---
_id: '14256'
abstract:
- lang: eng
  text: "Context. Space asteroseismology is revolutionizing our knowledge of the internal
    structure and dynamics of stars. A breakthrough is ongoing with the recent discoveries
    of signatures of strong magnetic fields in the core of red giant stars. The key
    signature for such a detection is the asymmetry these fields induce in the frequency
    splittings of observed dipolar mixed gravito-acoustic modes.\r\nAims. We investigate
    the ability of the observed asymmetries of the frequency splittings of dipolar
    mixed modes to constrain the geometrical properties of deep magnetic fields.\r\nMethods.
    We used the powerful analytical Racah-Wigner algebra used in quantum mechanics
    to characterize the geometrical couplings of dipolar mixed oscillation modes with
    various realistically plausible topologies of fossil magnetic fields. We also
    computed the induced perturbation of their frequencies.\r\nResults. First, in
    the case of an oblique magnetic dipole, we provide the exact analytical expression
    of the asymmetry as a function of the angle between the rotation and magnetic
    axes. Its value provides a direct measure of this angle. Second, considering a
    combination of axisymmetric dipolar and quadrupolar fields, we show how the asymmetry
    is blind to the unraveling of the relative strength and sign of each component.
    Finally, in the case of a given multipole, we show that a negative asymmetry is
    a signature of non-axisymmetric topologies.\r\nConclusions. Asymmetries of dipolar
    mixed modes provide a key bit of information on the geometrical topology of deep
    fossil magnetic fields, but this is insufficient on its own. Asteroseismic constraints
    should therefore be combined with spectropolarimetric observations and numerical
    simulations, which aim to predict the more probable stable large-scale geometries."
acknowledgement: The authors are grateful to the referee for her/his detailed and
  constructive report, which has allowed us to improve our article. S. M. acknowledges
  support from the CNES GOLF-SOHO and PLATO grants at CEA/DAp and PNPS (CNRS/INSU).
  We thank R. A. Garcia for fruitful discussions and suggestions.
article_number: L9
article_processing_charge: Yes (in subscription journal)
article_type: letter_note
arxiv: 1
author:
- first_name: S.
  full_name: Mathis, S.
  last_name: Mathis
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
citation:
  ama: 'Mathis S, Bugnet LA. Asymmetries of frequency splittings of dipolar mixed
    modes: A window on the topology of deep magnetic fields. <i>Astronomy &#38; Astrophysics</i>.
    2023;676. doi:<a href="https://doi.org/10.1051/0004-6361/202346832">10.1051/0004-6361/202346832</a>'
  apa: 'Mathis, S., &#38; Bugnet, L. A. (2023). Asymmetries of frequency splittings
    of dipolar mixed modes: A window on the topology of deep magnetic fields. <i>Astronomy
    &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202346832">https://doi.org/10.1051/0004-6361/202346832</a>'
  chicago: 'Mathis, S., and Lisa Annabelle Bugnet. “Asymmetries of Frequency Splittings
    of Dipolar Mixed Modes: A Window on the Topology of Deep Magnetic Fields.” <i>Astronomy
    &#38; Astrophysics</i>. EDP Sciences, 2023. <a href="https://doi.org/10.1051/0004-6361/202346832">https://doi.org/10.1051/0004-6361/202346832</a>.'
  ieee: 'S. Mathis and L. A. Bugnet, “Asymmetries of frequency splittings of dipolar
    mixed modes: A window on the topology of deep magnetic fields,” <i>Astronomy &#38;
    Astrophysics</i>, vol. 676. EDP Sciences, 2023.'
  ista: 'Mathis S, Bugnet LA. 2023. Asymmetries of frequency splittings of dipolar
    mixed modes: A window on the topology of deep magnetic fields. Astronomy &#38;
    Astrophysics. 676, L9.'
  mla: 'Mathis, S., and Lisa Annabelle Bugnet. “Asymmetries of Frequency Splittings
    of Dipolar Mixed Modes: A Window on the Topology of Deep Magnetic Fields.” <i>Astronomy
    &#38; Astrophysics</i>, vol. 676, L9, EDP Sciences, 2023, doi:<a href="https://doi.org/10.1051/0004-6361/202346832">10.1051/0004-6361/202346832</a>.'
  short: S. Mathis, L.A. Bugnet, Astronomy &#38; Astrophysics 676 (2023).
das_tickbox: '1'
date_created: 2023-09-03T22:01:15Z
date_published: 2023-08-01T00:00:00Z
date_updated: 2026-07-08T06:45:55Z
day: '01'
ddc:
- '520'
department:
- _id: LiBu
doi: 10.1051/0004-6361/202346832
external_id:
  arxiv:
  - '2306.11587'
  isi:
  - '001046037700007'
file:
- access_level: open_access
  checksum: 7b30d26fb2b7bcb5b5be1414950615f9
  content_type: application/pdf
  creator: dernst
  date_created: 2023-09-06T07:13:19Z
  date_updated: 2023-09-06T07:13:19Z
  file_id: '14271'
  file_name: 2023_AstronomyAstrophysics_Mathis.pdf
  file_size: 458120
  relation: main_file
  success: 1
file_date_updated: 2023-09-06T07:13:19Z
has_accepted_license: '1'
intvolume: '       676'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '08'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Asymmetries of frequency splittings of dipolar mixed modes: A window on the
  topology of deep magnetic fields'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 676
year: '2023'
...
---
OA_place: publisher
_id: '14547'
abstract:
- lang: eng
  text: "Superconductor-semiconductor heterostructures currently capture a significant
    amount of research interest and they serve as the physical platform in many proposals
    towards topological quantum computation.\r\nDespite being under extensive investigations,
    historically using transport techniques, the basic properties of the interface
    between the superconductor and the semiconductor remain to be understood.\r\n\r\nIn
    this thesis, two separate studies on the Al-InAs heterostructures are reported
    with the first focusing on the physics of the material motivated by the emergence
    of a new phase, the Bogoliubov-Fermi surface. \r\nThe second focuses on a technological
    application, a gate-tunable Josephson parametric amplifier.\r\n\r\nIn the first
    study, we investigate the hypothesized unconventional nature of the induced superconductivity
    at the interface between the Al thin film and the InAs quantum well.\r\nWe embed
    a two-dimensional Al-InAs hybrid system in a resonant microwave circuit allowing
    measurements of change in inductance.\r\nThe behaviour of the resonance in a range
    of temperature and in-plane magnetic field has been studied and compared with
    the theory of conventional s-wave superconductor and a two-component theory that
    includes both contribution of the $s$-wave pairing in Al and the intraband $p
    \\pm ip$ pairing in InAs.\r\nMeasuring the temperature dependence of resonant
    frequency, no discrepancy is found between data and the conventional theory.\r\nWe
    observe the breakdown of superconductivity due to an applied magnetic field which
    contradicts the conventional theory.\r\nIn contrast, the data can be captured
    quantitatively by fitting to a two-component model.\r\nWe find the evidence of
    the intraband $p \\pm ip$ pairing in the InAs and the emergence of the Bogoliubov-Fermi
    surfaces due to magnetic field with the characteristic value $B^* = 0.33~\\mathrm{T}$.\r\nFrom
    the fits, the sheet resistance of Al, the carrier density and mobility in InAs
    are determined.\r\nBy systematically studying the anisotropy of the circuit response,
    we find weak anisotropy for $B < B^*$ and increasingly strong anisotropy for $B
    > B^*$ resulting in a pronounced two-lobe structure in polar plot of frequency
    versus field angle.\r\nStrong resemblance between the field dependence of dissipation
    and superfluid density hints at a hidden signature of the Bogoliubov-Fermi surface
    that is burried in the dissipation data.\r\n\r\nIn the second study, we realize
    a parametric amplifier with a Josephson field effect transistor as the active
    element.\r\nThe device's modest construction consists of a gated SNS weak link
    embedded at the center of a coplanar waveguide resonator.\r\nBy applying a gate
    voltage, the resonant frequency is field-effect tunable over a range of 2 GHz.\r\nModelling
    the JoFET minimally as a parallel RL circuit, the dissipation introduced by the
    JoFET can be quantitatively related to the gate voltage.\r\nWe observed gate-tunable
    Kerr nonlinearity qualitatively in line with expectation.\r\nThe JoFET amplifier
    has 20 dB of gain, 4 MHz of instantaneous bandwidth, and a 1dB compression point
    of -125.5 dBm when operated at a fixed resonant frequency.\r\nIn general, the
    signal-to-noise ratio is improved by 5-7 dB when the JoFET amplifier is activated
    compared.\r\nThe noise of the measurement chain and insertion loss of relevant
    circuit elements are calibrated to determine the expected and the real noise performance
    of the JoFET amplifier.\r\nAs a quantification of the noise performance, the measured
    total input-referred noise of the JoFET amplifier is in good agreement with the
    estimated expectation which takes device loss into account.\r\nWe found that the
    noise performance of the device reported in this document approaches one photon
    of total input-referred added noise which is the quantum limit imposed in nondegenerate
    parametric amplifier."
acknowledged_ssus:
- _id: NanoFab
- _id: Bio
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Duc T
  full_name: Phan, Duc T
  id: 29C8C0B4-F248-11E8-B48F-1D18A9856A87
  last_name: Phan
citation:
  ama: Phan DT. Resonant microwave spectroscopy of Al-InAs. 2023. doi:<a href="https://doi.org/10.15479/14547">10.15479/14547</a>
  apa: Phan, D. T. (2023). <i>Resonant microwave spectroscopy of Al-InAs</i>. Institute
    of Science and Technology Austria. <a href="https://doi.org/10.15479/14547">https://doi.org/10.15479/14547</a>
  chicago: Phan, Duc T. “Resonant Microwave Spectroscopy of Al-InAs.” Institute of
    Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/14547">https://doi.org/10.15479/14547</a>.
  ieee: D. T. Phan, “Resonant microwave spectroscopy of Al-InAs,” Institute of Science
    and Technology Austria, 2023.
  ista: Phan DT. 2023. Resonant microwave spectroscopy of Al-InAs. Institute of Science
    and Technology Austria.
  mla: Phan, Duc T. <i>Resonant Microwave Spectroscopy of Al-InAs</i>. Institute of
    Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/14547">10.15479/14547</a>.
  short: D.T. Phan, Resonant Microwave Spectroscopy of Al-InAs, Institute of Science
    and Technology Austria, 2023.
corr_author: '1'
date_created: 2023-11-17T13:45:26Z
date_published: 2023-11-16T00:00:00Z
date_updated: 2026-07-08T08:38:43Z
day: '16'
ddc:
- '530'
degree_awarded: PhD
department:
- _id: GradSch
- _id: AnHi
doi: 10.15479/14547
file:
- access_level: open_access
  checksum: db0c37d213bc002125bd59690e9db246
  content_type: application/pdf
  creator: pduc
  date_created: 2023-11-17T13:36:44Z
  date_updated: 2023-11-22T09:46:06Z
  file_id: '14548'
  file_name: Phan_Thesis_pdfa.pdf
  file_size: 34828019
  relation: main_file
- access_level: closed
  checksum: 8d3bd6afa279a0078ffd13e06bb6d56d
  content_type: application/zip
  creator: pduc
  date_created: 2023-11-17T13:44:53Z
  date_updated: 2023-11-17T13:47:54Z
  file_id: '14549'
  file_name: dissertation_src.zip
  file_size: 279319709
  relation: source_file
file_date_updated: 2023-11-22T09:46:06Z
has_accepted_license: '1'
keyword:
- superconductor-semiconductor
- superconductivity
- Al
- InAs
- p-wave
- superconductivity
- JPA
- microwave
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '11'
oa: 1
oa_version: Published Version
page: '80'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '10851'
    relation: part_of_dissertation
    status: public
  - id: '13264'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
title: Resonant microwave spectroscopy of Al-InAs
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2023'
...
---
_id: '14749'
abstract:
- lang: eng
  text: We unveil a powerful method for the stabilization of laser injection locking
    based on sensing variations in the output beam ellipticity of an optically seeded
    laser. The effect arises due to an interference between the seeding beam and the
    injected laser output. We demonstrate the method for a commercial semiconductor
    laser without the need for any internal changes to the readily operational injection
    locked laser system that was used. The method can also be used to increase the
    mode-hop free tuning range of lasers, and has the potential to fill a void in
    the low-noise laser industry.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Umang
  full_name: Mishra, Umang
  id: 4328fa4c-f128-11eb-9611-c107b0fe4d51
  last_name: Mishra
- first_name: Vyacheslav
  full_name: Li, Vyacheslav
  id: 3A4FAA92-F248-11E8-B48F-1D18A9856A87
  last_name: Li
- first_name: Sebastian
  full_name: Wald, Sebastian
  id: 133F200A-B015-11E9-AD41-0EDAE5697425
  last_name: Wald
  orcid: 0000-0002-5869-1604
- first_name: Sofya
  full_name: Agafonova, Sofya
  id: 09501ff6-dca7-11ea-a8ae-b3e0b9166e80
  last_name: Agafonova
  orcid: 0000-0003-0582-2946
- first_name: Fritz R
  full_name: Diorico, Fritz R
  id: 2E054C4C-F248-11E8-B48F-1D18A9856A87
  last_name: Diorico
  orcid: 0000-0002-4947-8924
- first_name: Onur
  full_name: Hosten, Onur
  id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
  last_name: Hosten
  orcid: 0000-0002-2031-204X
citation:
  ama: Mishra U, Li V, Wald S, Agafonova S, Diorico FR, Hosten O. Monitoring and active
    stabilization of laser injection locking using beam ellipticity. <i>Optics Letters</i>.
    2023;48(15):3973-3976. doi:<a href="https://doi.org/10.1364/ol.495553">10.1364/ol.495553</a>
  apa: Mishra, U., Li, V., Wald, S., Agafonova, S., Diorico, F. R., &#38; Hosten,
    O. (2023). Monitoring and active stabilization of laser injection locking using
    beam ellipticity. <i>Optics Letters</i>. Optica Publishing Group. <a href="https://doi.org/10.1364/ol.495553">https://doi.org/10.1364/ol.495553</a>
  chicago: Mishra, Umang, Vyacheslav Li, Sebastian Wald, Sofia Agafonova, Fritz R
    Diorico, and Onur Hosten. “Monitoring and Active Stabilization of Laser Injection
    Locking Using Beam Ellipticity.” <i>Optics Letters</i>. Optica Publishing Group,
    2023. <a href="https://doi.org/10.1364/ol.495553">https://doi.org/10.1364/ol.495553</a>.
  ieee: U. Mishra, V. Li, S. Wald, S. Agafonova, F. R. Diorico, and O. Hosten, “Monitoring
    and active stabilization of laser injection locking using beam ellipticity,” <i>Optics
    Letters</i>, vol. 48, no. 15. Optica Publishing Group, pp. 3973–3976, 2023.
  ista: Mishra U, Li V, Wald S, Agafonova S, Diorico FR, Hosten O. 2023. Monitoring
    and active stabilization of laser injection locking using beam ellipticity. Optics
    Letters. 48(15), 3973–3976.
  mla: Mishra, Umang, et al. “Monitoring and Active Stabilization of Laser Injection
    Locking Using Beam Ellipticity.” <i>Optics Letters</i>, vol. 48, no. 15, Optica
    Publishing Group, 2023, pp. 3973–76, doi:<a href="https://doi.org/10.1364/ol.495553">10.1364/ol.495553</a>.
  short: U. Mishra, V. Li, S. Wald, S. Agafonova, F.R. Diorico, O. Hosten, Optics
    Letters 48 (2023) 3973–3976.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: Data underlying the results presented in this paper are
  not publicly available at this time but may be obtained from the authors upon reasonable
  request.
date_created: 2024-01-08T13:01:46Z
date_published: 2023-07-21T00:00:00Z
date_updated: 2026-07-08T08:41:47Z
day: '21'
department:
- _id: OnHo
doi: 10.1364/ol.495553
external_id:
  arxiv:
  - '2212.01266'
  isi:
  - '001051044600008'
intvolume: '        48'
isi: 1
issue: '15'
keyword:
- Atomic and Molecular Physics
- and Optics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2212.01266
month: '07'
oa: 1
oa_version: Preprint
page: 3973-3976
publication: Optics Letters
publication_identifier:
  eissn:
  - 1539-4794
  issn:
  - 0146-9592
publication_status: published
publisher: Optica Publishing Group
quality_controlled: '1'
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: no
title: Monitoring and active stabilization of laser injection locking using beam ellipticity
type: journal_article
user_id: 68b8ca59-c5b3-11ee-8790-cd641c68093d
volume: 48
year: '2023'
...
---
_id: '13233'
abstract:
- lang: eng
  text: We study the impact of finite-range physics on the zero-range-model analysis
    of three-body recombination in ultracold atoms. We find that temperature dependence
    of the zero-range parameters can vary from one set of measurements to another
    as it may be driven by the distribution of error bars in the experiment, and not
    by the underlying three-body physics. To study finite-temperature effects in three-body
    recombination beyond the zero-range physics, we introduce and examine a finite-range
    model based upon a hyperspherical formalism. The systematic error discussed in
    this Letter may provide a significant contribution to the error bars of measured
    three-body parameters.
acknowledgement: We thank Jan Arlt, Hans-Werner Hammer, and Karsten Riisager for useful
  discussions. M.L. acknowledges support by the European Research Council (ERC) Starting
  Grant No. 801770 (ANGULON).
article_number: L061304
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Sofya
  full_name: Agafonova, Sofya
  id: 09501ff6-dca7-11ea-a8ae-b3e0b9166e80
  last_name: Agafonova
  orcid: 0000-0003-0582-2946
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Artem
  full_name: Volosniev, Artem
  id: 37D278BC-F248-11E8-B48F-1D18A9856A87
  last_name: Volosniev
  orcid: 0000-0003-0393-5525
citation:
  ama: Agafonova S, Lemeshko M, Volosniev A. Finite-range bias in fitting three-body
    loss to the zero-range model. <i>Physical Review A</i>. 2023;107(6). doi:<a href="https://doi.org/10.1103/PhysRevA.107.L061304">10.1103/PhysRevA.107.L061304</a>
  apa: Agafonova, S., Lemeshko, M., &#38; Volosniev, A. (2023). Finite-range bias
    in fitting three-body loss to the zero-range model. <i>Physical Review A</i>.
    American Physical Society. <a href="https://doi.org/10.1103/PhysRevA.107.L061304">https://doi.org/10.1103/PhysRevA.107.L061304</a>
  chicago: Agafonova, Sofia, Mikhail Lemeshko, and Artem Volosniev. “Finite-Range
    Bias in Fitting Three-Body Loss to the Zero-Range Model.” <i>Physical Review A</i>.
    American Physical Society, 2023. <a href="https://doi.org/10.1103/PhysRevA.107.L061304">https://doi.org/10.1103/PhysRevA.107.L061304</a>.
  ieee: S. Agafonova, M. Lemeshko, and A. Volosniev, “Finite-range bias in fitting
    three-body loss to the zero-range model,” <i>Physical Review A</i>, vol. 107,
    no. 6. American Physical Society, 2023.
  ista: Agafonova S, Lemeshko M, Volosniev A. 2023. Finite-range bias in fitting three-body
    loss to the zero-range model. Physical Review A. 107(6), L061304.
  mla: Agafonova, Sofia, et al. “Finite-Range Bias in Fitting Three-Body Loss to the
    Zero-Range Model.” <i>Physical Review A</i>, vol. 107, no. 6, L061304, American
    Physical Society, 2023, doi:<a href="https://doi.org/10.1103/PhysRevA.107.L061304">10.1103/PhysRevA.107.L061304</a>.
  short: S. Agafonova, M. Lemeshko, A. Volosniev, Physical Review A 107 (2023).
corr_author: '1'
das_tickbox: '0'
date_created: 2023-07-16T22:01:10Z
date_published: 2023-06-20T00:00:00Z
date_updated: 2026-07-08T08:30:05Z
day: '20'
department:
- _id: MiLe
- _id: OnHo
doi: 10.1103/PhysRevA.107.L061304
ec_funded: 1
external_id:
  arxiv:
  - '2302.01022'
  isi:
  - '001019748000005'
intvolume: '       107'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2302.01022
month: '06'
oa: 1
oa_version: Preprint
project:
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
publication: Physical Review A
publication_identifier:
  eissn:
  - 2469-9934
  issn:
  - 2469-9926
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Finite-range bias in fitting three-body loss to the zero-range model
type: journal_article
user_id: 68b8ca59-c5b3-11ee-8790-cd641c68093d
volume: 107
year: '2023'
...
---
_id: '13264'
abstract:
- lang: eng
  text: "We build a parametric amplifier with a Josephson field-effect transistor
    (JoFET) as the active element. The resonant frequency of the device is field-effect
    tunable over a range of 2 GHz. The JoFET amplifier has 20 dB of gain, 4 MHz of
    instantaneous bandwidth, and a 1-dB compression point of -125.5 dBm when operated
    at a fixed resonance frequency.\r\n\r\n"
acknowledged_ssus:
- _id: NanoFab
- _id: M-Shop
acknowledgement: We thank Shyam Shankar for helpful feedback on the manuscript. We
  gratefully acknowledge the support of the ISTA nanofabrication facility, the Miba
  Machine Shop, and the eMachine Shop. The NYU team acknowledges support from Army
  Research Office Grant No. W911NF2110303.
article_number: '064032'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Duc T
  full_name: Phan, Duc T
  id: 29C8C0B4-F248-11E8-B48F-1D18A9856A87
  last_name: Phan
- first_name: Paul
  full_name: Falthansl-Scheinecker, Paul
  id: 85b43b21-15b2-11ec-abd3-e2c252cc2285
  last_name: Falthansl-Scheinecker
- first_name: Umang
  full_name: Mishra, Umang
  id: 4328fa4c-f128-11eb-9611-c107b0fe4d51
  last_name: Mishra
- first_name: W. M.
  full_name: Strickland, W. M.
  last_name: Strickland
- first_name: D.
  full_name: Langone, D.
  last_name: Langone
- first_name: J.
  full_name: Shabani, J.
  last_name: Shabani
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
citation:
  ama: Phan DT, Falthansl-Scheinecker P, Mishra U, et al. Gate-tunable superconductor-semiconductor
    parametric amplifier. <i>Physical Review Applied</i>. 2023;19(6). doi:<a href="https://doi.org/10.1103/PhysRevApplied.19.064032">10.1103/PhysRevApplied.19.064032</a>
  apa: Phan, D. T., Falthansl-Scheinecker, P., Mishra, U., Strickland, W. M., Langone,
    D., Shabani, J., &#38; Higginbotham, A. P. (2023). Gate-tunable superconductor-semiconductor
    parametric amplifier. <i>Physical Review Applied</i>. American Physical Society.
    <a href="https://doi.org/10.1103/PhysRevApplied.19.064032">https://doi.org/10.1103/PhysRevApplied.19.064032</a>
  chicago: Phan, Duc T, Paul Falthansl-Scheinecker, Umang Mishra, W. M. Strickland,
    D. Langone, J. Shabani, and Andrew P Higginbotham. “Gate-Tunable Superconductor-Semiconductor
    Parametric Amplifier.” <i>Physical Review Applied</i>. American Physical Society,
    2023. <a href="https://doi.org/10.1103/PhysRevApplied.19.064032">https://doi.org/10.1103/PhysRevApplied.19.064032</a>.
  ieee: D. T. Phan <i>et al.</i>, “Gate-tunable superconductor-semiconductor parametric
    amplifier,” <i>Physical Review Applied</i>, vol. 19, no. 6. American Physical
    Society, 2023.
  ista: Phan DT, Falthansl-Scheinecker P, Mishra U, Strickland WM, Langone D, Shabani
    J, Higginbotham AP. 2023. Gate-tunable superconductor-semiconductor parametric
    amplifier. Physical Review Applied. 19(6), 064032.
  mla: Phan, Duc T., et al. “Gate-Tunable Superconductor-Semiconductor Parametric
    Amplifier.” <i>Physical Review Applied</i>, vol. 19, no. 6, 064032, American Physical
    Society, 2023, doi:<a href="https://doi.org/10.1103/PhysRevApplied.19.064032">10.1103/PhysRevApplied.19.064032</a>.
  short: D.T. Phan, P. Falthansl-Scheinecker, U. Mishra, W.M. Strickland, D. Langone,
    J. Shabani, A.P. Higginbotham, Physical Review Applied 19 (2023).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: The raw data and the plotting code are available in the
  Supplemental Material at http://link.aps.org/supplemental/10.1103/PhysRevApplied.19.064032.
  Further data are available upon reasonable request.
date_created: 2023-07-23T22:01:12Z
date_published: 2023-06-09T00:00:00Z
date_updated: 2026-07-08T08:38:44Z
day: '09'
department:
- _id: AnHi
- _id: OnHo
doi: 10.1103/PhysRevApplied.19.064032
external_id:
  arxiv:
  - '2206.05746'
  isi:
  - '001012022600004'
intvolume: '        19'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2206.05746
month: '06'
oa: 1
oa_version: Preprint
publication: Physical Review Applied
publication_identifier:
  eissn:
  - 2331-7019
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  record:
  - id: '14547'
    relation: dissertation_contains
    status: public
researchdata_availability: yes (supplementary data)
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Gate-tunable superconductor-semiconductor parametric amplifier
type: journal_article
user_id: 68b8ca59-c5b3-11ee-8790-cd641c68093d
volume: 19
year: '2023'
...
---
OA_place: repository
OA_type: green
_id: '22162'
abstract:
- lang: eng
  text: "Given a bipartite graph G, the graphical matrix space SG consists of\r\nmatrices
    whose non-zero entries can only be at those positions corresponding to edges in
    G. Tutte (J. London Math. Soc., 1947), Edmonds\r\n(J. Res. Nat. Bur. Standards
    Sect. B, 1967) and Lov´asz (FCT, 1979) observed connections between perfect matchings
    in G and full-rank matrices\r\nin SG. Dieudonn´e (Arch. Math., 1948) proved a
    tight upper bound on\r\nthe dimensions of those matrix spaces containing only
    singular matrices.\r\nThe starting point of this paper is a simultaneous generalization
    of these\r\ntwo classical results: we show that the largest dimension over subspaces\r\nof
    SG containing only singular matrices is equal to the maximum size over\r\nsubgraphs
    of G without perfect matchings, based on Meshulam’s proof of\r\nDieudonn´e’s result
    (Quart. J. Math., 1985).\r\nStarting from this result, we go on to establish more
    connections\r\nbetween properties of graphs and matrix spaces. For example, we\r\nestablish
    connections between acyclicity and nilpotency, between strong\r\nconnectivity
    and irreducibility, and between isomorphism and\r\nconjugacy/congruence. For each
    connection, we study three types of correspondences, namely the basic correspondence,
    the inherited correspondence (for subgraphs and subspaces), and the induced correspondence\r\n(for
    induced subgraphs and restrictions). Some correspondences lead to\r\nintriguing
    generalizations of classical results, such as Dieudonn´e’s result\r\nmentioned
    above, and a celebrated theorem of Gerstenhaber regarding the\r\nlargest dimension
    of nil matrix spaces (Amer. J. Math., 1958).\r\nFinally, we show some implications
    of our results to quantum information and present open problems in computational
    complexity motivated\r\nby these results."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Yinan
  full_name: Li, Yinan
  last_name: Li
- first_name: Youming
  full_name: Qiao, Youming
  last_name: Qiao
- first_name: Avi
  full_name: Wigderson, Avi
  last_name: Wigderson
- first_name: Yuval
  full_name: Wigderson, Yuval
  id: 2d0023a0-1567-11f0-833d-d5c1e476d4b5
  last_name: Wigderson
- first_name: Chuanqi
  full_name: Zhang, Chuanqi
  last_name: Zhang
citation:
  ama: Li Y, Qiao Y, Wigderson A, Wigderson Y, Zhang C. Connections between graphs
    and matrix spaces. <i>Israel Journal of Mathematics</i>. 2023;256(2):513-580.
    doi:<a href="https://doi.org/10.1007/s11856-023-2515-7">10.1007/s11856-023-2515-7</a>
  apa: Li, Y., Qiao, Y., Wigderson, A., Wigderson, Y., &#38; Zhang, C. (2023). Connections
    between graphs and matrix spaces. <i>Israel Journal of Mathematics</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s11856-023-2515-7">https://doi.org/10.1007/s11856-023-2515-7</a>
  chicago: Li, Yinan, Youming Qiao, Avi Wigderson, Yuval Wigderson, and Chuanqi Zhang.
    “Connections between Graphs and Matrix Spaces.” <i>Israel Journal of Mathematics</i>.
    Springer Nature, 2023. <a href="https://doi.org/10.1007/s11856-023-2515-7">https://doi.org/10.1007/s11856-023-2515-7</a>.
  ieee: Y. Li, Y. Qiao, A. Wigderson, Y. Wigderson, and C. Zhang, “Connections between
    graphs and matrix spaces,” <i>Israel Journal of Mathematics</i>, vol. 256, no.
    2. Springer Nature, pp. 513–580, 2023.
  ista: Li Y, Qiao Y, Wigderson A, Wigderson Y, Zhang C. 2023. Connections between
    graphs and matrix spaces. Israel Journal of Mathematics. 256(2), 513–580.
  mla: Li, Yinan, et al. “Connections between Graphs and Matrix Spaces.” <i>Israel
    Journal of Mathematics</i>, vol. 256, no. 2, Springer Nature, 2023, pp. 513–80,
    doi:<a href="https://doi.org/10.1007/s11856-023-2515-7">10.1007/s11856-023-2515-7</a>.
  short: Y. Li, Y. Qiao, A. Wigderson, Y. Wigderson, C. Zhang, Israel Journal of Mathematics
    256 (2023) 513–580.
date_created: 2026-06-29T10:52:37Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2026-07-08T10:44:50Z
day: '01'
doi: 10.1007/s11856-023-2515-7
extern: '1'
external_id:
  arxiv:
  - '2206.04815'
intvolume: '       256'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2206.04815
month: '09'
oa: 1
oa_version: Preprint
page: 513-580
publication: Israel Journal of Mathematics
publication_identifier:
  eissn:
  - 1565-8511
  issn:
  - 0021-2172
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Connections between graphs and matrix spaces
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 256
year: '2023'
...
---
OA_place: repository
OA_type: green
_id: '22159'
abstract:
- lang: eng
  text: 'The size Ramsey number of a graph H is defined as the minimum number of edges
    in a graph G such that there is a monochromatic copy of H in every two-coloring
    of E(G). The size Ramsey number was introduced by Erdős, Faudree, Rousseau, and
    Schelp in 1978 and they ended their foundational paper by asking whether one can
    determine up to a constant factor the size Ramsey numbers of three families of
    graphs: complete bipartite graphs, book graphs (obtained by adding many common
    neighbors to the vertices of a clique), and starburst graphs (obtained by adding
    many pendant edges to each vertex of a clique). In this paper, we completely resolve
    the latter two questions and make substantial progress on the first by determining
    the size Ramsey number of Ks,t up to a constant factor for all t=Ω(s log s).'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: David
  full_name: Conlon, David
  last_name: Conlon
- first_name: Jacob
  full_name: Fox, Jacob
  last_name: Fox
- first_name: Yuval
  full_name: Wigderson, Yuval
  id: 2d0023a0-1567-11f0-833d-d5c1e476d4b5
  last_name: Wigderson
citation:
  ama: Conlon D, Fox J, Wigderson Y. Three early problems on size Ramsey numbers.
    <i>Combinatorica</i>. 2023;43(4):743-768. doi:<a href="https://doi.org/10.1007/s00493-023-00034-7">10.1007/s00493-023-00034-7</a>
  apa: Conlon, D., Fox, J., &#38; Wigderson, Y. (2023). Three early problems on size
    Ramsey numbers. <i>Combinatorica</i>. Springer Nature. <a href="https://doi.org/10.1007/s00493-023-00034-7">https://doi.org/10.1007/s00493-023-00034-7</a>
  chicago: Conlon, David, Jacob Fox, and Yuval Wigderson. “Three Early Problems on
    Size Ramsey Numbers.” <i>Combinatorica</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00493-023-00034-7">https://doi.org/10.1007/s00493-023-00034-7</a>.
  ieee: D. Conlon, J. Fox, and Y. Wigderson, “Three early problems on size Ramsey
    numbers,” <i>Combinatorica</i>, vol. 43, no. 4. Springer Nature, pp. 743–768,
    2023.
  ista: Conlon D, Fox J, Wigderson Y. 2023. Three early problems on size Ramsey numbers.
    Combinatorica. 43(4), 743–768.
  mla: Conlon, David, et al. “Three Early Problems on Size Ramsey Numbers.” <i>Combinatorica</i>,
    vol. 43, no. 4, Springer Nature, 2023, pp. 743–68, doi:<a href="https://doi.org/10.1007/s00493-023-00034-7">10.1007/s00493-023-00034-7</a>.
  short: D. Conlon, J. Fox, Y. Wigderson, Combinatorica 43 (2023) 743–768.
date_created: 2026-06-29T10:51:32Z
date_published: 2023-08-01T00:00:00Z
date_updated: 2026-07-08T10:34:40Z
day: '01'
doi: 10.1007/s00493-023-00034-7
extern: '1'
external_id:
  arxiv:
  - '2111.05420'
intvolume: '        43'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2111.05420
month: '08'
oa: 1
oa_version: Preprint
page: 743-768
publication: Combinatorica
publication_identifier:
  eissn:
  - 1439-6912
  issn:
  - 0209-9683
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Three early problems on size Ramsey numbers
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 43
year: '2023'
...
---
OA_place: publisher
_id: '14641'
abstract:
- lang: eng
  text: "Mutation rates represent the net result of complex interactions among various\r\ncellular
    processes and can dramatically influence the evolutionary fate of\r\nmicrobial
    populations. However, many popular techniques used to study\r\nmutations are subject
    to the confounding effects of heredity and the subtleties\r\nof adaptation to
    selection, all of which make it difficult to observe any dynamic\r\nresponses
    of mutation rates to fitness challenges. Furthermore, in spite of the\r\nubiquity
    of quorum sensing systems across the bacterial domain and relevance\r\nfor many
    physiological behaviors, the effects of such mechanisms on mutation\r\nrate and
    adaptation remain poorly understood. In the following work, I\r\npresent the development
    of a microfluidic droplet-based method to measure\r\nsingle base-pair mutation
    rates in growing populations of the bacterium\r\nEscherichia coli. I use this
    method to observe a stress-induced increase in\r\nmutation rate that is mediated
    by luxS, a highly conserved bacterial quorum\r\nsensing component. I also show
    that the aforementioned increase in mutation\r\nrate, and its associated control
    by luxS, corresponds to a higher degree of\r\nadaptability under competitive environments."
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
- _id: CampIT
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Mike
  full_name: Hennessey-Wesen, Mike
  id: 3F338C72-F248-11E8-B48F-1D18A9856A87
  last_name: Hennessey-Wesen
citation:
  ama: Hennessey-Wesen M. Adaptive mutation in E. coli modulated by luxS. 2023. doi:<a
    href="https://doi.org/10.15479/at:ista:14641">10.15479/at:ista:14641</a>
  apa: Hennessey-Wesen, M. (2023). <i>Adaptive mutation in E. coli modulated by luxS</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:14641">https://doi.org/10.15479/at:ista:14641</a>
  chicago: Hennessey-Wesen, Mike. “Adaptive Mutation in E. Coli Modulated by LuxS.”
    Institute of Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/at:ista:14641">https://doi.org/10.15479/at:ista:14641</a>.
  ieee: M. Hennessey-Wesen, “Adaptive mutation in E. coli modulated by luxS,” Institute
    of Science and Technology Austria, 2023.
  ista: Hennessey-Wesen M. 2023. Adaptive mutation in E. coli modulated by luxS. Institute
    of Science and Technology Austria.
  mla: Hennessey-Wesen, Mike. <i>Adaptive Mutation in E. Coli Modulated by LuxS</i>.
    Institute of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/at:ista:14641">10.15479/at:ista:14641</a>.
  short: M. Hennessey-Wesen, Adaptive Mutation in E. Coli Modulated by LuxS, Institute
    of Science and Technology Austria, 2023.
corr_author: '1'
das_tickbox: '1'
date_created: 2023-12-04T13:17:37Z
date_published: 2023-11-30T00:00:00Z
date_updated: 2026-07-13T10:55:56Z
day: '30'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: GradSch
- _id: BjHo
doi: 10.15479/at:ista:14641
doi_confirm: '1'
ec_funded: 1
file:
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  date_created: 2023-12-06T13:13:26Z
  date_updated: 2024-11-30T23:30:05Z
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  file_name: mike_thesis_v06-12-2023.odt
  file_size: 46405919
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  creator: mhenness
  date_created: 2023-12-06T13:14:15Z
  date_updated: 2026-07-13T10:55:56Z
  embargo: 2026-11-18
  embargo_to: open_access
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  file_name: mike_thesis_v06-12-2023.pdf
  file_size: 21282155
  relation: main_file
- access_level: closed
  checksum: 902102d26d30e74dbd6cdd70a65820c3
  content_type: application/pdf
  creator: cchlebak
  date_created: 2025-05-20T12:59:12Z
  date_updated: 2025-05-20T22:31:34Z
  description: for printing purposes only
  embargo_to: open_access
  file_id: '19720'
  file_name: 2023_Hennessey_Michael_Thesis_print.pdf
  file_size: 45847968
  relation: other
  title: Print version
file_date_updated: 2026-07-13T10:55:56Z
has_accepted_license: '1'
keyword:
- microfluidics
- miceobiology
- mutations
- quorum sensing
language:
- iso: eng
month: '11'
oa_version: Published Version
page: '104'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
title: Adaptive mutation in E. coli modulated by luxS
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2023'
...
---
OA_place: publisher
OA_type: hybrid
_id: '14666'
abstract:
- lang: eng
  text: So-called spontaneous activity is a central hallmark of most nervous systems.
    Such non-causal firing is contrary to the tenet of spikes as a means of communication,
    and its purpose remains unclear. We propose that self-initiated firing can serve
    as a release valve to protect neurons from the toxic conditions arising in mitochondria
    from lower-than-baseline energy consumption. To demonstrate the viability of our
    hypothesis, we built a set of models that incorporate recent experimental results
    indicating homeostatic control of metabolic products—Adenosine triphosphate (ATP),
    adenosine diphosphate (ADP), and reactive oxygen species (ROS)—by changes in firing.
    We explore the relationship of metabolic cost of spiking with its effect on the
    temporal patterning of spikes and reproduce experimentally observed changes in
    intrinsic firing in the fruitfly dorsal fan-shaped body neuron in a model with
    ROS-modulated potassium channels. We also show that metabolic spiking homeostasis
    can produce indefinitely sustained avalanche dynamics in cortical circuits. Our
    theory can account for key features of neuronal activity observed in many studies
    ranging from ion channel function all the way to resting state dynamics. We finish
    with a set of experimental predictions that would confirm an integrated, crucial
    role for metabolically regulated spiking and firmly link metabolic homeostasis
    and neuronal function.
acknowledgement: We thank Prof. C. Nazaret and Prof. J.-P. Mazat for sharing the code
  of their mitochondrial model. We also thank G. Miesenböck, E. Marder, L. Abbott,
  A. Kempf, P. Hasenhuetl, W. Podlaski, F. Zenke, E. Agnes, P. Bozelos, J. Watson,
  B. Confavreux, and G. Christodoulou, and the rest of the Vogels Lab for their feedback.
  This work was funded by Wellcome Trust and Royal Society Sir Henry Dale Research
  Fellowship (WT100000), a Wellcome Trust Senior Research Fellowship (214316/Z/18/Z),
  and a UK Research and Innovation, Biotechnology and Biological Sciences Research
  Council grant (UKRI-BBSRC BB/N019512/1).
article_number: e2306525120
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Chaitanya
  full_name: Chintaluri, Chaitanya
  id: BA06AFEE-A4BA-11EA-AE5C-14673DDC885E
  last_name: Chintaluri
  orcid: 0000-0003-4252-1608
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
citation:
  ama: Chintaluri C, Vogels TP. Metabolically regulated spiking could serve neuronal
    energy homeostasis and protect from reactive oxygen species. <i>Proceedings of
    the National Academy of Sciences of the United States of America</i>. 2023;120(48).
    doi:<a href="https://doi.org/10.1073/pnas.2306525120">10.1073/pnas.2306525120</a>
  apa: Chintaluri, C., &#38; Vogels, T. P. (2023). Metabolically regulated spiking
    could serve neuronal energy homeostasis and protect from reactive oxygen species.
    <i>Proceedings of the National Academy of Sciences of the United States of America</i>.
    National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.2306525120">https://doi.org/10.1073/pnas.2306525120</a>
  chicago: Chintaluri, Chaitanya, and Tim P Vogels. “Metabolically Regulated Spiking
    Could Serve Neuronal Energy Homeostasis and Protect from Reactive Oxygen Species.”
    <i>Proceedings of the National Academy of Sciences of the United States of America</i>.
    National Academy of Sciences, 2023. <a href="https://doi.org/10.1073/pnas.2306525120">https://doi.org/10.1073/pnas.2306525120</a>.
  ieee: C. Chintaluri and T. P. Vogels, “Metabolically regulated spiking could serve
    neuronal energy homeostasis and protect from reactive oxygen species,” <i>Proceedings
    of the National Academy of Sciences of the United States of America</i>, vol.
    120, no. 48. National Academy of Sciences, 2023.
  ista: Chintaluri C, Vogels TP. 2023. Metabolically regulated spiking could serve
    neuronal energy homeostasis and protect from reactive oxygen species. Proceedings
    of the National Academy of Sciences of the United States of America. 120(48),
    e2306525120.
  mla: Chintaluri, Chaitanya, and Tim P. Vogels. “Metabolically Regulated Spiking
    Could Serve Neuronal Energy Homeostasis and Protect from Reactive Oxygen Species.”
    <i>Proceedings of the National Academy of Sciences of the United States of America</i>,
    vol. 120, no. 48, e2306525120, National Academy of Sciences, 2023, doi:<a href="https://doi.org/10.1073/pnas.2306525120">10.1073/pnas.2306525120</a>.
  short: C. Chintaluri, T.P. Vogels, Proceedings of the National Academy of Sciences
    of the United States of America 120 (2023).
corr_author: '1'
das_tickbox: '1'
date_created: 2023-12-10T23:01:00Z
date_published: 2023-11-21T00:00:00Z
date_updated: 2026-07-13T12:30:49Z
day: '21'
ddc:
- '570'
department:
- _id: TiVo
doi: 10.1073/pnas.2306525120
external_id:
  isi:
  - '001157389000005'
  pmid:
  - '37988463'
file:
- access_level: open_access
  checksum: bf4ec38602a70dae4338077a5a4d497f
  content_type: application/pdf
  creator: dernst
  date_created: 2023-12-11T12:45:12Z
  date_updated: 2023-12-11T12:45:12Z
  file_id: '14678'
  file_name: 2023_PNAS_Chintaluri.pdf
  file_size: 16891602
  relation: main_file
  success: 1
file_date_updated: 2023-12-11T12:45:12Z
has_accepted_license: '1'
intvolume: '       120'
isi: 1
issue: '48'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: c084a126-5a5b-11eb-8a69-d75314a70a87
  grant_number: 214316/Z/18/Z
  name: What’s in a memory? Spatiotemporal dynamics in strongly coupled recurrent
    neuronal networks.
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/ccluri/metabolic_spiking
scopus_import: '1'
status: public
title: Metabolically regulated spiking could serve neuronal energy homeostasis and
  protect from reactive oxygen species
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 120
year: '2023'
...
---
OA_place: repository
OA_type: green
_id: '22164'
abstract:
- lang: eng
  text: 'The clique removal lemma says that for every ≥r 3 andε > 0, there exists
    some δ > 0 so that every n‐vertex graph G with fewer than δnr copies of K r can
    be made K r ‐free by removing at most εn2 edges. The dependence of δ on ε in this
    result is notoriously difficult to determine: it is known that δ−1 must be at
    least super‐polynomial in ε−1, and that it is at most of tower type in εlog −1.
    We prove that if one imposes an appropriate minimum degree condition on G, then
    one can actually take δ to be a linear function of ε in the clique removal lemma.
    Moreover, we determine the threshold for such a minimum degree requirement, showing
    that above this threshold we have linear bounds, whereas below the threshold the
    bounds are once again super‐polynomial, as in the unrestricted removal lemma.
    We also investigate this question for other graphs besides cliques, and prove
    some general results about how minimum degree conditions affect the bounds in
    the graph removal lemma.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jacob
  full_name: Fox, Jacob
  last_name: Fox
- first_name: Yuval
  full_name: Wigderson, Yuval
  id: 2d0023a0-1567-11f0-833d-d5c1e476d4b5
  last_name: Wigderson
citation:
  ama: Fox J, Wigderson Y. Minimum degree and the graph removal lemma. <i>Journal
    of Graph Theory</i>. 2023;102(4):648-665. doi:<a href="https://doi.org/10.1002/jgt.22891">10.1002/jgt.22891</a>
  apa: Fox, J., &#38; Wigderson, Y. (2023). Minimum degree and the graph removal lemma.
    <i>Journal of Graph Theory</i>. Wiley. <a href="https://doi.org/10.1002/jgt.22891">https://doi.org/10.1002/jgt.22891</a>
  chicago: Fox, Jacob, and Yuval Wigderson. “Minimum Degree and the Graph Removal
    Lemma.” <i>Journal of Graph Theory</i>. Wiley, 2023. <a href="https://doi.org/10.1002/jgt.22891">https://doi.org/10.1002/jgt.22891</a>.
  ieee: J. Fox and Y. Wigderson, “Minimum degree and the graph removal lemma,” <i>Journal
    of Graph Theory</i>, vol. 102, no. 4. Wiley, pp. 648–665, 2023.
  ista: Fox J, Wigderson Y. 2023. Minimum degree and the graph removal lemma. Journal
    of Graph Theory. 102(4), 648–665.
  mla: Fox, Jacob, and Yuval Wigderson. “Minimum Degree and the Graph Removal Lemma.”
    <i>Journal of Graph Theory</i>, vol. 102, no. 4, Wiley, 2023, pp. 648–65, doi:<a
    href="https://doi.org/10.1002/jgt.22891">10.1002/jgt.22891</a>.
  short: J. Fox, Y. Wigderson, Journal of Graph Theory 102 (2023) 648–665.
date_created: 2026-06-29T10:53:26Z
date_published: 2023-04-01T00:00:00Z
date_updated: 2026-07-14T08:24:20Z
day: '01'
doi: 10.1002/jgt.22891
extern: '1'
external_id:
  arxiv:
  - '2105.09194'
intvolume: '       102'
issue: '4'
keyword:
- chromatic threshold
- graph removal lemma
- homomorphism threshold
- minimum degree conditions
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2105.09194
month: '04'
oa: 1
oa_version: Preprint
page: 648-665
publication: Journal of Graph Theory
publication_identifier:
  eissn:
  - 1097-0118
  issn:
  - 0364-9024
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Minimum degree and the graph removal lemma
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 102
year: '2023'
...
---
OA_place: repository
OA_type: green
_id: '22165'
abstract:
- lang: eng
  text: "The book graph \U0001D435(\U0001D458)\r\n\U0001D45B consists of \U0001D45B
    copies of \U0001D43E\U0001D458+1 joined along a common \U0001D43E\U0001D458. In
    the prequel to this paper, we studied the diagonal Ramsey number \U0001D45F⁡(\U0001D435(\U0001D458)\r\n\U0001D45B,\U0001D435(\U0001D458)\r\n\U0001D45B).
    Here we consider the natural off-diagonal variant \U0001D45F⁡(\U0001D435(\U0001D458)\r\n\U0001D450⁢\U0001D45B,\U0001D435(\U0001D458)\r\n\U0001D45B)
    for fixed \U0001D450 ∈(0,1]. In this more general setting, we show that an interesting
    dichotomy emerges: for very small \U0001D450, a simple \U0001D458-partite construction
    dictates the Ramsey function and all nearly-extremal colourings are close to being
    \U0001D458-partite, while, for \U0001D450 bounded away from 0, random colourings
    of an appropriate density are asymptotically optimal and all nearly-extremal colourings
    are quasirandom. Our investigations also open up a range of questions about what
    happens for intermediate values of \U0001D450.\r\n\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: David
  full_name: Conlon, David
  last_name: Conlon
- first_name: Jacob
  full_name: Fox, Jacob
  last_name: Fox
- first_name: Yuval
  full_name: Wigderson, Yuval
  id: 2d0023a0-1567-11f0-833d-d5c1e476d4b5
  last_name: Wigderson
citation:
  ama: Conlon D, Fox J, Wigderson Y. Off-diagonal book Ramsey numbers. <i>Combinatorics,
    Probability and Computing</i>. 2023;32(3):516-545. doi:<a href="https://doi.org/10.1017/s0963548322000360">10.1017/s0963548322000360</a>
  apa: Conlon, D., Fox, J., &#38; Wigderson, Y. (2023). Off-diagonal book Ramsey numbers.
    <i>Combinatorics, Probability and Computing</i>. Cambridge University Press. <a
    href="https://doi.org/10.1017/s0963548322000360">https://doi.org/10.1017/s0963548322000360</a>
  chicago: Conlon, David, Jacob Fox, and Yuval Wigderson. “Off-Diagonal Book Ramsey
    Numbers.” <i>Combinatorics, Probability and Computing</i>. Cambridge University
    Press, 2023. <a href="https://doi.org/10.1017/s0963548322000360">https://doi.org/10.1017/s0963548322000360</a>.
  ieee: D. Conlon, J. Fox, and Y. Wigderson, “Off-diagonal book Ramsey numbers,” <i>Combinatorics,
    Probability and Computing</i>, vol. 32, no. 3. Cambridge University Press, pp.
    516–545, 2023.
  ista: Conlon D, Fox J, Wigderson Y. 2023. Off-diagonal book Ramsey numbers. Combinatorics,
    Probability and Computing. 32(3), 516–545.
  mla: Conlon, David, et al. “Off-Diagonal Book Ramsey Numbers.” <i>Combinatorics,
    Probability and Computing</i>, vol. 32, no. 3, Cambridge University Press, 2023,
    pp. 516–45, doi:<a href="https://doi.org/10.1017/s0963548322000360">10.1017/s0963548322000360</a>.
  short: D. Conlon, J. Fox, Y. Wigderson, Combinatorics, Probability and Computing
    32 (2023) 516–545.
date_created: 2026-06-29T10:53:47Z
date_published: 2023-05-01T00:00:00Z
date_updated: 2026-07-14T08:27:40Z
day: '01'
doi: 10.1017/s0963548322000360
extern: '1'
external_id:
  arxiv:
  - '2110.14483'
intvolume: '        32'
issue: '3'
keyword:
- Ramsey theory
- book graphs
- Ramsey goodness
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2110.14483
mathsc:
- 05C55
- 05D10
month: '05'
oa: 1
oa_version: Preprint
page: 516-545
publication: Combinatorics, Probability and Computing
publication_identifier:
  eissn:
  - 1469-2163
  issn:
  - 0963-5483
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Off-diagonal book Ramsey numbers
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2023'
...
---
OA_place: repository
OA_type: green
_id: '22170'
abstract:
- lang: eng
  text: "Extending an earlier conjecture of Erdős, Burr and Rosta conjectured that
    among all two-colorings of the edges of a complete graph, the uniformly random
    coloring asymptotically minimizes the number of monochromatic copies of any fixed
    graph H. This conjecture was disproved independently by Sidorenko and Thomason.
    The first author later found quantitatively stronger counterexamples, using the
    Turán coloring, in which one of the two colors spans a balanced complete multipartite
    graph.\r\nWe prove that the Turán coloring is extremal for an infinite family
    of graphs, and that it is the unique extremal coloring. This yields the first
    determination of the Ramsey multiplicity constant of a graph for which the Burr--Rosta
    conjecture fails.\r\nWe also prove an analogous three-color result. In this case,
    our result is conditional on a certain natural conjecture on the behavior of two-color
    Ramsey numbers."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jacob
  full_name: Fox, Jacob
  last_name: Fox
- first_name: Yuval
  full_name: Wigderson, Yuval
  id: 2d0023a0-1567-11f0-833d-d5c1e476d4b5
  last_name: Wigderson
citation:
  ama: Fox J, Wigderson Y. Ramsey multiplicity and the Turán coloring. <i>Advances
    in Combinatorics</i>. 2023. doi:<a href="https://doi.org/10.19086/aic.2023.2">10.19086/aic.2023.2</a>
  apa: Fox, J., &#38; Wigderson, Y. (2023). Ramsey multiplicity and the Turán coloring.
    <i>Advances in Combinatorics</i>. Alliance of Diamond Open Access Journals. <a
    href="https://doi.org/10.19086/aic.2023.2">https://doi.org/10.19086/aic.2023.2</a>
  chicago: Fox, Jacob, and Yuval Wigderson. “Ramsey Multiplicity and the Turán Coloring.”
    <i>Advances in Combinatorics</i>. Alliance of Diamond Open Access Journals, 2023.
    <a href="https://doi.org/10.19086/aic.2023.2">https://doi.org/10.19086/aic.2023.2</a>.
  ieee: J. Fox and Y. Wigderson, “Ramsey multiplicity and the Turán coloring,” <i>Advances
    in Combinatorics</i>. Alliance of Diamond Open Access Journals, 2023.
  ista: Fox J, Wigderson Y. 2023. Ramsey multiplicity and the Turán coloring. Advances
    in Combinatorics.
  mla: Fox, Jacob, and Yuval Wigderson. “Ramsey Multiplicity and the Turán Coloring.”
    <i>Advances in Combinatorics</i>, Alliance of Diamond Open Access Journals, 2023,
    doi:<a href="https://doi.org/10.19086/aic.2023.2">10.19086/aic.2023.2</a>.
  short: J. Fox, Y. Wigderson, Advances in Combinatorics (2023).
date_created: 2026-06-29T10:55:46Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2026-07-14T08:45:53Z
day: '01'
doi: 10.19086/aic.2023.2
extern: '1'
external_id:
  arxiv:
  - '2207.07775'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2207.07775
month: '01'
oa: 1
oa_version: Preprint
publication: Advances in Combinatorics
publication_identifier:
  eissn:
  - 2517-5599
publication_status: published
publisher: Alliance of Diamond Open Access Journals
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ramsey multiplicity and the Turán coloring
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
OA_place: repository
OA_type: green
_id: '22176'
abstract:
- lang: eng
  text: "The Ramsey number r(G,H) is the minimum N such that every graph on N vertices
    contains G as a subgraph or its complement contains H as a subgraph. For integers
    n≥k≥1, the k-book Bk,n is the graph on n vertices consisting of a copy of Kk,
    called the spine, as well as n−k additional vertices each adjacent to every vertex
    of the spine and non-adjacent to each other. A connected graph H on n vertices
    is called p-good if r(Kp,H)=(p−1)(n−1)+1. Nikiforov and Rousseau proved that if
    n is sufficiently large in terms of p and k, then Bk,n is p-good. Their proof
    uses Szemerédi's regularity lemma and gives a tower-type bound on n. We give a
    short new proof that avoids using the regularity method and shows that every Bk,n
    with n≥2k10p is p-good.\r\nUsing Szemerédi's regularity lemma, Nikiforov and Rousseau
    also proved much more general goodness-type results, proving a tight bound on
    r(G,H) for several families of sparse graphs G and H as long as |V(G)|<δ|V(H)|
    for a small constant δ>0. Using our techniques, we prove a new result of this
    type, showing that r(G,H)=(p−1)(n−1)+1 when H=Bk,n and G is a complete p-partite
    graph whose first p−1 parts have constant size and whose last part has size δn,
    for some small constant δ>0. Again, our proof does not use the regularity method,
    and thus yields double-exponential bounds on δ.\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jacob
  full_name: Fox, Jacob
  last_name: Fox
- first_name: Xiaoyu
  full_name: He, Xiaoyu
  last_name: He
- first_name: Yuval
  full_name: Wigderson, Yuval
  id: 2d0023a0-1567-11f0-833d-d5c1e476d4b5
  last_name: Wigderson
citation:
  ama: Fox J, He X, Wigderson Y. Ramsey goodness of books revisited. <i>Advances in
    Combinatorics</i>. 2023. doi:<a href="https://doi.org/10.19086/aic.2023.4">10.19086/aic.2023.4</a>
  apa: Fox, J., He, X., &#38; Wigderson, Y. (2023). Ramsey goodness of books revisited.
    <i>Advances in Combinatorics</i>. Alliance of Diamond Open Access Journals. <a
    href="https://doi.org/10.19086/aic.2023.4">https://doi.org/10.19086/aic.2023.4</a>
  chicago: Fox, Jacob, Xiaoyu He, and Yuval Wigderson. “Ramsey Goodness of Books Revisited.”
    <i>Advances in Combinatorics</i>. Alliance of Diamond Open Access Journals, 2023.
    <a href="https://doi.org/10.19086/aic.2023.4">https://doi.org/10.19086/aic.2023.4</a>.
  ieee: J. Fox, X. He, and Y. Wigderson, “Ramsey goodness of books revisited,” <i>Advances
    in Combinatorics</i>. Alliance of Diamond Open Access Journals, 2023.
  ista: Fox J, He X, Wigderson Y. 2023. Ramsey goodness of books revisited. Advances
    in Combinatorics.
  mla: Fox, Jacob, et al. “Ramsey Goodness of Books Revisited.” <i>Advances in Combinatorics</i>,
    Alliance of Diamond Open Access Journals, 2023, doi:<a href="https://doi.org/10.19086/aic.2023.4">10.19086/aic.2023.4</a>.
  short: J. Fox, X. He, Y. Wigderson, Advances in Combinatorics (2023).
date_created: 2026-06-29T10:58:11Z
date_published: 2023-07-29T00:00:00Z
date_updated: 2026-07-14T09:05:44Z
day: '29'
doi: 10.19086/aic.2023.4
extern: '1'
external_id:
  arxiv:
  - '2109.09205'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2109.09205
month: '07'
oa: 1
oa_version: Preprint
publication: Advances in Combinatorics
publication_identifier:
  eissn:
  - 2517-5599
publication_status: published
publisher: Alliance of Diamond Open Access Journals
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ramsey goodness of books revisited
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
OA_place: repository
OA_type: green
_id: '22192'
abstract:
- lang: eng
  text: "In 1976, Gallagher showed that the Hardy–Littlewood conjectures on prime
    k-tuples imply that the\r\ndistribution of primes in log-size intervals is Poissonian.
    He did so by computing average values\r\nof the singular series constants over
    different sets of a fixed size k contained in an interval [1,h]\r\nas h → ∞, and
    then using this average to compute moments of the distribution of primes. In this\r\npaper,
    we study averages where k is relatively large with respect to h. We then apply
    these averages\r\nto the tail of the distribution. For example, we show, assuming
    appropriate Hardy–Littlewood\r\nconjectures and in certain ranges of the parameters,
    the number of intervals [n,n + λlogx] with\r\nn ≤ x containing at least k primes
    is ≪ x exp(−k/(λe))."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Vivian Zieve
  full_name: Kuperberg, Vivian Zieve
  id: c3bac823-112d-11f0-a3f5-c264f852e697
  last_name: Kuperberg
citation:
  ama: Kuperberg VZ. Sums of singular series with large sets and the tail of the distribution
    of primes. <i>The Quarterly Journal of Mathematics</i>. 2023;74(4):1457-1479.
    doi:<a href="https://doi.org/10.1093/qmath/haad030">10.1093/qmath/haad030</a>
  apa: Kuperberg, V. Z. (2023). Sums of singular series with large sets and the tail
    of the distribution of primes. <i>The Quarterly Journal of Mathematics</i>. Oxford
    University Press. <a href="https://doi.org/10.1093/qmath/haad030">https://doi.org/10.1093/qmath/haad030</a>
  chicago: Kuperberg, Vivian Zieve. “Sums of Singular Series with Large Sets and the
    Tail of the Distribution of Primes.” <i>The Quarterly Journal of Mathematics</i>.
    Oxford University Press, 2023. <a href="https://doi.org/10.1093/qmath/haad030">https://doi.org/10.1093/qmath/haad030</a>.
  ieee: V. Z. Kuperberg, “Sums of singular series with large sets and the tail of the
    distribution of primes,” <i>The Quarterly Journal of Mathematics</i>, vol. 74,
    no. 4. Oxford University Press, pp. 1457–1479, 2023.
  ista: Kuperberg VZ. 2023. Sums of singular series with large sets and the tail of the
    distribution of primes. The Quarterly Journal of Mathematics. 74(4), 1457–1479.
  mla: Kuperberg, Vivian Zieve. “Sums of Singular Series with Large Sets and the Tail
    of the Distribution of Primes.” <i>The Quarterly Journal of Mathematics</i>, vol.
    74, no. 4, Oxford University Press, 2023, pp. 1457–79, doi:<a href="https://doi.org/10.1093/qmath/haad030">10.1093/qmath/haad030</a>.
  short: V.Z. Kuperberg, The Quarterly Journal of Mathematics 74 (2023) 1457–1479.
date_created: 2026-06-29T12:56:30Z
date_published: 2023-12-01T00:00:00Z
date_updated: 2026-07-14T10:55:52Z
day: '01'
doi: 10.1093/qmath/haad030
extern: '1'
external_id:
  arxiv:
  - '2210.09775'
intvolume: '        74'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2210.09775
month: '12'
oa: 1
oa_version: Preprint
page: 1457-1479
publication: The Quarterly Journal of Mathematics
publication_identifier:
  eissn:
  - 1464-3847
  issn:
  - 0033-5606
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sums of singular series with large sets and the tail of the distribution of primes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 74
year: '2023'
...
---
OA_place: repository
OA_type: green
_id: '22212'
abstract:
- lang: eng
  text: "Anisotropic colloidal particles exhibit complex dynamics which play a crucial
    role in their functionality,\r\ntransport, and phase behavior. In this Letter,
    we investigate the two-dimensional diffusion of smoothly curved\r\ncolloidal rods—also
    known as colloidal bananas—as a function of their opening angle α. We measure
    the\r\ntranslational and rotational diffusion coefficients of the particles with
    opening angles ranging from 0◦ (straight\r\nrods) to nearly 360◦(closed rings).
    In particular, we find that the anisotropic diffusion of the particles varies\r\nnonmonotonically
    with their opening angle and that the axis of fastest diffusion switches from
    the long to the\r\nshort axis of the particles when α> 180◦. We also find that
    the rotational diffusion coefficient of nearly closed\r\nrings is approximately
    an order of magnitude higher than that of straight rods of the same length. Finally,
    we\r\nshow that the experimental results are consistent with slender body theory,
    indicating that the dynamical behavior\r\nof the particles arises primarily from
    their local drag anisotropy. These results highlight the impact of curvature\r\non
    the Brownian motion of elongated colloidal particles, which must be taken into
    account when seeking to\r\nunderstand the behavior of curved colloidal particles."
article_number: L042602
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Justin-Aurel
  full_name: Ulbrich, Justin-Aurel
  last_name: Ulbrich
- first_name: Carla
  full_name: Fernández-Rico, Carla
  id: 492def71-6250-11f0-b278-d41dbd241b62
  last_name: Fernández-Rico
- first_name: Brian
  full_name: Rost, Brian
  last_name: Rost
- first_name: Jacopo
  full_name: Vialetto, Jacopo
  last_name: Vialetto
- first_name: Lucio
  full_name: Isa, Lucio
  last_name: Isa
- first_name: Jeffrey S.
  full_name: Urbach, Jeffrey S.
  last_name: Urbach
- first_name: Roel P. A.
  full_name: Dullens, Roel P. A.
  last_name: Dullens
citation:
  ama: Ulbrich J-A, Fernández-Rico C, Rost B, et al. Effect of curvature on the diffusion
    of colloidal bananas. <i>Physical Review E</i>. 2023;107(4). doi:<a href="https://doi.org/10.1103/physreve.107.l042602">10.1103/physreve.107.l042602</a>
  apa: Ulbrich, J.-A., Fernández-Rico, C., Rost, B., Vialetto, J., Isa, L., Urbach,
    J. S., &#38; Dullens, R. P. A. (2023). Effect of curvature on the diffusion of
    colloidal bananas. <i>Physical Review E</i>. American Physical Society. <a href="https://doi.org/10.1103/physreve.107.l042602">https://doi.org/10.1103/physreve.107.l042602</a>
  chicago: Ulbrich, Justin-Aurel, Carla Fernández-Rico, Brian Rost, Jacopo Vialetto,
    Lucio Isa, Jeffrey S. Urbach, and Roel P. A. Dullens. “Effect of Curvature on
    the Diffusion of Colloidal Bananas.” <i>Physical Review E</i>. American Physical
    Society, 2023. <a href="https://doi.org/10.1103/physreve.107.l042602">https://doi.org/10.1103/physreve.107.l042602</a>.
  ieee: J.-A. Ulbrich <i>et al.</i>, “Effect of curvature on the diffusion of colloidal
    bananas,” <i>Physical Review E</i>, vol. 107, no. 4. American Physical Society,
    2023.
  ista: Ulbrich J-A, Fernández-Rico C, Rost B, Vialetto J, Isa L, Urbach JS, Dullens
    RPA. 2023. Effect of curvature on the diffusion of colloidal bananas. Physical
    Review E. 107(4), L042602.
  mla: Ulbrich, Justin-Aurel, et al. “Effect of Curvature on the Diffusion of Colloidal
    Bananas.” <i>Physical Review E</i>, vol. 107, no. 4, L042602, American Physical
    Society, 2023, doi:<a href="https://doi.org/10.1103/physreve.107.l042602">10.1103/physreve.107.l042602</a>.
  short: J.-A. Ulbrich, C. Fernández-Rico, B. Rost, J. Vialetto, L. Isa, J.S. Urbach,
    R.P.A. Dullens, Physical Review E 107 (2023).
date_created: 2026-06-30T06:32:12Z
date_published: 2023-04-21T00:00:00Z
date_updated: 2026-07-15T07:09:52Z
day: '21'
ddc:
- '530'
doi: 10.1103/physreve.107.l042602
extern: '1'
external_id:
  arxiv:
  - '2211.07274'
has_accepted_license: '1'
intvolume: '       107'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2211.07274
month: '04'
oa: 1
oa_version: Preprint
publication: Physical Review E
publication_identifier:
  eissn:
  - 2470-0053
  issn:
  - 2470-0045
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Effect of curvature on the diffusion of colloidal bananas
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 107
year: '2023'
...
---
_id: '12675'
abstract:
- lang: eng
  text: Aromatic side chains are important reporters of the plasticity of proteins,
    and often form important contacts in protein--protein interactions. By studying
    a pair of structurally homologous cross-β amyloid fibrils, HET-s and HELLF, with
    a specific isotope-labeling approach and magic-angle-spinning (MAS) NMR, we have
    characterized the dynamic behavior of Phe and Tyr aromatic rings to show that
    the hydrophobic amyloid core is rigid, without any sign of "breathing motions"
    over hundreds of milliseconds at least. Aromatic residues exposed at the fibril
    surface have a rigid ring axis but undergo ring flips, on a variety of time scales
    from ns to µs. Our approach provides direct insight into hydrophobic-core motions,
    enabling a better evaluation of the conformational heterogeneity generated from
    a NMR structural ensemble of such amyloid cross-β architecture.
acknowledgement: We thank AlbertA. Smith (Leipzig)for insightful discussions. This
  work was supported by funding from the European Research Council (StG-2012-311318
  to P.S.) and used the platforms of the Grenoble Instruct-ERIC center (ISBG;UMS 3518
  CNRS-CEA-UJF-EMBL) within the Grenoble Partnership for Structural Biology(PSB) and
  facilities and expertiseof the Biophysical and Structural Chemistry platform (BPCS)
  at IECB,CNRSUAR3033,INSERMUS001 and Bordeaux University.
article_number: e202219314
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Lea Marie
  full_name: Becker, Lea Marie
  id: 36336939-eb97-11eb-a6c2-c83f1214ca79
  last_name: Becker
  orcid: 0000-0002-6401-5151
- first_name: Mélanie
  full_name: Berbon, Mélanie
  last_name: Berbon
- first_name: Alicia
  full_name: Vallet, Alicia
  last_name: Vallet
- first_name: Axelle
  full_name: Grelard, Axelle
  last_name: Grelard
- first_name: Estelle
  full_name: Morvan, Estelle
  last_name: Morvan
- first_name: Benjamin
  full_name: Bardiaux, Benjamin
  last_name: Bardiaux
- first_name: Roman
  full_name: Lichtenecker, Roman
  last_name: Lichtenecker
- first_name: Matthias
  full_name: Ernst, Matthias
  last_name: Ernst
- first_name: Antoine
  full_name: Loquet, Antoine
  last_name: Loquet
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
citation:
  ama: Becker LM, Berbon M, Vallet A, et al. The rigid core and flexible surface of
    amyloid fibrils probed by Magic‐Angle Spinning NMR of aromatic residues. <i>Angewandte
    Chemie International Edition</i>. 2023;62(19). doi:<a href="https://doi.org/10.1002/anie.202219314">10.1002/anie.202219314</a>
  apa: Becker, L. M., Berbon, M., Vallet, A., Grelard, A., Morvan, E., Bardiaux, B.,
    … Schanda, P. (2023). The rigid core and flexible surface of amyloid fibrils probed
    by Magic‐Angle Spinning NMR of aromatic residues. <i>Angewandte Chemie International
    Edition</i>. Wiley. <a href="https://doi.org/10.1002/anie.202219314">https://doi.org/10.1002/anie.202219314</a>
  chicago: Becker, Lea Marie, Mélanie Berbon, Alicia Vallet, Axelle Grelard, Estelle
    Morvan, Benjamin Bardiaux, Roman Lichtenecker, Matthias Ernst, Antoine Loquet,
    and Paul Schanda. “The Rigid Core and Flexible Surface of Amyloid Fibrils Probed
    by Magic‐Angle Spinning NMR of Aromatic Residues.” <i>Angewandte Chemie International
    Edition</i>. Wiley, 2023. <a href="https://doi.org/10.1002/anie.202219314">https://doi.org/10.1002/anie.202219314</a>.
  ieee: L. M. Becker <i>et al.</i>, “The rigid core and flexible surface of amyloid
    fibrils probed by Magic‐Angle Spinning NMR of aromatic residues,” <i>Angewandte
    Chemie International Edition</i>, vol. 62, no. 19. Wiley, 2023.
  ista: Becker LM, Berbon M, Vallet A, Grelard A, Morvan E, Bardiaux B, Lichtenecker
    R, Ernst M, Loquet A, Schanda P. 2023. The rigid core and flexible surface of
    amyloid fibrils probed by Magic‐Angle Spinning NMR of aromatic residues. Angewandte
    Chemie International Edition. 62(19), e202219314.
  mla: Becker, Lea Marie, et al. “The Rigid Core and Flexible Surface of Amyloid Fibrils
    Probed by Magic‐Angle Spinning NMR of Aromatic Residues.” <i>Angewandte Chemie
    International Edition</i>, vol. 62, no. 19, e202219314, Wiley, 2023, doi:<a href="https://doi.org/10.1002/anie.202219314">10.1002/anie.202219314</a>.
  short: L.M. Becker, M. Berbon, A. Vallet, A. Grelard, E. Morvan, B. Bardiaux, R.
    Lichtenecker, M. Ernst, A. Loquet, P. Schanda, Angewandte Chemie International
    Edition 62 (2023).
corr_author: '1'
date_created: 2023-02-24T10:45:01Z
date_published: 2023-05-01T00:00:00Z
date_updated: 2026-07-20T09:49:12Z
day: '01'
ddc:
- '540'
department:
- _id: GradSch
- _id: PaSc
doi: 10.1002/anie.202219314
external_id:
  isi:
  - '000956919900001'
  pmid:
  - '36738230'
file:
- access_level: open_access
  checksum: 7dd083ed8850faa55c34e411ed390de9
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  creator: dernst
  date_created: 2023-08-16T12:33:31Z
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  success: 1
file_date_updated: 2023-08-16T12:33:31Z
has_accepted_license: '1'
intvolume: '        62'
isi: 1
issue: '19'
keyword:
- General Chemistry
- Catalysis
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
  eissn:
  - 1521-3773
  issn:
  - 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA website
    relation: press_release
    url: https://ista.ac.at/en/news/dancing-styles-of-atoms/
  record:
  - id: '12497'
    relation: research_data
    status: public
  - id: '14861'
    relation: other
    status: public
  - id: '22334'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: The rigid core and flexible surface of amyloid fibrils probed by Magic‐Angle
  Spinning NMR of aromatic residues
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2023'
...
---
_id: '12114'
abstract:
- lang: eng
  text: 'Probing the dynamics of aromatic side chains provides important insights
    into the behavior of a protein because flips of aromatic rings in a protein’s
    hydrophobic core report on breathing motion involving a large part of the protein.
    Inherently invisible to crystallography, aromatic motions have been primarily
    studied by solution NMR. The question how packing of proteins in crystals affects
    ring flips has, thus, remained largely unexplored. Here we apply magic-angle spinning
    NMR, advanced phenylalanine 1H-13C/2H isotope labeling and MD simulation to a
    protein in three different crystal packing environments to shed light onto possible
    impact of packing on ring flips. The flips of the two Phe residues in ubiquitin,
    both surface exposed, appear remarkably conserved in the different crystal forms,
    even though the intermolecular packing is quite different: Phe4 flips on a ca.
    10–20 ns time scale, and Phe45 are broadened in all crystals, presumably due to
    µs motion. Our findings suggest that intramolecular influences are more important
    for ring flips than intermolecular (packing) effects.'
acknowledgement: The NMR platform in Grenoble is part of the Grenoble Instruct-ERIC
  center (ISBG; UAR 3518 CNRS-CEA-UGA-EMBL) within the Grenoble Partnership for Structural
  Biology (PSB), supported by FRISBI (ANR-10-INBS-0005-02) and GRAL, financed within
  the University Grenoble Alpes graduate school (Ecoles Universitaires de Recherche)
  CBH-EUR-GS (ANR-17-EURE-0003). This work was supported by the European Research
  Council (StG-2012-311318-ProtDyn2Function to P.S.) and used the platforms of the
  Grenoble Instruct Center (ISBG; UMS 3518 CNRS-CEA-UJF-EMBL) with support from FRISBI
  (ANR-10-INSB-05–02) and GRAL (ANR-10-LABX-49–01) within the Grenoble Partnership
  for Structural Biology (PSB). We would like to thank Sergei Izmailov for developing
  and maintaining the pyxmolpp2 library. N.R.S. acknowledges support from St. Petersburg
  State University in a form of the grant 92425251 and the access to the MRR, MCT
  and CAMR resource centers. P.S. thanks Malcolm Levitt for pointing out the fact
  that “tensor asymmetry” is better called “tensor biaxiality”.
article_number: '100079'
article_processing_charge: No
article_type: original
author:
- first_name: Diego F.
  full_name: Gauto, Diego F.
  last_name: Gauto
- first_name: Olga O.
  full_name: Lebedenko, Olga O.
  last_name: Lebedenko
- first_name: Lea Marie
  full_name: Becker, Lea Marie
  id: 36336939-eb97-11eb-a6c2-c83f1214ca79
  last_name: Becker
  orcid: 0000-0002-6401-5151
- first_name: Isabel
  full_name: Ayala, Isabel
  last_name: Ayala
- first_name: Roman
  full_name: Lichtenecker, Roman
  last_name: Lichtenecker
- first_name: Nikolai R.
  full_name: Skrynnikov, Nikolai R.
  last_name: Skrynnikov
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
citation:
  ama: 'Gauto DF, Lebedenko OO, Becker LM, et al. Aromatic ring flips in differently
    packed ubiquitin protein crystals from MAS NMR and MD. <i>Journal of Structural
    Biology: X</i>. 2023;7. doi:<a href="https://doi.org/10.1016/j.yjsbx.2022.100079">10.1016/j.yjsbx.2022.100079</a>'
  apa: 'Gauto, D. F., Lebedenko, O. O., Becker, L. M., Ayala, I., Lichtenecker, R.,
    Skrynnikov, N. R., &#38; Schanda, P. (2023). Aromatic ring flips in differently
    packed ubiquitin protein crystals from MAS NMR and MD. <i>Journal of Structural
    Biology: X</i>. Elsevier. <a href="https://doi.org/10.1016/j.yjsbx.2022.100079">https://doi.org/10.1016/j.yjsbx.2022.100079</a>'
  chicago: 'Gauto, Diego F., Olga O. Lebedenko, Lea Marie Becker, Isabel Ayala, Roman
    Lichtenecker, Nikolai R. Skrynnikov, and Paul Schanda. “Aromatic Ring Flips in
    Differently Packed Ubiquitin Protein Crystals from MAS NMR and MD.” <i>Journal
    of Structural Biology: X</i>. Elsevier, 2023. <a href="https://doi.org/10.1016/j.yjsbx.2022.100079">https://doi.org/10.1016/j.yjsbx.2022.100079</a>.'
  ieee: 'D. F. Gauto <i>et al.</i>, “Aromatic ring flips in differently packed ubiquitin
    protein crystals from MAS NMR and MD,” <i>Journal of Structural Biology: X</i>,
    vol. 7. Elsevier, 2023.'
  ista: 'Gauto DF, Lebedenko OO, Becker LM, Ayala I, Lichtenecker R, Skrynnikov NR,
    Schanda P. 2023. Aromatic ring flips in differently packed ubiquitin protein crystals
    from MAS NMR and MD. Journal of Structural Biology: X. 7, 100079.'
  mla: 'Gauto, Diego F., et al. “Aromatic Ring Flips in Differently Packed Ubiquitin
    Protein Crystals from MAS NMR and MD.” <i>Journal of Structural Biology: X</i>,
    vol. 7, 100079, Elsevier, 2023, doi:<a href="https://doi.org/10.1016/j.yjsbx.2022.100079">10.1016/j.yjsbx.2022.100079</a>.'
  short: 'D.F. Gauto, O.O. Lebedenko, L.M. Becker, I. Ayala, R. Lichtenecker, N.R.
    Skrynnikov, P. Schanda, Journal of Structural Biology: X 7 (2023).'
corr_author: '1'
date_created: 2023-01-12T11:55:38Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2026-07-20T09:49:12Z
day: '01'
ddc:
- '570'
department:
- _id: PaSc
doi: 10.1016/j.yjsbx.2022.100079
external_id:
  pmid:
  - '36578472'
file:
- access_level: open_access
  checksum: b4b1c10a31018aafe053b7d55a470e54
  content_type: application/pdf
  creator: dernst
  date_created: 2023-08-16T09:36:28Z
  date_updated: 2023-08-16T09:36:28Z
  file_id: '14064'
  file_name: 2023_JourStrucBiologyX_Gauto.pdf
  file_size: 5132322
  relation: main_file
  success: 1
file_date_updated: 2023-08-16T09:36:28Z
has_accepted_license: '1'
intvolume: '         7'
keyword:
- Structural Biology
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: 'Journal of Structural Biology: X'
publication_identifier:
  issn:
  - 2590-1524
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '22334'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Aromatic ring flips in differently packed ubiquitin protein crystals from MAS
  NMR and MD
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2023'
...
---
_id: '13968'
abstract:
- lang: eng
  text: The use of multimodal readout mechanisms next to label-free real-time monitoring
    of biomolecular interactions can provide valuable insight into surface-based reaction
    mechanisms. To this end, the combination of an electrolyte-gated field-effect
    transistor (EG-FET) with a fiber optic-coupled surface plasmon resonance (FO-SPR)
    probe serving as gate electrode has been investigated to deconvolute surface mass
    and charge density variations associated to surface reactions. However, applying
    an electrochemical potential on such gold-coated FO-SPR gate electrodes can induce
    gradual morphological changes of the thin gold film, leading to an irreversible
    blue-shift of the SPR wavelength and a substantial signal drift. We show that
    mild annealing leads to optical and electronic signal stabilization (20-fold lower
    signal drift than as-sputtered fiber optic gates) and improved overall analytical
    performance characteristics. The thermal treatment prevents morphological changes
    of the thin gold-film occurring during operation, hence providing reliable and
    stable data immediately upon gate voltage application. Thus, the readout output
    of both transducing principles, the optical FO-SPR and electronic EG-FET, stays
    constant throughout the whole sensing time-window and the long-term effect of
    thermal treatment is also improved, providing stable signals even after 1 year
    of storage. Annealing should therefore be considered a necessary modification
    for applying fiber optic gate electrodes in real-time multimodal investigations
    of surface reactions at the solid-liquid interface.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: "This project has received funding from the European Union’s Horizon
  2020 Research and Innovation Programme under the Marie Skłodowska-Curie grant agreement
  No. 813863–BORGES. We further thank the office of the Federal Government of Lower
  Austria, K3-Group–Culture, Science and Education, for their financial support as
  part of the project “Responsive Wound Dressing”. We gratefully acknowledge the financial
  support from the Austrian Research Promotion Agency (FFG; 888067).\r\nWe thank the
  Electron Microscopy Facility at IST Austria for their support with sputter coating
  the FO tips and Bernhard Pichler from AIT for software development to facilitate
  data evaluation."
article_number: '1202132'
article_processing_charge: Yes
article_type: original
author:
- first_name: Roger
  full_name: Hasler, Roger
  last_name: Hasler
- first_name: Marie Helene
  full_name: Steger-Polt, Marie Helene
  last_name: Steger-Polt
- first_name: Ciril
  full_name: Reiner-Rozman, Ciril
  last_name: Reiner-Rozman
- first_name: Stefan
  full_name: Fossati, Stefan
  last_name: Fossati
- first_name: Seungho
  full_name: Lee, Seungho
  id: BB243B88-D767-11E9-B658-BC13E6697425
  last_name: Lee
  orcid: 0000-0002-6962-8598
- first_name: Patrik
  full_name: Aspermair, Patrik
  last_name: Aspermair
- first_name: Christoph
  full_name: Kleber, Christoph
  last_name: Kleber
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Jakub
  full_name: Dostalek, Jakub
  last_name: Dostalek
- first_name: Wolfgang
  full_name: Knoll, Wolfgang
  last_name: Knoll
citation:
  ama: 'Hasler R, Steger-Polt MH, Reiner-Rozman C, et al. Optical and electronic signal
    stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time
    dual-mode biosensing. <i>Frontiers in Physics</i>. 2023;11. doi:<a href="https://doi.org/10.3389/fphy.2023.1202132">10.3389/fphy.2023.1202132</a>'
  apa: 'Hasler, R., Steger-Polt, M. H., Reiner-Rozman, C., Fossati, S., Lee, S., Aspermair,
    P., … Knoll, W. (2023). Optical and electronic signal stabilization of plasmonic
    fiber optic gate electrodes: Towards improved real-time dual-mode biosensing.
    <i>Frontiers in Physics</i>. Frontiers. <a href="https://doi.org/10.3389/fphy.2023.1202132">https://doi.org/10.3389/fphy.2023.1202132</a>'
  chicago: 'Hasler, Roger, Marie Helene Steger-Polt, Ciril Reiner-Rozman, Stefan Fossati,
    Seungho Lee, Patrik Aspermair, Christoph Kleber, Maria Ibáñez, Jakub Dostalek,
    and Wolfgang Knoll. “Optical and Electronic Signal Stabilization of Plasmonic
    Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing.”
    <i>Frontiers in Physics</i>. Frontiers, 2023. <a href="https://doi.org/10.3389/fphy.2023.1202132">https://doi.org/10.3389/fphy.2023.1202132</a>.'
  ieee: 'R. Hasler <i>et al.</i>, “Optical and electronic signal stabilization of
    plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing,”
    <i>Frontiers in Physics</i>, vol. 11. Frontiers, 2023.'
  ista: 'Hasler R, Steger-Polt MH, Reiner-Rozman C, Fossati S, Lee S, Aspermair P,
    Kleber C, Ibáñez M, Dostalek J, Knoll W. 2023. Optical and electronic signal stabilization
    of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode
    biosensing. Frontiers in Physics. 11, 1202132.'
  mla: 'Hasler, Roger, et al. “Optical and Electronic Signal Stabilization of Plasmonic
    Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing.”
    <i>Frontiers in Physics</i>, vol. 11, 1202132, Frontiers, 2023, doi:<a href="https://doi.org/10.3389/fphy.2023.1202132">10.3389/fphy.2023.1202132</a>.'
  short: R. Hasler, M.H. Steger-Polt, C. Reiner-Rozman, S. Fossati, S. Lee, P. Aspermair,
    C. Kleber, M. Ibáñez, J. Dostalek, W. Knoll, Frontiers in Physics 11 (2023).
date_created: 2023-08-06T22:01:11Z
date_published: 2023-07-14T00:00:00Z
date_updated: 2026-07-22T06:16:47Z
day: '14'
ddc:
- '530'
department:
- _id: MaIb
doi: 10.3389/fphy.2023.1202132
external_id:
  isi:
  - '001038636400001'
file:
- access_level: open_access
  checksum: fb36dda665e57bab006a000bf0faacd5
  content_type: application/pdf
  creator: dernst
  date_created: 2023-08-07T07:48:11Z
  date_updated: 2023-08-07T07:48:11Z
  file_id: '13978'
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file_date_updated: 2023-08-07T07:48:11Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Frontiers in Physics
publication_identifier:
  eissn:
  - 2296-424X
publication_status: published
publisher: Frontiers
quality_controlled: '1'
related_material:
  record:
  - id: '19308'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: 'Optical and electronic signal stabilization of plasmonic fiber optic gate
  electrodes: Towards improved real-time dual-mode biosensing'
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type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2023'
...
---
OA_place: repository
OA_type: green
_id: '19308'
abstract:
- lang: eng
  text: 'This Dataset contains the raw data from the following publication: "Optical
    and electronic signal stabilization of plasmonic fiber optic gate electrodes:
    towards improved real-time dual-mode biosensing" (DOI 10.3389/fphy.2023.1202132)'
article_processing_charge: No
author:
- first_name: Roger
  full_name: Hasler, Roger
  last_name: Hasler
- first_name: Marie-Helene
  full_name: Polt, Marie-Helene
  last_name: Polt
- first_name: Ciril
  full_name: Reiner-Rozman, Ciril
  last_name: Reiner-Rozman
- first_name: Stefan
  full_name: Fossati, Stefan
  last_name: Fossati
- first_name: Seungho
  full_name: Lee, Seungho
  last_name: Lee
- first_name: Patrik
  full_name: Aspermair, Patrik
  last_name: Aspermair
- first_name: Christoph
  full_name: Kleber, Christoph
  last_name: Kleber
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Jakub
  full_name: Dostalek, Jakub
  last_name: Dostalek
- first_name: Wolfgang
  full_name: Knoll, Wolfgang
  last_name: Knoll
citation:
  ama: 'Hasler R, Polt M-H, Reiner-Rozman C, et al. Optical and electronic signal
    stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time
    dual-mode biosensing. 2023. doi:<a href="https://doi.org/10.5281/ZENODO.7716920">10.5281/ZENODO.7716920</a>'
  apa: 'Hasler, R., Polt, M.-H., Reiner-Rozman, C., Fossati, S., Lee, S., Aspermair,
    P., … Knoll, W. (2023). Optical and electronic signal stabilization of plasmonic
    fiber optic gate electrodes: Towards improved real-time dual-mode biosensing.
    Zenodo. <a href="https://doi.org/10.5281/ZENODO.7716920">https://doi.org/10.5281/ZENODO.7716920</a>'
  chicago: 'Hasler, Roger, Marie-Helene Polt, Ciril Reiner-Rozman, Stefan Fossati,
    Seungho Lee, Patrik Aspermair, Christoph Kleber, Maria Ibáñez, Jakub Dostalek,
    and Wolfgang Knoll. “Optical and Electronic Signal Stabilization of Plasmonic
    Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing.”
    Zenodo, 2023. <a href="https://doi.org/10.5281/ZENODO.7716920">https://doi.org/10.5281/ZENODO.7716920</a>.'
  ieee: 'R. Hasler <i>et al.</i>, “Optical and electronic signal stabilization of
    plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing.”
    Zenodo, 2023.'
  ista: 'Hasler R, Polt M-H, Reiner-Rozman C, Fossati S, Lee S, Aspermair P, Kleber
    C, Ibáñez M, Dostalek J, Knoll W. 2023. Optical and electronic signal stabilization
    of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode
    biosensing, Zenodo, <a href="https://doi.org/10.5281/ZENODO.7716920">10.5281/ZENODO.7716920</a>.'
  mla: 'Hasler, Roger, et al. <i>Optical and Electronic Signal Stabilization of Plasmonic
    Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing</i>.
    Zenodo, 2023, doi:<a href="https://doi.org/10.5281/ZENODO.7716920">10.5281/ZENODO.7716920</a>.'
  short: R. Hasler, M.-H. Polt, C. Reiner-Rozman, S. Fossati, S. Lee, P. Aspermair,
    C. Kleber, M. Ibáñez, J. Dostalek, W. Knoll, (2023).
date_created: 2025-03-07T08:40:58Z
date_published: 2023-07-14T00:00:00Z
date_updated: 2026-07-22T06:16:48Z
day: '14'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.5281/ZENODO.7716920
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/ZENODO.7716920
month: '07'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
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    relation: used_in_publication
    status: public
status: public
title: 'Optical and electronic signal stabilization of plasmonic fiber optic gate
  electrodes: Towards improved real-time dual-mode biosensing'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '22373'
abstract:
- lang: eng
  text: "Data dissemination is a fundamental task in distributed computing. This paper
    studies broadcast problems in various innovative models where the communication
    network connecting n processes is dynamic (e.g., due to mobility or failures)
    and controlled by an adversary. \r\nIn the first model, the processes transitively
    communicate their ids in synchronous rounds along a rooted tree given in each
    round by the adversary whose goal is to maximize the number of rounds until at
    least one id is known by all processes. Previous research has shown a ⌈(3n-1)/2⌉-2
    lower bound and an O(nlog log n) upper bound. We show the first linear upper bound
    for this problem, namely ⌈(1+√2) n-1⌉ ≈ 2.4n.\r\nWe extend these results to the
    setting where the adversary gives in each round k-disjoint forests and their goal
    is to maximize the number of rounds until there is a set of k ids such that each
    process knows of at least one of them. We give a ⌈3(n-k)/2⌉-1 lower bound and
    a (π²+6)/6 n+1 ≈ 2.6n upper bound for this problem.\r\nFinally, we study the setting
    where the adversary gives in each round a directed graph with k roots and their
    goal is to maximize the number of rounds until there exist k ids that are known
    by all processes. We give a ⌈3(n-3k)/2⌉+2 lower bound and a ⌈(1+√2)n⌉+k-1 ≈ 2.4n+k
    upper bound for this problem.\r\nFor the two latter problems no upper or lower
    bounds were previously known."
acknowledgement: " This project has received funding from the European Research Council
  (ERC) under\r\nthe European Union’s Horizon 2020 research and innovation programme
  (grant agreement No.\r\n101019564). This work was further supported by the Austrian
  Science Fund (FWF) and netIDEE\r\nSCIENCE project P 33775-N, as well as the FWF
  project I 4800-N (ADVISE)"
alternative_title:
- LIPIcs
article_number: '47'
article_processing_charge: No
arxiv: 1
author:
- first_name: Antoine
  full_name: El-Hayek, Antoine
  id: 888a098e-fcac-11ee-aff7-d347be57b725
  last_name: El-Hayek
  orcid: 0000-0003-4268-7368
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Stefan
  full_name: Schmid, Stefan
  last_name: Schmid
  orcid: 0000-0002-7798-1711
citation:
  ama: 'El-Hayek A, Henzinger M, Schmid S. Asymptotically tight bounds on the time
    complexity of broadcast and its variants in dynamic networks. In: Tauman Kalai
    Y, ed. <i>14th Innovations in Theoretical Computer Science Conference</i>. Vol
    251. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:<a href="https://doi.org/10.4230/LIPICS.ITCS.2023.47">10.4230/LIPICS.ITCS.2023.47</a>'
  apa: 'El-Hayek, A., Henzinger, M., &#38; Schmid, S. (2023). Asymptotically tight
    bounds on the time complexity of broadcast and its variants in dynamic networks.
    In Y. Tauman Kalai (Ed.), <i>14th Innovations in Theoretical Computer Science
    Conference</i> (Vol. 251). Cambridge, Massachusetts, USA: Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik. <a href="https://doi.org/10.4230/LIPICS.ITCS.2023.47">https://doi.org/10.4230/LIPICS.ITCS.2023.47</a>'
  chicago: El-Hayek, Antoine, Monika Henzinger, and Stefan Schmid. “Asymptotically
    Tight Bounds on the Time Complexity of Broadcast and Its Variants in Dynamic Networks.”
    In <i>14th Innovations in Theoretical Computer Science Conference</i>, edited
    by Yael Tauman Kalai, Vol. 251. Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2023. <a href="https://doi.org/10.4230/LIPICS.ITCS.2023.47">https://doi.org/10.4230/LIPICS.ITCS.2023.47</a>.
  ieee: A. El-Hayek, M. Henzinger, and S. Schmid, “Asymptotically tight bounds on
    the time complexity of broadcast and its variants in dynamic networks,” in <i>14th
    Innovations in Theoretical Computer Science Conference</i>, Cambridge, Massachusetts,
    USA, 2023, vol. 251.
  ista: 'El-Hayek A, Henzinger M, Schmid S. 2023. Asymptotically tight bounds on the
    time complexity of broadcast and its variants in dynamic networks. 14th Innovations
    in Theoretical Computer Science Conference. ITCS: Innovations in Theoretical Computer
    Science, LIPIcs, vol. 251, 47.'
  mla: El-Hayek, Antoine, et al. “Asymptotically Tight Bounds on the Time Complexity
    of Broadcast and Its Variants in Dynamic Networks.” <i>14th Innovations in Theoretical
    Computer Science Conference</i>, edited by Yael Tauman Kalai, vol. 251, 47, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:<a href="https://doi.org/10.4230/LIPICS.ITCS.2023.47">10.4230/LIPICS.ITCS.2023.47</a>.
  short: A. El-Hayek, M. Henzinger, S. Schmid, in:, Y. Tauman Kalai (Ed.), 14th Innovations
    in Theoretical Computer Science Conference, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2023.
conference:
  end_date: 2023-01-13
  location: Cambridge, Massachusetts, USA
  name: 'ITCS: Innovations in Theoretical Computer Science'
  start_date: 2023-01-10
date_created: 2026-07-20T11:45:04Z
date_published: 2023-02-01T00:00:00Z
date_updated: 2026-07-24T12:48:29Z
day: '01'
ddc:
- '000'
doi: 10.4230/LIPICS.ITCS.2023.47
editor:
- first_name: Yael
  full_name: Tauman Kalai, Yael
  last_name: Tauman Kalai
extern: '1'
external_id:
  arxiv:
  - '2211.10151'
file:
- access_level: open_access
  checksum: d7f45fdcbc5fccd61db69f56d775c636
  content_type: application/pdf
  creator: cchlebak
  date_created: 2026-07-22T08:04:03Z
  date_updated: 2026-07-22T08:04:03Z
  file_id: '22383'
  file_name: 2023_LIPIcs_El-Hayek.pdf
  file_size: 1077427
  relation: main_file
  success: 1
file_date_updated: 2026-07-22T08:04:03Z
has_accepted_license: '1'
intvolume: '       251'
keyword:
- broadcast
- cover
- k-broadcast
- dynamic radius
- dynamic graphs
- oblivious message adversary
- time complexity
- Theory of computation → Distributed algorithms
- Networks → Network algorithms
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: 14th Innovations in Theoretical Computer Science Conference
publication_identifier:
  isbn:
  - '9783959772631'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
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scopus_import: '1'
status: public
title: Asymptotically tight bounds on the time complexity of broadcast and its variants
  in dynamic networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
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  short: CC BY (4.0)
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 251
year: '2023'
...
