---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '22372'
abstract:
- lang: eng
text: Neurons acquire polarity by specifying one neurite as the axon, whereas the
others become dendrites. But how this fundamental asymmetry is established remains
unclear1. Neuronal polarization has been thought to rely primarily on growth cones
that sense external cues2. Here we show that growth cones alone do not direct
this process and that the soma acts as a central organizer of neuronal polarization.
Using live imaging and genetic loss-of-function approaches in vivo, combined with
optogenetic control and local cytoskeletal perturbations in cultured neurons,
we uncover a soma-initiated oscillatory program that primes axon selection. Periodic
actin branching that depends on the actin-related protein 2/3 (ARP2/3) complex
at the soma remodels a global actomyosin network, thereby generating an actin
wave that retracts neurites before propagating into a single neurite tip. Exposure
to this wave relaxes local actomyosin contractility, which drives a transient
microtubule-based protrusion and biases this neurite towards axon fate. As the
cell exits this oscillatory stage, this neurite can overcome global inhibition
and extend independently of ARP2/3, whereas actomyosin activity suppresses axon
formation in the remaining neurites so that they subsequently become dendrites.
This soma-driven mechanism ensures the emergence of a single axon independent
of environmental cues and underpins the unidirectional information flow in neuronal
circuits.
acknowledgement: 'We thank O. Gruss, E. Handley, H. Herzel, A. Kania, A. Koseska,
E. Kiermaier, D. Manstein, C. Niessen, K. Rottner, J. Schiweck, G. Tavosanis, D. Wachten,
R. Wedlich-Söldner and W. Witke for critically reading and discussing the manuscript;
C. Günter and V. Štimac for feedback on data presentation; B. Randel, J. Benner,
L. Meyn and A.-T. Pham for technical assistance; L. M. Neußer, K. Herz, K. Van-De-Kamp
and M. Diwo for their support on mice maintenance; H. Fried, I. Koenig, S. Filser
and Y. Fu for their technical support on experimental setup; and M. Aghabeig for
writing the Fiji macro scripts. C.H.C. was a Human Frontier Science Program Long-term
Postdoctoral Fellow (LT000100/2013). F.B. is supported by the Deutsches Zentrum
für Neurodegenerative Erkrankungen (DZNE), the International Foundation for Research
in Paraplegia, Wings for Life, ERANET AXON REPAIR, ERANET RATER SCI and the Chan–Zuckerberg
Initiative (CZI). F.B. is also funded by the Deutsche Forschungsgemeinschaft (DFG,
German Research Foundation)–Project-ID 227953431–SFB 1089, SFB 1690 as well as SFB
1158 and SPP 2395. F.B. is a member of the excellence cluster ImmunoSensation2 (EXC2151–390873048)
and the iBehave NRW network. F.B. is a recipient of the Roger de Spoelberch Prize.
F.K.M.S. acknowledges support from Austrian Science Fund (FWF): P33367. A.N. is
supported by JSPS KAKENHI (grant numbers 18H02410 and 21H02440). Open access funding
provided by Deutsches Zentrum für Neurodegenerative Erkrankungen e.V. (DZNE) in
der Helmholtz-Gemeinschaft.'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Tien Chen
full_name: Lin, Tien Chen
last_name: Lin
- first_name: Charlotte H.
full_name: Coles, Charlotte H.
last_name: Coles
- first_name: Eissa
full_name: Alfadil, Eissa
last_name: Alfadil
- first_name: Florian
full_name: Fäßler, Florian
id: 404F5528-F248-11E8-B48F-1D18A9856A87
last_name: Fäßler
orcid: 0000-0001-7149-769X
- first_name: Andreas
full_name: Husch, Andreas
last_name: Husch
- first_name: Sebastian
full_name: Dupraz, Sebastian
last_name: Dupraz
- first_name: Thorben
full_name: Pietralla, Thorben
last_name: Pietralla
- first_name: Akihiro
full_name: Narita, Akihiro
last_name: Narita
- first_name: Max
full_name: Schelski, Max
last_name: Schelski
- first_name: Kevin C.
full_name: Flynn, Kevin C.
last_name: Flynn
- first_name: Sina
full_name: Stern, Sina
last_name: Stern
- first_name: Christoph
full_name: Möhl, Christoph
last_name: Möhl
- first_name: Brett J.
full_name: Hilton, Brett J.
last_name: Hilton
- first_name: Franz
full_name: Vauti, Franz
last_name: Vauti
- first_name: Hans Henning
full_name: Arnold, Hans Henning
last_name: Arnold
- first_name: Florian Km
full_name: Schur, Florian Km
id: 48AD8942-F248-11E8-B48F-1D18A9856A87
last_name: Schur
orcid: 0000-0003-4790-8078
- first_name: Frank
full_name: Bradke, Frank
last_name: Bradke
citation:
ama: Lin TC, Coles CH, Alfadil E, et al. An intrinsic cytoskeletal oscillator establishes
neuronal polarity. Nature. 2026. doi:10.1038/s41586-026-10755-6
apa: Lin, T. C., Coles, C. H., Alfadil, E., Fäßler, F., Husch, A., Dupraz, S., …
Bradke, F. (2026). An intrinsic cytoskeletal oscillator establishes neuronal polarity.
Nature. Springer Nature. https://doi.org/10.1038/s41586-026-10755-6
chicago: Lin, Tien Chen, Charlotte H. Coles, Eissa Alfadil, Florian Fäßler, Andreas
Husch, Sebastian Dupraz, Thorben Pietralla, et al. “An Intrinsic Cytoskeletal
Oscillator Establishes Neuronal Polarity.” Nature. Springer Nature, 2026.
https://doi.org/10.1038/s41586-026-10755-6.
ieee: T. C. Lin et al., “An intrinsic cytoskeletal oscillator establishes
neuronal polarity,” Nature. Springer Nature, 2026.
ista: Lin TC, Coles CH, Alfadil E, Fäßler F, Husch A, Dupraz S, Pietralla T, Narita
A, Schelski M, Flynn KC, Stern S, Möhl C, Hilton BJ, Vauti F, Arnold HH, Schur
FK, Bradke F. 2026. An intrinsic cytoskeletal oscillator establishes neuronal
polarity. Nature.
mla: Lin, Tien Chen, et al. “An Intrinsic Cytoskeletal Oscillator Establishes Neuronal
Polarity.” Nature, Springer Nature, 2026, doi:10.1038/s41586-026-10755-6.
short: T.C. Lin, C.H. Coles, E. Alfadil, F. Fäßler, A. Husch, S. Dupraz, T. Pietralla,
A. Narita, M. Schelski, K.C. Flynn, S. Stern, C. Möhl, B.J. Hilton, F. Vauti,
H.H. Arnold, F.K. Schur, F. Bradke, Nature (2026).
das_tickbox: '1'
dataavailabilitystatement: The raw data of the representative images have been deposited
into Zenodo (https://doi.org/10.5281/zenodo.20118606)99. Owing to the large file
size of the raw image data and the processed data used in the analyses that generated
the graphs, we archived the image files in the read-only file archive at the DZNE
institute. We provide raw data files upon request. The request can be directed to
and will be fulfilled by the lead contact F.B. Source data are provided with this
paper. The custom ImageJ macro used for generating kymographs, extracting neurite
tip positions and protein intensities is available at GitHub (https://github.com/darkbreaker0/IJ_NeuriteGrowthScript)
and Zenodo (https://doi.org/10.5281/zenodo.20118606)99. The custom R and Python
scripts used in the study are available at GitHub (https://github.com/darkbreaker0/Arp3_neuronal_polarization_2026)
and Zenodo (https://doi.org/10.5281/zenodo.20118606)99. The code used for polarity
determination of the actin filament in tomograms is available at Zenodo (https://doi.org/10.5281/zenodo.20081075)93.
date_created: 2026-07-19T22:01:48Z
date_published: 2026-07-08T00:00:00Z
date_updated: 2026-07-20T14:18:10Z
day: '08'
ddc:
- '570'
department:
- _id: FlSc
doi: 10.1038/s41586-026-10755-6
external_id:
pmid:
- '42420447'
fulldoi: https://doi.org/10.1038/s41586-026-10755-6
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1038/s41586-026-10755-6
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 9B954C5C-BA93-11EA-9121-9846C619BF3A
grant_number: P33367
name: Structure and isoform diversity of the Arp2/3 complex
publication: Nature
publication_identifier:
eissn:
- 1476-4687
issn:
- 0028-0836
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: An intrinsic cytoskeletal oscillator establishes neuronal polarity
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
_id: '22255'
abstract:
- lang: eng
text: "This thesis studies spectral rigidity and nonrigidity phenomena in dynamical
systems. The central question is whether a dynamical system can be determined,
up to a natural conjugacy, from its spectrum. We consider three related spectra:
the length spectrum, the action spectrum, and the Lyapunov spectrum.\r\n\r\nThe
first part of the thesis concerns Liouville metrics on the two-dimensional torus.
It is a long-standing folklore conjecture that Liouville metrics are the only
integrable metrics on the torus. We prove a length-spectral rigidity result for
linear conformal deformations of Liouville metrics by exploiting the dynamical
properties of the rational tori -- analogues of the resonant convex caustics in
billiards. We also establish a complementary classification result showing that
marked-length-isospectral Liouville metrics are characterized by rearrangements
of the one-dimensional functions appearing in their conformal factors, generalizing
a theorem of Abbondandolo-Mazzucchelli. In particular, the second result gives
nonrigidity examples within the class of Liouville metrics.\r\n\r\nThe second
part of the thesis studies the standard map from the viewpoint of action and Lyapunov
spectra. We construct nontrivial deformations of the standard map which preserve
the symplectic actions (respectively, the Lyapunov exponents) of infinitely many
periodic orbits accumulating on an invariant curve. The proof combines a resonant
normal form construction with Picard iteration schemes to obtain a sequence of
periodic orbits accumulating on an invariant curve with a Liouville rotation number.
Within the resonant normal forms we capture the dependence of these periodic orbits
on the resonant Fourier coefficients of the dynamics on the invariant curve and,
using the contraction mapping principle, obtain a suitable deformation achieving
the prescribed spectral data associated with this sequence of orbits. The result
can be viewed as a symplectic twist-map analogue of a length-spectral nonrigidity
phenomenon for Riemannian manifolds and convex billiards, and it motivates the
existence problem for similar 'partially length-isospectral' deformations of strictly
convex billiard tables.\r\n"
acknowledged_ssus:
- _id: E-Lib
- _id: CampIT
acknowledgement: "The financial support of the ERC grant SPERIG #885707 is gratefully
acknowledged.\r\n"
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Yunzhe
full_name: Li, Yunzhe
id: 41cb05d3-f128-11eb-9611-e4e2b3cfba31
last_name: Li
citation:
ama: Li Y. Spectral rigidity and nonrigidity of dynamical systems. 2026. doi:10.15479/AT-ISTA-22255
apa: Li, Y. (2026). Spectral rigidity and nonrigidity of dynamical systems.
Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-22255
chicago: Li, Yunzhe. “Spectral Rigidity and Nonrigidity of Dynamical Systems.” Institute
of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-22255.
ieee: Y. Li, “Spectral rigidity and nonrigidity of dynamical systems,” Institute
of Science and Technology Austria, 2026.
ista: Li Y. 2026. Spectral rigidity and nonrigidity of dynamical systems. Institute
of Science and Technology Austria.
mla: Li, Yunzhe. Spectral Rigidity and Nonrigidity of Dynamical Systems.
Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-22255.
short: Y. Li, Spectral Rigidity and Nonrigidity of Dynamical Systems, Institute
of Science and Technology Austria, 2026.
corr_author: '1'
date_created: 2026-07-08T12:44:31Z
date_published: 2026-07-11T00:00:00Z
date_updated: 2026-07-20T14:58:23Z
day: '11'
ddc:
- '515'
degree_awarded: PhD
department:
- _id: GradSch
- _id: VaKa
doi: 10.15479/AT-ISTA-22255
doi_confirm: '1'
ec_funded: 1
file:
- access_level: open_access
checksum: 8201cb5a427656a41828ecde8a85c04b
content_type: application/pdf
creator: yli
date_created: 2026-07-14T10:48:45Z
date_updated: 2026-07-14T10:48:45Z
file_id: '22337'
file_name: 2026_Li_Yunzhe_Thesis.pdf
file_size: 1260717
relation: main_file
- access_level: closed
checksum: 19ee8461ed77f5b7980fc9461f778b6f
content_type: application/x-zip-compressed
creator: yli
date_created: 2026-07-14T11:07:18Z
date_updated: 2026-07-20T14:00:33Z
file_id: '22339'
file_name: 2026_Li_Yunzhe_Thesis.zip
file_size: 418752
relation: source_file
file_date_updated: 2026-07-20T14:00:33Z
fulldoi: https://doi.org/10.15479/AT-ISTA-22255
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '131'
project:
- _id: 9B8B92DE-BA93-11EA-9121-9846C619BF3A
call_identifier: H2020
grant_number: '885707'
name: Spectral rigidity and integrability for billiards and geodesic flows
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '22340'
relation: part_of_dissertation
status: public
- id: '22341'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Vadim
full_name: Kaloshin, Vadim
id: FE553552-CDE8-11E9-B324-C0EBE5697425
last_name: Kaloshin
orcid: 0000-0002-6051-2628
title: Spectral rigidity and nonrigidity of dynamical systems
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '22371'
abstract:
- lang: eng
text: Amoeboid cell migration is key to efficient T cell immunity. Spatial polarization
of organelles within cells, including endo-lysosomes, is a prerequisite of migration.
However, how ultrastructural polarization is linked to the signaling requirements
governing T cell migration remains unknown. Here we show that signaling molecules
generated by endo-lysosome-localized kinases regulate velocity of amoeboid migration.
Specifically, imaging of T cells identifies accumulation of endo-lysosomes decorated
with the lipid kinases VPS34–PIKfyve at the uropod of polarized cells. Activity
of VPS34 and PIKfyve regulates speed, but not directedness, of migrating T cells.
Mechanistically, PI(3,5)P2 generated by the sequential action of VPS34 and PIKfyve,
mediates Ca2+ efflux from lysosomes via the mucolipin TRP cation channel 1 (TRPML1),
thus controlling activity of myosin IIA and hence the generation of propulsive
force through retrograde actin flow. The VPS34–PIKfyve kinases also regulate velocity
of myeloid cells, as well as of the amoeba Dictyostelium discoideum – establishing
the axis as an evolutionarily conserved speed control system of amoeboid cell
migration.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: We thank the microscopy core facility of the Department of Biomedicine
at the University and University Hospital of Basel for their technical support.
This research was technically supported by the Scientific Service Units (SSU) of
ISTA through resources provided by the Imaging & Optics Facility (IOF) and the Lab
Support Facility (LSF). CH was supported by the Swiss National Science Foundation
(SNSF) (310030B_201277; 310030_192677; FZEB-0-180487), the ZBF Program Award 2025
(Hans Zäslin Bustany Foundation), and the Novartis Foundation for Medical-Biological
Research (NFMBR) (#23A070). PD was supported by the Swiss Academy for Medical Sciences
(SAMW) and SNSF (183980, 225441), the NFMBR (#23A070), AlumniMedizin Basel, and
the Freiwillige Akademische Gesellschaft Basel. DFL was supported by the SNSF (220205).
Open access funding provided by University of Basel.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Philippe G
full_name: Dehio, Philippe G
id: b769738e-a003-11ee-b1b8-9030316e0d59
last_name: Dehio
- first_name: Céline
full_name: Michard, Céline
last_name: Michard
- first_name: Juan Carlos
full_name: Yam-Puc, Juan Carlos
last_name: Yam-Puc
- first_name: Adrià Arnau
full_name: Martí I Líndez, Adrià Arnau
last_name: Martí I Líndez
- first_name: Anett
full_name: Jandke, Anett
last_name: Jandke
- first_name: Gunhild
full_name: Unterstab, Gunhild
last_name: Unterstab
- first_name: Lucien
full_name: Fabre, Lucien
last_name: Fabre
- first_name: Loïc
full_name: Sauteur, Loïc
last_name: Sauteur
- first_name: Marc
full_name: Artinger, Marc
last_name: Artinger
- first_name: Daniel F.
full_name: Legler, Daniel F.
last_name: Legler
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
- first_name: Thorsten
full_name: Schaefer, Thorsten
last_name: Schaefer
- first_name: Matthias P.
full_name: Wymann, Matthias P.
last_name: Wymann
- first_name: Klaus
full_name: Okkenhaug, Klaus
last_name: Okkenhaug
- first_name: Thierry
full_name: Soldati, Thierry
last_name: Soldati
- first_name: Matthias
full_name: Mehling, Matthias
id: 3C23B994-F248-11E8-B48F-1D18A9856A87
last_name: Mehling
orcid: 0000-0001-8599-1226
- first_name: Christoph
full_name: Hess, Christoph
last_name: Hess
citation:
ama: Dehio PG, Michard C, Yam-Puc JC, et al. A conserved VPS34-PIKfyve-TRPML1-myosin
II axis regulates the speed of amoeboid cell migration. EMBO Reports. 2026.
doi:10.1038/s44319-026-00861-x
apa: Dehio, P. G., Michard, C., Yam-Puc, J. C., Martí I Líndez, A. A., Jandke, A.,
Unterstab, G., … Hess, C. (2026). A conserved VPS34-PIKfyve-TRPML1-myosin II axis
regulates the speed of amoeboid cell migration. EMBO Reports. Springer
Nature. https://doi.org/10.1038/s44319-026-00861-x
chicago: Dehio, Philippe G, Céline Michard, Juan Carlos Yam-Puc, Adrià Arnau Martí
I Líndez, Anett Jandke, Gunhild Unterstab, Lucien Fabre, et al. “A Conserved VPS34-PIKfyve-TRPML1-Myosin
II Axis Regulates the Speed of Amoeboid Cell Migration.” EMBO Reports.
Springer Nature, 2026. https://doi.org/10.1038/s44319-026-00861-x.
ieee: P. G. Dehio et al., “A conserved VPS34-PIKfyve-TRPML1-myosin II axis
regulates the speed of amoeboid cell migration,” EMBO Reports. Springer
Nature, 2026.
ista: Dehio PG, Michard C, Yam-Puc JC, Martí I Líndez AA, Jandke A, Unterstab G,
Fabre L, Sauteur L, Artinger M, Legler DF, Sixt MK, Schaefer T, Wymann MP, Okkenhaug
K, Soldati T, Mehling M, Hess C. 2026. A conserved VPS34-PIKfyve-TRPML1-myosin
II axis regulates the speed of amoeboid cell migration. EMBO Reports.
mla: Dehio, Philippe G., et al. “A Conserved VPS34-PIKfyve-TRPML1-Myosin II Axis
Regulates the Speed of Amoeboid Cell Migration.” EMBO Reports, Springer
Nature, 2026, doi:10.1038/s44319-026-00861-x.
short: P.G. Dehio, C. Michard, J.C. Yam-Puc, A.A. Martí I Líndez, A. Jandke, G.
Unterstab, L. Fabre, L. Sauteur, M. Artinger, D.F. Legler, M.K. Sixt, T. Schaefer,
M.P. Wymann, K. Okkenhaug, T. Soldati, M. Mehling, C. Hess, EMBO Reports (2026).
das_tickbox: '1'
dataavailabilitystatement: "The analysis workflow to quantify vesicle localization
can be accessed on GitHub (https://github.com/loicsauteur/vesicle-analysis, version
0.1.1).\r\n\r\nThe source data of this paper are collected in the following database
record: biostudies:S-SCDT-10_1038-S44319-026-00861-x."
date_created: 2026-07-19T22:01:48Z
date_published: 2026-07-07T00:00:00Z
date_updated: 2026-07-20T14:28:59Z
day: '07'
department:
- _id: MiSi
doi: 10.1038/s44319-026-00861-x
external_id:
pmid:
- '42414599'
fulldoi: https://doi.org/10.1038/s44319-026-00861-x
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1038/s44319-026-00861-x
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: EMBO Reports
publication_identifier:
eissn:
- 1469-3178
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: A conserved VPS34-PIKfyve-TRPML1-myosin II axis regulates the speed of amoeboid
cell migration
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_type: closed access
_id: '22366'
abstract:
- lang: eng
text: Gravitropism is a fundamental adaptive response in plants that enables directional
growth to optimize resource acquisition. In this study, we employed forward genetic
screening to identify Arabidopsis mutants with defective hypocotyl gravitropism
and isolated the short and agravitropic hypocotyl in dark1 (sad1) mutant, which
carries a point mutation (G110E) in the SAC1 gene encoding a phosphoinositide
phosphatase. Deficiency of SAC1 disrupted gravity-induced polar localization of
PIN3 in endodermal cells, impairing auxin redistribution and leading to hypocotyl
gravitropism defects. Subcellular localization analysis revealed that SAC1 is
partially localized to the PVC/tonoplast and participates in late endosomal trafficking.
The sac1 mutation leads to abnormal vacuolar morphology, which is associated with
defects in amyloplast sedimentation during the gravitropic response in Arabidopsis
shoots. We further revealed that SAC1 interacts with GRV2, a key regulator of
the late endocytic pathway, and that both proteins cooperatively regulate shoot
gravitropism. In summary, this study identified SAC1 as a regulator of shoot gravitropism,
revealing its important role in modulating vacuolar homeostasis, amyloplast sedimentation,
PIN3 trafficking, and auxin distribution. These findings provide insights into
the molecular mechanisms linking membrane transport to environmental adaptation
in plants.
acknowledgement: We acknowledge Prof. Dolf Weijers (Wageningen University), Prof.Karin
Schumacher (Heidelberg University), Prof. Yohann Boutt ´e(Universit ´e de Bordeaux),
and Prof. Jinbo Shen (Zhejiang A&FUniversity) for providing published plasmids and
Arabidopsislines. We thank Dr. Gergely Moln ´ar (ISTA) for help with NGS dataanalysis,
and Prof. Jianru Zuo (IGDB, CAS), Prof. Chengbin Xiang(USTC), and Prof. Zhong Zhao
(USTC) for critical comments onthe manuscript. We thank the staff members of the
Mass Spec-trometry System at the National Facility for Protein Science inShanghai
(NFPS), Zhangjiang Lab, China for providing technicalsupport and assistance in data
collection and analysis. This workwas supported by grants from the National Natural
Science Foun-dation of China (32570366, and 32321001 to ST), the Natural Sci-ence
Foundation of Anhui Province (2508085QC070 to MK), theFundamental Research Funds
for the Central Universities(WK9100250095 to MK, and WK9100000021 to ST), the ForestryBureau
of Anhui Province (AHLYJBGS-2024-01 to ST), the Centerfor Advanced Interdisciplinary
Science and Biomedicine of IHM,Division of Life Sciences and Medicine, University
of Science andTechnology of China (QYPY20220012 to ST), the USTC ResearchFunds of
the Double First-Class Initiative (YD9100002016 to ST),and start-up funding from
the University of Science and Technol-ogy of China and the Chinese Academy of Sciences(GG9100007007,
KY9100000026, KY9100000051, XKTS-202591014,XKTS-2026910122, and KJ2070000079 to
ST).
article_number: e71042
article_processing_charge: No
article_type: original
author:
- first_name: Lianghanxiao
full_name: Sun, Lianghanxiao
last_name: Sun
- first_name: Wenxin
full_name: Jia, Wenxin
last_name: Jia
- first_name: Yanbo
full_name: Mao, Yanbo
last_name: Mao
- first_name: Xin
full_name: Li, Xin
last_name: Li
- first_name: Mengjuan
full_name: Kong, Mengjuan
last_name: Kong
- first_name: Ji
full_name: She, Ji
last_name: She
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Shutang
full_name: Tan, Shutang
id: 2DE75584-F248-11E8-B48F-1D18A9856A87
last_name: Tan
orcid: 0000-0002-0471-8285
citation:
ama: Sun L, Jia W, Mao Y, et al. Regulation of shoot gravitropism and branching
angle by the GRV2-SAC1 axis in Arabidopsis. The Plant Journal. 2026;127(1).
doi:10.1111/tpj.71042
apa: Sun, L., Jia, W., Mao, Y., Li, X., Kong, M., She, J., … Tan, S. (2026). Regulation
of shoot gravitropism and branching angle by the GRV2-SAC1 axis in Arabidopsis.
The Plant Journal. Wiley. https://doi.org/10.1111/tpj.71042
chicago: Sun, Lianghanxiao, Wenxin Jia, Yanbo Mao, Xin Li, Mengjuan Kong, Ji She,
Jiří Friml, and Shutang Tan. “Regulation of Shoot Gravitropism and Branching Angle
by the GRV2-SAC1 Axis in Arabidopsis.” The Plant Journal. Wiley, 2026.
https://doi.org/10.1111/tpj.71042.
ieee: L. Sun et al., “Regulation of shoot gravitropism and branching angle
by the GRV2-SAC1 axis in Arabidopsis,” The Plant Journal, vol. 127, no.
1. Wiley, 2026.
ista: Sun L, Jia W, Mao Y, Li X, Kong M, She J, Friml J, Tan S. 2026. Regulation
of shoot gravitropism and branching angle by the GRV2-SAC1 axis in Arabidopsis.
The Plant Journal. 127(1), e71042.
mla: Sun, Lianghanxiao, et al. “Regulation of Shoot Gravitropism and Branching Angle
by the GRV2-SAC1 Axis in Arabidopsis.” The Plant Journal, vol. 127, no.
1, e71042, Wiley, 2026, doi:10.1111/tpj.71042.
short: L. Sun, W. Jia, Y. Mao, X. Li, M. Kong, J. She, J. Friml, S. Tan, The Plant
Journal 127 (2026).
das_tickbox: '1'
dataavailabilitystatement: Biological materials (seeds, plasmids) are available upon
request from ST (sttan@ustc.edu.cn). The data that support the findings of this study
are available on request from the corresponding author. The data are not publicly
available due to privacy or ethical restrictions.
date_created: 2026-07-19T22:01:47Z
date_published: 2026-07-01T00:00:00Z
date_updated: 2026-07-20T13:53:44Z
day: '01'
department:
- _id: JiFr
doi: 10.1111/tpj.71042
external_id:
pmid:
- '42438075'
fulldoi: https://doi.org/10.1111/tpj.71042
intvolume: ' 127'
issue: '1'
keyword:
- auxin
- SAC1
- GRV2
- PIN3
- vacuole
- gravitropism
- Arabidopsis
language:
- iso: eng
month: '07'
oa_version: None
pmid: 1
publication: The Plant Journal
publication_identifier:
eissn:
- 1365-313X
issn:
- 0960-7412
publication_status: published
publisher: Wiley
quality_controlled: '1'
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Regulation of shoot gravitropism and branching angle by the GRV2-SAC1 axis
in Arabidopsis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 127
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '22368'
abstract:
- lang: eng
text: "We study simple dynamics in the population protocol model, in\r\nwhich \U0001D45B
agents start with totally ordered initial opinions \U0001D4651, \U0001D4652, .
. . ,\r\n\U0001D465\U0001D45B and, in each round, a randomly chosen agent changes
its opinion\r\nas a function of the opinion of other randomly chosen agents. Such\r\ndynamics
often converge to consensus on a single fixation value \U0001D44Bˆ.\r\nThis paper
asks how to control the distribution of \U0001D44Bˆ as a randomised\r\nchoice
among the initial opinions by designing suitable simple\r\ndynamics. Writing the
sorted initial values as \U0001D465(1) ≤ · · · ≤ \U0001D465(\U0001D45B)\r\n,\r\nwe
design two protocols that realise natural target laws over order\r\nstatistics.\r\nFirst,
for a parameter \U0001D45D ∈ (0, 1), our geometric protocol biases\r\ntoward larger
opinions and satisfies P\r\n\r\n\U0001D44Bˆ = \U0001D465(\U0001D458)\r\n\r\n∝
\U0001D45D\r\n\U0001D45B−\U0001D458\r\n, for\r\n\U0001D458 = 1, . . . , \U0001D45B.
Equivalently, P\r\n\r\n\U0001D44Bˆ = \U0001D465(\U0001D458)\r\n\r\n= (1 − \U0001D45D)\U0001D45D\r\n\U0001D45B−\U0001D458\r\n/(1
− \U0001D45D\r\n\U0001D45B\r\n).\r\nSecond, our binomial protocol assigns a shifted
binomial law to the\r\nranks in ascending order: if \U0001D43E −1 ∼ Bin(\U0001D45B−1,
1−\U0001D45D), then \U0001D44Bˆ = \U0001D465(\U0001D43E)\r\n,\r\ni.e., P\r\n\r\n\U0001D44Bˆ
= \U0001D465(\U0001D458)\r\n\r\n=\r\n\U0001D45B−1\r\n\U0001D458−1\r\n\x01\r\n\U0001D45D\r\n\U0001D45B−\U0001D458\r\n(1
− \U0001D45D)\r\n\U0001D458−1\r\n, for \U0001D458 = 1, . . . , \U0001D45B.\r\nApplications
of this include computing the Top-\U0001D458 values for\r\nsmall \U0001D458 on
general interaction graphs. A central contribution of\r\nthis work is that, in
contrast to most population protocols, we can\r\ncharacterise the fixation distribution
in closed form. This is enabled\r\nby a novel analysis technique, which also yields
applications: we\r\nderive new results for the Median protocol that extend the
state of\r\nthe art."
acknowledgement: "This work has been supported by the AID INRIA-DGA project\r\nn°2023000872
“BioSwarm”, the French government National Research Agency (ANR) through the UCA
JEDI (ANR-15-IDEX-01),\r\nthe EUR DS4H (ANR-17-EURE-004) and the 3IA Cote d’Azur
Investments ANR-23-IACL-0001, and EPSRC grant EP/W005573/1"
article_processing_charge: No
author:
- first_name: Niccolò
full_name: D'Archivio, Niccolò
last_name: D'Archivio
- first_name: Hind
full_name: Almahmoud, Hind
last_name: Almahmoud
- first_name: Emanuele
full_name: Natale, Emanuele
last_name: Natale
- first_name: Frederik
full_name: Mallmann-Trenn, Frederik
id: 68748c44-84d5-11f1-b4f6-ca083374e553
last_name: Mallmann-Trenn
citation:
ama: 'D’Archivio N, Almahmoud H, Natale E, Mallmann-Trenn F. Order statistics in
population protocols via simple dynamics. In: Proceedings of the Annual ACM
Symposium on Principles of Distributed Computing. Association for Computing
Machinery; 2026:425-436. doi:10.1145/3796701.3815922'
apa: 'D’Archivio, N., Almahmoud, H., Natale, E., & Mallmann-Trenn, F. (2026).
Order statistics in population protocols via simple dynamics. In Proceedings
of the Annual ACM Symposium on Principles of Distributed Computing (pp. 425–436).
Egham, United Kingdom: Association for Computing Machinery. https://doi.org/10.1145/3796701.3815922'
chicago: D’Archivio, Niccolò, Hind Almahmoud, Emanuele Natale, and Frederik Mallmann-Trenn.
“Order Statistics in Population Protocols via Simple Dynamics.” In Proceedings
of the Annual ACM Symposium on Principles of Distributed Computing, 425–36.
Association for Computing Machinery, 2026. https://doi.org/10.1145/3796701.3815922.
ieee: N. D’Archivio, H. Almahmoud, E. Natale, and F. Mallmann-Trenn, “Order statistics
in population protocols via simple dynamics,” in Proceedings of the Annual
ACM Symposium on Principles of Distributed Computing, Egham, United Kingdom,
2026, pp. 425–436.
ista: 'D’Archivio N, Almahmoud H, Natale E, Mallmann-Trenn F. 2026. Order statistics
in population protocols via simple dynamics. Proceedings of the Annual ACM Symposium
on Principles of Distributed Computing. PODC: Symposium on Principles of Distributed
Computing, 425–436.'
mla: D’Archivio, Niccolò, et al. “Order Statistics in Population Protocols via Simple
Dynamics.” Proceedings of the Annual ACM Symposium on Principles of Distributed
Computing, Association for Computing Machinery, 2026, pp. 425–36, doi:10.1145/3796701.3815922.
short: N. D’Archivio, H. Almahmoud, E. Natale, F. Mallmann-Trenn, in:, Proceedings
of the Annual ACM Symposium on Principles of Distributed Computing, Association
for Computing Machinery, 2026, pp. 425–436.
conference:
end_date: 2026-07-10
location: Egham, United Kingdom
name: 'PODC: Symposium on Principles of Distributed Computing'
start_date: 2026-07-06
corr_author: '1'
das_tickbox: '0'
date_created: 2026-07-19T22:01:47Z
date_published: 2026-07-01T00:00:00Z
date_updated: 2026-07-21T07:34:49Z
day: '01'
ddc:
- '000'
department:
- _id: MoHe
doi: 10.1145/3796701.3815922
file:
- access_level: open_access
checksum: e8208393a016d8e71d7b26c402045488
content_type: application/pdf
creator: dernst
date_created: 2026-07-21T07:31:29Z
date_updated: 2026-07-21T07:31:29Z
file_id: '22379'
file_name: 2026_ACMPODC_dArchivio.pdf
file_size: 824239
relation: main_file
success: 1
file_date_updated: 2026-07-21T07:31:29Z
fulldoi: https://doi.org/10.1145/3796701.3815922
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 425-436
publication: Proceedings of the Annual ACM Symposium on Principles of Distributed
Computing
publication_identifier:
isbn:
- '9798400725128'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Order statistics in population protocols via simple dynamics
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '22367'
abstract:
- lang: eng
text: "We study the Undecided-State Dynamics (USD), a fundamental consensus process
in which each vertex holds one of k decided opinions or the undecided state. We
consider both the gossip model and the population protocol model. Prior work established
tight bounds on the consensus time of this process only for the regime \r\nk\r\n=\r\nO\r\n(\r\nn\r\n/\r\n(\r\nlog\r\n\r\nn\r\n)\r\n2\r\n)\r\n
(for the population protocol model) and k = O((n/log n)1/3) (for the gossip model),
often under restrictive assumptions on the initial configuration.\r\nIn this paper,
we obtain the first consensus-time guarantees for USD that hold for arbitrary
2 ≤ k ≤ n and for arbitrary initial configurations in both the gossip model and
the population protocol model. In the gossip model, USD reaches consensus within
\r\nO\r\n~\r\n(\r\nmin\r\n{\r\nk\r\n,\r\nn\r\n}\r\n)\r\n synchronous rounds with
probability 1 - p⊥ - n-c, where p⊥ is the gossip-specific probability of collapsing
to the all-undecided state in the first round. In the population protocol model,
USD reaches consensus within \r\nO\r\n~\r\n(\r\nmin\r\n{\r\nk\r\nn\r\n,\r\nn\r\n3\r\n/\r\n2\r\n}\r\n)\r\n
asynchronous interactions with high probability. We also present lower bounds
that match the upper bounds up to polylogarithmic factors for a specific initial
configuration and show that our upper bounds are essentially optimal."
acknowledgement: "Nobutaka Shimizu is supported by JSPS KAKENHI Grant Number\r\n23K16837.
Takeharu Shiraga is supported by JSPS KAKENHI Grant\r\nNumber 23K16840, and JST
CRONOS Grant Number JPMJCS24K2.\r\nColin Cooper is supported by a Mercator Fellowship
from DFG\r\nProject 491453517 at the University of Hamburg. We thank the\r\nanonymous
reviewers for their helpful comments and suggestions."
article_processing_charge: No
arxiv: 1
author:
- first_name: Colin
full_name: Cooper, Colin
last_name: Cooper
- first_name: Frederik
full_name: Mallmann-Trenn, Frederik
id: 68748c44-84d5-11f1-b4f6-ca083374e553
last_name: Mallmann-Trenn
- first_name: Tomasz
full_name: Radzik, Tomasz
last_name: Radzik
- first_name: Nobutaka
full_name: Shimizu, Nobutaka
last_name: Shimizu
- first_name: Takeharu
full_name: Shiraga, Takeharu
last_name: Shiraga
citation:
ama: 'Cooper C, Mallmann-Trenn F, Radzik T, Shimizu N, Shiraga T. Undecided state
dynamics with many opinions. In: Proceedings of the Annual ACM Symposium on
Principles of Distributed Computing. Association for Computing Machinery;
2026:77-87. doi:10.1145/3796701.3815920'
apa: 'Cooper, C., Mallmann-Trenn, F., Radzik, T., Shimizu, N., & Shiraga, T.
(2026). Undecided state dynamics with many opinions. In Proceedings of the
Annual ACM Symposium on Principles of Distributed Computing (pp. 77–87). Egham,
United Kingdom: Association for Computing Machinery. https://doi.org/10.1145/3796701.3815920'
chicago: Cooper, Colin, Frederik Mallmann-Trenn, Tomasz Radzik, Nobutaka Shimizu,
and Takeharu Shiraga. “Undecided State Dynamics with Many Opinions.” In Proceedings
of the Annual ACM Symposium on Principles of Distributed Computing, 77–87.
Association for Computing Machinery, 2026. https://doi.org/10.1145/3796701.3815920.
ieee: C. Cooper, F. Mallmann-Trenn, T. Radzik, N. Shimizu, and T. Shiraga, “Undecided
state dynamics with many opinions,” in Proceedings of the Annual ACM Symposium
on Principles of Distributed Computing, Egham, United Kingdom, 2026, pp. 77–87.
ista: 'Cooper C, Mallmann-Trenn F, Radzik T, Shimizu N, Shiraga T. 2026. Undecided
state dynamics with many opinions. Proceedings of the Annual ACM Symposium on
Principles of Distributed Computing. PODC: Symposium on Principles of Distributed
Computing, 77–87.'
mla: Cooper, Colin, et al. “Undecided State Dynamics with Many Opinions.” Proceedings
of the Annual ACM Symposium on Principles of Distributed Computing, Association
for Computing Machinery, 2026, pp. 77–87, doi:10.1145/3796701.3815920.
short: C. Cooper, F. Mallmann-Trenn, T. Radzik, N. Shimizu, T. Shiraga, in:, Proceedings
of the Annual ACM Symposium on Principles of Distributed Computing, Association
for Computing Machinery, 2026, pp. 77–87.
conference:
end_date: 2026-07-10
location: Egham, United Kingdom
name: 'PODC: Symposium on Principles of Distributed Computing'
start_date: 2026-07-06
corr_author: '1'
das_tickbox: '1'
date_created: 2026-07-19T22:01:47Z
date_published: 2026-07-01T00:00:00Z
date_updated: 2026-07-21T07:54:01Z
day: '01'
ddc:
- '000'
department:
- _id: MoHe
doi: 10.1145/3796701.3815920
external_id:
arxiv:
- '2603.02636'
file:
- access_level: open_access
checksum: 9ada61feba1e93fd72867a5ba4ee8bb8
content_type: application/pdf
creator: dernst
date_created: 2026-07-21T07:51:58Z
date_updated: 2026-07-21T07:51:58Z
file_id: '22380'
file_name: 2026_ACMPODC_Cooper.pdf
file_size: 709077
relation: main_file
success: 1
file_date_updated: 2026-07-21T07:51:58Z
fulldoi: https://doi.org/10.1145/3796701.3815920
has_accepted_license: '1'
keyword:
- consensus dynamics
- undecided state dynamics
- gossip model
- population protocol model
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 77-87
publication: Proceedings of the Annual ACM Symposium on Principles of Distributed
Computing
publication_identifier:
isbn:
- '9798400725128'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Undecided state dynamics with many opinions
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '22370'
abstract:
- lang: eng
text: We report a unified method for the synthesis of α-polyhalomethyl amines from
alkenes and alkynes, enabled by readily available hemiaminal reagents. This operationally
simple transformation allows for the introduction of not only well-established
CF3 and CF2H groups, but also the synthetically (and medicinally) underexplored
CF2Cl and CFClH motifs—thereby broadening access to previously inaccessible chemical
space of halogenated amine scaffolds. The method displays broad substrate scope
and functional-group tolerance while operating under mild conditions. Late-stage
functionalization of drug-like derivatives of Oxaprozin, Erlotinib, and Ibuprofen
(among others) is reported.
acknowledgement: "Funded by the European Union (ERC, C-HANCE, 101142915 to N.M.).
Views and opinions expressed are, however, those of the author(s) only and do not
necessarily reflect those of the European Union or the European Research Council.
This research was funded in full or in part by the Austrian Science Fund (FWF, 10.55776/P37182
to N.M.). The technical staff of the NMR Centre of the Faculty of Chemistry (University
of Vienna) are acknowledged for crucial NMR measurements and expert advice with
spectral analysis. The authors thank the Core Facility Crystal Structure Analysis
(U. Vienna) for determination of the crystal structures. The authors are also grateful
to the University of Vienna for its continued support of our research programs.\r\n\r\nOpen
Access funding provided by Universität Wien."
article_number: e1233707
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Angela K.
full_name: Hofmeister, Angela K.
last_name: Hofmeister
- first_name: Giulia
full_name: Iannelli, Giulia
last_name: Iannelli
- first_name: Péter
full_name: Angyal, Péter
last_name: Angyal
- first_name: Augustin
full_name: Malandain, Augustin
last_name: Malandain
- first_name: Daniel
full_name: Kaiser, Daniel
last_name: Kaiser
- first_name: Boris
full_name: Maryasin, Boris
last_name: Maryasin
- first_name: Hanspeter
full_name: Kählig, Hanspeter
last_name: Kählig
- first_name: Matteo
full_name: Barel, Matteo
id: 8959927b-2236-11ed-bd6e-ea83d94ade0e
last_name: Barel
- first_name: Gaia
full_name: Novarino, Gaia
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Nuno
full_name: Maulide, Nuno
last_name: Maulide
citation:
ama: Hofmeister AK, Iannelli G, Angyal P, et al. Unified synthesis of unconventional
α-polyhalogenated amines through hydroaminoalkylation. Angewandte Chemie International
Edition. 2026. doi:10.1002/anie.1233707
apa: Hofmeister, A. K., Iannelli, G., Angyal, P., Malandain, A., Kaiser, D., Maryasin,
B., … Maulide, N. (2026). Unified synthesis of unconventional α-polyhalogenated
amines through hydroaminoalkylation. Angewandte Chemie International Edition.
Wiley. https://doi.org/10.1002/anie.1233707
chicago: Hofmeister, Angela K., Giulia Iannelli, Péter Angyal, Augustin Malandain,
Daniel Kaiser, Boris Maryasin, Hanspeter Kählig, Matteo Barel, Gaia Novarino,
and Nuno Maulide. “Unified Synthesis of Unconventional α-Polyhalogenated Amines
through Hydroaminoalkylation.” Angewandte Chemie International Edition.
Wiley, 2026. https://doi.org/10.1002/anie.1233707.
ieee: A. K. Hofmeister et al., “Unified synthesis of unconventional α-polyhalogenated
amines through hydroaminoalkylation,” Angewandte Chemie International Edition.
Wiley, 2026.
ista: Hofmeister AK, Iannelli G, Angyal P, Malandain A, Kaiser D, Maryasin B, Kählig
H, Barel M, Novarino G, Maulide N. 2026. Unified synthesis of unconventional α-polyhalogenated
amines through hydroaminoalkylation. Angewandte Chemie International Edition.,
e1233707.
mla: Hofmeister, Angela K., et al. “Unified Synthesis of Unconventional α-Polyhalogenated
Amines through Hydroaminoalkylation.” Angewandte Chemie International Edition,
e1233707, Wiley, 2026, doi:10.1002/anie.1233707.
short: A.K. Hofmeister, G. Iannelli, P. Angyal, A. Malandain, D. Kaiser, B. Maryasin,
H. Kählig, M. Barel, G. Novarino, N. Maulide, Angewandte Chemie International
Edition (2026).
das_tickbox: '1'
dataavailabilitystatement: The data that supports the findings of this study are available
in the supplementary material of this article.
date_created: 2026-07-19T22:01:48Z
date_published: 2026-07-10T00:00:00Z
date_updated: 2026-07-21T07:19:26Z
day: '10'
ddc:
- '570'
- '540'
department:
- _id: GaNo
- _id: GradSch
doi: 10.1002/anie.1233707
external_id:
pmid:
- '42429166'
fulldoi: https://doi.org/10.1002/anie.1233707
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa_version: Published Version
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: epub_ahead
publisher: Wiley
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Unified synthesis of unconventional α-polyhalogenated amines through hydroaminoalkylation
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '22323'
abstract:
- lang: eng
text: Arrays of Josephson junctions can be tuned through anomalous metallic, quantum-critical,
and insulating regimes. We introduce an alternative experimental probe, capturing
microwave radiation across all three regimes, using a two-dimensional array of
superconductor-semiconductor hybrid Josephson junctions as a model system. Our
approach allows calibration of the sample’s circuit parameters and provides isolation
from measurement back-action effects. We measure the radiation temperature of
the anomalous metal and find that it is hotter than both the quantum-critical
and insulating regimes. We further show that the anomalous metallic regime is
more susceptible to additional heating than other regimes, explaining its emergence
in otherwise thermalized systems. Turning to the quantum-critical regime, we discover
nonlinear scaling of radiative noise with applied bias, consistent with theoretical
predictions of universal nonequilibrium behavior at quantum-critical points.
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
acknowledgement: "We gratefully acknowledge feedback on the preprint\r\nfrom Charles
Marcus, Vadim Khrapai, Joel Moore,\r\nAndrew Green, Shivaji Sondhi, Rufus Boyack,
and\r\nLuca Delacr´etaz. This work was primarily supported by\r\nthe NOMIS foundation.
This work was partially supported\r\nby the University of Chicago Materials Research
Science\r\nand Engineering Center, which is funded by the National\r\nScience Foundation
under Award No. DMR-2011854, and\r\nby the SFB Q-M&S funded by the Austrian Science
Fund\r\n(FWF). We acknowledge technical support from the\r\nNanofabrication Facility
and the MIBA machine shop at\r\nIST Austria."
article_number: '014031'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Kristen W
full_name: Galvin, Kristen W
id: 41737c86-5355-11ee-ae5a-d2146bfd0877
last_name: Galvin
- first_name: Anton
full_name: Bubis, Anton
id: 1f6212b5-f795-11ec-9c0c-de4780302890
last_name: Bubis
- first_name: Melissa
full_name: Mikalsen, Melissa
last_name: Mikalsen
- first_name: William F.
full_name: Schiela, William F.
last_name: Schiela
- first_name: Bassel H.
full_name: Elfeky, Bassel H.
last_name: Elfeky
- first_name: William M.
full_name: Strickland, William M.
last_name: Strickland
- first_name: Duc T
full_name: Phan, Duc T
id: 29C8C0B4-F248-11E8-B48F-1D18A9856A87
last_name: Phan
- first_name: Javad
full_name: Shabani, Javad
last_name: Shabani
- first_name: Andrew P
full_name: Higginbotham, Andrew P
id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
last_name: Higginbotham
orcid: 0000-0003-2607-2363
citation:
ama: Léonard KW, Bubis A, Mikalsen M, et al. Microwave radiometry of a quantum-critical
hybrid Josephson array. Physical Review Applied. 2026;26. doi:10.1103/75bl-mm3b
apa: Léonard, K. W., Bubis, A., Mikalsen, M., Schiela, W. F., Elfeky, B. H., Strickland,
W. M., … Higginbotham, A. P. (2026). Microwave radiometry of a quantum-critical
hybrid Josephson array. Physical Review Applied. American Physical Society.
https://doi.org/10.1103/75bl-mm3b
chicago: Léonard, Kristen Williams, Anton Bubis, Melissa Mikalsen, William F. Schiela,
Bassel H. Elfeky, William M. Strickland, Duc T Phan, Javad Shabani, and Andrew
P Higginbotham. “Microwave Radiometry of a Quantum-Critical Hybrid Josephson Array.”
Physical Review Applied. American Physical Society, 2026. https://doi.org/10.1103/75bl-mm3b.
ieee: K. W. Léonard et al., “Microwave radiometry of a quantum-critical hybrid
Josephson array,” Physical Review Applied, vol. 26. American Physical Society,
2026.
ista: Léonard KW, Bubis A, Mikalsen M, Schiela WF, Elfeky BH, Strickland WM, Phan
DT, Shabani J, Higginbotham AP. 2026. Microwave radiometry of a quantum-critical
hybrid Josephson array. Physical Review Applied. 26, 014031.
mla: Léonard, Kristen Williams, et al. “Microwave Radiometry of a Quantum-Critical
Hybrid Josephson Array.” Physical Review Applied, vol. 26, 014031, American
Physical Society, 2026, doi:10.1103/75bl-mm3b.
short: K.W. Léonard, A. Bubis, M. Mikalsen, W.F. Schiela, B.H. Elfeky, W.M. Strickland,
D.T. Phan, J. Shabani, A.P. Higginbotham, Physical Review Applied 26 (2026).
corr_author: '1'
dataavailabilitystatement: "The data that support the findings of this article are
openly available under 10.5281/zenodo\r\n.19615009. "
date_created: 2026-07-14T05:35:24Z
date_published: 2026-07-10T00:00:00Z
date_updated: 2026-07-21T12:01:49Z
day: '10'
ddc:
- '530'
department:
- _id: GradSch
- _id: AnHi
- _id: GeKa
doi: 10.1103/75bl-mm3b
external_id:
arxiv:
- '2409.09835'
file:
- access_level: open_access
checksum: d872ca35d9d2c7821642fda520be2c15
content_type: application/pdf
creator: dernst
date_created: 2026-07-16T09:39:37Z
date_updated: 2026-07-16T09:39:37Z
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fulldoi: https://doi.org/10.1103/75bl-mm3b
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intvolume: ' 26'
language:
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month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 34a66131-11ca-11ed-8bc3-a31681c6b03e
grant_number: F8606
name: 'Center for Correlated Quantum Materials and Solid State Quantum Systems:
Conventional and unconventional topological superconductors'
publication: Physical Review Applied
publication_identifier:
issn:
- 2331-7019
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: no
title: Microwave radiometry of a quantum-critical hybrid Josephson array
tmp:
image: /images/cc_by.png
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name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '22321'
abstract:
- lang: eng
text: 'Runtime fairness is not a one-time constraint but a dynamic property evaluated
over a sequence of decisions. To ensure fairness at runtime, it is necessary to
account for past decisions, information neglected by conventional, static classifiers.
Traditional fairness shields enforce runtime fairness abruptly, by intervening
deterministically whenever a sequence of decisions violates the target for a running
fairness measure. This motivates our main conceptual contribution: energy shields.
An energy shield is a novel, lightweight, adaptive controller that monitors a
sequence of decisions and intervenes probabilistically to ensure runtime fairness
smoothly, by utilizing physics-inspired energy functions to nudge the sequence
toward fairness: the more unfair the decisions, the stronger the nudging force
becomes. This makes energy shields the first fairness shields to provide both
short-term safety and long-term liveness guarantees. Safety ensures that the running
fairness measure stays within a running target interval with high probability,
and liveness ensures that the limit of the fairness measure lies within the limit
target interval. Intuitively, the short-term specifies the tolerated fairness
values and the long-term specifies the desired fairness values. We also provide
a synthesis procedure for constructing the least intrusive energy shield for a
given target specification, and demonstrate its efficiency experimentally. We
evaluate our energy shields against existing fairness shields through the lens
of short- and long-term fairness.'
acknowledgement: 'This work has been supported by the European Research Council under
Grant No.: ERC-2020-AdG 101020093.'
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Filip
full_name: Cano Cordoba, Filip
id: 708cad98-e86a-11ef-8098-bdae2d7c6af1
last_name: Cano Cordoba
orcid: 0000-0002-0783-904X
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
- first_name: Konstantin
full_name: Kueffner, Konstantin
id: 8121a2d0-dc85-11ea-9058-af578f3b4515
last_name: Kueffner
orcid: 0000-0001-8974-2542
citation:
ama: 'Cano Cordoba F, Henzinger TA, Kueffner K. Energy shields for fairness. In:
Proceedings of the 2026 ACM Conference on Fairness, Accountability, and Transparency.
Association for Computing Machinery; 2026:4243-4275. doi:10.1145/3805689.3806807'
apa: 'Cano Cordoba, F., Henzinger, T. A., & Kueffner, K. (2026). Energy shields
for fairness. In Proceedings of the 2026 ACM Conference on Fairness, Accountability,
and Transparency (pp. 4243–4275). Montreal, Canada: Association for Computing
Machinery. https://doi.org/10.1145/3805689.3806807'
chicago: Cano Cordoba, Filip, Thomas A Henzinger, and Konstantin Kueffner. “Energy
Shields for Fairness.” In Proceedings of the 2026 ACM Conference on Fairness,
Accountability, and Transparency, 4243–75. Association for Computing Machinery,
2026. https://doi.org/10.1145/3805689.3806807.
ieee: F. Cano Cordoba, T. A. Henzinger, and K. Kueffner, “Energy shields for fairness,”
in Proceedings of the 2026 ACM Conference on Fairness, Accountability, and
Transparency, Montreal, Canada, 2026, pp. 4243–4275.
ista: 'Cano Cordoba F, Henzinger TA, Kueffner K. 2026. Energy shields for fairness.
Proceedings of the 2026 ACM Conference on Fairness, Accountability, and Transparency.
FAccT: Conference on Fairness, Accountability and Transparency, 4243–4275.'
mla: Cano Cordoba, Filip, et al. “Energy Shields for Fairness.” Proceedings of
the 2026 ACM Conference on Fairness, Accountability, and Transparency, Association
for Computing Machinery, 2026, pp. 4243–75, doi:10.1145/3805689.3806807.
short: F. Cano Cordoba, T.A. Henzinger, K. Kueffner, in:, Proceedings of the 2026
ACM Conference on Fairness, Accountability, and Transparency, Association for
Computing Machinery, 2026, pp. 4243–4275.
conference:
end_date: 2026-06-28
location: Montreal, Canada
name: 'FAccT: Conference on Fairness, Accountability and Transparency'
start_date: 2026-06-25
corr_author: '1'
das_tickbox: '0'
date_created: 2026-07-14T05:32:45Z
date_published: 2026-07-01T00:00:00Z
date_updated: 2026-07-22T06:15:56Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1145/3805689.3806807
ec_funded: 1
external_id:
arxiv:
- '2605.24926'
file:
- access_level: open_access
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creator: dernst
date_created: 2026-07-16T09:23:15Z
date_updated: 2026-07-16T09:23:15Z
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file_size: 3129128
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language:
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month: '07'
oa: 1
oa_version: Published Version
page: 4243 - 4275
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
call_identifier: H2020
grant_number: '101020093'
name: Vigilant Algorithmic Monitoring of Software
publication: Proceedings of the 2026 ACM Conference on Fairness, Accountability, and
Transparency
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Energy shields for fairness
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21995'
abstract:
- lang: eng
text: On 26–28 September 2024, torrential rainfall struck Nepal during the late
monsoon season, causing flooding, landslides and extensive damage. This study
examined the multiscale processes contributing to this extreme precipitation event,
focusing on intraseasonal oscillations, synoptic-scale circulations, and mesoscale
cloud/precipitation systems. A quasi-biweekly intraseasonal oscillation dominated
over South Asia during the event, featuring a monsoon low-pressure system over
the Indian Peninsula and an anticyclone to its east, both propagating westward.
The pressure gradient between them sustained strong southerly moisture transport
toward the Himalayas, establishing a persistently humid environment and orographic
lift along the southern slopes. In contrast to reports of previous extreme precipitation
events in Nepal, the atmospheric circulation responsible for the 2024 event was
primarily of tropical origin, with minimal influence from the midlatitudes. Characteristic
mesoscale cloud/precipitation systems also developed around the Himalayas. The
highest daily precipitation during the event was recorded on 27 September; stratiform
systems with relatively modest storm top heights developed over the southern slopes,
generating surface precipitation rates of > 100 mm h− 1 through warm-rain processes.
Rain gauges across the glacierized basin (3500–5000 m asl) recorded exceptionally
high daily and hourly precipitation rates, highlighting the extension of intense
rainfall to unusually high elevations.
acknowledgement: 'This work was supported by the Japan Society for the Promotion of
Science (JSPS) (KAKENHI Grants: 22H00176, 22H00033, 22H00037, and 23KK0064). It
was partly supported by the 4th Research Announcement on the Earth Observations
of the Japan Aerospace Exploration Agency (JAXA). It was partly carried out under
the joint research program of Institute for Space–Earth Environmental Research,
Nagoya University and as a joint research program with the Center for Environmental
Remote Sensing (CEReS), Chiba University (CJ25-43, 2025). We thank James Buxton
MSc and Tina Tin PhD from Edanz (https://jp.edanz.com/ac), for editing a draft of
this manuscript. The Japan Society for the Promotion of Science (JSPS) supports
this work (KAKENHI Grants: 22H00176, 22H00033, 22H00037, and 23KK0064).'
article_number: '27'
article_processing_charge: Yes
article_type: original
author:
- first_name: Hatsuki
full_name: Fujinami, Hatsuki
last_name: Fujinami
- first_name: Nobuhiro
full_name: Takahashi, Nobuhiro
last_name: Takahashi
- first_name: Hironari
full_name: Kanamori, Hironari
last_name: Kanamori
- first_name: Yota
full_name: Sato, Yota
id: daa9e17a-f2c2-11ef-b968-915e836dea45
last_name: Sato
- first_name: Sojiro
full_name: Sunako, Sojiro
last_name: Sunako
- first_name: Masaya
full_name: Kato, Masaya
last_name: Kato
- first_name: Atsushi
full_name: Higuchi, Atsushi
last_name: Higuchi
- first_name: Indira
full_name: Kadel, Indira
last_name: Kadel
- first_name: Dibas
full_name: Shrestha, Dibas
last_name: Shrestha
- first_name: Rijan B.
full_name: Kayastha, Rijan B.
last_name: Kayastha
- first_name: Koji
full_name: Fujita, Koji
last_name: Fujita
citation:
ama: Fujinami H, Takahashi N, Kanamori H, et al. Multiscale aspects of an extreme
precipitation event over Nepal in September 2024. Scientific Online Letters
on the Atmosphere. 2026;22. doi:10.1007/s44393-026-00024-0
apa: Fujinami, H., Takahashi, N., Kanamori, H., Sato, Y., Sunako, S., Kato, M.,
… Fujita, K. (2026). Multiscale aspects of an extreme precipitation event over
Nepal in September 2024. Scientific Online Letters on the Atmosphere. Springer
Nature. https://doi.org/10.1007/s44393-026-00024-0
chicago: Fujinami, Hatsuki, Nobuhiro Takahashi, Hironari Kanamori, Yota Sato, Sojiro
Sunako, Masaya Kato, Atsushi Higuchi, et al. “Multiscale Aspects of an Extreme
Precipitation Event over Nepal in September 2024.” Scientific Online Letters
on the Atmosphere. Springer Nature, 2026. https://doi.org/10.1007/s44393-026-00024-0.
ieee: H. Fujinami et al., “Multiscale aspects of an extreme precipitation
event over Nepal in September 2024,” Scientific Online Letters on the Atmosphere,
vol. 22. Springer Nature, 2026.
ista: Fujinami H, Takahashi N, Kanamori H, Sato Y, Sunako S, Kato M, Higuchi A,
Kadel I, Shrestha D, Kayastha RB, Fujita K. 2026. Multiscale aspects of an extreme
precipitation event over Nepal in September 2024. Scientific Online Letters on
the Atmosphere. 22, 27.
mla: Fujinami, Hatsuki, et al. “Multiscale Aspects of an Extreme Precipitation Event
over Nepal in September 2024.” Scientific Online Letters on the Atmosphere,
vol. 22, 27, Springer Nature, 2026, doi:10.1007/s44393-026-00024-0.
short: H. Fujinami, N. Takahashi, H. Kanamori, Y. Sato, S. Sunako, M. Kato, A. Higuchi,
I. Kadel, D. Shrestha, R.B. Kayastha, K. Fujita, Scientific Online Letters on
the Atmosphere 22 (2026).
das_tickbox: '1'
dataavailabilitystatement: Daily rainfall data across Nepal were obtained from the
Department of Hydrology and Meteorology, Kathmandu, Nepal (https://dhm.gov.np/).
Precipitation data from Pyramid observatory are available from [https://glacioclim.osug.fr/Donnees-du-Nepal-region-du-Khumbu](https:/glacioclim.osug.fr/Donnees-du-Nepal-region-du-Khumbu)
. Precipitation data from rain gauges in Rolwaling valley are available from https://doi.org/10.5281/zenodo.18081206.
NOAA’s Climate Prediction Center provided daily OLR data ( [https://psl.noaa.gov/data/gridded/data.cpc\_blended\_olr-2.5
deg.html](https:/psl.noaa.gov/data/gridded/data.cpc_blended_olr-2.5 deg.html) ).
We used infrared brightness temperature data from MSG2 (Meteosat 9)-IODC. The Center
for Environmental Remote Sensing (CEReS), Chiba University, archived and provided
the data (https://ceres.chiba-u.jp/en/ top-eng/). The GPM DPR products are available
from the Japan Aerospace Exploration Agency (JAXA) G-Portal website ( [https://gportal.jaxa.jp/gpr/](https:/gportal.jaxa.jp/gpr)
). The ERA5 data are available from the Copernicus climate-change service (C3S)
climate data store (https://doi.org/10.24381/cds.bd0915c6). GMTED2010 data are available
from the US Geological Survey (https://topotools.cr.usgs.gov/gmted\_viewer/viewer.htm).
date_created: 2026-06-14T22:01:42Z
date_published: 2026-06-04T00:00:00Z
date_updated: 2026-07-22T06:14:16Z
day: '04'
ddc:
- '550'
department:
- _id: FrPe
doi: 10.1007/s44393-026-00024-0
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language:
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month: '06'
oa: 1
oa_version: Published Version
publication: Scientific Online Letters on the Atmosphere
publication_identifier:
eissn:
- 1349-6476
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Multiscale aspects of an extreme precipitation event over Nepal in September
2024
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
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short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2026'
...
---
OA_place: publisher
_id: '21021'
abstract:
- lang: eng
text: This thesis examines how geometry and topology intersect in the representation,
transformation, and analysis of complex shapes. It considers how continuous manifolds
relate to their discrete analogues, how topological structures evolve in persistence
vineyards, and how tools from topological data analysis can illuminate problems
in mathematical physics. Central to this exploration is the question of how structure,
both geometric and topological, persists or changes under approximation, sampling,
or deformation. The work develops new approaches to skeletal and grid-based representations
of surfaces, reveals the full expressive capacity of persistence vineyards, and
applies topological methods to the longstanding problem of equilibria in electrostatic
fields. These threads braid together into a broader understanding of how topology
and geometry inform one another across theory, computation, and application.
acknowledged_ssus:
- _id: M-Shop
- _id: ScienComp
acknowledgement: "The research presented in this thesis was funded by the DFG Collaborative
Research\r\nCenter TRR 109, ‘Discretization in Geometry and Dynamics’.\r\n"
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Christopher D
full_name: Fillmore, Christopher D
id: 35638A5C-AAC7-11E9-B0BF-5503E6697425
last_name: Fillmore
citation:
ama: Fillmore CD. Braiding geometry and topology to study shapes and data. 2026.
doi:10.15479/AT-ISTA-21021
apa: Fillmore, C. D. (2026). Braiding geometry and topology to study shapes and
data. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-21021
chicago: Fillmore, Christopher D. “Braiding Geometry and Topology to Study Shapes
and Data.” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-21021.
ieee: C. D. Fillmore, “Braiding geometry and topology to study shapes and data,”
Institute of Science and Technology Austria, 2026.
ista: Fillmore CD. 2026. Braiding geometry and topology to study shapes and data.
Institute of Science and Technology Austria.
mla: Fillmore, Christopher D. Braiding Geometry and Topology to Study Shapes
and Data. Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-21021.
short: C.D. Fillmore, Braiding Geometry and Topology to Study Shapes and Data, Institute
of Science and Technology Austria, 2026.
corr_author: '1'
date_created: 2026-01-20T21:38:40Z
date_published: 2026-01-21T00:00:00Z
date_updated: 2026-07-22T06:33:54Z
day: '21'
ddc:
- '514'
- '516'
degree_awarded: PhD
department:
- _id: GradSch
- _id: HeEd
- _id: UlWa
doi: 10.15479/AT-ISTA-21021
file:
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checksum: 4c0889130095c31d4e5088c5b8dfd607
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language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: '122'
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '20260'
relation: part_of_dissertation
status: public
- id: '21051'
relation: part_of_dissertation
status: public
- id: '21050'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
title: Braiding geometry and topology to study shapes and data
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
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short: CC BY (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21931'
abstract:
- lang: eng
text: In 1873, James C. Maxwell conjectured that the electric field generated by
n point charges in generic position has at most (n-1)^2 isolated zeroes. The first
(nonoptimal) upper bound was only obtained in 2007 by Gabrielov, Novikov, and
Shapiro, who also posed two additional interesting conjectures. In this article,
we give the best upper bound known to date on the number of zeroes of the electric
field, and construct a counterexample to Conjecture 1.8 by Gabrielov, Novikov,
and Shapiro that the number of equilibria cannot exceed those of the distance
function defined by the unit point charges. Finally, we note that it is quite
possible that Maxwell's quadratic upper bound is not tight, so it is prudent to
find lower bounds. Hence, we also explore examples and construct configurations
of charges achieving the highest ratios of the number of electric field zeroes
by point charges found to this day.
article_number: e70163
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Christopher D
full_name: Fillmore, Christopher D
id: 35638A5C-AAC7-11E9-B0BF-5503E6697425
last_name: Fillmore
- first_name: Goncalo
full_name: Oliveira, Goncalo
id: 58abbde8-f455-11eb-a497-98c8fd71b905
last_name: Oliveira
citation:
ama: Edelsbrunner H, Fillmore CD, Oliveira G. Counting equilibria of the electrostatic
potential. Proceedings of the London Mathematical Society. 2026;132(5).
doi:10.1112/plms.70163
apa: Edelsbrunner, H., Fillmore, C. D., & Oliveira, G. (2026). Counting equilibria
of the electrostatic potential. Proceedings of the London Mathematical Society.
Wiley. https://doi.org/10.1112/plms.70163
chicago: Edelsbrunner, Herbert, Christopher D Fillmore, and Goncalo Oliveira. “Counting
Equilibria of the Electrostatic Potential.” Proceedings of the London Mathematical
Society. Wiley, 2026. https://doi.org/10.1112/plms.70163.
ieee: H. Edelsbrunner, C. D. Fillmore, and G. Oliveira, “Counting equilibria of
the electrostatic potential,” Proceedings of the London Mathematical Society,
vol. 132, no. 5. Wiley, 2026.
ista: Edelsbrunner H, Fillmore CD, Oliveira G. 2026. Counting equilibria of the
electrostatic potential. Proceedings of the London Mathematical Society. 132(5),
e70163.
mla: Edelsbrunner, Herbert, et al. “Counting Equilibria of the Electrostatic Potential.”
Proceedings of the London Mathematical Society, vol. 132, no. 5, e70163,
Wiley, 2026, doi:10.1112/plms.70163.
short: H. Edelsbrunner, C.D. Fillmore, G. Oliveira, Proceedings of the London Mathematical
Society 132 (2026).
corr_author: '1'
date_created: 2026-05-31T22:02:13Z
date_published: 2026-05-01T00:00:00Z
date_updated: 2026-07-22T06:33:54Z
day: '01'
department:
- _id: HeEd
- _id: TaHa
doi: 10.1112/plms.70163
external_id:
arxiv:
- '2501.05315'
fulldoi: https://doi.org/10.1112/plms.70163
intvolume: ' 132'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2501.05315
month: '05'
oa: 1
oa_version: Preprint
publication: Proceedings of the London Mathematical Society
publication_identifier:
eissn:
- 1460-244X
issn:
- 0024-6115
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
record:
- id: '21050'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: Counting equilibria of the electrostatic potential
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 132
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21489'
abstract:
- lang: eng
text: We study Kirillov algebras attached to minuscule highest weight representations
of semisimple Lie algebras. They can be viewed as equivariant cohomology algebras
of partial flag varieties. Real structures on the varieties then induce involutions
of these algebras. We describe how these involutions act on the spectra of minuscule
Kirillov algebras, and model the fixed points via the equivariant cohomology of
real partial flag varieties. We then use this model to characterise freeness of
the fixed point coordinate ring over the appropriate base. As an application,
we recover a q = -1 phenomenon of Stembridge in the minuscule case by geometric
means.
acknowledgement: 'I would like to thank Tamás Hausel for introducing me to this area
of mathematics and for his constant guidance. I would also like to thank Jakub Löwit
and Miguel González for fruitful discussions and many helpful comments on this paper.
This work was done during the author’s PhD studies at the Institute of Science and
Technology Austria (ISTA). It was funded by the Austrian Science Fund (FWF) 10.55776/P35847.
Open access funding provided by Institute of Science and Technology (IST Austria). '
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Mischa M
full_name: Elkner, Mischa M
id: 477faa59-080d-11ed-979a-c693ab7638ab
last_name: Elkner
citation:
ama: Elkner MM. On involutions of minuscule Kirillov algebras induced by real structures.
Transformation Groups. 2026. doi:10.1007/s00031-026-09958-y
apa: Elkner, M. M. (2026). On involutions of minuscule Kirillov algebras induced
by real structures. Transformation Groups. Springer Nature. https://doi.org/10.1007/s00031-026-09958-y
chicago: Elkner, Mischa M. “On Involutions of Minuscule Kirillov Algebras Induced
by Real Structures.” Transformation Groups. Springer Nature, 2026. https://doi.org/10.1007/s00031-026-09958-y.
ieee: M. M. Elkner, “On involutions of minuscule Kirillov algebras induced by real
structures,” Transformation Groups. Springer Nature, 2026.
ista: Elkner MM. 2026. On involutions of minuscule Kirillov algebras induced by
real structures. Transformation Groups.
mla: Elkner, Mischa M. “On Involutions of Minuscule Kirillov Algebras Induced by
Real Structures.” Transformation Groups, Springer Nature, 2026, doi:10.1007/s00031-026-09958-y.
short: M.M. Elkner, Transformation Groups (2026).
corr_author: '1'
das_tickbox: '1'
date_created: 2026-03-23T15:10:43Z
date_published: 2026-03-14T00:00:00Z
date_updated: 2026-07-22T07:37:35Z
day: '14'
ddc:
- '510'
department:
- _id: TaHa
doi: 10.1007/s00031-026-09958-y
external_id:
arxiv:
- '2411.16270'
fulldoi: https://doi.org/10.1007/s00031-026-09958-y
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1007/s00031-026-09958-y
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 34b2c9cb-11ca-11ed-8bc3-a50ba74ca4a3
grant_number: P35847
name: Geometry of the tip of the global nilpotent cone
publication: Transformation Groups
publication_identifier:
eissn:
- 1531-586X
issn:
- 1083-4362
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
status: public
title: On involutions of minuscule Kirillov algebras induced by real structures
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_type: closed access
_id: '21916'
abstract:
- lang: eng
text: 'Social network graphs are central to graph learning research, serving as
standard benchmarks for algorithm evaluation. However, existing datasets focus
mainly on mainstream social media platforms whose structures are shaped notably
by algorithmic recommendations. This raises an important question: would alternative,
decentralized social networks exhibit different properties? We address this by
studying the Fediverse; a collection of decentralized social networks (such as
Mastodon and Lemmy). These platforms differ fundamentally from for-profit social
media, notably in decentralization and absence of recommendation algorithms, which
may yield distinct graph structures. We introduce Fedivertex, a dataset of over
400 graphs from seven decentralized networks, collected weekly over six months.
The dataset, released with a companion Python package to facilitate its use, supports
research on temporal and structural aspects of decentralized social networks.
In particular, we benchmark applications to decentralized machine learning and
community detection.'
article_processing_charge: No
author:
- first_name: Marc
full_name: Damie, Marc
last_name: Damie
- first_name: Edwige Audrey Lucienne
full_name: Cyffers, Edwige Audrey Lucienne
id: 20d4c299-977a-11ef-ae55-98b15ac64a57
last_name: Cyffers
citation:
ama: 'Damie M, Cyffers EAL. Fedivertex: A graph dataset based on decentralized Social
Media. In: 2026 Proceedings of the ACM Web Conference. ACM; :8393-8396.
doi:10.1145/3774904.3792868'
apa: 'Damie, M., & Cyffers, E. A. L. (n.d.). Fedivertex: A graph dataset based
on decentralized Social Media. In 2026 Proceedings of the ACM Web Conference
(pp. 8393–8396). Dubai: ACM. https://doi.org/10.1145/3774904.3792868'
chicago: 'Damie, Marc, and Edwige Audrey Lucienne Cyffers. “Fedivertex: A Graph
Dataset Based on Decentralized Social Media.” In 2026 Proceedings of the ACM
Web Conference, 8393–96. ACM, n.d. https://doi.org/10.1145/3774904.3792868.'
ieee: 'M. Damie and E. A. L. Cyffers, “Fedivertex: A graph dataset based on decentralized
Social Media,” in 2026 Proceedings of the ACM Web Conference, Dubai, pp.
8393–8396.'
ista: 'Damie M, Cyffers EAL. Fedivertex: A graph dataset based on decentralized
Social Media. 2026 Proceedings of the ACM Web Conference. WWW: Web Conference,
8393–8396.'
mla: 'Damie, Marc, and Edwige Audrey Lucienne Cyffers. “Fedivertex: A Graph Dataset
Based on Decentralized Social Media.” 2026 Proceedings of the ACM Web Conference,
ACM, pp. 8393–96, doi:10.1145/3774904.3792868.'
short: M. Damie, E.A.L. Cyffers, in:, 2026 Proceedings of the ACM Web Conference,
ACM, n.d., pp. 8393–8396.
conference:
end_date: 2026-07-03
location: Dubai
name: 'WWW: Web Conference'
start_date: 2026-06-29
date_created: 2026-05-24T22:01:32Z
date_published: 2026-04-12T00:00:00Z
date_updated: 2026-07-22T07:38:14Z
day: '12'
department:
- _id: ChLa
doi: 10.1145/3774904.3792868
fulldoi: https://doi.org/10.1145/3774904.3792868
language:
- iso: eng
month: '04'
oa_version: None
page: 8393-8396
publication: 2026 Proceedings of the ACM Web Conference
publication_identifier:
isbn:
- '9798400723070'
publication_status: accepted
publisher: ACM
scopus_import: '1'
status: public
title: 'Fedivertex: A graph dataset based on decentralized Social Media'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '22327'
abstract:
- lang: eng
text: "Population protocols are a model of distributed computing where\r\n\U0001D45B
agents, each a simple finite-state machine, interact in pairs to\r\nsolve a common
task against a (adversarial) interaction scheduler.\r\nThis model was intensively
studied in recent years; in particular,\r\nthe problem of relative majority received
much attention: Each\r\nagent starts with an input opinion (or color) out of \U0001D458
possibilities,\r\nand the goal is for each agent to eventually output the color
with\r\nthe largest support in the population. Before our work, the state\r\ncomplexity
(the minimum number of states required per agent) was\r\nonly known to be between
Ω(\U0001D458\r\n2\r\n) and\U0001D442(\U0001D458\r\n7\r\n). Our main contribution\r\nis
a population protocol that solves the relative majority problem\r\nwith \U0001D458\r\n3\r\nstates.
We achieve this result with a new protocol called\r\nCircles. While prior approaches
in the literature relied on duels of\r\nagents to find the majority color — an
approach that proved effective\r\nfor the case with two colors — Circles partitions
the agents into\r\ncircular linked lists of decreasing sizes, with the property
that no\r\ntwo agents with the same initial color lie in the same circle. We\r\nshow
that Circles always correctly computes the desired structure\r\nagainst the most
adversarial of schedulers (weakly fair). We then\r\nshow that a trivial extension
of Circles solves the relative majority\r\nproblem. We extend our protocol to
handle various tie-breaking\r\nmechanisms or to support the case where the agents
do not share a\r\nprior ordering of the colors. Finally, we show that a modification
of\r\nCircles solves the ranking problem with 2 · \U0001D458^4\r\nstates, where
each\r\nagent must output the rank of its initial color in the population."
acknowledgement: "Funded by the European union. Views and opinions expressed are\r\nhowever
those of the author(s) only and do not necessarily reflect\r\nthose of the European
Union or the European Research Council\r\nExecutive Agency. Neither the European
Union nor the granting authority can be held responsible for them. This project
has received\r\nfunding from the European Research Council (ERC) under the European
Union’s Horizon 2020 research and innovation programme\r\n(MoDynStruct, No. 101019564)
and the Austrian Science\r\nFund (FWF) grant DOI 10.55776/I5982. For open access
purposes,\r\nthe author has applied a CC BY public copyright license to any\r\nauthor-accepted
manuscript version arising from this submission."
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Tom-Lukas
full_name: Breitkopf, Tom-Lukas
last_name: Breitkopf
- first_name: Julien
full_name: Dallot, Julien
last_name: Dallot
- first_name: Antoine
full_name: El-Hayek, Antoine
id: 888a098e-fcac-11ee-aff7-d347be57b725
last_name: El-Hayek
orcid: 0000-0003-4268-7368
- first_name: Stefan
full_name: Schmid, Stefan
last_name: Schmid
citation:
ama: 'Breitkopf T-L, Dallot J, El-Hayek A, Schmid S. Ranking opinions with few states
in population protocols. In: Proceedings of the ACM Symposium on Principles
of Distributed Computing. Association for Computing Machinery; 2026:414-424.
doi:10.1145/3796701.3815913'
apa: 'Breitkopf, T.-L., Dallot, J., El-Hayek, A., & Schmid, S. (2026). Ranking
opinions with few states in population protocols. In Proceedings of the ACM
Symposium on Principles of Distributed Computing (pp. 414–424). Egham, United
Kingdom: Association for Computing Machinery. https://doi.org/10.1145/3796701.3815913'
chicago: Breitkopf, Tom-Lukas, Julien Dallot, Antoine El-Hayek, and Stefan Schmid.
“Ranking Opinions with Few States in Population Protocols.” In Proceedings
of the ACM Symposium on Principles of Distributed Computing, 414–24. Association
for Computing Machinery, 2026. https://doi.org/10.1145/3796701.3815913.
ieee: T.-L. Breitkopf, J. Dallot, A. El-Hayek, and S. Schmid, “Ranking opinions
with few states in population protocols,” in Proceedings of the ACM Symposium
on Principles of Distributed Computing, Egham, United Kingdom, 2026, pp. 414–424.
ista: 'Breitkopf T-L, Dallot J, El-Hayek A, Schmid S. 2026. Ranking opinions with
few states in population protocols. Proceedings of the ACM Symposium on Principles
of Distributed Computing. PODC: Symposium on Principles of Distributed Computing,
414–424.'
mla: Breitkopf, Tom-Lukas, et al. “Ranking Opinions with Few States in Population
Protocols.” Proceedings of the ACM Symposium on Principles of Distributed Computing,
Association for Computing Machinery, 2026, pp. 414–24, doi:10.1145/3796701.3815913.
short: T.-L. Breitkopf, J. Dallot, A. El-Hayek, S. Schmid, in:, Proceedings of the
ACM Symposium on Principles of Distributed Computing, Association for Computing
Machinery, 2026, pp. 414–424.
conference:
end_date: 2026-07-10
location: Egham, United Kingdom
name: 'PODC: Symposium on Principles of Distributed Computing'
start_date: 2026-07-06
corr_author: '1'
das_tickbox: '0'
date_created: 2026-07-14T05:40:17Z
date_published: 2026-07-01T00:00:00Z
date_updated: 2026-07-22T07:49:22Z
day: '01'
ddc:
- '000'
department:
- _id: MoHe
- _id: GradSch
doi: 10.1145/3796701.3815913
ec_funded: 1
external_id:
arxiv:
- '2605.18707'
file:
- access_level: open_access
checksum: e56da70c1b2e7e663d2d8106cf07a30a
content_type: application/pdf
creator: dernst
date_created: 2026-07-16T11:18:44Z
date_updated: 2026-07-16T11:18:44Z
file_id: '22353'
file_name: 2026_ACMPODC_Breitkopf.pdf
file_size: 702140
relation: main_file
success: 1
file_date_updated: 2026-07-16T11:18:44Z
fulldoi: https://doi.org/10.1145/3796701.3815913
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 414 - 424
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
call_identifier: H2020
grant_number: '101019564'
name: The design and evaluation of modern fully dynamic data structures
- _id: bda196b2-d553-11ed-ba76-8e8ee6c21103
grant_number: I05982
name: Static and Dynamic Hierarchical Graph Decompositions
publication: Proceedings of the ACM Symposium on Principles of Distributed Computing
publication_identifier:
isbn:
- '9798400725128'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Ranking opinions with few states in population protocols
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20851'
abstract:
- lang: eng
text: High-voltage disordered spinel LiNi0.5Mn1.5O4 is a promising cathode material
for high power density in lithium-ion batteries. However, it suffers from poor
cycle life associated with the rock-salt phase transformation. This study presents
a straightforward synthesis approach to enhance the electrochemical performance
of LiNi0.5Mn1.5O4 through a synergistic solid-state modification with LiF and
AlF3. This dual modification promotes rapid Li⁺ diffusion, enables near-complete
delithiation/lithiation, approaching the theoretical capacity of disordered LiNi0.5Mn1.5O4,
and, more importantly, effectively mitigates the formation of the rock-salt phase,
thereby enhancing structural stability, as confirmed by operando X-ray absorption
spectroscopy (XAS) and synchrotron X-ray diffraction (SXRD). As a result, the
optimized LiNi0.5Mn1.5O4 (10 mg AlF3 + 30 mg LiF) delivers high reversible capacities
of 142.1, 139.1, 129.2, 121.6, 110.3, 93.5, and 76.1 mAh∙g−1 at 0.2C, 0.5C, 1.0C,
2.0C, 3.0C, 4.0C, and 5.0C, respectively. Full cells using graphite as the anode
and a high-loading cathode exhibit excellent cycling performance. They retain
80% of their capacity after 200 cycles at 0.5C within a voltage window of 3.5–4.9
V with cathode loading of 11 mg∙cm−2. The findings of this study will significantly
advance high-power LiNi0.5Mn1.5O4 materials, offering improved battery life and
thereby enhancing their potential for practical applications.
acknowledged_ssus:
- _id: EM-Fac
- _id: NanoFab
acknowledgement: 'This work was supported by the European Commission-financed project
IntelLigent (HORIZON-CL5-2021-D2-01-02) with project ID number 101069765. In collaboration
with ALBA staff, the operando SXRD and XAS experiments were performed at BL-16-NOTOS
beamline at ALBA Synchrotron Light Source (experiment number: 2023097765). This
research was supported by the Scientific Service Units (SSU) of the Institute of
Science and Technology Austria (ISTA) through resources provided by the Electron
Microscopy Facility (EMF) and the Nanofabrication Facility (NFF), and M.I. and S.H.
acknowledge financial support from ISTA and the Werner Siemens Foundation. Jordi
Jacas Biendicho acknowledges the fellowship RYC2021-034994-I, funded by MICIU/AEI/10.13039/501100011033
and the European Union «NextGenerationEU»/PRTR». Jordi Llorca is a Serra Húnter
Fellow and is grateful to projects MICIN/AEI/FEDER PID2021-124572OB-C31 and Maria
de Maeztu Units of Excellence Programme CEX2023-001300-M, and GC 2021 SGR 01061.'
article_number: e15962
article_processing_charge: Yes
article_type: original
author:
- first_name: Xingqi
full_name: Chang, Xingqi
last_name: Chang
- first_name: Carlos
full_name: Escudero, Carlos
last_name: Escudero
- first_name: Ashley P.
full_name: Black, Ashley P.
last_name: Black
- first_name: Sharona
full_name: Horta, Sharona
id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc
last_name: Horta
- first_name: Elías
full_name: Martínez, Elías
last_name: Martínez
- first_name: Xuan
full_name: Lu, Xuan
last_name: Lu
- first_name: Jordi
full_name: Llorca, Jordi
last_name: Llorca
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Jordi Jacas
full_name: Biendicho, Jordi Jacas
last_name: Biendicho
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: Chang X, Escudero C, Black AP, et al. Mitigating the rock-salt phase transformation
in disordered LNMO through synergetic solid-state AlF3/LiF modifications. Advanced
Science. 2026;13(11). doi:10.1002/advs.202515962
apa: Chang, X., Escudero, C., Black, A. P., Horta, S., Martínez, E., Lu, X., … Cabot,
A. (2026). Mitigating the rock-salt phase transformation in disordered LNMO through
synergetic solid-state AlF3/LiF modifications. Advanced Science. Wiley.
https://doi.org/10.1002/advs.202515962
chicago: Chang, Xingqi, Carlos Escudero, Ashley P. Black, Sharona Horta, Elías Martínez,
Xuan Lu, Jordi Llorca, Maria Ibáñez, Jordi Jacas Biendicho, and Andreu Cabot.
“Mitigating the Rock-Salt Phase Transformation in Disordered LNMO through Synergetic
Solid-State AlF3/LiF Modifications.” Advanced Science. Wiley, 2026. https://doi.org/10.1002/advs.202515962.
ieee: X. Chang et al., “Mitigating the rock-salt phase transformation in
disordered LNMO through synergetic solid-state AlF3/LiF modifications,” Advanced
Science, vol. 13, no. 11. Wiley, 2026.
ista: Chang X, Escudero C, Black AP, Horta S, Martínez E, Lu X, Llorca J, Ibáñez
M, Biendicho JJ, Cabot A. 2026. Mitigating the rock-salt phase transformation
in disordered LNMO through synergetic solid-state AlF3/LiF modifications. Advanced
Science. 13(11), e15962.
mla: Chang, Xingqi, et al. “Mitigating the Rock-Salt Phase Transformation in Disordered
LNMO through Synergetic Solid-State AlF3/LiF Modifications.” Advanced Science,
vol. 13, no. 11, e15962, Wiley, 2026, doi:10.1002/advs.202515962.
short: X. Chang, C. Escudero, A.P. Black, S. Horta, E. Martínez, X. Lu, J. Llorca,
M. Ibáñez, J.J. Biendicho, A. Cabot, Advanced Science 13 (2026).
das_tickbox: '1'
dataavailabilitystatement: The data that support the findings of this study are available
from the corresponding author upon reasonable request
date_created: 2025-12-21T23:01:35Z
date_published: 2026-02-23T00:00:00Z
date_updated: 2026-07-23T06:18:43Z
day: '23'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1002/advs.202515962
external_id:
pmid:
- '41388041'
file:
- access_level: open_access
checksum: 37adc3eff9ad9f8f9b55cfe66883f36d
content_type: application/pdf
creator: dernst
date_created: 2026-07-23T06:15:51Z
date_updated: 2026-07-23T06:15:51Z
file_id: '22387'
file_name: 2026_AdvancedScience_Chang.pdf
file_size: 6353217
relation: main_file
success: 1
file_date_updated: 2026-07-23T06:15:51Z
fulldoi: https://doi.org/10.1002/advs.202515962
has_accepted_license: '1'
intvolume: ' 13'
issue: '11'
keyword:
- disordered spinel LiNi0.5Mn1.5O4 (LNMO)
- generation 3b batteries
- operando SXRD
- operando XAS
- rock-salt
- solid-state synthesis
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
Semiconductors for Waste Heat Recovery'
publication: Advanced Science
publication_identifier:
eissn:
- 2198-3844
publication_status: published
publisher: Wiley
quality_controlled: '1'
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Mitigating the rock-salt phase transformation in disordered LNMO through synergetic
solid-state AlF3/LiF modifications
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20859'
abstract:
- lang: eng
text: Effective immune responses rely on the efficient migration of leukocytes.
Yet, how temperature regulates migration dynamics at the single-cell level has
remained poorly understood. Using zebrafish embryos and mouse tissue explants,
we found that temperature positively regulates leukocyte migration speed, exploration,
and arrival frequencies to wounds and lymph vessels. Complementary 2D and 3D cultures
revealed that this thermokinetic control of cell migration is conserved across
immune cell types, independently of the 3D tissue environment. By applying precise
(sub-)cellular temperature modulation, we identified a rapid and reversible thermo-response
that depends on myosin II activity. Small physiological increases in temperature
(1°C –2°C), as present during fever-like conditions, profoundly increased immune
responses by accelerating arrival times at lymphatic vessels and tissue wounds.
These findings identify myosin-II-dependent actomyosin contractility as a critical
mechanical structure regulating single-cell thermo-adaptability, with physiological
implications for tuning the speed of immune responses in vivo.
acknowledged_ssus:
- _id: NanoFab
acknowledgement: 'The authors would like to acknowledge the Super Resolution Light
Microcopy and Nanoscopy (SLN) Facility of ICFO for their support with imaging experiments,
Johann Osmond (Nanofabrication laboratory, ICFO) for the design and production of
molds for generating confinement coverslip, Merche Rivas for cell culture of immune
cells and further support from the CRG Core Facilities for Genomics and Advanced
Light Microscopy. We would like to thank Michael Sixt for discussions on this work
and the Quidant, Ruprecht, and Wieser lab members for critical reading of the manuscript.
This research was supported by the Scientific Service Units (SSU) of IST-Austria
through resources provided by the Nanofabrication Facility (NFF). C.A. acknowledges
the funding from the European Union’s Horizon 2020 research and innovation programme
under the Marie Skłodowska-Curie grant agreement no 847517 and V.V. from the ICFOstepstone
– PhD Programme funded by the European Union’s Horizon 2020 research and innovation
programme under the Marie Skłodowska-Curie grant agreement no 665884. S.W. acknowledges
support through the Spanish Ministry of Economy and Competitiveness via MINECO’s
Plan Nacional (BFU2017-86296-P). V.R. acknowledges funding from the European Union’s
HORIZON-EIC-2021-PATHFINDEROPEN program under grant agreement no. 101046620 and
European Union''s Horizon Europe program under the grant agreement no. 101072123.
E.K. acknowledges funding by a fellowship of the Ministry of Innovation, Science
and Research of North-Rhine-Westphalia (AZ: 421-8.03.03.02-137069) and the Deutsche
Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence
Strategy – EXC 2151 – 390873048 and by the TRA Life and Health (University of Bonn)
as part of the Excellence Strategy of the federal and state governments.'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Iván
full_name: Company-Garrido, Iván
last_name: Company-Garrido
- first_name: Alberto
full_name: Zurita Carpio, Alberto
last_name: Zurita Carpio
- first_name: Mariona
full_name: Colomer-Rosell, Mariona
last_name: Colomer-Rosell
- first_name: Bernard
full_name: Ciraulo, Bernard
last_name: Ciraulo
- first_name: Ronja
full_name: Molkenbur, Ronja
last_name: Molkenbur
- first_name: Peter
full_name: Lanzerstorfer, Peter
last_name: Lanzerstorfer
- first_name: Fabio
full_name: Pezzano, Fabio
last_name: Pezzano
- first_name: Costanza
full_name: Agazzi, Costanza
last_name: Agazzi
- first_name: Robert
full_name: Hauschild, Robert
id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
last_name: Hauschild
orcid: 0000-0001-9843-3522
- first_name: Saumey
full_name: Jain, Saumey
last_name: Jain
- first_name: Jeroen M.
full_name: Jacques, Jeroen M.
last_name: Jacques
- first_name: Valeria
full_name: Venturini, Valeria
last_name: Venturini
- first_name: Christian
full_name: Knapp, Christian
last_name: Knapp
- first_name: Yufei
full_name: Xie, Yufei
last_name: Xie
- first_name: Jack
full_name: Merrin, Jack
id: 4515C308-F248-11E8-B48F-1D18A9856A87
last_name: Merrin
orcid: 0000-0001-5145-4609
- first_name: Julian
full_name: Weghuber, Julian
last_name: Weghuber
- first_name: Marcel
full_name: Schaaf, Marcel
last_name: Schaaf
- first_name: Romain
full_name: Quidant, Romain
last_name: Quidant
- first_name: Eva
full_name: Kiermaier, Eva
id: 3EB04B78-F248-11E8-B48F-1D18A9856A87
last_name: Kiermaier
orcid: 0000-0001-6165-5738
- first_name: Jaime
full_name: Ortega Arroyo, Jaime
last_name: Ortega Arroyo
- first_name: Verena
full_name: Ruprecht, Verena
id: 4D71A03A-F248-11E8-B48F-1D18A9856A87
last_name: Ruprecht
orcid: 0000-0003-4088-8633
- first_name: Stefan
full_name: Wieser, Stefan
id: 355AA5A0-F248-11E8-B48F-1D18A9856A87
last_name: Wieser
orcid: 0000-0002-2670-2217
citation:
ama: Company-Garrido I, Zurita Carpio A, Colomer-Rosell M, et al. Myosin II regulates
cellular thermo-adaptability and the efficiency of immune responses. Developmental
Cell. 2026;61(2):356-371.e12. doi:10.1016/j.devcel.2025.10.006
apa: Company-Garrido, I., Zurita Carpio, A., Colomer-Rosell, M., Ciraulo, B., Molkenbur,
R., Lanzerstorfer, P., … Wieser, S. (2026). Myosin II regulates cellular thermo-adaptability
and the efficiency of immune responses. Developmental Cell. Elsevier. https://doi.org/10.1016/j.devcel.2025.10.006
chicago: Company-Garrido, Iván, Alberto Zurita Carpio, Mariona Colomer-Rosell, Bernard
Ciraulo, Ronja Molkenbur, Peter Lanzerstorfer, Fabio Pezzano, et al. “Myosin II
Regulates Cellular Thermo-Adaptability and the Efficiency of Immune Responses.”
Developmental Cell. Elsevier, 2026. https://doi.org/10.1016/j.devcel.2025.10.006.
ieee: I. Company-Garrido et al., “Myosin II regulates cellular thermo-adaptability
and the efficiency of immune responses,” Developmental Cell, vol. 61, no.
2. Elsevier, p. 356–371.e12, 2026.
ista: Company-Garrido I, Zurita Carpio A, Colomer-Rosell M, Ciraulo B, Molkenbur
R, Lanzerstorfer P, Pezzano F, Agazzi C, Hauschild R, Jain S, Jacques JM, Venturini
V, Knapp C, Xie Y, Merrin J, Weghuber J, Schaaf M, Quidant R, Kiermaier E, Ortega
Arroyo J, Ruprecht V, Wieser S. 2026. Myosin II regulates cellular thermo-adaptability
and the efficiency of immune responses. Developmental Cell. 61(2), 356–371.e12.
mla: Company-Garrido, Iván, et al. “Myosin II Regulates Cellular Thermo-Adaptability
and the Efficiency of Immune Responses.” Developmental Cell, vol. 61, no.
2, Elsevier, 2026, p. 356–371.e12, doi:10.1016/j.devcel.2025.10.006.
short: I. Company-Garrido, A. Zurita Carpio, M. Colomer-Rosell, B. Ciraulo, R. Molkenbur,
P. Lanzerstorfer, F. Pezzano, C. Agazzi, R. Hauschild, S. Jain, J.M. Jacques,
V. Venturini, C. Knapp, Y. Xie, J. Merrin, J. Weghuber, M. Schaaf, R. Quidant,
E. Kiermaier, J. Ortega Arroyo, V. Ruprecht, S. Wieser, Developmental Cell 61
(2026) 356–371.e12.
das_tickbox: '1'
dataavailabilitystatement: "This study did not generate new unique reagents. Data
are available upon request.\r\n•The custom-made codes used in this study are available
at: https://github.com/mcolomerr/cell_thermo https://github.com/Stefan1980sol/Lymph_entry_simu\r\n•
Any additional information required to reanalyze the data reported in this paper
is available from the lead contact upon request."
date_created: 2025-12-28T23:01:27Z
date_published: 2026-02-11T00:00:00Z
date_updated: 2026-07-23T06:27:15Z
day: '11'
ddc:
- '570'
department:
- _id: Bio
- _id: NanoFab
doi: 10.1016/j.devcel.2025.10.006
external_id:
pmid:
- '41192429'
file:
- access_level: open_access
checksum: 52fd52d2d19a4514f8fcc1b40f420ca2
content_type: application/pdf
creator: dernst
date_created: 2026-07-23T06:26:25Z
date_updated: 2026-07-23T06:26:25Z
file_id: '22388'
file_name: 2026_DevelopmentalCell_CompanyGarrido.pdf
file_size: 12342817
relation: main_file
success: 1
file_date_updated: 2026-07-23T06:26:25Z
fulldoi: https://doi.org/10.1016/j.devcel.2025.10.006
has_accepted_license: '1'
intvolume: ' 61'
issue: '2'
keyword:
- thermobiology
- cell migration
- thermo-adaptability of immune cells
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 356-371.e12
pmid: 1
publication: Developmental Cell
publication_identifier:
eissn:
- 1878-1551
issn:
- 1534-5807
publication_status: published
publisher: Elsevier
quality_controlled: '1'
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Myosin II regulates cellular thermo-adaptability and the efficiency of immune
responses
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 61
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20933'
abstract:
- lang: eng
text: Photo-responsive systems based on azobenzenes usually require UV light for
E→Z isomerization, limiting their applicability, especially in biomedical contexts.
Disequilibration by sensitization of azobenzene under confinement (DESC) has recently
emerged as a supramolecular strategy to bypass this limitation without the need
to derivatize the azobenzene scaffold. Here, we expand DESC to water-soluble azopolymers
obtained by RAFT polymerization and systematically investigate the interplay between
the polymer structure and DESC efficiency. Using this approach, we achieved as
much as 85% of the direct photoexcitation (UV) switching efficiency, while utilizing
low-energy (yellow) light. These results establish general design principles for
combining DESC with polymeric systems, opening new opportunities for the development
of functional materials driven with low-energy light.
acknowledgement: "This work is supported by the European Research Council (Consolidator
Grand project MULTIMODAL, no. 101045223), the Research Council of Finland Center
of Excellence “Life-Inspired Hybrid Materials Research” (LIBER, no. 346107) and
the Research Council of Finland Flagship Programme on Photonics Research and Innovation
(PREIN, no. 320165). H.M. gratefully acknowledges Oommen Podivan for providing access
to their Zetasizer for DLS measurements and the Faculty of Medicine and Health Technologies
at Tampere University for access to their laboratory facilities. R.K. acknowledges
funding through the Award for Research Cooperation and High Excellence in Science
(ARCHES) from the Federal German Ministry for Education and Research. S.H. acknowledges
financial support through the profi7 profiling action SUSBIO from the Research Council
of Finland (no. 352754).\r\nOpen access publishing facilitated by Tampereen yliopisto
ja Tampereen ammattikorkeakoulu, as part of the Wiley - FinELib agreement."
article_number: e23447
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Henning Jörn
full_name: Meteling, Henning Jörn
last_name: Meteling
- first_name: Julius
full_name: Gemen, Julius
last_name: Gemen
- first_name: Satu
full_name: Häkkinen, Satu
last_name: Häkkinen
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
- first_name: Arri
full_name: Priimagi, Arri
last_name: Priimagi
citation:
ama: Meteling HJ, Gemen J, Häkkinen S, Klajn R, Priimagi A. Sensitized disequilibration
of water-soluble azopolymers. Angewandte Chemie International Edition.
2026;65(7). doi:10.1002/anie.202523447
apa: Meteling, H. J., Gemen, J., Häkkinen, S., Klajn, R., & Priimagi, A. (2026).
Sensitized disequilibration of water-soluble azopolymers. Angewandte Chemie
International Edition. Wiley. https://doi.org/10.1002/anie.202523447
chicago: Meteling, Henning Jörn, Julius Gemen, Satu Häkkinen, Rafal Klajn, and Arri
Priimagi. “Sensitized Disequilibration of Water-Soluble Azopolymers.” Angewandte
Chemie International Edition. Wiley, 2026. https://doi.org/10.1002/anie.202523447.
ieee: H. J. Meteling, J. Gemen, S. Häkkinen, R. Klajn, and A. Priimagi, “Sensitized
disequilibration of water-soluble azopolymers,” Angewandte Chemie International
Edition, vol. 65, no. 7. Wiley, 2026.
ista: Meteling HJ, Gemen J, Häkkinen S, Klajn R, Priimagi A. 2026. Sensitized disequilibration
of water-soluble azopolymers. Angewandte Chemie International Edition. 65(7),
e23447.
mla: Meteling, Henning Jörn, et al. “Sensitized Disequilibration of Water-Soluble
Azopolymers.” Angewandte Chemie International Edition, vol. 65, no. 7,
e23447, Wiley, 2026, doi:10.1002/anie.202523447.
short: H.J. Meteling, J. Gemen, S. Häkkinen, R. Klajn, A. Priimagi, Angewandte Chemie
International Edition 65 (2026).
das_tickbox: '1'
dataavailabilitystatement: The data that support the findings of this study are available
in the Supporting Information of this article.
date_created: 2026-01-04T23:01:35Z
date_published: 2026-02-09T00:00:00Z
date_updated: 2026-07-23T06:53:14Z
day: '09'
ddc:
- '540'
department:
- _id: RaKl
doi: 10.1002/anie.202523447
external_id:
pmid:
- '41437660'
file:
- access_level: open_access
checksum: 8ecd7578e6c7669f7ed729414ca207ca
content_type: application/pdf
creator: dernst
date_created: 2026-07-23T06:51:16Z
date_updated: 2026-07-23T06:51:16Z
file_id: '22391'
file_name: 2026_AngewChemieInt_Meteling.pdf
file_size: 1879669
relation: main_file
success: 1
file_date_updated: 2026-07-23T06:51:16Z
fulldoi: https://doi.org/10.1002/anie.202523447
has_accepted_license: '1'
intvolume: ' 65'
issue: '7'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 7bf494dc-9f16-11ee-852c-9fe37e3f50f0
grant_number: '713490'
name: 'Integrating Molecular Photoswitches with PH-Feedback Mechanisms: Towards
Life-like Materials'
publication: Angewandte Chemie International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Sensitized disequilibration of water-soluble azopolymers
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 65
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20925'
abstract:
- lang: eng
text: 'We prove normal typicality and dynamical typicality for a (centered) random
block-band matrix model with block-dependent variances. A key feature of our model
is that we achieve intermediate equilibration times, an aspect that has not been
proven rigorously in any model before. Our proof builds on recently established
concentration estimates for products of resolvents of Wigner type random matrices
(Erdős and Riabov in Commun Math Phys 405(12): 282, 2024) and an intricate analysis
of the deterministic approximation.'
acknowledgement: L.E. and J.H. are supported by the ERC Advanced Grant “RMTBeyond”
No. 101020331. Moreover, J.H. acknowledges (partial) financial support by the ERC
Consolidator Grant “ProbQuant” (jointly with the Swiss State Secretariat for Education,
Research and Innovation). C.V. was (partially) supported by the German Academic
Scholarship Foundation and the Deutsche Forschungsgemeinschaft (DFG, German Research
Foundation) – TRR 352 – Project-ID 470903074. Moreover, C.V. acknowledges (partial)
financial support by the ERC Starting Grant “FermiMath" No. 101040991 and the ERC
Consolidator Grant “RAMBAS” No. 10104424, funded by the European Union. Open access
funding provided by Institute of Science and Technology (IST Austria).
article_number: '5'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Sven Joscha
full_name: Henheik, Sven Joscha
id: 31d731d7-d235-11ea-ad11-b50331c8d7fb
last_name: Henheik
orcid: 0000-0003-1106-327X
- first_name: Cornelia
full_name: Vogel, Cornelia
id: 1cd0554a-ea28-11f0-9f40-ff76440883cd
last_name: Vogel
citation:
ama: Erdös L, Henheik SJ, Vogel C. Normal typicality and dynamical typicality for
a random block-band matrix model. Letters in Mathematical Physics. 2026;116.
doi:10.1007/s11005-025-02037-5
apa: Erdös, L., Henheik, S. J., & Vogel, C. (2026). Normal typicality and dynamical
typicality for a random block-band matrix model. Letters in Mathematical Physics.
Springer Nature. https://doi.org/10.1007/s11005-025-02037-5
chicago: Erdös, László, Sven Joscha Henheik, and Cornelia Vogel. “Normal Typicality
and Dynamical Typicality for a Random Block-Band Matrix Model.” Letters in
Mathematical Physics. Springer Nature, 2026. https://doi.org/10.1007/s11005-025-02037-5.
ieee: L. Erdös, S. J. Henheik, and C. Vogel, “Normal typicality and dynamical typicality
for a random block-band matrix model,” Letters in Mathematical Physics,
vol. 116. Springer Nature, 2026.
ista: Erdös L, Henheik SJ, Vogel C. 2026. Normal typicality and dynamical typicality
for a random block-band matrix model. Letters in Mathematical Physics. 116, 5.
mla: Erdös, László, et al. “Normal Typicality and Dynamical Typicality for a Random
Block-Band Matrix Model.” Letters in Mathematical Physics, vol. 116, 5,
Springer Nature, 2026, doi:10.1007/s11005-025-02037-5.
short: L. Erdös, S.J. Henheik, C. Vogel, Letters in Mathematical Physics 116 (2026).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: The Matlab code used to generate the datasets of the provided
examples is available from the corresponding author on request.
date_created: 2026-01-04T23:01:33Z
date_published: 2026-02-01T00:00:00Z
date_updated: 2026-07-23T06:42:28Z
day: '01'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1007/s11005-025-02037-5
ec_funded: 1
external_id:
pmid:
- '41459414'
file:
- access_level: open_access
checksum: f2021f8f6d38491948b94a7765a64d0b
content_type: application/pdf
creator: dernst
date_created: 2026-07-23T06:42:01Z
date_updated: 2026-07-23T06:42:01Z
file_id: '22390'
file_name: 2026_LettersMathPhysics_Erdoes.pdf
file_size: 602526
relation: main_file
success: 1
file_date_updated: 2026-07-23T06:42:01Z
fulldoi: https://doi.org/10.1007/s11005-025-02037-5
has_accepted_license: '1'
intvolume: ' 116'
language:
- iso: eng
mathsc:
- 60B20
- 82C10
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
call_identifier: H2020
grant_number: '101020331'
name: Random matrices beyond Wigner-Dyson-Mehta
publication: Letters in Mathematical Physics
publication_identifier:
eissn:
- 1573-0530
issn:
- 0377-9017
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Normal typicality and dynamical typicality for a random block-band matrix model
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 116
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20924'
abstract:
- lang: eng
text: "Pioneer transcription factors (TFs) possess the ability to read out DNA motifs
embedded within nucleosomes, driving changes in gene expression during cellular
differentiation and reprogramming. Here, we present selected engagement on nucleosome
sequencing (SeEN-seq), a protocol designed to systematically identify potential
TF-binding sites on the nucleosome. We describe steps for nucleosome library assembly,
SeEN-seq assay, and cryoelectron microscopy (cryo-EM) sample preparation. This
protocol facilitates the preparation of homogeneous pioneer TF-nucleosome complexes
for cryo-EM structure determination using single-particle analysis.\r\nFor complete
details on the use and execution of this protocol, please refer to Michael et
al.1"
acknowledgement: We thank R.H. Kim, A. Casper, and R. Gautsch for sequencing at the
NGS facility (RRID:SCR_025746). K.T. is an Honorary Professor at the Department
of Biology, Ludwig-Maximilians-University, Munich, Germany. This study was funded
by European Research Council grant ERC-CoG-818556 TotipotentZygotChrom (K.T.), Max
Planck Society (K.T.), and ERC Starting Grant “ChromaChrono” 101162145 (A.K.M.).
article_number: '104295'
article_processing_charge: Yes
article_type: original
author:
- first_name: Wataru
full_name: Kobayashi, Wataru
last_name: Kobayashi
- first_name: Alicia
full_name: Michael, Alicia
id: 6437c950-2a03-11ee-914d-d6476dd7b75c
last_name: Michael
orcid: 0000-0002-6080-839X
- first_name: Siwat
full_name: Ruangroengkulrith, Siwat
last_name: Ruangroengkulrith
- first_name: Maximilian
full_name: Kümmecke, Maximilian
last_name: Kümmecke
- first_name: Kikuë
full_name: Tachibana, Kikuë
last_name: Tachibana
citation:
ama: Kobayashi W, Michael AK, Ruangroengkulrith S, Kümmecke M, Tachibana K. Protocol
for integrative analysis of transcription factor-nucleosome interactions using
SeEN-seq and cryo-EM structure determination. STAR Protocols. 2026;7(1).
doi:10.1016/j.xpro.2025.104295
apa: Kobayashi, W., Michael, A. K., Ruangroengkulrith, S., Kümmecke, M., & Tachibana,
K. (2026). Protocol for integrative analysis of transcription factor-nucleosome
interactions using SeEN-seq and cryo-EM structure determination. STAR Protocols.
Elsevier. https://doi.org/10.1016/j.xpro.2025.104295
chicago: Kobayashi, Wataru, Alicia K. Michael, Siwat Ruangroengkulrith, Maximilian
Kümmecke, and Kikuë Tachibana. “Protocol for Integrative Analysis of Transcription
Factor-Nucleosome Interactions Using SeEN-Seq and Cryo-EM Structure Determination.”
STAR Protocols. Elsevier, 2026. https://doi.org/10.1016/j.xpro.2025.104295.
ieee: W. Kobayashi, A. K. Michael, S. Ruangroengkulrith, M. Kümmecke, and K. Tachibana,
“Protocol for integrative analysis of transcription factor-nucleosome interactions
using SeEN-seq and cryo-EM structure determination,” STAR Protocols, vol.
7, no. 1. Elsevier, 2026.
ista: Kobayashi W, Michael AK, Ruangroengkulrith S, Kümmecke M, Tachibana K. 2026.
Protocol for integrative analysis of transcription factor-nucleosome interactions
using SeEN-seq and cryo-EM structure determination. STAR Protocols. 7(1), 104295.
mla: Kobayashi, Wataru, et al. “Protocol for Integrative Analysis of Transcription
Factor-Nucleosome Interactions Using SeEN-Seq and Cryo-EM Structure Determination.”
STAR Protocols, vol. 7, no. 1, 104295, Elsevier, 2026, doi:10.1016/j.xpro.2025.104295.
short: W. Kobayashi, A.K. Michael, S. Ruangroengkulrith, M. Kümmecke, K. Tachibana,
STAR Protocols 7 (2026).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: Raw SeEN-seq data of ESRRB nucleosome binding have been
deposited on the Sequence Read Achieve database under the accession PRJNA1305216.
Example analysis scripts and input files for SeEN-seq analysis can be found at https://doi.org/10.5281/zenodo.17665082.
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title: Protocol for integrative analysis of transcription factor-nucleosome interactions
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