 13238, Springer Nature, 2022, doi:<a href="https://doi.org/10.1007/978-3-031-06245-2">10.1007/978-3-031-06245-2</a>.
  short: F. Karimipour, S. Storandt, eds., Web and Wireless Geographical Information
    Systems, 1st ed., Springer Nature, Cham, 2022.
corr_author: '1'
date_created: 2022-06-02T05:40:53Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2024-10-09T21:02:30Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-031-06245-2
edition: '1'
editor:
- first_name: Farid
  full_name: Karimipour, Farid
  id: 2A2BCDC4-CF62-11E9-BE5E-3B1EE6697425
  last_name: Karimipour
  orcid: 0000-0001-6746-4174
- first_name: Sabine
  full_name: Storandt, Sabine
  last_name: Storandt
intvolume: '     13238'
language:
- iso: eng
month: '05'
oa_version: None
page: '153'
place: Cham
publication_identifier:
  eisbn:
  - '9783031062452'
  eissn:
  - 1611-3349
  isbn:
  - '9783031062445'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Web and Wireless Geographical Information Systems
type: book_editor
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13238
year: '2022'
...
---
_id: '11432'
abstract:
- lang: eng
  text: "This paper proposes a method for simulating liquids in large bodies of water
    by coupling together a water surface wave simulator with a 3D Navier-Stokes simulator.
    The surface wave simulation uses the equivalent sources method (ESM) to efficiently
    animate large bodies of water with precisely controllable wave propagation behavior.
    The 3D liquid simulator animates complex non-linear fluid behaviors like splashes
    and breaking waves using off-the-shelf simulators using FLIP or the level set
    method with semi-Lagrangian advection.\r\nWe combine the two approaches by using
    the 3D solver to animate localized non-linear behaviors, and the 2D wave solver
    to animate larger regions with linear surface physics. We use the surface motion
    from the 3D solver as boundary conditions for 2D surface wave simulator, and we
    use the velocity and surface heights from the 2D surface wave simulator as boundary
    conditions for the 3D fluid simulation. We also introduce a novel technique for
    removing visual artifacts caused by numerical errors in 3D fluid solvers: we use
    experimental data to estimate the artificial dispersion caused by the 3D solver
    and we then carefully tune the wave speeds of the 2D solver to match it, effectively
    eliminating any differences in wave behavior across the boundary. To the best
    of our knowledge, this is the first time such a empirically driven error compensation
    approach has been used to remove coupling errors from a physics simulator.\r\nOur
    coupled simulation approach leverages the strengths of each simulation technique,
    animating large environments with seamless transitions between 2D and 3D physics."
acknowledged_ssus:
- _id: ScienComp
acknowledgement: We wish to thank the anonymous reviewers and the members of the Visual
  Computing Group at IST Austria and MFX Team at INRIA for their valuable feedback.
  This research was supported by the Scientific Service Units (SSU) of IST Austria
  through resources provided by Scientific Computing. This project has received funding
  from the European Research Council (ERC) under the European Union’s Horizon 2020
  research and innovation programme under grant agreement No. 638176.
article_processing_charge: No
article_type: original
author:
- first_name: Camille
  full_name: Schreck, Camille
  id: 2B14B676-F248-11E8-B48F-1D18A9856A87
  last_name: Schreck
- first_name: Christopher J
  full_name: Wojtan, Christopher J
  id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
  last_name: Wojtan
  orcid: 0000-0001-6646-5546
citation:
  ama: Schreck C, Wojtan C. Coupling 3D liquid simulation with 2D wave propagation
    for large scale water surface animation using the equivalent sources method. <i>Computer
    Graphics Forum</i>. 2022;41(2):343-353. doi:<a href="https://doi.org/10.1111/cgf.14478">10.1111/cgf.14478</a>
  apa: Schreck, C., &#38; Wojtan, C. (2022). Coupling 3D liquid simulation with 2D
    wave propagation for large scale water surface animation using the equivalent
    sources method. <i>Computer Graphics Forum</i>. Wiley. <a href="https://doi.org/10.1111/cgf.14478">https://doi.org/10.1111/cgf.14478</a>
  chicago: Schreck, Camille, and Chris Wojtan. “Coupling 3D Liquid Simulation with
    2D Wave Propagation for Large Scale Water Surface Animation Using the Equivalent
    Sources Method.” <i>Computer Graphics Forum</i>. Wiley, 2022. <a href="https://doi.org/10.1111/cgf.14478">https://doi.org/10.1111/cgf.14478</a>.
  ieee: C. Schreck and C. Wojtan, “Coupling 3D liquid simulation with 2D wave propagation
    for large scale water surface animation using the equivalent sources method,”
    <i>Computer Graphics Forum</i>, vol. 41, no. 2. Wiley, pp. 343–353, 2022.
  ista: Schreck C, Wojtan C. 2022. Coupling 3D liquid simulation with 2D wave propagation
    for large scale water surface animation using the equivalent sources method. Computer
    Graphics Forum. 41(2), 343–353.
  mla: Schreck, Camille, and Chris Wojtan. “Coupling 3D Liquid Simulation with 2D
    Wave Propagation for Large Scale Water Surface Animation Using the Equivalent
    Sources Method.” <i>Computer Graphics Forum</i>, vol. 41, no. 2, Wiley, 2022,
    pp. 343–53, doi:<a href="https://doi.org/10.1111/cgf.14478">10.1111/cgf.14478</a>.
  short: C. Schreck, C. Wojtan, Computer Graphics Forum 41 (2022) 343–353.
corr_author: '1'
date_created: 2022-06-05T22:01:49Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2024-10-22T09:58:19Z
day: '01'
department:
- _id: ChWo
doi: 10.1111/cgf.14478
ec_funded: 1
external_id:
  isi:
  - '000802723900027'
intvolume: '        41'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://hal.archives-ouvertes.fr/hal-03641349/
month: '05'
oa: 1
oa_version: Submitted Version
page: 343-353
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '638176'
  name: 'Big Splash: Efficient Simulation of Natural Phenomena at Extremely Large
    Scales'
publication: Computer Graphics Forum
publication_identifier:
  eissn:
  - 1467-8659
  issn:
  - 0167-7055
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coupling 3D liquid simulation with 2D wave propagation for large scale water
  surface animation using the equivalent sources method
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2022'
...
---
_id: '11435'
abstract:
- lang: eng
  text: 'We introduce a new variant of quantitative Helly-type theorems: the minimal
    homothetic distance of the intersection of a family of convex sets to the intersection
    of a subfamily of a fixed size. As an application, we establish the following
    quantitative Helly-type result for the diameter. If $K$ is the intersection of
    finitely many convex bodies in $\mathbb{R}^d$, then one can select $2d$ of these
    bodies whose intersection is of diameter at most $(2d)^3{diam}(K)$. The best previously
    known estimate, due to Brazitikos [Bull. Hellenic Math. Soc., 62 (2018), pp. 19--25],
    is $c d^{11/2}$. Moreover, we confirm that the multiplicative factor $c d^{1/2}$
    conjectured by Bárány, Katchalski, and Pach [Proc. Amer. Math. Soc., 86 (1982),
    pp. 109--114] cannot be improved. The bounds above follow from our key result
    that concerns sparse approximation of a convex polytope by the convex hull of
    a well-chosen subset of its vertices: Assume that $Q \subset {\mathbb R}^d$ is
    a polytope whose centroid is the origin. Then there exist at most 2d vertices
    of $Q$ whose convex hull $Q^{\prime \prime}$ satisfies $Q \subset - 8d^3 Q^{\prime
    \prime}.$'
acknowledgement: "G.I. acknowledges the financial support from the Ministry of Educational
  and Science of the Russian Federation in the framework of MegaGrant no 075-15-2019-1926.
  M.N. was supported by the National Research, Development and Innovation Fund (NRDI)
  grants K119670 and\r\nKKP-133864 as well as the Bolyai Scholarship of the Hungarian
  Academy of Sciences and the New National Excellence Programme and the TKP2020-NKA-06
  program provided by the NRDI."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Grigory
  full_name: Ivanov, Grigory
  id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
  last_name: Ivanov
- first_name: Marton
  full_name: Naszodi, Marton
  last_name: Naszodi
citation:
  ama: 'Ivanov G, Naszodi M. A quantitative Helly-type theorem: Containment in a homothet.
    <i>SIAM Journal on Discrete Mathematics</i>. 2022;36(2):951-957. doi:<a href="https://doi.org/10.1137/21M1403308">10.1137/21M1403308</a>'
  apa: 'Ivanov, G., &#38; Naszodi, M. (2022). A quantitative Helly-type theorem: Containment
    in a homothet. <i>SIAM Journal on Discrete Mathematics</i>. Society for Industrial
    and Applied Mathematics. <a href="https://doi.org/10.1137/21M1403308">https://doi.org/10.1137/21M1403308</a>'
  chicago: 'Ivanov, Grigory, and Marton Naszodi. “A Quantitative Helly-Type Theorem:
    Containment in a Homothet.” <i>SIAM Journal on Discrete Mathematics</i>. Society
    for Industrial and Applied Mathematics, 2022. <a href="https://doi.org/10.1137/21M1403308">https://doi.org/10.1137/21M1403308</a>.'
  ieee: 'G. Ivanov and M. Naszodi, “A quantitative Helly-type theorem: Containment
    in a homothet,” <i>SIAM Journal on Discrete Mathematics</i>, vol. 36, no. 2. Society
    for Industrial and Applied Mathematics, pp. 951–957, 2022.'
  ista: 'Ivanov G, Naszodi M. 2022. A quantitative Helly-type theorem: Containment
    in a homothet. SIAM Journal on Discrete Mathematics. 36(2), 951–957.'
  mla: 'Ivanov, Grigory, and Marton Naszodi. “A Quantitative Helly-Type Theorem: Containment
    in a Homothet.” <i>SIAM Journal on Discrete Mathematics</i>, vol. 36, no. 2, Society
    for Industrial and Applied Mathematics, 2022, pp. 951–57, doi:<a href="https://doi.org/10.1137/21M1403308">10.1137/21M1403308</a>.'
  short: G. Ivanov, M. Naszodi, SIAM Journal on Discrete Mathematics 36 (2022) 951–957.
date_created: 2022-06-05T22:01:50Z
date_published: 2022-04-11T00:00:00Z
date_updated: 2023-10-18T06:58:03Z
day: '11'
department:
- _id: UlWa
doi: 10.1137/21M1403308
external_id:
  arxiv:
  - '2103.04122'
  isi:
  - '000793158200002'
intvolume: '        36'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2103.04122'
month: '04'
oa: 1
oa_version: Preprint
page: 951-957
publication: SIAM Journal on Discrete Mathematics
publication_identifier:
  issn:
  - 0895-4801
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'A quantitative Helly-type theorem: Containment in a homothet'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2022'
...
