---
_id: '12278'
abstract:
- lang: eng
text: Mercury telluride (HgTe) thin films with a critical thickness of 6.5 nm are
predicted to possess a gapless Dirac-like band structure. We report a comprehensive
study on gated and optically doped samples by magnetooptical spectroscopy in the
THz range. The quasi-classical analysis of the cyclotron resonance allowed the
mapping of the band dispersion of Dirac charge carriers in a broad range of electron
and hole doping. A smooth transition through the charge neutrality point between
Dirac holes and electrons was observed. An additional peak coming from a second
type of holes with an almost density-independent mass of around 0.04m0 was detected
in the hole-doping range and attributed to an asymmetric spin splitting of the
Dirac cone. Spectroscopic evidence for disorder-induced band energy fluctuations
could not be detected in present cyclotron resonance experiments.
acknowledgement: "This work was supported by the Austrian Science Funds (W1243, I
3456-N27, I 5539-N).\r\nOpen Access Funding by the Austrian Science Fund (FWF)."
article_number: '2492'
article_processing_charge: Yes
article_type: original
author:
- first_name: Alexey
full_name: Shuvaev, Alexey
last_name: Shuvaev
- first_name: Uladzislau
full_name: Dziom, Uladzislau
id: 6A9A37C2-8C5C-11E9-AE53-F2FDE5697425
last_name: Dziom
orcid: 0000-0002-1648-0999
- first_name: Jan
full_name: Gospodarič, Jan
last_name: Gospodarič
- first_name: Elena G.
full_name: Novik, Elena G.
last_name: Novik
- first_name: Alena A.
full_name: Dobretsova, Alena A.
last_name: Dobretsova
- first_name: Nikolay N.
full_name: Mikhailov, Nikolay N.
last_name: Mikhailov
- first_name: Ze Don
full_name: Kvon, Ze Don
last_name: Kvon
- first_name: Andrei
full_name: Pimenov, Andrei
last_name: Pimenov
citation:
ama: Shuvaev A, Dziom V, Gospodarič J, et al. Band structure near the Dirac Point
in HgTe quantum wells with critical thickness. Nanomaterials. 2022;12(14).
doi:10.3390/nano12142492
apa: Shuvaev, A., Dziom, V., Gospodarič, J., Novik, E. G., Dobretsova, A. A., Mikhailov,
N. N., … Pimenov, A. (2022). Band structure near the Dirac Point in HgTe quantum
wells with critical thickness. Nanomaterials. MDPI. https://doi.org/10.3390/nano12142492
chicago: Shuvaev, Alexey, Vlad Dziom, Jan Gospodarič, Elena G. Novik, Alena A. Dobretsova,
Nikolay N. Mikhailov, Ze Don Kvon, and Andrei Pimenov. “Band Structure near the
Dirac Point in HgTe Quantum Wells with Critical Thickness.” Nanomaterials.
MDPI, 2022. https://doi.org/10.3390/nano12142492.
ieee: A. Shuvaev et al., “Band structure near the Dirac Point in HgTe quantum
wells with critical thickness,” Nanomaterials, vol. 12, no. 14. MDPI, 2022.
ista: Shuvaev A, Dziom V, Gospodarič J, Novik EG, Dobretsova AA, Mikhailov NN, Kvon
ZD, Pimenov A. 2022. Band structure near the Dirac Point in HgTe quantum wells
with critical thickness. Nanomaterials. 12(14), 2492.
mla: Shuvaev, Alexey, et al. “Band Structure near the Dirac Point in HgTe Quantum
Wells with Critical Thickness.” Nanomaterials, vol. 12, no. 14, 2492, MDPI,
2022, doi:10.3390/nano12142492.
short: A. Shuvaev, V. Dziom, J. Gospodarič, E.G. Novik, A.A. Dobretsova, N.N. Mikhailov,
Z.D. Kvon, A. Pimenov, Nanomaterials 12 (2022).
date_created: 2023-01-16T10:02:31Z
date_published: 2022-07-20T00:00:00Z
date_updated: 2025-06-11T13:45:36Z
day: '20'
ddc:
- '530'
department:
- _id: ZhAl
doi: 10.3390/nano12142492
external_id:
isi:
- '000834401600001'
pmid:
- '35889716'
file:
- access_level: open_access
checksum: efad6742f89f39a18bec63116dd689a0
content_type: application/pdf
creator: dernst
date_created: 2023-01-30T11:16:54Z
date_updated: 2023-01-30T11:16:54Z
file_id: '12459'
file_name: 2022_Nanomaterials_Shuvaev.pdf
file_size: 464840
relation: main_file
success: 1
file_date_updated: 2023-01-30T11:16:54Z
has_accepted_license: '1'
intvolume: ' 12'
isi: 1
issue: '14'
keyword:
- General Materials Science
- General Chemical Engineering
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nanomaterials
publication_identifier:
issn:
- 2079-4991
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Band structure near the Dirac Point in HgTe quantum wells with critical thickness
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2022'
...
---
_id: '12279'
abstract:
- lang: eng
text: We report frictional drag reduction and a complete flow relaminarization of
elastic turbulence (ET) at vanishing inertia in a viscoelastic channel flow past
an obstacle. We show that the intensity of the observed elastic waves and wall-normal
vorticity correlate well with the measured drag above the onset of ET. Moreover,
we find that the elastic wave frequency grows with the Weissenberg number, and
at sufficiently high frequency it causes a decay of the elastic waves, resulting
in ET attenuation and drag reduction. Thus, this allows us to substantiate a physical
mechanism, involving the interaction of elastic waves with wall-normal vorticity
fluctuations, leading to the drag reduction and relaminarization phenomena at
low Reynolds number.
acknowledgement: "We thank G. Falkovich for discussion and Guy Han for technical support.
We are grateful to N. Jha for his help in µPIV measurements. This work is partially
supported by the grants from\r\nIsrael Science Foundation (ISF; grant #882/15 and
grant #784/19) and Binational USA-Israel Foundation (BSF;grant #2016145). "
article_number: L081301
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: M. Vijay
full_name: Kumar, M. Vijay
last_name: Kumar
- first_name: Atul
full_name: Varshney, Atul
id: 2A2006B2-F248-11E8-B48F-1D18A9856A87
last_name: Varshney
orcid: 0000-0002-3072-5999
- first_name: Dongyang
full_name: Li, Dongyang
last_name: Li
- first_name: Victor
full_name: Steinberg, Victor
last_name: Steinberg
citation:
ama: Kumar MV, Varshney A, Li D, Steinberg V. Relaminarization of elastic turbulence.
Physical Review Fluids. 2022;7(8). doi:10.1103/physrevfluids.7.l081301
apa: Kumar, M. V., Varshney, A., Li, D., & Steinberg, V. (2022). Relaminarization
of elastic turbulence. Physical Review Fluids. American Physical Society.
https://doi.org/10.1103/physrevfluids.7.l081301
chicago: Kumar, M. Vijay, Atul Varshney, Dongyang Li, and Victor Steinberg. “Relaminarization
of Elastic Turbulence.” Physical Review Fluids. American Physical Society,
2022. https://doi.org/10.1103/physrevfluids.7.l081301.
ieee: M. V. Kumar, A. Varshney, D. Li, and V. Steinberg, “Relaminarization of elastic
turbulence,” Physical Review Fluids, vol. 7, no. 8. American Physical Society,
2022.
ista: Kumar MV, Varshney A, Li D, Steinberg V. 2022. Relaminarization of elastic
turbulence. Physical Review Fluids. 7(8), L081301.
mla: Kumar, M. Vijay, et al. “Relaminarization of Elastic Turbulence.” Physical
Review Fluids, vol. 7, no. 8, L081301, American Physical Society, 2022, doi:10.1103/physrevfluids.7.l081301.
short: M.V. Kumar, A. Varshney, D. Li, V. Steinberg, Physical Review Fluids 7 (2022).
corr_author: '1'
date_created: 2023-01-16T10:02:40Z
date_published: 2022-08-03T00:00:00Z
date_updated: 2024-10-09T21:03:55Z
day: '03'
department:
- _id: BjHo
doi: 10.1103/physrevfluids.7.l081301
external_id:
arxiv:
- '2205.12871'
isi:
- '000836397000001'
intvolume: ' 7'
isi: 1
issue: '8'
keyword:
- Fluid Flow and Transfer Processes
- Modeling and Simulation
- Computational Mechanics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.2205.12871'
month: '08'
oa: 1
oa_version: Preprint
publication: Physical Review Fluids
publication_identifier:
issn:
- 2469-990X
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Relaminarization of elastic turbulence
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 7
year: '2022'
...
---
_id: '12280'
abstract:
- lang: eng
text: 'In repeated interactions, players can use strategies that respond to the
outcome of previous rounds. Much of the existing literature on direct reciprocity
assumes that all competing individuals use the same strategy space. Here, we study
both learning and evolutionary dynamics of players that differ in the strategy
space they explore. We focus on the infinitely repeated donation game and compare
three natural strategy spaces: memory-1 strategies, which consider the last moves
of both players, reactive strategies, which respond to the last move of the co-player,
and unconditional strategies. These three strategy spaces differ in the memory
capacity that is needed. We compute the long term average payoff that is achieved
in a pairwise learning process. We find that smaller strategy spaces can dominate
larger ones. For weak selection, unconditional players dominate both reactive
and memory-1 players. For intermediate selection, reactive players dominate memory-1
players. Only for strong selection and low cost-to-benefit ratio, memory-1 players
dominate the others. We observe that the supergame between strategy spaces can
be a social dilemma: maximum payoff is achieved if both players explore a larger
strategy space, but smaller strategy spaces dominate.'
acknowledgement: "This work was supported by the European Research Council (https://erc.europa.eu/)\r\nCoG
863818 (ForM-SMArt) (to K.C.), and the European Research Council Starting Grant
850529: E-DIRECT (to C.H.). The funders had no role in study design, data collection
and analysis, decision to publish, or preparation of the manuscript."
article_number: e1010149
article_processing_charge: No
article_type: original
author:
- first_name: Laura
full_name: Schmid, Laura
id: 38B437DE-F248-11E8-B48F-1D18A9856A87
last_name: Schmid
orcid: 0000-0002-6978-7329
- first_name: Christian
full_name: Hilbe, Christian
id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
last_name: Hilbe
orcid: 0000-0001-5116-955X
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Martin
full_name: Nowak, Martin
last_name: Nowak
citation:
ama: Schmid L, Hilbe C, Chatterjee K, Nowak M. Direct reciprocity between individuals
that use different strategy spaces. PLOS Computational Biology. 2022;18(6).
doi:10.1371/journal.pcbi.1010149
apa: Schmid, L., Hilbe, C., Chatterjee, K., & Nowak, M. (2022). Direct reciprocity
between individuals that use different strategy spaces. PLOS Computational
Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1010149
chicago: Schmid, Laura, Christian Hilbe, Krishnendu Chatterjee, and Martin Nowak.
“Direct Reciprocity between Individuals That Use Different Strategy Spaces.” PLOS
Computational Biology. Public Library of Science, 2022. https://doi.org/10.1371/journal.pcbi.1010149.
ieee: L. Schmid, C. Hilbe, K. Chatterjee, and M. Nowak, “Direct reciprocity between
individuals that use different strategy spaces,” PLOS Computational Biology,
vol. 18, no. 6. Public Library of Science, 2022.
ista: Schmid L, Hilbe C, Chatterjee K, Nowak M. 2022. Direct reciprocity between
individuals that use different strategy spaces. PLOS Computational Biology. 18(6),
e1010149.
mla: Schmid, Laura, et al. “Direct Reciprocity between Individuals That Use Different
Strategy Spaces.” PLOS Computational Biology, vol. 18, no. 6, e1010149,
Public Library of Science, 2022, doi:10.1371/journal.pcbi.1010149.
short: L. Schmid, C. Hilbe, K. Chatterjee, M. Nowak, PLOS Computational Biology
18 (2022).
corr_author: '1'
date_created: 2023-01-16T10:02:51Z
date_published: 2022-06-14T00:00:00Z
date_updated: 2025-04-14T07:52:47Z
day: '14'
ddc:
- '000'
- '570'
department:
- _id: KrCh
doi: 10.1371/journal.pcbi.1010149
ec_funded: 1
external_id:
isi:
- '000843626800031'
pmid:
- '35700167'
file:
- access_level: open_access
checksum: 31b6b311b6731f1658277a9dfff6632c
content_type: application/pdf
creator: dernst
date_created: 2023-01-30T11:28:13Z
date_updated: 2023-01-30T11:28:13Z
file_id: '12460'
file_name: 2022_PlosCompBio_Schmid.pdf
file_size: 3143222
relation: main_file
success: 1
file_date_updated: 2023-01-30T11:28:13Z
has_accepted_license: '1'
intvolume: ' 18'
isi: 1
issue: '6'
keyword:
- Computational Theory and Mathematics
- Cellular and Molecular Neuroscience
- Genetics
- Molecular Biology
- Ecology
- Modeling and Simulation
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '863818'
name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: PLOS Computational Biology
publication_identifier:
eissn:
- 1553-7358
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Direct reciprocity between individuals that use different strategy spaces
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 18
year: '2022'
...
---
_id: '12281'
abstract:
- lang: eng
text: We study the hydrodynamic and hydrostatic limits of the one-dimensional open
symmetric inclusion process with slow boundary. Depending on the value of the
parameter tuning the interaction rate of the bulk of the system with the boundary,
we obtain a linear heat equation with either Dirichlet, Robin or Neumann boundary
conditions as hydrodynamic equation. In our approach, we combine duality and first-second
class particle techniques to reduce the scaling limit of the inclusion process
to the limiting behavior of a single, non-interacting, particle.
acknowledgement: "C.F. and P.G. thank FCT/Portugal for support through the project
UID/MAT/04459/2013.\r\nThis project has received funding from the European Research
Council (ERC) under the European Union’s Horizon 2020 research and innovative programme
(grant agreement No. 715734). F.S. was founded by the European Union’s Horizon 2020
research and innovation programme under the Marie-Skłodowska-Curie grant agreement
No. 754411.\r\nF.S. wishes to thank Joe P. Chen for some fruitful discussions at
an early stage of this work. F.S. thanks CAMGSD, IST, Lisbon, where part of this
work has been done, and the European research and innovative programme No. 715734
for the kind hospitality."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Chiara
full_name: Franceschini, Chiara
last_name: Franceschini
- first_name: Patrícia
full_name: Gonçalves, Patrícia
last_name: Gonçalves
- first_name: Federico
full_name: Sau, Federico
id: E1836206-9F16-11E9-8814-AEFDE5697425
last_name: Sau
citation:
ama: 'Franceschini C, Gonçalves P, Sau F. Symmetric inclusion process with slow
boundary: Hydrodynamics and hydrostatics. Bernoulli. 2022;28(2):1340-1381.
doi:10.3150/21-bej1390'
apa: 'Franceschini, C., Gonçalves, P., & Sau, F. (2022). Symmetric inclusion
process with slow boundary: Hydrodynamics and hydrostatics. Bernoulli.
Bernoulli Society for Mathematical Statistics and Probability. https://doi.org/10.3150/21-bej1390'
chicago: 'Franceschini, Chiara, Patrícia Gonçalves, and Federico Sau. “Symmetric
Inclusion Process with Slow Boundary: Hydrodynamics and Hydrostatics.” Bernoulli.
Bernoulli Society for Mathematical Statistics and Probability, 2022. https://doi.org/10.3150/21-bej1390.'
ieee: 'C. Franceschini, P. Gonçalves, and F. Sau, “Symmetric inclusion process with
slow boundary: Hydrodynamics and hydrostatics,” Bernoulli, vol. 28, no.
2. Bernoulli Society for Mathematical Statistics and Probability, pp. 1340–1381,
2022.'
ista: 'Franceschini C, Gonçalves P, Sau F. 2022. Symmetric inclusion process with
slow boundary: Hydrodynamics and hydrostatics. Bernoulli. 28(2), 1340–1381.'
mla: 'Franceschini, Chiara, et al. “Symmetric Inclusion Process with Slow Boundary:
Hydrodynamics and Hydrostatics.” Bernoulli, vol. 28, no. 2, Bernoulli Society
for Mathematical Statistics and Probability, 2022, pp. 1340–81, doi:10.3150/21-bej1390.'
short: C. Franceschini, P. Gonçalves, F. Sau, Bernoulli 28 (2022) 1340–1381.
date_created: 2023-01-16T10:03:04Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2025-04-14T07:44:00Z
day: '01'
department:
- _id: JaMa
doi: 10.3150/21-bej1390
ec_funded: 1
external_id:
arxiv:
- '2007.11998'
isi:
- '000766619100025'
intvolume: ' 28'
isi: 1
issue: '2'
keyword:
- Statistics and Probability
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2007.11998
month: '05'
oa: 1
oa_version: Preprint
page: 1340-1381
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Bernoulli
publication_identifier:
issn:
- 1350-7265
publication_status: published
publisher: Bernoulli Society for Mathematical Statistics and Probability
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Symmetric inclusion process with slow boundary: Hydrodynamics and hydrostatics'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 28
year: '2022'
...
---
_id: '12282'
abstract:
- lang: eng
text: From a simple thought to a multicellular movement
acknowledgement: The authors want to thank Professors Carrie Bernecky, Tom Henzinger,
Martin Loose and Gaia Novarino for accepting to be interviewed, thus giving significant
contribution to the discussion that lead to this article.
article_number: '260017'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Nicole
full_name: Amberg, Nicole
id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
last_name: Amberg
orcid: 0000-0002-3183-8207
- first_name: Melissa A
full_name: Stouffer, Melissa A
id: 4C9372C4-F248-11E8-B48F-1D18A9856A87
last_name: Stouffer
- first_name: Irene
full_name: Vercellino, Irene
id: 3ED6AF16-F248-11E8-B48F-1D18A9856A87
last_name: Vercellino
orcid: 0000-0001-5618-3449
citation:
ama: Amberg N, Stouffer MA, Vercellino I. Operation STEM fatale – how an equity,
diversity and inclusion initiative has brought us to reflect on the current challenges
in cell biology and science as a whole. Journal of Cell Science. 2022;135(8).
doi:10.1242/jcs.260017
apa: Amberg, N., Stouffer, M. A., & Vercellino, I. (2022). Operation STEM fatale
– how an equity, diversity and inclusion initiative has brought us to reflect
on the current challenges in cell biology and science as a whole. Journal of
Cell Science. The Company of Biologists. https://doi.org/10.1242/jcs.260017
chicago: Amberg, Nicole, Melissa A Stouffer, and Irene Vercellino. “Operation STEM
Fatale – How an Equity, Diversity and Inclusion Initiative Has Brought Us to Reflect
on the Current Challenges in Cell Biology and Science as a Whole.” Journal
of Cell Science. The Company of Biologists, 2022. https://doi.org/10.1242/jcs.260017.
ieee: N. Amberg, M. A. Stouffer, and I. Vercellino, “Operation STEM fatale – how
an equity, diversity and inclusion initiative has brought us to reflect on the
current challenges in cell biology and science as a whole,” Journal of Cell
Science, vol. 135, no. 8. The Company of Biologists, 2022.
ista: Amberg N, Stouffer MA, Vercellino I. 2022. Operation STEM fatale – how an
equity, diversity and inclusion initiative has brought us to reflect on the current
challenges in cell biology and science as a whole. Journal of Cell Science. 135(8),
260017.
mla: Amberg, Nicole, et al. “Operation STEM Fatale – How an Equity, Diversity and
Inclusion Initiative Has Brought Us to Reflect on the Current Challenges in Cell
Biology and Science as a Whole.” Journal of Cell Science, vol. 135, no.
8, 260017, The Company of Biologists, 2022, doi:10.1242/jcs.260017.
short: N. Amberg, M.A. Stouffer, I. Vercellino, Journal of Cell Science 135 (2022).
corr_author: '1'
date_created: 2023-01-16T10:03:14Z
date_published: 2022-04-19T00:00:00Z
date_updated: 2024-10-09T21:03:55Z
day: '19'
department:
- _id: SiHi
- _id: LeSa
doi: 10.1242/jcs.260017
external_id:
isi:
- '000798123600015'
pmid:
- '35438168'
intvolume: ' 135'
isi: 1
issue: '8'
language:
- iso: eng
month: '04'
oa_version: None
pmid: 1
publication: Journal of Cell Science
publication_identifier:
eissn:
- 1477-9137
issn:
- 0021-9533
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Operation STEM fatale – how an equity, diversity and inclusion initiative has
brought us to reflect on the current challenges in cell biology and science as a
whole
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 135
year: '2022'
...
---
_id: '12283'
abstract:
- lang: eng
text: Neurons extend axons to form the complex circuitry of the mature brain. This
depends on the coordinated response and continuous remodelling of the microtubule
and F-actin networks in the axonal growth cone. Growth cone architecture remains
poorly understood at nanoscales. We therefore investigated mouse hippocampal neuron
growth cones using cryo-electron tomography to directly visualise their three-dimensional
subcellular architecture with molecular detail. Our data showed that the hexagonal
arrays of actin bundles that form filopodia penetrate and terminate deep within
the growth cone interior. We directly observed the modulation of these and other
growth cone actin bundles by alteration of individual F-actin helical structures.
Microtubules with blunt, slightly flared or gently curved ends predominated in
the growth cone, frequently contained lumenal particles and exhibited lattice
defects. Investigation of the effect of absence of doublecortin, a neurodevelopmental
cytoskeleton regulator, on growth cone cytoskeleton showed no major anomalies
in overall growth cone organisation or in F-actin subpopulations. However, our
data suggested that microtubules sustained more structural defects, highlighting
the importance of microtubule integrity during growth cone migration.
acknowledgement: "J.A. was supported by a grant from the Medical Research Council
(MRC), UK (MR/R000352/1) to C.A.M. Cryo-EM data were collected on equipment funded
by the Wellcome Trust, UK (079605/Z/06/Z) and the Biotechnology and Biological Sciences
Research Council (BBSRC) UK (BB/L014211/1). F.F.’s salary and institute were supported
by Inserm (Institut National de la Santé et de la Recherche Médicale), CNRS (Centre
National de la Recherche Scientifique) and Sorbonne Université. F.F.’s group was
particularly supported by Agence Nationale de la\r\nRecherche (ANR-16-CE16-0011-03)
and Seventh Framework Programme (EUHEALTH-\r\n2013, DESIRE, N° 60253; also funding
M.S.’s salary) and the European Cooperation in Science and Technology (COST Action
CA16118). Open Access funding provided by Birkbeck College: Birkbeck University
of London. Deposited in PMC for immediate release."
article_number: '259234'
article_processing_charge: No
article_type: original
author:
- first_name: Joseph
full_name: Atherton, Joseph
last_name: Atherton
- first_name: Melissa A
full_name: Stouffer, Melissa A
id: 4C9372C4-F248-11E8-B48F-1D18A9856A87
last_name: Stouffer
- first_name: Fiona
full_name: Francis, Fiona
last_name: Francis
- first_name: Carolyn A.
full_name: Moores, Carolyn A.
last_name: Moores
citation:
ama: Atherton J, Stouffer MA, Francis F, Moores CA. Visualising the cytoskeletal
machinery in neuronal growth cones using cryo-electron tomography. Journal
of Cell Science. 2022;135(7). doi:10.1242/jcs.259234
apa: Atherton, J., Stouffer, M. A., Francis, F., & Moores, C. A. (2022). Visualising
the cytoskeletal machinery in neuronal growth cones using cryo-electron tomography.
Journal of Cell Science. The Company of Biologists. https://doi.org/10.1242/jcs.259234
chicago: Atherton, Joseph, Melissa A Stouffer, Fiona Francis, and Carolyn A. Moores.
“Visualising the Cytoskeletal Machinery in Neuronal Growth Cones Using Cryo-Electron
Tomography.” Journal of Cell Science. The Company of Biologists, 2022.
https://doi.org/10.1242/jcs.259234.
ieee: J. Atherton, M. A. Stouffer, F. Francis, and C. A. Moores, “Visualising the
cytoskeletal machinery in neuronal growth cones using cryo-electron tomography,”
Journal of Cell Science, vol. 135, no. 7. The Company of Biologists, 2022.
ista: Atherton J, Stouffer MA, Francis F, Moores CA. 2022. Visualising the cytoskeletal
machinery in neuronal growth cones using cryo-electron tomography. Journal of
Cell Science. 135(7), 259234.
mla: Atherton, Joseph, et al. “Visualising the Cytoskeletal Machinery in Neuronal
Growth Cones Using Cryo-Electron Tomography.” Journal of Cell Science,
vol. 135, no. 7, 259234, The Company of Biologists, 2022, doi:10.1242/jcs.259234.
short: J. Atherton, M.A. Stouffer, F. Francis, C.A. Moores, Journal of Cell Science
135 (2022).
date_created: 2023-01-16T10:03:24Z
date_published: 2022-04-01T00:00:00Z
date_updated: 2023-08-04T10:28:34Z
day: '01'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1242/jcs.259234
external_id:
isi:
- '000783840400010'
pmid:
- '35383828'
file:
- access_level: open_access
checksum: 4346ed32cb7c89a8ca051c7da68a9a1c
content_type: application/pdf
creator: dernst
date_created: 2023-01-30T11:41:01Z
date_updated: 2023-01-30T11:41:01Z
file_id: '12461'
file_name: 2022_JourCellBiology_Atherton.pdf
file_size: 13868733
relation: main_file
success: 1
file_date_updated: 2023-01-30T11:41:01Z
has_accepted_license: '1'
intvolume: ' 135'
isi: 1
issue: '7'
keyword:
- Cell Biology
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Science
publication_identifier:
eissn:
- 1477-9137
issn:
- 0021-9533
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Visualising the cytoskeletal machinery in neuronal growth cones using cryo-electron
tomography
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 135
year: '2022'
...
---
_id: '12286'
abstract:
- lang: eng
text: "Inspired by the study of loose cycles in hypergraphs, we define the loose
core in hypergraphs as a structurewhich mirrors the close relationship between
cycles and $2$-cores in graphs. We prove that in the $r$-uniform binomial random
hypergraph $H^r(n,p)$, the order of the loose core undergoes a phase transition
at a certain critical threshold and determine this order, as well as the number
of edges, asymptotically in the subcritical and supercritical regimes.
\r\nOur
main tool is an algorithm called CoreConstruct, which enables us to analyse a
peeling process for the loose core. By analysing this algorithm we determine the
asymptotic degree distribution of vertices in the loose core and in particular
how many vertices and edges the loose core contains. As a corollary we obtain
an improved upper bound on the length of the longest loose cycle in $H^r(n,p)$."
acknowledgement: 'Supported by Austrian Science Fund (FWF): I3747, W1230.'
article_number: P4.13
article_processing_charge: No
article_type: original
author:
- first_name: Oliver
full_name: Cooley, Oliver
id: 43f4ddd0-a46b-11ec-8df6-ef3703bd721d
last_name: Cooley
- first_name: Mihyun
full_name: Kang, Mihyun
last_name: Kang
- first_name: Julian
full_name: Zalla, Julian
last_name: Zalla
citation:
ama: Cooley O, Kang M, Zalla J. Loose cores and cycles in random hypergraphs. The
Electronic Journal of Combinatorics. 2022;29(4). doi:10.37236/10794
apa: Cooley, O., Kang, M., & Zalla, J. (2022). Loose cores and cycles in random
hypergraphs. The Electronic Journal of Combinatorics. The Electronic Journal
of Combinatorics. https://doi.org/10.37236/10794
chicago: Cooley, Oliver, Mihyun Kang, and Julian Zalla. “Loose Cores and Cycles
in Random Hypergraphs.” The Electronic Journal of Combinatorics. The Electronic
Journal of Combinatorics, 2022. https://doi.org/10.37236/10794.
ieee: O. Cooley, M. Kang, and J. Zalla, “Loose cores and cycles in random hypergraphs,”
The Electronic Journal of Combinatorics, vol. 29, no. 4. The Electronic
Journal of Combinatorics, 2022.
ista: Cooley O, Kang M, Zalla J. 2022. Loose cores and cycles in random hypergraphs.
The Electronic Journal of Combinatorics. 29(4), P4.13.
mla: Cooley, Oliver, et al. “Loose Cores and Cycles in Random Hypergraphs.” The
Electronic Journal of Combinatorics, vol. 29, no. 4, P4.13, The Electronic
Journal of Combinatorics, 2022, doi:10.37236/10794.
short: O. Cooley, M. Kang, J. Zalla, The Electronic Journal of Combinatorics 29
(2022).
date_created: 2023-01-16T10:03:57Z
date_published: 2022-10-21T00:00:00Z
date_updated: 2023-08-04T10:29:18Z
day: '21'
ddc:
- '510'
department:
- _id: MaKw
doi: 10.37236/10794
external_id:
isi:
- '000876763300001'
file:
- access_level: open_access
checksum: 00122b2459f09b5ae43073bfba565e94
content_type: application/pdf
creator: dernst
date_created: 2023-01-30T11:45:13Z
date_updated: 2023-01-30T11:45:13Z
file_id: '12462'
file_name: 2022_ElecJournCombinatorics_Cooley_Kang_Zalla.pdf
file_size: 626953
relation: main_file
success: 1
file_date_updated: 2023-01-30T11:45:13Z
has_accepted_license: '1'
intvolume: ' 29'
isi: 1
issue: '4'
keyword:
- Computational Theory and Mathematics
- Geometry and Topology
- Theoretical Computer Science
- Applied Mathematics
- Discrete Mathematics and Combinatorics
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nd/4.0/
month: '10'
oa: 1
oa_version: Published Version
publication: The Electronic Journal of Combinatorics
publication_identifier:
eissn:
- 1077-8926
publication_status: published
publisher: The Electronic Journal of Combinatorics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Loose cores and cycles in random hypergraphs
tmp:
image: /image/cc_by_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nd/4.0/legalcode
name: Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)
short: CC BY-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 29
year: '2022'
...
---
_id: '12288'
abstract:
- lang: eng
text: To understand the function of neuronal circuits, it is crucial to disentangle
the connectivity patterns within the network. However, most tools currently used
to explore connectivity have low throughput, low selectivity, or limited accessibility.
Here, we report the development of an improved packaging system for the production
of the highly neurotropic RVdGenvA-CVS-N2c rabies viral vectors, yielding titers
orders of magnitude higher with no background contamination, at a fraction of
the production time, while preserving the efficiency of transsynaptic labeling.
Along with the production pipeline, we developed suites of ‘starter’ AAV and bicistronic
RVdG-CVS-N2c vectors, enabling retrograde labeling from a wide range of neuronal
populations, tailored for diverse experimental requirements. We demonstrate the
power and flexibility of the new system by uncovering hidden local and distal
inhibitory connections in the mouse hippocampal formation and by imaging the functional
properties of a cortical microcircuit across weeks. Our novel production pipeline
provides a convenient approach to generate new rabies vectors, while our toolkit
flexibly and efficiently expands the current capacity to label, manipulate and
image the neuronal activity of interconnected neuronal circuits in vitro and in
vivo.
acknowledged_ssus:
- _id: Bio
- _id: PreCl
acknowledgement: We thank F Marr for technical assistance, A Murray for RVdG-CVS-N2c
viruses and Neuro2A packaging cell-lines and J Watson for reading the manuscript.
This research was supported by the Scientific Service Units (SSU) of IST-Austria
through resources provided by the Imaging and Optics Facility (IOF) and the Preclinical
Facility (PCF). This project was funded by the European Research Council (ERC) under
the European Union’s Horizon 2020 research and innovation programme (ERC advanced
grant No 692692, PJ, ERC starting grant No 756502, MJ), the Fond zur Förderung der
Wissenschaftlichen Forschung (Z 312-B27, Wittgenstein award, PJ), the Human Frontier
Science Program (LT000256/2018-L, AS) and EMBO (ALTF 1098-2017, AS).
article_number: '79848'
article_processing_charge: No
article_type: original
author:
- first_name: Anton L
full_name: Sumser, Anton L
id: 3320A096-F248-11E8-B48F-1D18A9856A87
last_name: Sumser
orcid: 0000-0002-4792-1881
- first_name: Maximilian A
full_name: Jösch, Maximilian A
id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
last_name: Jösch
orcid: 0000-0002-3937-1330
- first_name: Peter M
full_name: Jonas, Peter M
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
- first_name: Yoav
full_name: Ben Simon, Yoav
id: 43DF3136-F248-11E8-B48F-1D18A9856A87
last_name: Ben Simon
citation:
ama: Sumser AL, Jösch MA, Jonas PM, Ben Simon Y. Fast, high-throughput production
of improved rabies viral vectors for specific, efficient and versatile transsynaptic
retrograde labeling. eLife. 2022;11. doi:10.7554/elife.79848
apa: Sumser, A. L., Jösch, M. A., Jonas, P. M., & Ben Simon, Y. (2022). Fast,
high-throughput production of improved rabies viral vectors for specific, efficient
and versatile transsynaptic retrograde labeling. ELife. eLife Sciences
Publications. https://doi.org/10.7554/elife.79848
chicago: Sumser, Anton L, Maximilian A Jösch, Peter M Jonas, and Yoav Ben Simon.
“Fast, High-Throughput Production of Improved Rabies Viral Vectors for Specific,
Efficient and Versatile Transsynaptic Retrograde Labeling.” ELife. eLife
Sciences Publications, 2022. https://doi.org/10.7554/elife.79848.
ieee: A. L. Sumser, M. A. Jösch, P. M. Jonas, and Y. Ben Simon, “Fast, high-throughput
production of improved rabies viral vectors for specific, efficient and versatile
transsynaptic retrograde labeling,” eLife, vol. 11. eLife Sciences Publications,
2022.
ista: Sumser AL, Jösch MA, Jonas PM, Ben Simon Y. 2022. Fast, high-throughput production
of improved rabies viral vectors for specific, efficient and versatile transsynaptic
retrograde labeling. eLife. 11, 79848.
mla: Sumser, Anton L., et al. “Fast, High-Throughput Production of Improved Rabies
Viral Vectors for Specific, Efficient and Versatile Transsynaptic Retrograde Labeling.”
ELife, vol. 11, 79848, eLife Sciences Publications, 2022, doi:10.7554/elife.79848.
short: A.L. Sumser, M.A. Jösch, P.M. Jonas, Y. Ben Simon, ELife 11 (2022).
corr_author: '1'
date_created: 2023-01-16T10:04:15Z
date_published: 2022-09-15T00:00:00Z
date_updated: 2025-04-15T08:29:05Z
day: '15'
ddc:
- '570'
department:
- _id: MaJö
- _id: PeJo
doi: 10.7554/elife.79848
ec_funded: 1
external_id:
isi:
- '000892204300001'
pmid:
- '36040301'
file:
- access_level: open_access
checksum: 5a2a65e3e7225090c3d8199f3bbd7b7b
content_type: application/pdf
creator: dernst
date_created: 2023-01-30T11:50:53Z
date_updated: 2023-01-30T11:50:53Z
file_id: '12463'
file_name: 2022_eLife_Sumser.pdf
file_size: 8506811
relation: main_file
success: 1
file_date_updated: 2023-01-30T11:50:53Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
keyword:
- General Immunology and Microbiology
- General Biochemistry
- Genetics and Molecular Biology
- General Medicine
- General Neuroscience
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '692692'
name: Biophysics and circuit function of a giant cortical glutamatergic synapse
- _id: 2634E9D2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '756502'
name: Circuits of Visual Attention
- _id: 25C5A090-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00312
name: Synaptic communication in neuronal microcircuits
- _id: 266D407A-B435-11E9-9278-68D0E5697425
grant_number: LT000256
name: Neuronal networks of salience and spatial detection in the murine superior
colliculus
- _id: 264FEA02-B435-11E9-9278-68D0E5697425
grant_number: ALTF 1098-2017
name: Connecting sensory with motor processing in the superior colliculus
publication: eLife
publication_identifier:
eissn:
- 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fast, high-throughput production of improved rabies viral vectors for specific,
efficient and versatile transsynaptic retrograde labeling
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2022'
...
---
_id: '12290'
abstract:
- lang: eng
text: We prove local laws, i.e. optimal concentration estimates for arbitrary products
of resolvents of a Wigner random matrix with deterministic matrices in between.
We find that the size of such products heavily depends on whether some of the
deterministic matrices are traceless. Our estimates correctly account for this
dependence and they hold optimally down to the smallest possible spectral scale.
acknowledgement: L. Erdős was supported by ERC Advanced Grant “RMTBeyond” No. 101020331.
D. Schröder was supported by Dr. Max Rössler, the Walter Haefner Foundation and
the ETH Zürich Foundation.
article_processing_charge: No
article_type: original
author:
- first_name: Giorgio
full_name: Cipolloni, Giorgio
id: 42198EFA-F248-11E8-B48F-1D18A9856A87
last_name: Cipolloni
orcid: 0000-0002-4901-7992
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Dominik J
full_name: Schröder, Dominik J
id: 408ED176-F248-11E8-B48F-1D18A9856A87
last_name: Schröder
orcid: 0000-0002-2904-1856
citation:
ama: Cipolloni G, Erdös L, Schröder DJ. Optimal multi-resolvent local laws for Wigner
matrices. Electronic Journal of Probability. 2022;27:1-38. doi:10.1214/22-ejp838
apa: Cipolloni, G., Erdös, L., & Schröder, D. J. (2022). Optimal multi-resolvent
local laws for Wigner matrices. Electronic Journal of Probability. Institute
of Mathematical Statistics. https://doi.org/10.1214/22-ejp838
chicago: Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Optimal Multi-Resolvent
Local Laws for Wigner Matrices.” Electronic Journal of Probability. Institute
of Mathematical Statistics, 2022. https://doi.org/10.1214/22-ejp838.
ieee: G. Cipolloni, L. Erdös, and D. J. Schröder, “Optimal multi-resolvent local
laws for Wigner matrices,” Electronic Journal of Probability, vol. 27.
Institute of Mathematical Statistics, pp. 1–38, 2022.
ista: Cipolloni G, Erdös L, Schröder DJ. 2022. Optimal multi-resolvent local laws
for Wigner matrices. Electronic Journal of Probability. 27, 1–38.
mla: Cipolloni, Giorgio, et al. “Optimal Multi-Resolvent Local Laws for Wigner Matrices.”
Electronic Journal of Probability, vol. 27, Institute of Mathematical Statistics,
2022, pp. 1–38, doi:10.1214/22-ejp838.
short: G. Cipolloni, L. Erdös, D.J. Schröder, Electronic Journal of Probability
27 (2022) 1–38.
corr_author: '1'
date_created: 2023-01-16T10:04:38Z
date_published: 2022-09-12T00:00:00Z
date_updated: 2025-04-14T07:57:19Z
day: '12'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1214/22-ejp838
ec_funded: 1
external_id:
isi:
- '000910863700003'
file:
- access_level: open_access
checksum: bb647b48fbdb59361210e425c220cdcb
content_type: application/pdf
creator: dernst
date_created: 2023-01-30T11:59:21Z
date_updated: 2023-01-30T11:59:21Z
file_id: '12464'
file_name: 2022_ElecJournProbability_Cipolloni.pdf
file_size: 502149
relation: main_file
success: 1
file_date_updated: 2023-01-30T11:59:21Z
has_accepted_license: '1'
intvolume: ' 27'
isi: 1
keyword:
- Statistics
- Probability and Uncertainty
- Statistics and Probability
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1-38
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
call_identifier: H2020
grant_number: '101020331'
name: Random matrices beyond Wigner-Dyson-Mehta
publication: Electronic Journal of Probability
publication_identifier:
eissn:
- 1083-6489
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimal multi-resolvent local laws for Wigner matrices
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 27
year: '2022'
...
---
_id: '12294'
abstract:
- lang: eng
text: Brassicaceae are blessed with specialized metabolites called glucosinolates
(GSLs), which along with their degradation products, are beneficial in agriculture
and human health. To date, more than 130 GSL structures have been identified,
mostly derived from the amino acid methionine. The biosynthesis of methionine-derived
aliphatic GSLs starts with a side-chain elongation step involving a recursive
three-step cyclic process that incorporates a new methylene group into the 2-oxo
acid to form a series of elongated 2-oxo acids. Methylthioalkylmalate synthase
(MAMS) catalyzes the first committed step in the side-chain elongation of methionine-derived
GSLs. The substrate specificity of MAMS with different 2-oxo acids determines
whether reaction products of a given cycle enter for an additional round of chain
elongation or enter into core GSLs structure formation. Multiple MAMS encoding
genes are present in the Brassicaceae species and are known to play a central
role in shaping the diverse profile of aliphatic GSLs. We recently established
a highly sensitive LC-MS/MS-based methodology that quantifies the MAMS activity
by estimating the amount of the next intermediate of the pathway, the 2-malate
derivatives. Overall, this chapter describes the protocol for the expression,
purification, and steady-state kinetic analysis of the recombinant MAMS protein.
alternative_title:
- Methods in Enzymology
article_processing_charge: No
author:
- first_name: Roshan
full_name: Kumar, Roshan
id: 50e95140-3016-11ec-9e1a-881b648a1367
last_name: Kumar
orcid: 0000-0002-0346-9125
- first_name: Michael
full_name: Reichelt, Michael
last_name: Reichelt
- first_name: Naveen C.
full_name: Bisht, Naveen C.
last_name: Bisht
citation:
ama: 'Kumar R, Reichelt M, Bisht NC. An LC-MS/MS Assay for Enzymatic Characterization
of Methylthioalkylmalate Synthase (MAMS) Involved in Glucosinolate Biosynthesis.
In: Jez J, ed. Biochemical Pathways and Environmental Responses in Plants:
Part A. Vol 676. Elsevier; 2022:49-69. doi:10.1016/bs.mie.2022.07.019'
apa: 'Kumar, R., Reichelt, M., & Bisht, N. C. (2022). An LC-MS/MS Assay for
Enzymatic Characterization of Methylthioalkylmalate Synthase (MAMS) Involved in
Glucosinolate Biosynthesis. In J. Jez (Ed.), Biochemical Pathways and Environmental
Responses in Plants: Part A (Vol. 676, pp. 49–69). Elsevier. https://doi.org/10.1016/bs.mie.2022.07.019'
chicago: 'Kumar, Roshan, Michael Reichelt, and Naveen C. Bisht. “An LC-MS/MS Assay
for Enzymatic Characterization of Methylthioalkylmalate Synthase (MAMS) Involved
in Glucosinolate Biosynthesis.” In Biochemical Pathways and Environmental Responses
in Plants: Part A, edited by Joseph Jez, 676:49–69. Elsevier, 2022. https://doi.org/10.1016/bs.mie.2022.07.019.'
ieee: 'R. Kumar, M. Reichelt, and N. C. Bisht, “An LC-MS/MS Assay for Enzymatic
Characterization of Methylthioalkylmalate Synthase (MAMS) Involved in Glucosinolate
Biosynthesis,” in Biochemical Pathways and Environmental Responses in Plants:
Part A, vol. 676, J. Jez, Ed. Elsevier, 2022, pp. 49–69.'
ista: 'Kumar R, Reichelt M, Bisht NC. 2022.An LC-MS/MS Assay for Enzymatic Characterization
of Methylthioalkylmalate Synthase (MAMS) Involved in Glucosinolate Biosynthesis.
In: Biochemical Pathways and Environmental Responses in Plants: Part A. Methods
in Enzymology, vol. 676, 49–69.'
mla: 'Kumar, Roshan, et al. “An LC-MS/MS Assay for Enzymatic Characterization of
Methylthioalkylmalate Synthase (MAMS) Involved in Glucosinolate Biosynthesis.”
Biochemical Pathways and Environmental Responses in Plants: Part A, edited
by Joseph Jez, vol. 676, Elsevier, 2022, pp. 49–69, doi:10.1016/bs.mie.2022.07.019.'
short: 'R. Kumar, M. Reichelt, N.C. Bisht, in:, J. Jez (Ed.), Biochemical Pathways
and Environmental Responses in Plants: Part A, Elsevier, 2022, pp. 49–69.'
date_created: 2023-01-16T10:05:13Z
date_published: 2022-10-21T00:00:00Z
date_updated: 2025-07-03T14:02:58Z
day: '21'
doi: 10.1016/bs.mie.2022.07.019
editor:
- first_name: Joseph
full_name: Jez, Joseph
last_name: Jez
external_id:
pmid:
- '36280361'
intvolume: ' 676'
language:
- iso: eng
month: '10'
oa_version: None
page: 49-69
pmid: 1
publication: 'Biochemical Pathways and Environmental Responses in Plants: Part A'
publication_identifier:
isbn:
- '9780323955614'
issn:
- 0076-6879
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: An LC-MS/MS Assay for Enzymatic Characterization of Methylthioalkylmalate Synthase
(MAMS) Involved in Glucosinolate Biosynthesis
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 676
year: '2022'
...
---
_id: '12298'
abstract:
- lang: eng
text: 'Existing committee-based Byzantine state machine replication (SMR) protocols,
typically deployed in production blockchains, face a clear trade-off: (1) they
either achieve linear communication cost in the steady state, but sacrifice liveness
during periods of asynchrony, or (2) they are robust (progress with probability
one) but pay quadratic communication cost. We believe this trade-off is unwarranted
since existing linear protocols still have asymptotic quadratic cost in the worst
case. We design Ditto, a Byzantine SMR protocol that enjoys the best of both worlds:
optimal communication on and off the steady state (linear and quadratic, respectively)
and progress guarantee under asynchrony and DDoS attacks. We achieve this by replacing
the view-synchronization of partially synchronous protocols with an asynchronous
fallback mechanism at no extra asymptotic cost. Specifically, we start from HotStuff,
a state-of-the-art linear protocol, and gradually build Ditto. As a separate contribution
and an intermediate step, we design a 2-chain version of HotStuff, Jolteon, which
leverages a quadratic view-change mechanism to reduce the latency of the standard
3-chain HotStuff. We implement and experimentally evaluate all our systems to
prove that breaking the robustness-efficiency trade-off is in the realm of practicality.'
acknowledgement: We thank our shepherd Aniket Kate and the anonymous reviewers at
FC 2022 for their helpful feedback. This work is supported by the Novi team at Facebook.
We also thank the Novi Research and Engineering teams for valuable feedback, and
in particular Mathieu Baudet, Andrey Chursin, George Danezis, Zekun Li, and Dahlia
Malkhi for discussions that shaped this work.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Rati
full_name: Gelashvili, Rati
last_name: Gelashvili
- first_name: Eleftherios
full_name: Kokoris Kogias, Eleftherios
id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
last_name: Kokoris Kogias
- first_name: Alberto
full_name: Sonnino, Alberto
last_name: Sonnino
- first_name: Alexander
full_name: Spiegelman, Alexander
last_name: Spiegelman
- first_name: Zhuolun
full_name: Xiang, Zhuolun
last_name: Xiang
citation:
ama: 'Gelashvili R, Kokoris Kogias E, Sonnino A, Spiegelman A, Xiang Z. Jolteon
and ditto: Network-adaptive efficient consensus with asynchronous fallback. In:
Financial Cryptography and Data Security. Vol 13411. Springer Nature; 2022:296-315.
doi:10.1007/978-3-031-18283-9_14'
apa: 'Gelashvili, R., Kokoris Kogias, E., Sonnino, A., Spiegelman, A., & Xiang,
Z. (2022). Jolteon and ditto: Network-adaptive efficient consensus with asynchronous
fallback. In Financial Cryptography and Data Security (Vol. 13411, pp.
296–315). Radisson Grenada Beach Resort, Grenada: Springer Nature. https://doi.org/10.1007/978-3-031-18283-9_14'
chicago: 'Gelashvili, Rati, Eleftherios Kokoris Kogias, Alberto Sonnino, Alexander
Spiegelman, and Zhuolun Xiang. “Jolteon and Ditto: Network-Adaptive Efficient
Consensus with Asynchronous Fallback.” In Financial Cryptography and Data Security,
13411:296–315. Springer Nature, 2022. https://doi.org/10.1007/978-3-031-18283-9_14.'
ieee: 'R. Gelashvili, E. Kokoris Kogias, A. Sonnino, A. Spiegelman, and Z. Xiang,
“Jolteon and ditto: Network-adaptive efficient consensus with asynchronous fallback,”
in Financial Cryptography and Data Security, Radisson Grenada Beach Resort,
Grenada, 2022, vol. 13411, pp. 296–315.'
ista: 'Gelashvili R, Kokoris Kogias E, Sonnino A, Spiegelman A, Xiang Z. 2022. Jolteon
and ditto: Network-adaptive efficient consensus with asynchronous fallback. Financial
Cryptography and Data Security. FC: Financial Cryptography, LNCS, vol. 13411,
296–315.'
mla: 'Gelashvili, Rati, et al. “Jolteon and Ditto: Network-Adaptive Efficient Consensus
with Asynchronous Fallback.” Financial Cryptography and Data Security,
vol. 13411, Springer Nature, 2022, pp. 296–315, doi:10.1007/978-3-031-18283-9_14.'
short: R. Gelashvili, E. Kokoris Kogias, A. Sonnino, A. Spiegelman, Z. Xiang, in:,
Financial Cryptography and Data Security, Springer Nature, 2022, pp. 296–315.
conference:
end_date: 2022-05-06
location: Radisson Grenada Beach Resort, Grenada
name: 'FC: Financial Cryptography'
start_date: 2022-05-02
date_created: 2023-01-16T10:05:51Z
date_published: 2022-10-22T00:00:00Z
date_updated: 2025-09-10T09:52:23Z
day: '22'
department:
- _id: ElKo
doi: 10.1007/978-3-031-18283-9_14
external_id:
arxiv:
- '2106.10362'
isi:
- '001423640200014'
intvolume: ' 13411'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.2106.10362'
month: '10'
oa: 1
oa_version: Preprint
page: 296-315
publication: Financial Cryptography and Data Security
publication_identifier:
eisbn:
- '9783031182839'
eissn:
- 1611-3349
isbn:
- '9783031182822'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Jolteon and ditto: Network-adaptive efficient consensus with asynchronous
fallback'
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 13411
year: '2022'
...
---
_id: '12300'
abstract:
- lang: eng
text: Distributed Key Generation (DKG) is a technique to bootstrap threshold cryptosystems
without a trusted third party and is a building block to decentralized protocols
such as randomness beacons, threshold signatures, and general multiparty computation.
Until recently, DKG protocols have assumed the synchronous model and thus are
vulnerable when their underlying network assumptions do not hold. The recent advancements
in asynchronous DKG protocols are insufficient as they either have poor efficiency
or limited functionality, resulting in a lack of concrete implementations. In
this paper, we present a simple and concretely efficient asynchronous DKG (ADKG)
protocol. In a network of n nodes, our ADKG protocol can tolerate up to t2022 IEEE Symposium on Security and Privacy.
Institute of Electrical and Electronics Engineers; 2022:2518-2534. doi:10.1109/sp46214.2022.9833584'
apa: 'Das, S., Yurek, T., Xiang, Z., Miller, A., Kokoris Kogias, E., & Ren,
L. (2022). Practical asynchronous distributed key generation. In 2022 IEEE
Symposium on Security and Privacy (pp. 2518–2534). San Francisco, CA, United
States: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/sp46214.2022.9833584'
chicago: Das, Sourav, Thomas Yurek, Zhuolun Xiang, Andrew Miller, Eleftherios Kokoris
Kogias, and Ling Ren. “Practical Asynchronous Distributed Key Generation.” In
2022 IEEE Symposium on Security and Privacy, 2518–34. Institute of Electrical
and Electronics Engineers, 2022. https://doi.org/10.1109/sp46214.2022.9833584.
ieee: S. Das, T. Yurek, Z. Xiang, A. Miller, E. Kokoris Kogias, and L. Ren, “Practical
asynchronous distributed key generation,” in 2022 IEEE Symposium on Security
and Privacy, San Francisco, CA, United States, 2022, pp. 2518–2534.
ista: 'Das S, Yurek T, Xiang Z, Miller A, Kokoris Kogias E, Ren L. 2022. Practical
asynchronous distributed key generation. 2022 IEEE Symposium on Security and Privacy.
SP: Symposium on Security and Privacy, 2518–2534.'
mla: Das, Sourav, et al. “Practical Asynchronous Distributed Key Generation.” 2022
IEEE Symposium on Security and Privacy, Institute of Electrical and Electronics
Engineers, 2022, pp. 2518–34, doi:10.1109/sp46214.2022.9833584.
short: S. Das, T. Yurek, Z. Xiang, A. Miller, E. Kokoris Kogias, L. Ren, in:, 2022
IEEE Symposium on Security and Privacy, Institute of Electrical and Electronics
Engineers, 2022, pp. 2518–2534.
conference:
end_date: 2022-05-26
location: San Francisco, CA, United States
name: 'SP: Symposium on Security and Privacy'
start_date: 2022-05-23
date_created: 2023-01-16T10:06:11Z
date_published: 2022-07-27T00:00:00Z
date_updated: 2023-02-16T07:43:53Z
day: '27'
department:
- _id: ElKo
doi: 10.1109/sp46214.2022.9833584
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2021/1591
month: '07'
oa: 1
oa_version: Preprint
page: 2518-2534
publication: 2022 IEEE Symposium on Security and Privacy
publication_identifier:
eisbn:
- '9781665413169'
eissn:
- 2375-1207
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Practical asynchronous distributed key generation
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '12302'
abstract:
- lang: eng
text: 'We propose a novel algorithm to decide the language inclusion between (nondeterministic)
Büchi automata, a PSPACE-complete problem. Our approach, like others before, leverage
a notion of quasiorder to prune the search for a counterexample by discarding
candidates which are subsumed by others for the quasiorder. Discarded candidates
are guaranteed to not compromise the completeness of the algorithm. The novelty
of our work lies in the quasiorder used to discard candidates. We introduce FORQs
(family of right quasiorders) that we obtain by adapting the notion of family
of right congruences put forward by Maler and Staiger in 1993. We define a FORQ-based
inclusion algorithm which we prove correct and instantiate it for a specific FORQ,
called the structural FORQ, induced by the Büchi automaton to the right of the
inclusion sign. The resulting implementation, called FORKLIFT, scales up better
than the state-of-the-art on a variety of benchmarks including benchmarks from
program verification and theorem proving for word combinatorics. Artifact: https://doi.org/10.5281/zenodo.6552870'
acknowledgement: This work was partially funded by the ESF Investing in your future,
the Madrid regional project S2018/TCS-4339 BLOQUES, the Spanish project PGC2018-102210-B-I00
BOSCO, the Ramón y Cajal fellowship RYC-2016-20281, and the ERC grant PR1001ERC02.
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Kyveli
full_name: Doveri, Kyveli
last_name: Doveri
- first_name: Pierre
full_name: Ganty, Pierre
last_name: Ganty
- first_name: Nicolas Adrien
full_name: Mazzocchi, Nicolas Adrien
id: b26baa86-3308-11ec-87b0-8990f34baa85
last_name: Mazzocchi
citation:
ama: 'Doveri K, Ganty P, Mazzocchi NA. FORQ-based language inclusion formal testing.
In: Computer Aided Verification. Vol 13372. Springer Nature; 2022:109-129.
doi:10.1007/978-3-031-13188-2_6'
apa: 'Doveri, K., Ganty, P., & Mazzocchi, N. A. (2022). FORQ-based language
inclusion formal testing. In Computer Aided Verification (Vol. 13372, pp.
109–129). Haifa, Israel: Springer Nature. https://doi.org/10.1007/978-3-031-13188-2_6'
chicago: Doveri, Kyveli, Pierre Ganty, and Nicolas Adrien Mazzocchi. “FORQ-Based
Language Inclusion Formal Testing.” In Computer Aided Verification, 13372:109–29.
Springer Nature, 2022. https://doi.org/10.1007/978-3-031-13188-2_6.
ieee: K. Doveri, P. Ganty, and N. A. Mazzocchi, “FORQ-based language inclusion formal
testing,” in Computer Aided Verification, Haifa, Israel, 2022, vol. 13372,
pp. 109–129.
ista: 'Doveri K, Ganty P, Mazzocchi NA. 2022. FORQ-based language inclusion formal
testing. Computer Aided Verification. CAV: Computer Aided Verification, LNCS,
vol. 13372, 109–129.'
mla: Doveri, Kyveli, et al. “FORQ-Based Language Inclusion Formal Testing.” Computer
Aided Verification, vol. 13372, Springer Nature, 2022, pp. 109–29, doi:10.1007/978-3-031-13188-2_6.
short: K. Doveri, P. Ganty, N.A. Mazzocchi, in:, Computer Aided Verification, Springer
Nature, 2022, pp. 109–129.
conference:
end_date: 2022-08-10
location: Haifa, Israel
name: 'CAV: Computer Aided Verification'
start_date: 2022-08-07
date_created: 2023-01-16T10:06:31Z
date_published: 2022-08-06T00:00:00Z
date_updated: 2025-04-14T07:55:56Z
day: '06'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-031-13188-2_6
ec_funded: 1
external_id:
arxiv:
- '2207.13549'
isi:
- '000870310500006'
file:
- access_level: open_access
checksum: edc363b1be5447a09063e115c247918a
content_type: application/pdf
creator: dernst
date_created: 2023-01-30T12:51:02Z
date_updated: 2023-01-30T12:51:02Z
file_id: '12465'
file_name: 2022_LNCS_Doveri.pdf
file_size: 497682
relation: main_file
success: 1
file_date_updated: 2023-01-30T12:51:02Z
has_accepted_license: '1'
intvolume: ' 13372'
isi: 1
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 109-129
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
call_identifier: H2020
grant_number: '101020093'
name: Vigilant Algorithmic Monitoring of Software
publication: Computer Aided Verification
publication_identifier:
eisbn:
- '9783031131882'
eissn:
- 1611-3349
isbn:
- '9783031131875'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: FORQ-based language inclusion formal testing
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 13372
year: '2022'
...
---
_id: '12303'
abstract:
- lang: eng
text: We construct for each choice of a quiver Q, a cohomology theory A, and a poset
P a “loop Grassmannian” GP(Q,A). This generalizes loop Grassmannians of semisimple
groups and the loop Grassmannians of based quadratic forms. The addition of a
“dilation” torus D⊆G2m gives a quantization GPD(Q,A). This construction is motivated
by the program of introducing an inner cohomology theory in algebraic geometry
adequate for the Geometric Langlands program (Mirković, Some extensions of the
notion of loop Grassmannians. Rad Hrvat. Akad. Znan. Umjet. Mat. Znan., the Mardešić
issue. No. 532, 53–74, 2017) and on the construction of affine quantum groups
from generalized cohomology theories (Yang and Zhao, Quiver varieties and elliptic
quantum groups, preprint. arxiv1708.01418).
acknowledgement: I.M. thanks Zhijie Dong for long-term discussions on the material
that entered this work. We thank Misha Finkelberg for pointing out errors in earlier
versions. His advice and his insistence have led to a much better paper. A part
of the writing was done at the conference at IST (Vienna) attended by all coauthors.
We therefore thank the organizers of the conference and the support of ERC Advanced
Grant Arithmetic and Physics of Higgs moduli spaces No. 320593. The work of I.M.
was partially supported by NSF grants. The work of Y.Y. was partially supported
by the Australian Research Council (ARC) via the award DE190101231. The work of
G.Z. was partially supported by ARC via the award DE190101222.
alternative_title:
- Trends in Mathematics
article_processing_charge: No
arxiv: 1
author:
- first_name: Ivan
full_name: Mirković, Ivan
last_name: Mirković
- first_name: Yaping
full_name: Yang, Yaping
last_name: Yang
- first_name: Gufang
full_name: Zhao, Gufang
id: 2BC2AC5E-F248-11E8-B48F-1D18A9856A87
last_name: Zhao
citation:
ama: 'Mirković I, Yang Y, Zhao G. Loop Grassmannians of Quivers and Affine Quantum
Groups. In: Baranovskky V, Guay N, Schedler T, eds. Representation Theory and
Algebraic Geometry. 1st ed. TM. Cham: Springer Nature; Birkhäuser; 2022:347-392.
doi:10.1007/978-3-030-82007-7_8'
apa: 'Mirković, I., Yang, Y., & Zhao, G. (2022). Loop Grassmannians of Quivers
and Affine Quantum Groups. In V. Baranovskky, N. Guay, & T. Schedler (Eds.),
Representation Theory and Algebraic Geometry (1st ed., pp. 347–392). Cham:
Springer Nature; Birkhäuser. https://doi.org/10.1007/978-3-030-82007-7_8'
chicago: 'Mirković, Ivan, Yaping Yang, and Gufang Zhao. “Loop Grassmannians of Quivers
and Affine Quantum Groups.” In Representation Theory and Algebraic Geometry,
edited by Vladimir Baranovskky, Nicolas Guay, and Travis Schedler, 1st ed., 347–92.
TM. Cham: Springer Nature; Birkhäuser, 2022. https://doi.org/10.1007/978-3-030-82007-7_8.'
ieee: 'I. Mirković, Y. Yang, and G. Zhao, “Loop Grassmannians of Quivers and Affine
Quantum Groups,” in Representation Theory and Algebraic Geometry, 1st ed.,
V. Baranovskky, N. Guay, and T. Schedler, Eds. Cham: Springer Nature; Birkhäuser,
2022, pp. 347–392.'
ista: 'Mirković I, Yang Y, Zhao G. 2022.Loop Grassmannians of Quivers and Affine
Quantum Groups. In: Representation Theory and Algebraic Geometry. Trends in Mathematics,
, 347–392.'
mla: Mirković, Ivan, et al. “Loop Grassmannians of Quivers and Affine Quantum Groups.”
Representation Theory and Algebraic Geometry, edited by Vladimir Baranovskky
et al., 1st ed., Springer Nature; Birkhäuser, 2022, pp. 347–92, doi:10.1007/978-3-030-82007-7_8.
short: I. Mirković, Y. Yang, G. Zhao, in:, V. Baranovskky, N. Guay, T. Schedler
(Eds.), Representation Theory and Algebraic Geometry, 1st ed., Springer Nature;
Birkhäuser, Cham, 2022, pp. 347–392.
date_created: 2023-01-16T10:06:41Z
date_published: 2022-06-16T00:00:00Z
date_updated: 2025-04-14T09:12:46Z
day: '16'
department:
- _id: TaHa
doi: 10.1007/978-3-030-82007-7_8
ec_funded: 1
edition: '1'
editor:
- first_name: Vladimir
full_name: Baranovskky, Vladimir
last_name: Baranovskky
- first_name: Nicolas
full_name: Guay, Nicolas
last_name: Guay
- first_name: Travis
full_name: Schedler, Travis
last_name: Schedler
external_id:
arxiv:
- '1810.10095'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.1810.10095
month: '06'
oa: 1
oa_version: Preprint
page: 347-392
place: Cham
project:
- _id: 25E549F4-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '320593'
name: Arithmetic and physics of Higgs moduli spaces
publication: Representation Theory and Algebraic Geometry
publication_identifier:
eisbn:
- '9783030820077'
eissn:
- 2297-024X
isbn:
- '9783030820060'
issn:
- 2297-0215
publication_status: published
publisher: Springer Nature; Birkhäuser
quality_controlled: '1'
scopus_import: '1'
series_title: TM
status: public
title: Loop Grassmannians of Quivers and Affine Quantum Groups
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '12304'
abstract:
- lang: eng
text: 'We establish sharp criteria for the instantaneous propagation of free boundaries
in solutions to the thin-film equation. The criteria are formulated in terms of
the initial distribution of mass (as opposed to previous almost-optimal results),
reflecting the fact that mass is a locally conserved quantity for the thin-film
equation. In the regime of weak slippage, our criteria are at the same time necessary
and sufficient. The proof of our upper bounds on free boundary propagation is
based on a strategy of “propagation of degeneracy” down to arbitrarily small spatial
scales: We combine estimates on the local mass and estimates on energies to show
that “degeneracy” on a certain space-time cylinder entails “degeneracy” on a spatially
smaller space-time cylinder with the same time horizon. The derivation of our
lower bounds on free boundary propagation is based on a combination of a monotone
quantity and almost optimal estimates established previously by the second author
with a new estimate connecting motion of mass to entropy production.'
acknowledgement: N. De Nitti acknowledges the kind hospitality of IST Austria within
the framework of the ISTernship Summer Program 2018, during which most of the present
article was written. N. DeNitti has received funding by The Austrian Agency for
International Cooperation in Education &Research (OeAD-GmbH) via its financial support
of the ISTernship Summer Program 2018. N.De Nitti would also like to thank Giuseppe
Coclite, Giuseppe Devillanova, Giuseppe Florio, Sebastian Hensel, and Francesco
Maddalena for several helpful conversations on topics related to this work.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nicola
full_name: De Nitti, Nicola
last_name: De Nitti
- first_name: Julian L
full_name: Fischer, Julian L
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
citation:
ama: De Nitti N, Fischer JL. Sharp criteria for the waiting time phenomenon in solutions
to the thin-film equation. Communications in Partial Differential Equations.
2022;47(7):1394-1434. doi:10.1080/03605302.2022.2056702
apa: De Nitti, N., & Fischer, J. L. (2022). Sharp criteria for the waiting time
phenomenon in solutions to the thin-film equation. Communications in Partial
Differential Equations. Taylor & Francis. https://doi.org/10.1080/03605302.2022.2056702
chicago: De Nitti, Nicola, and Julian L Fischer. “Sharp Criteria for the Waiting
Time Phenomenon in Solutions to the Thin-Film Equation.” Communications in
Partial Differential Equations. Taylor & Francis, 2022. https://doi.org/10.1080/03605302.2022.2056702.
ieee: N. De Nitti and J. L. Fischer, “Sharp criteria for the waiting time phenomenon
in solutions to the thin-film equation,” Communications in Partial Differential
Equations, vol. 47, no. 7. Taylor & Francis, pp. 1394–1434, 2022.
ista: De Nitti N, Fischer JL. 2022. Sharp criteria for the waiting time phenomenon
in solutions to the thin-film equation. Communications in Partial Differential
Equations. 47(7), 1394–1434.
mla: De Nitti, Nicola, and Julian L. Fischer. “Sharp Criteria for the Waiting Time
Phenomenon in Solutions to the Thin-Film Equation.” Communications in Partial
Differential Equations, vol. 47, no. 7, Taylor & Francis, 2022, pp. 1394–434,
doi:10.1080/03605302.2022.2056702.
short: N. De Nitti, J.L. Fischer, Communications in Partial Differential Equations
47 (2022) 1394–1434.
corr_author: '1'
date_created: 2023-01-16T10:06:50Z
date_published: 2022-07-01T00:00:00Z
date_updated: 2024-10-09T21:03:57Z
day: '01'
department:
- _id: JuFi
doi: 10.1080/03605302.2022.2056702
external_id:
arxiv:
- '1907.05342'
isi:
- '000805689800001'
intvolume: ' 47'
isi: 1
issue: '7'
keyword:
- Applied Mathematics
- Analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.1907.05342'
month: '07'
oa: 1
oa_version: Preprint
page: 1394-1434
publication: Communications in Partial Differential Equations
publication_identifier:
eissn:
- 1532-4133
issn:
- 0360-5302
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sharp criteria for the waiting time phenomenon in solutions to the thin-film
equation
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 47
year: '2022'
...
---
_id: '12305'
abstract:
- lang: eng
text: This paper is concerned with the sharp interface limit for the Allen--Cahn
equation with a nonlinear Robin boundary condition in a bounded smooth domain
Ω⊂\R2. We assume that a diffuse interface already has developed and that it is
in contact with the boundary ∂Ω. The boundary condition is designed in such a
way that the limit problem is given by the mean curvature flow with constant α-contact
angle. For α close to 90° we prove a local in time convergence result for well-prepared
initial data for times when a smooth solution to the limit problem exists. Based
on the latter we construct a suitable curvilinear coordinate system and carry
out a rigorous asymptotic expansion for the Allen--Cahn equation with the nonlinear
Robin boundary condition. Moreover, we show a spectral estimate for the corresponding
linearized Allen--Cahn operator and with its aid we derive strong norm estimates
for the difference of the exact and approximate solutions using a Gronwall-type
argument.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Helmut
full_name: Abels, Helmut
last_name: Abels
- first_name: Maximilian
full_name: Moser, Maximilian
id: a60047a9-da77-11eb-85b4-c4dc385ebb8c
last_name: Moser
citation:
ama: Abels H, Moser M. Convergence of the Allen--Cahn equation with a nonlinear
Robin boundary condition to mean curvature flow with contact angle close to 90°.
SIAM Journal on Mathematical Analysis. 2022;54(1):114-172. doi:10.1137/21m1424925
apa: Abels, H., & Moser, M. (2022). Convergence of the Allen--Cahn equation
with a nonlinear Robin boundary condition to mean curvature flow with contact
angle close to 90°. SIAM Journal on Mathematical Analysis. Society for
Industrial and Applied Mathematics. https://doi.org/10.1137/21m1424925
chicago: Abels, Helmut, and Maximilian Moser. “Convergence of the Allen--Cahn Equation
with a Nonlinear Robin Boundary Condition to Mean Curvature Flow with Contact
Angle Close to 90°.” SIAM Journal on Mathematical Analysis. Society for
Industrial and Applied Mathematics, 2022. https://doi.org/10.1137/21m1424925.
ieee: H. Abels and M. Moser, “Convergence of the Allen--Cahn equation with a nonlinear
Robin boundary condition to mean curvature flow with contact angle close to 90°,”
SIAM Journal on Mathematical Analysis, vol. 54, no. 1. Society for Industrial
and Applied Mathematics, pp. 114–172, 2022.
ista: Abels H, Moser M. 2022. Convergence of the Allen--Cahn equation with a nonlinear
Robin boundary condition to mean curvature flow with contact angle close to 90°.
SIAM Journal on Mathematical Analysis. 54(1), 114–172.
mla: Abels, Helmut, and Maximilian Moser. “Convergence of the Allen--Cahn Equation
with a Nonlinear Robin Boundary Condition to Mean Curvature Flow with Contact
Angle Close to 90°.” SIAM Journal on Mathematical Analysis, vol. 54, no.
1, Society for Industrial and Applied Mathematics, 2022, pp. 114–72, doi:10.1137/21m1424925.
short: H. Abels, M. Moser, SIAM Journal on Mathematical Analysis 54 (2022) 114–172.
corr_author: '1'
date_created: 2023-01-16T10:07:00Z
date_published: 2022-01-04T00:00:00Z
date_updated: 2024-10-09T21:03:58Z
day: '04'
department:
- _id: JuFi
doi: 10.1137/21m1424925
external_id:
arxiv:
- '2105.08434'
isi:
- '000762768000004'
intvolume: ' 54'
isi: 1
issue: '1'
keyword:
- Applied Mathematics
- Computational Mathematics
- Analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.2105.08434'
month: '01'
oa: 1
oa_version: Preprint
page: 114-172
publication: SIAM Journal on Mathematical Analysis
publication_identifier:
eissn:
- 1095-7154
issn:
- 0036-1410
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Convergence of the Allen--Cahn equation with a nonlinear Robin boundary condition
to mean curvature flow with contact angle close to 90°
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 54
year: '2022'
...
---
_id: '12307'
abstract:
- lang: eng
text: Point-set topology is among the most abstract branches of mathematics in that
it lacks tangible notions of distance, length, magnitude, order, and size. There
is no shape, no geometry, no algebra, and no direction. Everything we are used
to visualizing is gone. In the teaching and learning of mathematics, this can
present a conundrum. Yet, this very property makes point set topology perfect
for teaching and learning abstract mathematical concepts. It clears our minds
of preconceived intuitions and expectations and forces us to think in new and
creative ways. In this paper, we present guided investigations into topology through
questions and thinking strategies that open up fascinating problems. They are
intended for faculty who already teach or are thinking about teaching a class
in topology or abstract mathematical reasoning for undergraduates. They can be
used to build simple to challenging projects in topology, proofs, honors programs,
and research experiences.
article_processing_charge: No
article_type: original
author:
- first_name: Barbara A.
full_name: Shipman, Barbara A.
last_name: Shipman
- first_name: Elizabeth R
full_name: Stephenson, Elizabeth R
id: 2D04F932-F248-11E8-B48F-1D18A9856A87
last_name: Stephenson
orcid: 0000-0002-6862-208X
citation:
ama: Shipman BA, Stephenson ER. Tangible topology through the lens of limits. PRIMUS.
2022;32(5):593-609. doi:10.1080/10511970.2021.1872750
apa: Shipman, B. A., & Stephenson, E. R. (2022). Tangible topology through the
lens of limits. PRIMUS. Taylor & Francis. https://doi.org/10.1080/10511970.2021.1872750
chicago: Shipman, Barbara A., and Elizabeth R Stephenson. “Tangible Topology through
the Lens of Limits.” PRIMUS. Taylor & Francis, 2022. https://doi.org/10.1080/10511970.2021.1872750.
ieee: B. A. Shipman and E. R. Stephenson, “Tangible topology through the lens of
limits,” PRIMUS, vol. 32, no. 5. Taylor & Francis, pp. 593–609, 2022.
ista: Shipman BA, Stephenson ER. 2022. Tangible topology through the lens of limits.
PRIMUS. 32(5), 593–609.
mla: Shipman, Barbara A., and Elizabeth R. Stephenson. “Tangible Topology through
the Lens of Limits.” PRIMUS, vol. 32, no. 5, Taylor & Francis, 2022,
pp. 593–609, doi:10.1080/10511970.2021.1872750.
short: B.A. Shipman, E.R. Stephenson, PRIMUS 32 (2022) 593–609.
corr_author: '1'
date_created: 2023-01-16T10:07:21Z
date_published: 2022-05-28T00:00:00Z
date_updated: 2024-10-09T21:03:58Z
day: '28'
department:
- _id: HeEd
- _id: GradSch
doi: 10.1080/10511970.2021.1872750
intvolume: ' 32'
issue: '5'
keyword:
- Education
- General Mathematics
language:
- iso: eng
month: '05'
oa_version: None
page: 593-609
publication: PRIMUS
publication_identifier:
eissn:
- 1935-4053
issn:
- 1051-1970
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tangible topology through the lens of limits
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2022'
...
---
_id: '12332'
abstract:
- lang: eng
text: Activity of sensory neurons is driven not only by external stimuli but also
by feedback signals from higher brain areas. Attention is one particularly important
internal signal whose presumed role is to modulate sensory representations such
that they only encode information currently relevant to the organism at minimal
cost. This hypothesis has, however, not yet been expressed in a normative computational
framework. Here, by building on normative principles of probabilistic inference
and efficient coding, we developed a model of dynamic population coding in the
visual cortex. By continuously adapting the sensory code to changing demands of
the perceptual observer, an attention-like modulation emerges. This modulation
can dramatically reduce the amount of neural activity without deteriorating the
accuracy of task-specific inferences. Our results suggest that a range of seemingly
disparate cortical phenomena such as intrinsic gain modulation, attention-related
tuning modulation, and response variability could be manifestations of the same
underlying principles, which combine efficient sensory coding with optimal probabilistic
inference in dynamic environments.
acknowledgement: "We thank Robbe Goris for generously providing figures from his work
and Ann M. Hermundstad for helpful discussions.\r\nGT & WM were supported by the
Austrian Science Fund Standalone Grant P 34015 \"Efficient Coding with Biophysical
Realism\" (https://pf.fwf.ac.at/) WM was additionally supported by the European
Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
Grant Agreement No. 754411 (https://ec.europa.eu/research/mariecurieactions/). The
funders had no role in study design, data collection and analysis, decision to publish,
or preparation of the manuscript."
article_processing_charge: No
article_type: original
author:
- first_name: Wiktor F
full_name: Mlynarski, Wiktor F
id: 358A453A-F248-11E8-B48F-1D18A9856A87
last_name: Mlynarski
- first_name: Gašper
full_name: Tkačik, Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: '1'
citation:
ama: Mlynarski WF, Tkačik G. Efficient coding theory of dynamic attentional modulation.
PLoS Biology. 2022;20(12):e3001889. doi:10.1371/journal.pbio.3001889
apa: Mlynarski, W. F., & Tkačik, G. (2022). Efficient coding theory of dynamic
attentional modulation. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.3001889
chicago: Mlynarski, Wiktor F, and Gašper Tkačik. “Efficient Coding Theory of Dynamic
Attentional Modulation.” PLoS Biology. Public Library of Science, 2022.
https://doi.org/10.1371/journal.pbio.3001889.
ieee: W. F. Mlynarski and G. Tkačik, “Efficient coding theory of dynamic attentional
modulation,” PLoS Biology, vol. 20, no. 12. Public Library of Science,
p. e3001889, 2022.
ista: Mlynarski WF, Tkačik G. 2022. Efficient coding theory of dynamic attentional
modulation. PLoS Biology. 20(12), e3001889.
mla: Mlynarski, Wiktor F., and Gašper Tkačik. “Efficient Coding Theory of Dynamic
Attentional Modulation.” PLoS Biology, vol. 20, no. 12, Public Library
of Science, 2022, p. e3001889, doi:10.1371/journal.pbio.3001889.
short: W.F. Mlynarski, G. Tkačik, PLoS Biology 20 (2022) e3001889.
corr_author: '1'
date_created: 2023-01-22T23:00:55Z
date_published: 2022-12-21T00:00:00Z
date_updated: 2025-06-11T13:57:01Z
day: '21'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.1371/journal.pbio.3001889
ec_funded: 1
external_id:
isi:
- '000925192000001'
pmid:
- '36542662'
file:
- access_level: open_access
checksum: 5d7f1111a87e5f2c1bf92f8886738894
content_type: application/pdf
creator: dernst
date_created: 2023-01-23T08:46:40Z
date_updated: 2023-01-23T08:46:40Z
file_id: '12337'
file_name: 2022_PloSBiology_Mlynarski.pdf
file_size: 4248838
relation: main_file
success: 1
file_date_updated: 2023-01-23T08:46:40Z
has_accepted_license: '1'
intvolume: ' 20'
isi: 1
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: e3001889
pmid: 1
project:
- _id: 626c45b5-2b32-11ec-9570-e509828c1ba6
grant_number: P34015
name: Efficient coding with biophysical realism
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: PLoS Biology
publication_identifier:
eissn:
- 1545-7885
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficient coding theory of dynamic attentional modulation
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 20
year: '2022'
...
---
_id: '12333'
abstract:
- lang: eng
text: Together, copy-number and point mutations form the basis for most evolutionary
novelty, through the process of gene duplication and divergence. While a plethora
of genomic data reveals the long-term fate of diverging coding sequences and their
cis-regulatory elements, little is known about the early dynamics around the duplication
event itself. In microorganisms, selection for increased gene expression often
drives the expansion of gene copy-number mutations, which serves as a crude adaptation,
prior to divergence through refining point mutations. Using a simple synthetic
genetic reporter system that can distinguish between copy-number and point mutations,
we study their early and transient adaptive dynamics in real time in Escherichia
coli. We find two qualitatively different routes of adaptation, depending on the
level of functional improvement needed. In conditions of high gene expression
demand, the two mutation types occur as a combination. However, under low gene
expression demand, copy-number and point mutations are mutually exclusive; here,
owing to their higher frequency, adaptation is dominated by copy-number mutations,
in a process we term amplification hindrance. Ultimately, due to high reversal
rates and pleiotropic cost, copy-number mutations may not only serve as a crude
and transient adaptation, but also constrain sequence divergence over evolutionary
time scales.
acknowledgement: "We are grateful to N Barton, F Kondrashov, M Lagator, M Pleska,
R Roemhild, D Siekhaus, and G\r\nTkacik for input on the manuscript and to K Tomasek
for help with flow cytometry."
article_number: e82240
article_processing_charge: No
article_type: original
author:
- first_name: Isabella
full_name: Tomanek, Isabella
id: 3981F020-F248-11E8-B48F-1D18A9856A87
last_name: Tomanek
orcid: 0000-0001-6197-363X
- first_name: Calin C
full_name: Guet, Calin C
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
citation:
ama: Tomanek I, Guet CC. Adaptation dynamics between copynumber and point mutations.
eLife. 2022;11. doi:10.7554/ELIFE.82240
apa: Tomanek, I., & Guet, C. C. (2022). Adaptation dynamics between copynumber
and point mutations. ELife. eLife Sciences Publications. https://doi.org/10.7554/ELIFE.82240
chicago: Tomanek, Isabella, and Calin C Guet. “Adaptation Dynamics between Copynumber
and Point Mutations.” ELife. eLife Sciences Publications, 2022. https://doi.org/10.7554/ELIFE.82240.
ieee: I. Tomanek and C. C. Guet, “Adaptation dynamics between copynumber and point
mutations,” eLife, vol. 11. eLife Sciences Publications, 2022.
ista: Tomanek I, Guet CC. 2022. Adaptation dynamics between copynumber and point
mutations. eLife. 11, e82240.
mla: Tomanek, Isabella, and Calin C. Guet. “Adaptation Dynamics between Copynumber
and Point Mutations.” ELife, vol. 11, e82240, eLife Sciences Publications,
2022, doi:10.7554/ELIFE.82240.
short: I. Tomanek, C.C. Guet, ELife 11 (2022).
corr_author: '1'
date_created: 2023-01-22T23:00:55Z
date_published: 2022-12-22T00:00:00Z
date_updated: 2025-03-06T14:03:50Z
day: '22'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.7554/ELIFE.82240
external_id:
isi:
- '000912674700001'
pmid:
- '36546673'
file:
- access_level: open_access
checksum: 9321fd5f06ff59d5e2d33daee84b3da1
content_type: application/pdf
creator: dernst
date_created: 2023-01-23T08:56:21Z
date_updated: 2023-01-23T08:56:21Z
file_id: '12338'
file_name: 2022_eLife_Tomanek.pdf
file_size: 8835954
relation: main_file
success: 1
file_date_updated: 2023-01-23T08:56:21Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
eissn:
- 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://doi.org/10.5281/zenodo.6974122
record:
- id: '12339'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Adaptation dynamics between copynumber and point mutations
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2022'
...
---
_id: '12339'
abstract:
- lang: eng
text: 'Copy-number and point mutations form the basis for most evolutionary novelty
through the process of gene duplication and divergence. While a plethora of genomic
sequence data reveals the long-term fate of diverging coding sequences and their
cis-regulatory elements, little is known about the early dynamics around the duplication
event itself. In microorganisms, selection for increased gene expression often
drives the expansion of gene copy-number mutations, which serves as a crude adaptation,
prior to divergence through refining point mutations. Using a simple synthetic
genetic system that allows us to distinguish copy-number and point mutations,
we study their early and transient adaptive dynamics in real-time in Escherichia
coli. We find two qualitatively different routes of adaptation depending on the
level of functional improvement selected for: In conditions of high gene expression
demand, the two types of mutations occur as a combination. Under low gene expression
demand, negative epistasis between the two types of mutations renders them mutually
exclusive. Thus, owing to their higher frequency, adaptation is dominated by copy-number
mutations. Ultimately, due to high rates of reversal and pleiotropic cost, copy-number
mutations may not only serve as a crude and transient adaptation but also constrain
sequence divergence over evolutionary time scales.'
article_processing_charge: No
author:
- first_name: Isabella
full_name: Tomanek, Isabella
id: 3981F020-F248-11E8-B48F-1D18A9856A87
last_name: Tomanek
orcid: 0000-0001-6197-363X
- first_name: Calin C
full_name: Guet, Calin C
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
citation:
ama: Tomanek I, Guet CC. Flow cytometry YFP and CFP data and deep sequencing data
of populations evolving in galactose. 2022. doi:10.5061/dryad.rfj6q57ds
apa: Tomanek, I., & Guet, C. C. (2022). Flow cytometry YFP and CFP data and
deep sequencing data of populations evolving in galactose. Dryad. https://doi.org/10.5061/dryad.rfj6q57ds
chicago: Tomanek, Isabella, and Calin C Guet. “Flow Cytometry YFP and CFP Data and
Deep Sequencing Data of Populations Evolving in Galactose.” Dryad, 2022. https://doi.org/10.5061/dryad.rfj6q57ds.
ieee: I. Tomanek and C. C. Guet, “Flow cytometry YFP and CFP data and deep sequencing
data of populations evolving in galactose.” Dryad, 2022.
ista: Tomanek I, Guet CC. 2022. Flow cytometry YFP and CFP data and deep sequencing
data of populations evolving in galactose, Dryad, 10.5061/dryad.rfj6q57ds.
mla: Tomanek, Isabella, and Calin C. Guet. Flow Cytometry YFP and CFP Data and
Deep Sequencing Data of Populations Evolving in Galactose. Dryad, 2022, doi:10.5061/dryad.rfj6q57ds.
short: I. Tomanek, C.C. Guet, (2022).
corr_author: '1'
date_created: 2023-01-23T09:00:37Z
date_published: 2022-12-23T00:00:00Z
date_updated: 2025-03-06T14:03:50Z
day: '23'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.5061/dryad.rfj6q57ds
main_file_link:
- open_access: '1'
url: https://doi.org/10.5061/dryad.rfj6q57ds
month: '12'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
record:
- id: '12333'
relation: used_in_publication
status: public
status: public
title: Flow cytometry YFP and CFP data and deep sequencing data of populations evolving
in galactose
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...