---
OA_place: publisher
OA_type: diamond
_id: '20034'
abstract:
- lang: eng
  text: We introduce LDAdam, a memory-efficient optimizer for training large models,
    that performs adaptive optimization steps within lower dimensional subspaces,
    while consistently exploring the full parameter space during training. This strategy
    keeps the optimizer's memory footprint to a fraction of the model size. LDAdam
    relies on a new projection-aware update rule for the optimizer states that allows
    for transitioning between subspaces, i.e., estimation of the statistics of the
    projected gradients. To mitigate the errors due to low-rank projection, LDAdam
    integrates a new generalized error feedback mechanism, which explicitly accounts
    for both gradient and optimizer state compression. We prove the convergence of
    LDAdam under standard assumptions, and provide empirical evidence that LDAdam
    allows for efficient fine-tuning and pre-training of language models.
article_processing_charge: No
arxiv: 1
author:
- first_name: Thomas
  full_name: Robert, Thomas
  last_name: Robert
- first_name: Mher
  full_name: Safaryan, Mher
  id: dd546b39-0804-11ed-9c55-ef075c39778d
  last_name: Safaryan
- first_name: Ionut-Vlad
  full_name: Modoranu, Ionut-Vlad
  id: 449f7a18-f128-11eb-9611-9b430c0c6333
  last_name: Modoranu
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Robert T, Safaryan M, Modoranu I-V, Alistarh D-A. LDAdam: Adaptive optimization
    from low-dimensional gradient statistics. In: <i>13th International Conference
    on Learning Representations</i>. ICLR; 2025:101877-101913.'
  apa: 'Robert, T., Safaryan, M., Modoranu, I.-V., &#38; Alistarh, D.-A. (2025). LDAdam:
    Adaptive optimization from low-dimensional gradient statistics. In <i>13th International
    Conference on Learning Representations</i> (pp. 101877–101913). Singapore, Singapore:
    ICLR.'
  chicago: 'Robert, Thomas, Mher Safaryan, Ionut-Vlad Modoranu, and Dan-Adrian Alistarh.
    “LDAdam: Adaptive Optimization from Low-Dimensional Gradient Statistics.” In <i>13th
    International Conference on Learning Representations</i>, 101877–913. ICLR, 2025.'
  ieee: 'T. Robert, M. Safaryan, I.-V. Modoranu, and D.-A. Alistarh, “LDAdam: Adaptive
    optimization from low-dimensional gradient statistics,” in <i>13th International
    Conference on Learning Representations</i>, Singapore, Singapore, 2025, pp. 101877–101913.'
  ista: 'Robert T, Safaryan M, Modoranu I-V, Alistarh D-A. 2025. LDAdam: Adaptive
    optimization from low-dimensional gradient statistics. 13th International Conference
    on Learning Representations. ICLR: International Conference on Learning Representations,
    101877–101913.'
  mla: 'Robert, Thomas, et al. “LDAdam: Adaptive Optimization from Low-Dimensional
    Gradient Statistics.” <i>13th International Conference on Learning Representations</i>,
    ICLR, 2025, pp. 101877–913.'
  short: T. Robert, M. Safaryan, I.-V. Modoranu, D.-A. Alistarh, in:, 13th International
    Conference on Learning Representations, ICLR, 2025, pp. 101877–101913.
conference:
  end_date: 2025-04-28
  location: Singapore, Singapore
  name: 'ICLR: International Conference on Learning Representations'
  start_date: 2025-04-24
corr_author: '1'
date_created: 2025-07-20T22:02:02Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-08-04T08:41:10Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
external_id:
  arxiv:
  - '2410.16103'
file:
- access_level: open_access
  checksum: 9327d82569358d7bf1c3ec1a9952e721
  content_type: application/pdf
  creator: dernst
  date_created: 2025-08-04T08:39:51Z
  date_updated: 2025-08-04T08:39:51Z
  file_id: '20113'
  file_name: 2025_ICLR_Robert.pdf
  file_size: 1346111
  relation: main_file
  success: 1
file_date_updated: 2025-08-04T08:39:51Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 101877-101913
publication: 13th International Conference on Learning Representations
publication_identifier:
  isbn:
  - '9798331320850'
publication_status: published
publisher: ICLR
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/IST-DASLab/LDAdam
scopus_import: '1'
status: public
title: 'LDAdam: Adaptive optimization from low-dimensional gradient statistics'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
_id: '20035'
abstract:
- lang: eng
  text: "Deep neural networks (DNNs) at convergence consistently represent the training
    data in the last layer via a geometric structure referred to as neural collapse.
    This empirical evidence has spurred a line of theoretical research aimed at proving
    the emergence of neural collapse, mostly focusing on the unconstrained features
    model. Here, the features of the penultimate layer are free variables, which makes
    the model data-agnostic and puts into question its ability to capture DNN training.
    Our work addresses the issue, moving away from unconstrained features and\r\nstudying
    DNNs that end with at least two linear layers. We first prove generic guarantees
    on neural collapse that assume (i) low training error and balancedness of linear
    layers (for within-class variability collapse), and (ii) bounded conditioning
    of the features before the linear part (for orthogonality of class-means, and
    their alignment with weight matrices). The balancedness refers to the fact that
    W⊤ℓ+1Wℓ+1 ≈ WℓW⊤ℓfor any pair of consecutive weight matrices of the linear part,
    and the bounded conditioning requires a well-behaved ratio between largest and
    smallest non-zero singular values of the features. We then show that such assumptions
    hold for gradient descent training with weight decay: (i) for networks with a
    wide first layer, we prove low training error and balancedness, and (ii) for solutions
    that are either nearly optimal or stable under large learning rates, we additionally
    prove the bounded conditioning. Taken together, our results are the first to show
    neural collapse in the end-to-end training of DNNs."
acknowledgement: M. M. and P. S. are funded by the European Union (ERC, INF2, project
  number 101161364). Views and opinions expressed are however those of the author(s)
  only and do not necessarily reflect those of the European Union or the European
  Research Council Executive Agency. Neither the European Union nor the granting authority
  can be held responsible for them.
article_processing_charge: No
arxiv: 1
author:
- first_name: Arthur
  full_name: Jacot, Arthur
  last_name: Jacot
- first_name: Peter
  full_name: Súkeník, Peter
  id: d64d6a8d-eb8e-11eb-b029-96fd216dec3c
  last_name: Súkeník
- first_name: Zihan
  full_name: Wang, Zihan
  last_name: Wang
- first_name: Marco
  full_name: Mondelli, Marco
  id: 27EB676C-8706-11E9-9510-7717E6697425
  last_name: Mondelli
  orcid: 0000-0002-3242-7020
citation:
  ama: 'Jacot A, Súkeník P, Wang Z, Mondelli M. Wide neural networks trained with
    weight decay provably exhibit neural collapse. In: <i>13th International Conference
    on Learning Representations</i>. ICLR; 2025:1905-1931.'
  apa: 'Jacot, A., Súkeník, P., Wang, Z., &#38; Mondelli, M. (2025). Wide neural networks
    trained with weight decay provably exhibit neural collapse. In <i>13th International
    Conference on Learning Representations</i> (pp. 1905–1931). Singapore, Singapore:
    ICLR.'
  chicago: Jacot, Arthur, Peter Súkeník, Zihan Wang, and Marco Mondelli. “Wide Neural
    Networks Trained with Weight Decay Provably Exhibit Neural Collapse.” In <i>13th
    International Conference on Learning Representations</i>, 1905–31. ICLR, 2025.
  ieee: A. Jacot, P. Súkeník, Z. Wang, and M. Mondelli, “Wide neural networks trained
    with weight decay provably exhibit neural collapse,” in <i>13th International
    Conference on Learning Representations</i>, Singapore, Singapore, 2025, pp. 1905–1931.
  ista: 'Jacot A, Súkeník P, Wang Z, Mondelli M. 2025. Wide neural networks trained
    with weight decay provably exhibit neural collapse. 13th International Conference
    on Learning Representations. ICLR: International Conference on Learning Representations,
    1905–1931.'
  mla: Jacot, Arthur, et al. “Wide Neural Networks Trained with Weight Decay Provably
    Exhibit Neural Collapse.” <i>13th International Conference on Learning Representations</i>,
    ICLR, 2025, pp. 1905–31.
  short: A. Jacot, P. Súkeník, Z. Wang, M. Mondelli, in:, 13th International Conference
    on Learning Representations, ICLR, 2025, pp. 1905–1931.
conference:
  end_date: 2025-04-28
  location: Singapore, Singapore
  name: 'ICLR: International Conference on Learning Representations'
  start_date: 2025-04-24
corr_author: '1'
date_created: 2025-07-20T22:02:02Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-08-04T08:47:00Z
day: '01'
ddc:
- '000'
department:
- _id: MaMo
external_id:
  arxiv:
  - '2410.04887'
file:
- access_level: open_access
  checksum: 59c48c173887139647cc9839c0801136
  content_type: application/pdf
  creator: dernst
  date_created: 2025-08-04T08:45:43Z
  date_updated: 2025-08-04T08:45:43Z
  file_id: '20114'
  file_name: 2025_ICLR_Jacot.pdf
  file_size: 1337236
  relation: main_file
  success: 1
file_date_updated: 2025-08-04T08:45:43Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1905-1931
project:
- _id: 911e6d1f-16d5-11f0-9cad-c5c68c6a1cdf
  grant_number: '101161364'
  name: 'Inference in High Dimensions: Light-speed Algorithms and Information Limits'
publication: 13th International Conference on Learning Representations
publication_identifier:
  isbn:
  - '9798331320850'
publication_status: published
publisher: ICLR
quality_controlled: '1'
scopus_import: '1'
status: public
title: Wide neural networks trained with weight decay provably exhibit neural collapse
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
_id: '20036'
abstract:
- lang: eng
  text: 'We introduce NeCo: Patch Neighbor Consistency, a novel self-supervised training
    loss that enforces patch-level nearest neighbor consistency across a student and
    teacher model. Compared to contrastive approaches that only yield binary learning
    signals, i.e. "attract" and "repel", this approach benefits from the more fine-grained
    learning signal of sorting spatially dense features relative to reference patches.
    Our method leverages differentiable sorting applied on top of pretrained representations,
    such as DINOv2-registers to bootstrap the learning signal and further improve
    upon them. This dense post-pretraining leads to superior performance across various
    models and datasets, despite requiring only 19 hours on a single GPU. This method
    generates high-quality dense feature encoders and establishes several new state-of-the-art
    results such as +2.3 % and +4.2% for non-parametric in-context semantic segmentation
    on ADE20k and Pascal VOC, +1.6% and +4.8% for linear segmentation evaluations
    on COCO-Things and -Stuff and improvements in the 3D understanding of multi-view
    consistency on SPair-71k, by more than 1.5%.'
article_processing_charge: No
arxiv: 1
author:
- first_name: Valentinos
  full_name: Pariza, Valentinos
  last_name: Pariza
- first_name: Mohammadreza
  full_name: Salehi, Mohammadreza
  last_name: Salehi
- first_name: Gertjan
  full_name: Burghouts, Gertjan
  last_name: Burghouts
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Yuki M.
  full_name: Asano, Yuki M.
  last_name: Asano
citation:
  ama: 'Pariza V, Salehi M, Burghouts G, Locatello F, Asano YM. Near, far: Patch-ordering
    enhances vision foundation models’ scene understanding. In: <i>13th International
    Conference on Learning Representations</i>. ICLR; 2025:72303-72330.'
  apa: 'Pariza, V., Salehi, M., Burghouts, G., Locatello, F., &#38; Asano, Y. M. (2025).
    Near, far: Patch-ordering enhances vision foundation models’ scene understanding.
    In <i>13th International Conference on Learning Representations</i> (pp. 72303–72330).
    Singapore, Singapore: ICLR.'
  chicago: 'Pariza, Valentinos, Mohammadreza Salehi, Gertjan Burghouts, Francesco
    Locatello, and Yuki M. Asano. “Near, Far: Patch-Ordering Enhances Vision Foundation
    Models’ Scene Understanding.” In <i>13th International Conference on Learning
    Representations</i>, 72303–30. ICLR, 2025.'
  ieee: 'V. Pariza, M. Salehi, G. Burghouts, F. Locatello, and Y. M. Asano, “Near,
    far: Patch-ordering enhances vision foundation models’ scene understanding,” in
    <i>13th International Conference on Learning Representations</i>, Singapore, Singapore,
    2025, pp. 72303–72330.'
  ista: 'Pariza V, Salehi M, Burghouts G, Locatello F, Asano YM. 2025. Near, far:
    Patch-ordering enhances vision foundation models’ scene understanding. 13th International
    Conference on Learning Representations. ICLR: International Conference on Learning
    Representations, 72303–72330.'
  mla: 'Pariza, Valentinos, et al. “Near, Far: Patch-Ordering Enhances Vision Foundation
    Models’ Scene Understanding.” <i>13th International Conference on Learning Representations</i>,
    ICLR, 2025, pp. 72303–30.'
  short: V. Pariza, M. Salehi, G. Burghouts, F. Locatello, Y.M. Asano, in:, 13th International
    Conference on Learning Representations, ICLR, 2025, pp. 72303–72330.
conference:
  end_date: 2025-04-28
  location: Singapore, Singapore
  name: 'ICLR: International Conference on Learning Representations'
  start_date: 2025-04-24
date_created: 2025-07-20T22:02:03Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-08-04T08:10:55Z
day: '01'
ddc:
- '000'
department:
- _id: FrLo
external_id:
  arxiv:
  - '2408.11054'
file:
- access_level: open_access
  checksum: ddbe981f3ad3f6cb6daf12c954822eb8
  content_type: application/pdf
  creator: dernst
  date_created: 2025-08-04T08:09:43Z
  date_updated: 2025-08-04T08:09:43Z
  file_id: '20109'
  file_name: 2025_ICLR_Pariza.pdf
  file_size: 37788223
  relation: main_file
  success: 1
file_date_updated: 2025-08-04T08:09:43Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 72303-72330
publication: 13th International Conference on Learning Representations
publication_identifier:
  isbn:
  - '9798331320850'
publication_status: published
publisher: ICLR
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Near, far: Patch-ordering enhances vision foundation models'' scene understanding'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
_id: '20037'
abstract:
- lang: eng
  text: 'Disentangling polysemantic neurons is at the core of many current approaches
    to interpretability of large language models. Here we attempt to study how disentanglement
    can be used to understand performance, particularly under weight sparsity, a leading
    post-training optimization technique. We suggest a novel measure for estimating
    neuronal entanglement: the Wasserstein distance of a neuron''s output distribution
    to a Gaussian. Moreover, we show the existence of a small number of highly entangled
    "Wasserstein Neurons" in each linear layer of an LLM, characterized by their highly
    non-Gaussian output distributions, their role in mapping similar inputs to dissimilar
    outputs, and their significant impact on model accuracy. To study these phenomena,
    we propose a new experimental framework for disentangling polysemantic neurons.
    Our framework separates each layer''s inputs to create a mixture of experts where
    each neuron''s output is computed by a mixture of neurons of lower Wasserstein
    distance, each better at maintaining accuracy when sparsified without retraining.
    We provide strong evidence that this is because the mixture of sparse experts
    is effectively disentangling the input-output relationship of individual neurons,
    in particular the difficult Wasserstein neurons.'
acknowledgement: "The authors would like to extend their gratitude to Lori Leu for
  her insightful comments on the\r\napplication of the Wasserstein distance metric.
  We also wish to thank Elias Frantar for his help in\r\nworking with the SparseGPT
  implementation and his advice for the project. Additionally, we would like to thank
  Tony Tong Wang and Thomas Athey for their valuable feedback and constructive discussions.\r\nThis
  work was supported by an NIH Brains CONNECTS U01 grant and AMD’s AI & HPC Fund."
article_processing_charge: No
arxiv: 1
author:
- first_name: Shashata
  full_name: Sawmya, Shashata
  last_name: Sawmya
- first_name: Linghao
  full_name: Kong, Linghao
  last_name: Kong
- first_name: Ilia
  full_name: Markov, Ilia
  id: D0CF4148-C985-11E9-8066-0BDEE5697425
  last_name: Markov
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Nir
  full_name: Shavit, Nir
  last_name: Shavit
citation:
  ama: 'Sawmya S, Kong L, Markov I, Alistarh D-A, Shavit N. Wasserstein distances,
    neuronal entanglement, and sparsity. In: <i>13th International Conference on Learning
    Representations</i>. ICLR; 2025:26244-26274.'
  apa: 'Sawmya, S., Kong, L., Markov, I., Alistarh, D.-A., &#38; Shavit, N. (2025).
    Wasserstein distances, neuronal entanglement, and sparsity. In <i>13th International
    Conference on Learning Representations</i> (pp. 26244–26274). Singapore, Singapore:
    ICLR.'
  chicago: Sawmya, Shashata, Linghao Kong, Ilia Markov, Dan-Adrian Alistarh, and Nir
    Shavit. “Wasserstein Distances, Neuronal Entanglement, and Sparsity.” In <i>13th
    International Conference on Learning Representations</i>, 26244–74. ICLR, 2025.
  ieee: S. Sawmya, L. Kong, I. Markov, D.-A. Alistarh, and N. Shavit, “Wasserstein
    distances, neuronal entanglement, and sparsity,” in <i>13th International Conference
    on Learning Representations</i>, Singapore, Singapore, 2025, pp. 26244–26274.
  ista: 'Sawmya S, Kong L, Markov I, Alistarh D-A, Shavit N. 2025. Wasserstein distances,
    neuronal entanglement, and sparsity. 13th International Conference on Learning
    Representations. ICLR: International Conference on Learning Representations, 26244–26274.'
  mla: Sawmya, Shashata, et al. “Wasserstein Distances, Neuronal Entanglement, and
    Sparsity.” <i>13th International Conference on Learning Representations</i>, ICLR,
    2025, pp. 26244–74.
  short: S. Sawmya, L. Kong, I. Markov, D.-A. Alistarh, N. Shavit, in:, 13th International
    Conference on Learning Representations, ICLR, 2025, pp. 26244–26274.
conference:
  end_date: 2025-04-28
  location: Singapore, Singapore
  name: 'ICLR: International Conference on Learning Representations'
  start_date: 2025-04-24
corr_author: '1'
date_created: 2025-07-20T22:02:03Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-08-04T08:16:43Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
external_id:
  arxiv:
  - '2405.15756'
file:
- access_level: open_access
  checksum: 39a8fa7dbdd7029859e156f53f20f6bc
  content_type: application/pdf
  creator: dernst
  date_created: 2025-08-04T08:14:09Z
  date_updated: 2025-08-04T08:14:09Z
  file_id: '20110'
  file_name: 2025_ICLR_Sawmya.pdf
  file_size: 5447177
  relation: main_file
  success: 1
file_date_updated: 2025-08-04T08:14:09Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 26244-26274
publication: 13th International Conference on Learning Representations
publication_identifier:
  isbn:
  - '9798331320850'
publication_status: published
publisher: ICLR
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/Shavit-Lab/Sparse-Expansion
scopus_import: '1'
status: public
title: Wasserstein distances, neuronal entanglement, and sparsity
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
_id: '20038'
abstract:
- lang: eng
  text: Pruning eliminates unnecessary parameters in neural networks; it offers a
    promising solution to the growing computational demands of large language models
    (LLMs). While many focus on post-training pruning, sparse pre-training--which
    combines pruning and pre-training into a single phase--provides a simpler alternative.
    In this work, we present the first systematic exploration of optimal sparse pre-training
    configurations for LLMs through an examination of 80 unique pruning schedules
    across different sparsity levels and training durations. We find that initiating
    pruning at 25% of total training compute and concluding at 75% achieves near-optimal
    final evaluation loss. These findings provide valuable insights for efficient
    and effective sparse pre-training of LLMs. Furthermore, we propose a new scaling
    law that modifies the Chinchilla scaling law to use the average parameter count
    over pre-training. Through empirical and theoretical validation, we demonstrate
    that this modified scaling law accurately models evaluation loss for both sparsely
    and densely pre-trained LLMs, unifying scaling laws across pre-training paradigms.
    Our findings indicate that while sparse pre-training achieves the same final model
    quality as dense pre-training for equivalent compute budgets, it provides substantial
    benefits through reduced model size, enabling significant potential computational
    savings during inference.
acknowledgement: "We are deeply grateful to Elias Frantar, Naveen Kumar, Sanjiv Kumar,
  Daniel\r\nM. Roy, and Clemens Schaefer for their valuable feedback and thoughtful
  review of this paper.\r\nWe also acknowledge the critical support provided by the
  Google CoreML Performance Team, and Google Research during this project. We further
  recognize the extended team at Google DeepMind, who enabled and supported this research
  direction.\r\nThis work was in part supported by the Sloan Foundation, the MIT-IBM
  Watson AI Lab, Apple, and SRC JUMP 2.0 (CoCoSys)."
article_processing_charge: No
arxiv: 1
author:
- first_name: Tian
  full_name: Jin, Tian
  last_name: Jin
- first_name: Ahmed Imtiaz
  full_name: Humayun, Ahmed Imtiaz
  last_name: Humayun
- first_name: Utku
  full_name: Evci, Utku
  last_name: Evci
- first_name: Suvinay
  full_name: Subramanian, Suvinay
  last_name: Subramanian
- first_name: Amir
  full_name: Yazdanbakhsh, Amir
  last_name: Yazdanbakhsh
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Gintare Karolina
  full_name: Dziugaite, Gintare Karolina
  last_name: Dziugaite
citation:
  ama: 'Jin T, Humayun AI, Evci U, et al. The journey matters: Average parameter count
    over pre-training unifies sparse and dense scaling laws. In: <i>13th International
    Conference on Learning Representations</i>. ICLR; 2025:85165-85181.'
  apa: 'Jin, T., Humayun, A. I., Evci, U., Subramanian, S., Yazdanbakhsh, A., Alistarh,
    D.-A., &#38; Dziugaite, G. K. (2025). The journey matters: Average parameter count
    over pre-training unifies sparse and dense scaling laws. In <i>13th International
    Conference on Learning Representations</i> (pp. 85165–85181). Singapore, Singapore:
    ICLR.'
  chicago: 'Jin, Tian, Ahmed Imtiaz Humayun, Utku Evci, Suvinay Subramanian, Amir
    Yazdanbakhsh, Dan-Adrian Alistarh, and Gintare Karolina Dziugaite. “The Journey
    Matters: Average Parameter Count over Pre-Training Unifies Sparse and Dense Scaling
    Laws.” In <i>13th International Conference on Learning Representations</i>, 85165–81.
    ICLR, 2025.'
  ieee: 'T. Jin <i>et al.</i>, “The journey matters: Average parameter count over
    pre-training unifies sparse and dense scaling laws,” in <i>13th International
    Conference on Learning Representations</i>, Singapore, Singapore, 2025, pp. 85165–85181.'
  ista: 'Jin T, Humayun AI, Evci U, Subramanian S, Yazdanbakhsh A, Alistarh D-A, Dziugaite
    GK. 2025. The journey matters: Average parameter count over pre-training unifies
    sparse and dense scaling laws. 13th International Conference on Learning Representations.
    ICLR: International Conference on Learning Representations, 85165–85181.'
  mla: 'Jin, Tian, et al. “The Journey Matters: Average Parameter Count over Pre-Training
    Unifies Sparse and Dense Scaling Laws.” <i>13th International Conference on Learning
    Representations</i>, ICLR, 2025, pp. 85165–81.'
  short: T. Jin, A.I. Humayun, U. Evci, S. Subramanian, A. Yazdanbakhsh, D.-A. Alistarh,
    G.K. Dziugaite, in:, 13th International Conference on Learning Representations,
    ICLR, 2025, pp. 85165–85181.
conference:
  end_date: 2025-04-28
  location: Singapore, Singapore
  name: 'ICLR: International Conference on Learning Representations'
  start_date: 2025-04-24
date_created: 2025-07-20T22:02:03Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-08-04T08:24:59Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
external_id:
  arxiv:
  - '2501.12486 '
file:
- access_level: open_access
  checksum: dbc27120e9aba67dffbd9e5d513a6803
  content_type: application/pdf
  creator: dernst
  date_created: 2025-08-04T08:23:47Z
  date_updated: 2025-08-04T08:23:47Z
  file_id: '20111'
  file_name: 2025_ICLR_Jin.pdf
  file_size: 704989
  relation: main_file
  success: 1
file_date_updated: 2025-08-04T08:23:47Z
has_accepted_license: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 85165-85181
publication: 13th International Conference on Learning Representations
publication_identifier:
  isbn:
  - '9798331320850'
publication_status: published
publisher: ICLR
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The journey matters: Average parameter count over pre-training unifies sparse
  and dense scaling laws'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20040'
abstract:
- lang: eng
  text: 'Contractive coupling rates have been recently introduced by Conforti as a
    tool to establish convex Sobolev inequalities (including modified log-Sobolev
    and Poincaré inequality) for some classes of Markov chains. In this work, for
    most of the examples discussed by Conforti, we use contractive coupling rates
    to prove stronger inequalities, in the form of curvature lower bounds (in entropic
    and discrete Bakry–Émery sense) and geodesic convexity of some entropic functionals.
    In addition, we recall and give straightforward generalizations of some notions
    of coarse Ricci curvature, and we discuss some of their properties and relations
    with the concepts of couplings and coupling rates: as an application, we show
    exponential contraction of the p-Wasserstein distance for the heat flow in the
    aforementioned examples.'
acknowledgement: "The author warmly thanks Jan Maas for suggesting the project and
  for his guidance, and Melchior Wirth and Haonan Zhang for useful discussions. The
  author is also grateful to an anonymous reviewer for carefully reading the manuscript
  and providing many valuable suggestions. The author gratefully acknowledges support
  by the European Research Council (ERC) under the European Union’s Horizon 2020 research
  and innovation programme\r\n(grant agreement No. 716117) and by the Austrian Science
  Fund (FWF), Project SFB F65."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Francesco
  full_name: Pedrotti, Francesco
  id: d3ac8ac6-dc8d-11ea-abe3-e2a9628c4c3c
  last_name: Pedrotti
citation:
  ama: Pedrotti F. Contractive coupling rates and curvature lower bounds for Markov
    chains. <i>The Annals of Applied Probability</i>. 2025;35(1):196-250. doi:<a href="https://doi.org/10.1214/24-aap2113">10.1214/24-aap2113</a>
  apa: Pedrotti, F. (2025). Contractive coupling rates and curvature lower bounds
    for Markov chains. <i>The Annals of Applied Probability</i>. Institute of Mathematical
    Statistics. <a href="https://doi.org/10.1214/24-aap2113">https://doi.org/10.1214/24-aap2113</a>
  chicago: Pedrotti, Francesco. “Contractive Coupling Rates and Curvature Lower Bounds
    for Markov Chains.” <i>The Annals of Applied Probability</i>. Institute of Mathematical
    Statistics, 2025. <a href="https://doi.org/10.1214/24-aap2113">https://doi.org/10.1214/24-aap2113</a>.
  ieee: F. Pedrotti, “Contractive coupling rates and curvature lower bounds for Markov
    chains,” <i>The Annals of Applied Probability</i>, vol. 35, no. 1. Institute of
    Mathematical Statistics, pp. 196–250, 2025.
  ista: Pedrotti F. 2025. Contractive coupling rates and curvature lower bounds for
    Markov chains. The Annals of Applied Probability. 35(1), 196–250.
  mla: Pedrotti, Francesco. “Contractive Coupling Rates and Curvature Lower Bounds
    for Markov Chains.” <i>The Annals of Applied Probability</i>, vol. 35, no. 1,
    Institute of Mathematical Statistics, 2025, pp. 196–250, doi:<a href="https://doi.org/10.1214/24-aap2113">10.1214/24-aap2113</a>.
  short: F. Pedrotti, The Annals of Applied Probability 35 (2025) 196–250.
corr_author: '1'
date_created: 2025-07-21T07:49:15Z
date_published: 2025-02-01T00:00:00Z
date_updated: 2025-11-05T13:50:07Z
day: '01'
department:
- _id: JaMa
doi: 10.1214/24-aap2113
ec_funded: 1
external_id:
  arxiv:
  - '2308.00516'
  isi:
  - '001434322900006'
intvolume: '        35'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2308.00516
month: '02'
oa: 1
oa_version: Preprint
page: 196 - 250
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
publication: The Annals of Applied Probability
publication_identifier:
  issn:
  - 1050-5164
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
related_material:
  record:
  - id: '17351'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Contractive coupling rates and curvature lower bounds for Markov chains
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '20043'
abstract:
- lang: eng
  text: We establish an isomorphism of complex K-theory of the moduli space  M  of
    “SL n​ ”-Higgs bundles of degree d and rank n (in the sense of Hausel–Thaddeus)
    and twisted complex K-theory of the orbifold  M  of PGL n​ -Higgs bundles of degree
    e, where (n,d)=(n,e)=1. Along the way, we prove the vanishing of torsion for H
    ∗ ( M ) and certain twisted complex K-theory groups of  M . We also extend Arinkin’s
    autoduality of compactified Jacobian to a derived equivalence between SL n​ -
    and PGL n​ -Hitchin systems over the elliptic locus. In the appendix, we develop
    a formalism of G-sheaves of spectra, generalising equivariant homotopy theory
    to a relative setting.
acknowledgement: "It is a pleasure to thank Tom Baird for sharing his insights about
  vanishing of torsion for H.M{1\r\n2/. Furthermore, we would like to thank him for
  bringing [25] to our attention. We also thank Alexander Kupers for enlightening
  conversations about the Atiyah–Hirzebruch spectral sequence and for pointing out
  a reference. We are grateful to Victoria Hoskins and Simon Pepin-Lehalleur for sharing
  a preprint of their recent paper on a motivic version of topological mirror symmetry
  and for useful remarks on Section 6. Anne Larsen pointed out that our previous proof
  Lemma 4.5 was incomplete, we thank her for bringing this to our attention. We are
  grateful to the anonymous referee for many valuable comments that have improved
  the paper tremendously. The report we received was one of the most detailed referee
  report either of us has ever seen. We thank them for their hard work and the resulting
  contribution to this paper. Michael Groechenig was supported by an NSERC discovery
  grant and an Alfred P. Sloan\r\nfellowship. Shiyu Shen has received funding from
  the European Union’s Horizon 2020 research\r\nand innovation program under the Marie
  Skłodowska-Curie grant agreement No. 101034413."
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Michael
  full_name: Groechenig, Michael
  last_name: Groechenig
- first_name: Shiyu
  full_name: Shen, Shiyu
  id: 544cccd3-9005-11ec-87bc-94aef1c5b814
  last_name: Shen
  orcid: 0000-0002-4444-8718
citation:
  ama: Groechenig M, Shen S. Complex K-theory of moduli spaces of Higgs bundles. <i>Journal
    of the European Mathematical Society</i>. 2025. doi:<a href="https://doi.org/10.4171/jems/1601">10.4171/jems/1601</a>
  apa: Groechenig, M., &#38; Shen, S. (2025). Complex K-theory of moduli spaces of
    Higgs bundles. <i>Journal of the European Mathematical Society</i>. EMS Press.
    <a href="https://doi.org/10.4171/jems/1601">https://doi.org/10.4171/jems/1601</a>
  chicago: Groechenig, Michael, and Shiyu Shen. “Complex K-Theory of Moduli Spaces
    of Higgs Bundles.” <i>Journal of the European Mathematical Society</i>. EMS Press,
    2025. <a href="https://doi.org/10.4171/jems/1601">https://doi.org/10.4171/jems/1601</a>.
  ieee: M. Groechenig and S. Shen, “Complex K-theory of moduli spaces of Higgs bundles,”
    <i>Journal of the European Mathematical Society</i>. EMS Press, 2025.
  ista: Groechenig M, Shen S. 2025. Complex K-theory of moduli spaces of Higgs bundles.
    Journal of the European Mathematical Society.
  mla: Groechenig, Michael, and Shiyu Shen. “Complex K-Theory of Moduli Spaces of
    Higgs Bundles.” <i>Journal of the European Mathematical Society</i>, EMS Press,
    2025, doi:<a href="https://doi.org/10.4171/jems/1601">10.4171/jems/1601</a>.
  short: M. Groechenig, S. Shen, Journal of the European Mathematical Society (2025).
corr_author: '1'
date_created: 2025-07-21T07:54:50Z
date_published: 2025-03-20T00:00:00Z
date_updated: 2026-02-19T09:24:54Z
day: '20'
department:
- _id: TaHa
doi: 10.4171/jems/1601
ec_funded: 1
external_id:
  arxiv:
  - '2212.10695'
  isi:
  - '001608254800001'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.4171/JEMS/1601
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Journal of the European Mathematical Society
publication_identifier:
  eissn:
  - 1435-9863
  issn:
  - 1435-9855
publication_status: epub_ahead
publisher: EMS Press
quality_controlled: '1'
status: public
title: Complex K-theory of moduli spaces of Higgs bundles
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20044'
abstract:
- lang: eng
  text: Genetic trade-offs—which occur when variants that are beneficial in some contexts
    of natural selection are harmful in others—can influence a wide range of evolutionary
    phenomena, from the maintenance of genetic variation to the evolution of aging
    and sex differences. An extensive body of evolutionary theory has focused on the
    consequences of such trade-offs, and recent analyses of Fisher’s geometric model
    have further quantified the expected proportion of new mutations that exhibit
    trade-offs. However, the theory remains silent regarding the prevalence of trade-offs
    among the variants that contribute to adaptation. Here, we extend Fisher’s geometric
    model to predict the prevalence of trade-offs among the adaptive mutations that
    become established or fixed in a population. We consider trade-offs between sexes,
    habitats, fitness components, and temporally fluctuating environments. In all
    4 scenarios, trade-off alleles are consistently under-represented among established
    relative to new beneficial mutations—an effect that arises from the greater susceptibility
    of trade-off alleles to genetic drift. Adaptation during a population size decline
    exacerbates this deficit of trade-offs among established mutations, whereas population
    expansions dampen it. Consequently, threatened populations should primarily adapt
    using unconditionally beneficial alleles, while invasive populations are more
    prone to adaptation using variants that exhibit trade-offs.
acknowledgement: 'Support for this research came from the European Society of Evolutionary
  Biology (ESEB) through a “Special Topics Network” grant. Further financial support
  came from the European Research Council (ERC-2023-STG916 #101117517, to C.O.), the
  Swedish Research Council (#2022-03603, to C.O.; #2020‑03123, to E.I.S.), the Research
  Council of Norway (Norges forskningsråd #302619, to D.G.), the Alexander von Humboldt
  Foundation and the GenEvo graduate school (to H.K.), the Foundation for Zoological
  Research and the Birgitta Sintring Foundation (#S2024-0007, to M.K.Z.), a postdoctoral
  fellowship from the Consejo Nacional de Humanidades, Ciencias y Tecnología (to A.N.B.),
  and a H2020 Marie Skłodowska-Curie COFUND Action fellowship (#101034413, to F.R.).
  We wish to express our deepest gratitude to Lotte de Vries for extensive discussion
  of the project, rederiving some of our results, and providing comments on an earlier
  version of the manuscript, and to the European Society of Evolutionary Biology (ESEB)
  for a “Special Topics Network” grant that supported workshops that initiated this
  collaboration and facilitated many new ideas and friendships. We also thank two
  anonymous reviewers for their thoughtful comments and suggestions that helped us
  to substantially improve upon the original version of the article.'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Tim
  full_name: Connallon, Tim
  last_name: Connallon
- first_name: Peter
  full_name: Czuppon, Peter
  last_name: Czuppon
- first_name: Colin
  full_name: Olito, Colin
  last_name: Olito
- first_name: Debora
  full_name: Goedert, Debora
  last_name: Goedert
- first_name: Hanna
  full_name: Kokko, Hanna
  last_name: Kokko
- first_name: Angela
  full_name: Nava-Bolaños, Angela
  last_name: Nava-Bolaños
- first_name: Sofie
  full_name: Nilén, Sofie
  last_name: Nilén
- first_name: Erik I
  full_name: Svensson, Erik I
  last_name: Svensson
- first_name: Martyna
  full_name: Zwoinska, Martyna
  last_name: Zwoinska
- first_name: Ludovic
  full_name: Dutoit, Ludovic
  last_name: Dutoit
- first_name: Filip
  full_name: Ruzicka, Filip
  id: 347955dd-57b0-11ee-9095-c28bdd368f4b
  last_name: Ruzicka
citation:
  ama: Connallon T, Czuppon P, Olito C, et al. Predicting the prevalence of genetic
    trade-offs among adaptive substitutions. <i>Evolution</i>. 2025;79(7):1243-1255.
    doi:<a href="https://doi.org/10.1093/evolut/qpaf061">10.1093/evolut/qpaf061</a>
  apa: Connallon, T., Czuppon, P., Olito, C., Goedert, D., Kokko, H., Nava-Bolaños,
    A., … Ruzicka, F. (2025). Predicting the prevalence of genetic trade-offs among
    adaptive substitutions. <i>Evolution</i>. Oxford University Press. <a href="https://doi.org/10.1093/evolut/qpaf061">https://doi.org/10.1093/evolut/qpaf061</a>
  chicago: Connallon, Tim, Peter Czuppon, Colin Olito, Debora Goedert, Hanna Kokko,
    Angela Nava-Bolaños, Sofie Nilén, et al. “Predicting the Prevalence of Genetic
    Trade-Offs among Adaptive Substitutions.” <i>Evolution</i>. Oxford University
    Press, 2025. <a href="https://doi.org/10.1093/evolut/qpaf061">https://doi.org/10.1093/evolut/qpaf061</a>.
  ieee: T. Connallon <i>et al.</i>, “Predicting the prevalence of genetic trade-offs
    among adaptive substitutions,” <i>Evolution</i>, vol. 79, no. 7. Oxford University
    Press, pp. 1243–1255, 2025.
  ista: Connallon T, Czuppon P, Olito C, Goedert D, Kokko H, Nava-Bolaños A, Nilén
    S, Svensson EI, Zwoinska M, Dutoit L, Ruzicka F. 2025. Predicting the prevalence
    of genetic trade-offs among adaptive substitutions. Evolution. 79(7), 1243–1255.
  mla: Connallon, Tim, et al. “Predicting the Prevalence of Genetic Trade-Offs among
    Adaptive Substitutions.” <i>Evolution</i>, vol. 79, no. 7, Oxford University Press,
    2025, pp. 1243–55, doi:<a href="https://doi.org/10.1093/evolut/qpaf061">10.1093/evolut/qpaf061</a>.
  short: T. Connallon, P. Czuppon, C. Olito, D. Goedert, H. Kokko, A. Nava-Bolaños,
    S. Nilén, E.I. Svensson, M. Zwoinska, L. Dutoit, F. Ruzicka, Evolution 79 (2025)
    1243–1255.
date_created: 2025-07-21T07:57:28Z
date_published: 2025-07-01T00:00:00Z
date_updated: 2025-09-30T14:06:38Z
day: '01'
ddc:
- '570'
department:
- _id: BeVi
doi: 10.1093/evolut/qpaf061
ec_funded: 1
external_id:
  isi:
  - '001477180800001'
file:
- access_level: open_access
  checksum: 68c4c996d0e8c9ee3d4fb61bca75b31a
  content_type: application/pdf
  creator: dernst
  date_created: 2025-07-22T10:04:57Z
  date_updated: 2025-07-22T10:04:57Z
  file_id: '20068'
  file_name: 2025_Evolution_Connallon.pdf
  file_size: 8150623
  relation: main_file
  success: 1
file_date_updated: 2025-07-22T10:04:57Z
has_accepted_license: '1'
intvolume: '        79'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 1243-1255
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Evolution
publication_identifier:
  eissn:
  - 1558-5646
  issn:
  - 0014-3820
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Predicting the prevalence of genetic trade-offs among adaptive substitutions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 79
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: repository
OA_type: green
_id: '20045'
abstract:
- lang: eng
  text: We consider the time evolution of the renormalized Nelson model, which describes
    N bosons linearly coupled to a quantized scalar field, in the mean-field limit
    of many particles N≫1 with coupling constant proportional to N^−1/2. First, we
    show that initial states exhibiting Bose–Einstein condensation for the particles
    and approximating a coherent state for the quantum field retain their structure
    under the many-body time evolution. Concretely, the dynamics of the reduced densities
    are approximated by solutions of two coupled PDEs, the Schrödinger–Klein–Gordon
    equations. Second, we construct a renormalized Bogoliubov evolution that describes
    the quantum fluctuations around the Schrödinger–Klein–Gordon equations. This evolution
    is used to extend the approximation of the evolved many-body state to the full
    norm topology. In summary, we provide a comprehensive analysis of the Nelson model
    that reveals the role of renormalization in the mean-field Bogoliubov theory.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Marco
  full_name: Falconi, Marco
  last_name: Falconi
- first_name: Jonas
  full_name: Lampart, Jonas
  last_name: Lampart
- first_name: Nikolai
  full_name: Leopold, Nikolai
  last_name: Leopold
- first_name: David Johannes
  full_name: Mitrouskas, David Johannes
  id: cbddacee-2b11-11eb-a02e-a2e14d04e52d
  last_name: Mitrouskas
citation:
  ama: Falconi M, Lampart J, Leopold N, Mitrouskas DJ. Renormalized Bogoliubov theory
    for the Nelson model. <i>Annales de l’Institut Henri Poincaré C</i>. 2025. doi:<a
    href="https://doi.org/10.4171/aihpc/154">10.4171/aihpc/154</a>
  apa: Falconi, M., Lampart, J., Leopold, N., &#38; Mitrouskas, D. J. (2025). Renormalized
    Bogoliubov theory for the Nelson model. <i>Annales de l’Institut Henri Poincaré
    C</i>. EMS Press. <a href="https://doi.org/10.4171/aihpc/154">https://doi.org/10.4171/aihpc/154</a>
  chicago: Falconi, Marco, Jonas Lampart, Nikolai Leopold, and David Johannes Mitrouskas.
    “Renormalized Bogoliubov Theory for the Nelson Model.” <i>Annales de l’Institut
    Henri Poincaré C</i>. EMS Press, 2025. <a href="https://doi.org/10.4171/aihpc/154">https://doi.org/10.4171/aihpc/154</a>.
  ieee: M. Falconi, J. Lampart, N. Leopold, and D. J. Mitrouskas, “Renormalized Bogoliubov
    theory for the Nelson model,” <i>Annales de l’Institut Henri Poincaré C</i>. EMS
    Press, 2025.
  ista: Falconi M, Lampart J, Leopold N, Mitrouskas DJ. 2025. Renormalized Bogoliubov
    theory for the Nelson model. Annales de l’Institut Henri Poincaré C.
  mla: Falconi, Marco, et al. “Renormalized Bogoliubov Theory for the Nelson Model.”
    <i>Annales de l’Institut Henri Poincaré C</i>, EMS Press, 2025, doi:<a href="https://doi.org/10.4171/aihpc/154">10.4171/aihpc/154</a>.
  short: M. Falconi, J. Lampart, N. Leopold, D.J. Mitrouskas, Annales de l’Institut
    Henri Poincaré C (2025).
date_created: 2025-07-21T07:59:16Z
date_published: 2025-05-06T00:00:00Z
date_updated: 2025-12-30T07:31:09Z
day: '06'
department:
- _id: RoSe
doi: 10.4171/aihpc/154
external_id:
  arxiv:
  - '2305.06722'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2305.06722
month: '05'
oa: 1
oa_version: Preprint
publication: Annales de l'Institut Henri Poincaré C
publication_identifier:
  eissn:
  - 1873-1430
  issn:
  - 0294-1449
publication_status: epub_ahead
publisher: EMS Press
quality_controlled: '1'
status: public
title: Renormalized Bogoliubov theory for the Nelson model
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '20046'
abstract:
- lang: eng
  text: A Laplacian matrix is a real symmetric matrix whose row and column sums are
    zero. We investigate the limiting distribution of the largest eigenvalues of a
    Laplacian random matrix with Gaussian entries. Unlike many classical matrix ensembles,
    this random matrix model contains dependent entries. Our main results show that
    the extreme eigenvalues of this model exhibit Poisson statistics. In particular,
    after properly shifting and scaling, we show that the largest eigenvalue converges
    to the Gumbel distribution as the dimension of the matrix tends to infinity. While
    the largest diagonal entry is also shown to have Gumbel fluctuations, there is
    a rather surprising difference between its deterministic centering term and the
    centering term required for the largest eigenvalues.
acknowledgement: "The authors thank Santiago Arenas-Velilla and Victor Pérez-Abreu
  for comments on an earlier draft of this manuscript and for contributing Appendix
  A. The authors also thank Yan Fyodorov for providing useful references.\r\nA. Campbell
  was partially supported by the European Research Council Grant No. 101020331. K.
  Luh was supported in part by the Ralph E. Powe Junior Faculty Enhancement Award
  and Simons Foundation Grant MP-TSM-00001988. S. O’Rourke has been supported in part
  by NSF CAREER grant DMS-2143142. "
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Andrew J
  full_name: Campbell, Andrew J
  id: 582b06a9-1f1c-11ee-b076-82ffce00dde4
  last_name: Campbell
- first_name: Kyle
  full_name: Luh, Kyle
  last_name: Luh
- first_name: Sean
  full_name: O’Rourke, Sean
  last_name: O’Rourke
- first_name: Santiago
  full_name: Arenas-Velilla, Santiago
  last_name: Arenas-Velilla
- first_name: Victor
  full_name: Perez-Abreu, Victor
  last_name: Perez-Abreu
citation:
  ama: Campbell AJ, Luh K, O’Rourke S, Arenas-Velilla S, Perez-Abreu V. Extreme eigenvalues
    of Laplacian random matrices with Gaussian entries. <i>Electronic Journal of Probability</i>.
    2025;30:1-52. doi:<a href="https://doi.org/10.1214/25-ejp1366">10.1214/25-ejp1366</a>
  apa: Campbell, A. J., Luh, K., O’Rourke, S., Arenas-Velilla, S., &#38; Perez-Abreu,
    V. (2025). Extreme eigenvalues of Laplacian random matrices with Gaussian entries.
    <i>Electronic Journal of Probability</i>. Institute of Mathematical Statistics.
    <a href="https://doi.org/10.1214/25-ejp1366">https://doi.org/10.1214/25-ejp1366</a>
  chicago: Campbell, Andrew J, Kyle Luh, Sean O’Rourke, Santiago Arenas-Velilla, and
    Victor Perez-Abreu. “Extreme Eigenvalues of Laplacian Random Matrices with Gaussian
    Entries.” <i>Electronic Journal of Probability</i>. Institute of Mathematical
    Statistics, 2025. <a href="https://doi.org/10.1214/25-ejp1366">https://doi.org/10.1214/25-ejp1366</a>.
  ieee: A. J. Campbell, K. Luh, S. O’Rourke, S. Arenas-Velilla, and V. Perez-Abreu,
    “Extreme eigenvalues of Laplacian random matrices with Gaussian entries,” <i>Electronic
    Journal of Probability</i>, vol. 30. Institute of Mathematical Statistics, pp.
    1–52, 2025.
  ista: Campbell AJ, Luh K, O’Rourke S, Arenas-Velilla S, Perez-Abreu V. 2025. Extreme
    eigenvalues of Laplacian random matrices with Gaussian entries. Electronic Journal
    of Probability. 30, 1–52.
  mla: Campbell, Andrew J., et al. “Extreme Eigenvalues of Laplacian Random Matrices
    with Gaussian Entries.” <i>Electronic Journal of Probability</i>, vol. 30, Institute
    of Mathematical Statistics, 2025, pp. 1–52, doi:<a href="https://doi.org/10.1214/25-ejp1366">10.1214/25-ejp1366</a>.
  short: A.J. Campbell, K. Luh, S. O’Rourke, S. Arenas-Velilla, V. Perez-Abreu, Electronic
    Journal of Probability 30 (2025) 1–52.
corr_author: '1'
date_created: 2025-07-21T08:06:18Z
date_published: 2025-06-27T00:00:00Z
date_updated: 2025-09-30T14:07:19Z
day: '27'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1214/25-ejp1366
ec_funded: 1
external_id:
  arxiv:
  - '2211.17175'
  isi:
  - '001540927000024'
file:
- access_level: open_access
  checksum: a7a9f2bb7a6295786c16d4c7bd612621
  content_type: application/pdf
  creator: dernst
  date_created: 2025-07-23T08:35:53Z
  date_updated: 2025-07-23T08:35:53Z
  file_id: '20069'
  file_name: 2025_ElectronJourProbab_Campbell.pdf
  file_size: 580591
  relation: main_file
  success: 1
file_date_updated: 2025-07-23T08:35:53Z
has_accepted_license: '1'
intvolume: '        30'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 1-52
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
  call_identifier: H2020
  grant_number: '101020331'
  name: Random matrices beyond Wigner-Dyson-Mehta
publication: Electronic Journal of Probability
publication_identifier:
  eissn:
  - 1083-6489
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
status: public
title: Extreme eigenvalues of Laplacian random matrices with Gaussian entries
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 30
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20048'
abstract:
- lang: eng
  text: 'During embryonic development, cell behaviors need to be tightly regulated
    in time and space. Yet how the temporal and spatial regulations of cell behaviors
    are interconnected during embryonic development remains elusive. To address this,
    we turned to zebrafish gastrulation, the process whereby dynamic cell behaviors
    generate the three principal germ layers of the early embryo. Here, we show that
    Hoxb cluster genes are expressed in a temporally collinear manner at the blastoderm
    margin, where mesodermal and endodermal (mesendoderm) progenitor cells are specified
    and ingress to form mesendoderm/hypoblast. Functional analysis shows that these
    Hoxb genes regulate the timing of cell ingression: under- or overexpression of
    Hoxb genes perturb the timing of mesendoderm cell ingression and, consequently,
    the positioning of these cells along the forming anterior-posterior body axis
    after gastrulation. Finally, we found that Hoxb genes control the timing of mesendoderm
    ingression by regulating cellular bleb formation and cell surface fluctuations
    in the ingressing cells. Collectively, our findings suggest that Hoxb genes interconnect
    the temporal and spatial pattern of cell behaviors during zebrafish gastrulation
    by controlling cell surface fluctuations.'
acknowledgement: We thank all the Heisenberg lab members for discussions and comments
  on the manuscript, and the Bioimaging and Life Science facilities of ISTA for support
  with microscopy and fish maintenance, respectively. This study was funded by a Japan
  Society for the Promotion of Science (JSPS) Overseas Research Fellowship and a Japan
  Science and Technology Agency PRESTO grant (JPMJPR214B) to Y.M. Open Access funding
  provided by the Japan Science and Technology Agency. Deposited in PMC for immediate
  release.
article_number: dev204261
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Yuuta
  full_name: Moriyama, Yuuta
  id: addc9b8c-67a0-11f0-b374-a2e094825470
  last_name: Moriyama
  orcid: 0000-0002-2853-8051
- first_name: Toshiyuki
  full_name: Mitsui, Toshiyuki
  last_name: Mitsui
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
citation:
  ama: Moriyama Y, Mitsui T, Heisenberg C-PJ. Hoxb genes determine the timing of cell
    ingression by regulating cell surface fluctuations during zebrafish gastrulation.
    <i>Development</i>. 2025;152(12). doi:<a href="https://doi.org/10.1242/dev.204261">10.1242/dev.204261</a>
  apa: Moriyama, Y., Mitsui, T., &#38; Heisenberg, C.-P. J. (2025). Hoxb genes determine
    the timing of cell ingression by regulating cell surface fluctuations during zebrafish
    gastrulation. <i>Development</i>. The Company of Biologists. <a href="https://doi.org/10.1242/dev.204261">https://doi.org/10.1242/dev.204261</a>
  chicago: Moriyama, Yuuta, Toshiyuki Mitsui, and Carl-Philipp J Heisenberg. “Hoxb
    Genes Determine the Timing of Cell Ingression by Regulating Cell Surface Fluctuations
    during Zebrafish Gastrulation.” <i>Development</i>. The Company of Biologists,
    2025. <a href="https://doi.org/10.1242/dev.204261">https://doi.org/10.1242/dev.204261</a>.
  ieee: Y. Moriyama, T. Mitsui, and C.-P. J. Heisenberg, “Hoxb genes determine the
    timing of cell ingression by regulating cell surface fluctuations during zebrafish
    gastrulation,” <i>Development</i>, vol. 152, no. 12. The Company of Biologists,
    2025.
  ista: Moriyama Y, Mitsui T, Heisenberg C-PJ. 2025. Hoxb genes determine the timing
    of cell ingression by regulating cell surface fluctuations during zebrafish gastrulation.
    Development. 152(12), dev204261.
  mla: Moriyama, Yuuta, et al. “Hoxb Genes Determine the Timing of Cell Ingression
    by Regulating Cell Surface Fluctuations during Zebrafish Gastrulation.” <i>Development</i>,
    vol. 152, no. 12, dev204261, The Company of Biologists, 2025, doi:<a href="https://doi.org/10.1242/dev.204261">10.1242/dev.204261</a>.
  short: Y. Moriyama, T. Mitsui, C.-P.J. Heisenberg, Development 152 (2025).
corr_author: '1'
date_created: 2025-07-21T08:10:32Z
date_published: 2025-06-27T00:00:00Z
date_updated: 2025-09-30T14:07:51Z
day: '27'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.1242/dev.204261
external_id:
  isi:
  - '001525252300001'
  pmid:
  - '40576478'
file:
- access_level: open_access
  checksum: 808d8aa28df79d23fb661838d1fdc1be
  content_type: application/pdf
  creator: dernst
  date_created: 2025-07-23T08:43:01Z
  date_updated: 2025-07-23T08:43:01Z
  file_id: '20070'
  file_name: 2025_Development_Moriyama.pdf
  file_size: 25935563
  relation: main_file
  success: 1
file_date_updated: 2025-07-23T08:43:01Z
has_accepted_license: '1'
intvolume: '       152'
isi: 1
issue: '12'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: Development
publication_identifier:
  eissn:
  - 1477-9129
  issn:
  - 0950-1991
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Hoxb genes determine the timing of cell ingression by regulating cell surface
  fluctuations during zebrafish gastrulation
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 152
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20050'
abstract:
- lang: eng
  text: We prove upper bounds on the L∞-Wasserstein distance from optimal transport
    between strongly log-concave probability densities and log-Lipschitz perturbations.
    In the simplest setting, such a bound amounts to a transport-information inequality
    involving the L∞-Wasserstein metric and the relative L∞-Fisher information. We
    show that this inequality can be sharpened significantly in situations where the
    involved densities are anisotropic. Our proof is based on probabilistic techniques
    using Langevin dynamics. As an application of these results, we obtain sharp exponential
    rates of convergence in Fisher’s infinitesimal model from quantitative genetics,
    generalising recent results by Calvez, Poyato, and Santambrogio in dimension 1
    to arbitrary dimensions.
acknowledgement: This research was funded in part by the Austrian Science Fund (FWF)
  project 10.55776/F65 and the Austrian Academy of Science, DOC fellowship nr. 26293.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Kseniia
  full_name: Khudiakova, Kseniia
  id: 4E6DC800-AE37-11E9-AC72-31CAE5697425
  last_name: Khudiakova
  orcid: 0000-0002-6246-1465
- first_name: Jan
  full_name: Maas, Jan
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Francesco
  full_name: Pedrotti, Francesco
  id: d3ac8ac6-dc8d-11ea-abe3-e2a9628c4c3c
  last_name: Pedrotti
citation:
  ama: Khudiakova K, Maas J, Pedrotti F. L∞-optimal transport of anisotropic log-concave
    measures and exponential convergence in Fisher’s infinitesimal model. <i>The Annals
    of Applied Probability</i>. 2025;35(3):1913-1940. doi:<a href="https://doi.org/10.1214/25-aap2162">10.1214/25-aap2162</a>
  apa: Khudiakova, K., Maas, J., &#38; Pedrotti, F. (2025). L∞-optimal transport of
    anisotropic log-concave measures and exponential convergence in Fisher’s infinitesimal
    model. <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics.
    <a href="https://doi.org/10.1214/25-aap2162">https://doi.org/10.1214/25-aap2162</a>
  chicago: Khudiakova, Kseniia, Jan Maas, and Francesco Pedrotti. “L∞-Optimal Transport
    of Anisotropic Log-Concave Measures and Exponential Convergence in Fisher’s Infinitesimal
    Model.” <i>The Annals of Applied Probability</i>. Institute of Mathematical Statistics,
    2025. <a href="https://doi.org/10.1214/25-aap2162">https://doi.org/10.1214/25-aap2162</a>.
  ieee: K. Khudiakova, J. Maas, and F. Pedrotti, “L∞-optimal transport of anisotropic
    log-concave measures and exponential convergence in Fisher’s infinitesimal model,”
    <i>The Annals of Applied Probability</i>, vol. 35, no. 3. Institute of Mathematical
    Statistics, pp. 1913–1940, 2025.
  ista: Khudiakova K, Maas J, Pedrotti F. 2025. L∞-optimal transport of anisotropic
    log-concave measures and exponential convergence in Fisher’s infinitesimal model.
    The Annals of Applied Probability. 35(3), 1913–1940.
  mla: Khudiakova, Kseniia, et al. “L∞-Optimal Transport of Anisotropic Log-Concave
    Measures and Exponential Convergence in Fisher’s Infinitesimal Model.” <i>The
    Annals of Applied Probability</i>, vol. 35, no. 3, Institute of Mathematical Statistics,
    2025, pp. 1913–40, doi:<a href="https://doi.org/10.1214/25-aap2162">10.1214/25-aap2162</a>.
  short: K. Khudiakova, J. Maas, F. Pedrotti, The Annals of Applied Probability 35
    (2025) 1913–1940.
corr_author: '1'
date_created: 2025-07-21T08:13:54Z
date_published: 2025-06-01T00:00:00Z
date_updated: 2025-09-30T14:12:48Z
day: '01'
department:
- _id: JaMa
doi: 10.1214/25-aap2162
external_id:
  arxiv:
  - '2402.04151'
  isi:
  - '001523520000012'
intvolume: '        35'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2402.04151
month: '06'
oa: 1
oa_version: Preprint
page: 1913-1940
project:
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
- _id: 34d33d68-11ca-11ed-8bc3-ec13763c0ca8
  grant_number: '26293'
  name: The impact of deleterious mutations on small populations
publication: The Annals of Applied Probability
publication_identifier:
  issn:
  - 1050-5164
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
related_material:
  record:
  - id: '17352'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: L∞-optimal transport of anisotropic log-concave measures and exponential convergence
  in Fisher’s infinitesimal model
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 35
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20051'
abstract:
- lang: eng
  text: "We revisit the majority problem in the population protocol communication
    model, as first studied by Angluin et al. (Distributed Computing 2008). We consider
    a more general version of this problem known as plurality consensus, which has
    already been studied intensively in the literature. In this problem, each node
    in a system of n nodes, has initially one of k different opinions, and they need
    to agree on the (relative) majority opinion. In particular, we consider the important
    and intensively studied model of Undecided State Dynamics.\r\nOur main contribution
    is an almost tight lower bound on the stabilization time: we prove that there
    exists an initial configuration, even with bias \\Delta = \\omega(\\sqrt{n\\log
    n}), where stabilization requires \\Omega(kn\\log \\frac {\\sqrt n} {k \\log n})
    interactions, or equivalently, \\Omega(k\\log \\frac {\\sqrt n} {k \\log n}) parallel
    time for any k = o\\left(\\frac {\\sqrt n}{\\log n}\\right). This bound is tight
    for any k \\le n^{\\frac 1 2 - \\epsilon}, where \\epsilon >0 can be any small
    constant, as Amir et al.~(PODC'23) gave a O(k\\log n) parallel time upper bound
    for k = O\\left(\\frac {\\sqrt n} {\\log ^2 n}\\right)."
acknowledgement: "This project has received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (MoDynStruct, No. 101019564) and the Austrian Science Fund (FWF) grant DOI 10.55776/I5862,grant
  DOI 10.55776/I5982, and grant DOI 10.55776/P33775 with\r\nadditional funding from
  the netidee SCIENCE Stiftung, 2020–2024\r\nand the German Research Foundation (DFG),
  grant 470029389\r\n(FlexNets)."
article_processing_charge: Yes (via OA deal)
arxiv: 1
author:
- first_name: Antoine
  full_name: El-Hayek, Antoine
  id: 888a098e-fcac-11ee-aff7-d347be57b725
  last_name: El-Hayek
  orcid: 0000-0003-4268-7368
- first_name: Robert
  full_name: Elsässer, Robert
  last_name: Elsässer
- first_name: Stefan
  full_name: Schmid, Stefan
  last_name: Schmid
citation:
  ama: 'El-Hayek A, Elsässer R, Schmid S. An almost tight lower bound for plurality
    consensus with undecided state dynamics in the population protocol model. In:
    <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>.
    Association for Computing Machinery; 2025. doi:<a href="https://doi.org/10.1145/3732772.3733505">10.1145/3732772.3733505</a>'
  apa: 'El-Hayek, A., Elsässer, R., &#38; Schmid, S. (2025). An almost tight lower
    bound for plurality consensus with undecided state dynamics in the population
    protocol model. In <i>Proceedings of the ACM Symposium on Principles of Distributed
    Computing</i>. Huatulco, Mexico: Association for Computing Machinery. <a href="https://doi.org/10.1145/3732772.3733505">https://doi.org/10.1145/3732772.3733505</a>'
  chicago: El-Hayek, Antoine, Robert Elsässer, and Stefan Schmid. “An Almost Tight
    Lower Bound for Plurality Consensus with Undecided State Dynamics in the Population
    Protocol Model.” In <i>Proceedings of the ACM Symposium on Principles of Distributed
    Computing</i>. Association for Computing Machinery, 2025. <a href="https://doi.org/10.1145/3732772.3733505">https://doi.org/10.1145/3732772.3733505</a>.
  ieee: A. El-Hayek, R. Elsässer, and S. Schmid, “An almost tight lower bound for
    plurality consensus with undecided state dynamics in the population protocol model,”
    in <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>,
    Huatulco, Mexico, 2025.
  ista: 'El-Hayek A, Elsässer R, Schmid S. 2025. An almost tight lower bound for plurality
    consensus with undecided state dynamics in the population protocol model. Proceedings
    of the ACM Symposium on Principles of Distributed Computing. PODC: Symposium on
    Principles of Distributed Computing.'
  mla: El-Hayek, Antoine, et al. “An Almost Tight Lower Bound for Plurality Consensus
    with Undecided State Dynamics in the Population Protocol Model.” <i>Proceedings
    of the ACM Symposium on Principles of Distributed Computing</i>, Association for
    Computing Machinery, 2025, doi:<a href="https://doi.org/10.1145/3732772.3733505">10.1145/3732772.3733505</a>.
  short: A. El-Hayek, R. Elsässer, S. Schmid, in:, Proceedings of the ACM Symposium
    on Principles of Distributed Computing, Association for Computing Machinery, 2025.
conference:
  end_date: 2025-06-20
  location: Huatulco, Mexico
  name: 'PODC: Symposium on Principles of Distributed Computing'
  start_date: 2025-06-16
corr_author: '1'
date_created: 2025-07-21T08:16:15Z
date_published: 2025-06-13T00:00:00Z
date_updated: 2025-10-16T13:08:45Z
day: '13'
ddc:
- '000'
department:
- _id: MoHe
doi: 10.1145/3732772.3733505
ec_funded: 1
external_id:
  arxiv:
  - '2505.02765'
  isi:
  - '001525534800066'
file:
- access_level: open_access
  checksum: 52976d226f3f691aa519d71c1c718fa5
  content_type: application/pdf
  creator: dernst
  date_created: 2025-08-04T09:10:55Z
  date_updated: 2025-08-04T09:10:55Z
  file_id: '20115'
  file_name: 2025_PODC_ElHayek.pdf
  file_size: 2200347
  relation: main_file
  success: 1
file_date_updated: 2025-08-04T09:10:55Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
  call_identifier: H2020
  grant_number: '101019564'
  name: The design and evaluation of modern fully dynamic data structures
- _id: bda196b2-d553-11ed-ba76-8e8ee6c21103
  grant_number: I05982
  name: Static and Dynamic Hierarchical Graph Decompositions
- _id: bd9e3a2e-d553-11ed-ba76-8aa684ce17fe
  grant_number: P33775
  name: Fast Algorithms for a Reactive Network Layer
publication: Proceedings of the ACM Symposium on Principles of Distributed Computing
publication_identifier:
  isbn:
  - ' 9798400718854'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
status: public
title: An almost tight lower bound for plurality consensus with undecided state dynamics
  in the population protocol model
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20052'
abstract:
- lang: eng
  text: "This paper revisits a fundamental distributed computing problem in the population
    protocol model. Provided n agents each starting with an input color in [k], the
    relative majority problem asks to find the predominant color. In the population
    protocol model, at each time step, a scheduler selects two agents that first learn
    each other's states and then update their states based on what they learned.\r\nWe
    present the Circles protocol that solves the relative majority problem with k3
    states. It is always-correct under weakly fair scheduling. Not only does it improve
    upon the best known upper bound of O(k7), but it also shows a strikingly simpler
    design inspired by energy minimization in chemical settings."
acknowledgement: 'This project has received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (MoDynStruct, No. 101019564) and the Austrian Science Fund (FWF) grant DOI 10.55776/I5982,
  and grant DOI 10.55776/P33775 with additional funding from the netidee SCIENCE Stiftung,
  2020–2024 and the German Research Foundation (DFG), grant 470029389 (FlexNets). '
article_processing_charge: No
author:
- first_name: Tom-Lukas
  full_name: Breitkopf, Tom-Lukas
  last_name: Breitkopf
- first_name: Julien
  full_name: Dallot, Julien
  last_name: Dallot
- first_name: Antoine
  full_name: El-Hayek, Antoine
  id: 888a098e-fcac-11ee-aff7-d347be57b725
  last_name: El-Hayek
  orcid: 0000-0003-4268-7368
- first_name: Stefan
  full_name: Schmid, Stefan
  last_name: Schmid
citation:
  ama: 'Breitkopf T-L, Dallot J, El-Hayek A, Schmid S. Brief announcement: Minimizing
    energy solves relative majority with a cubic number of states in population protocols.
    In: <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>.
    Association for Computing Machinery; 2025:549-552. doi:<a href="https://doi.org/10.1145/3732772.3733512">10.1145/3732772.3733512</a>'
  apa: 'Breitkopf, T.-L., Dallot, J., El-Hayek, A., &#38; Schmid, S. (2025). Brief
    announcement: Minimizing energy solves relative majority with a cubic number of
    states in population protocols. In <i>Proceedings of the ACM Symposium on Principles
    of Distributed Computing</i> (pp. 549–552). Huatulco, Mexico: Association for
    Computing Machinery. <a href="https://doi.org/10.1145/3732772.3733512">https://doi.org/10.1145/3732772.3733512</a>'
  chicago: 'Breitkopf, Tom-Lukas, Julien Dallot, Antoine El-Hayek, and Stefan Schmid.
    “Brief Announcement: Minimizing Energy Solves Relative Majority with a Cubic Number
    of States in Population Protocols.” In <i>Proceedings of the ACM Symposium on
    Principles of Distributed Computing</i>, 549–52. Association for Computing Machinery,
    2025. <a href="https://doi.org/10.1145/3732772.3733512">https://doi.org/10.1145/3732772.3733512</a>.'
  ieee: 'T.-L. Breitkopf, J. Dallot, A. El-Hayek, and S. Schmid, “Brief announcement:
    Minimizing energy solves relative majority with a cubic number of states in population
    protocols,” in <i>Proceedings of the ACM Symposium on Principles of Distributed
    Computing</i>, Huatulco, Mexico, 2025, pp. 549–552.'
  ista: 'Breitkopf T-L, Dallot J, El-Hayek A, Schmid S. 2025. Brief announcement:
    Minimizing energy solves relative majority with a cubic number of states in population
    protocols. Proceedings of the ACM Symposium on Principles of Distributed Computing.
    PODC: Symposium on Principles of Distributed Computing, 549–552.'
  mla: 'Breitkopf, Tom-Lukas, et al. “Brief Announcement: Minimizing Energy Solves
    Relative Majority with a Cubic Number of States in Population Protocols.” <i>Proceedings
    of the ACM Symposium on Principles of Distributed Computing</i>, Association for
    Computing Machinery, 2025, pp. 549–52, doi:<a href="https://doi.org/10.1145/3732772.3733512">10.1145/3732772.3733512</a>.'
  short: T.-L. Breitkopf, J. Dallot, A. El-Hayek, S. Schmid, in:, Proceedings of the
    ACM Symposium on Principles of Distributed Computing, Association for Computing
    Machinery, 2025, pp. 549–552.
conference:
  end_date: 2025-06-20
  location: Huatulco, Mexico
  name: 'PODC: Symposium on Principles of Distributed Computing'
  start_date: 2025-06-16
corr_author: '1'
date_created: 2025-07-21T08:17:04Z
date_published: 2025-06-13T00:00:00Z
date_updated: 2026-02-16T11:46:37Z
day: '13'
ddc:
- '000'
department:
- _id: MoHe
doi: 10.1145/3732772.3733512
ec_funded: 1
external_id:
  isi:
  - '001525534800069'
file:
- access_level: open_access
  checksum: e99679ffb28877b7cea4d54860302790
  content_type: application/pdf
  creator: dernst
  date_created: 2025-08-05T07:32:01Z
  date_updated: 2025-08-05T07:32:01Z
  file_id: '20123'
  file_name: 2025_PODC_Breitkopf.pdf
  file_size: 549706
  relation: main_file
  success: 1
file_date_updated: 2025-08-05T07:32:01Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 549-552
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
  call_identifier: H2020
  grant_number: '101019564'
  name: The design and evaluation of modern fully dynamic data structures
- _id: bda196b2-d553-11ed-ba76-8e8ee6c21103
  grant_number: I05982
  name: Static and Dynamic Hierarchical Graph Decompositions
- _id: bd9e3a2e-d553-11ed-ba76-8aa684ce17fe
  grant_number: P33775
  name: Fast Algorithms for a Reactive Network Layer
publication: Proceedings of the ACM Symposium on Principles of Distributed Computing
publication_identifier:
  isbn:
  - '9798400718854'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
status: public
title: 'Brief announcement: Minimizing energy solves relative majority with a cubic
  number of states in population protocols'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20053'
abstract:
- lang: eng
  text: "Liquid democracy is a transitive vote delegation mechanism over voting graphs.
    It enables each voter to delegate their vote(s) to another better-informed voter,
    with the goal of collectively making a better decision. The question of whether
    liquid democracy outperforms direct voting has been previously studied in the
    context of local delegation mechanisms (where voters can only delegate to someone
    in their neighbourhood) and binary decision problems. It has previously been shown
    that it is impossible for local delegation mechanisms to outperform direct voting
    in general graphs. This raises the question: for which classes of graphs do local
    delegation mechanisms yield good results?\r\nIn this work, we analyse (1) properties
    of specific graphs and (2) properties of local delegation mechanisms on these
    graphs, determining where local delegation actually outperforms direct voting.
    We show that a critical graph property enabling liquid democracy is that the voting
    outcome of local delegation mechanisms preserves a sufficient amount of variance,
    thereby avoiding situations where delegation falls behind direct voting1. These
    insights allow us to prove our main results, namely that there exist local delegation
    mechanisms that perform no worse and in fact quantitatively better than direct
    voting in natural graph topologies like complete, random d-regular, and bounded
    degree graphs, lending a more nuanced perspective to previous impossibility results."
acknowledgement: This work was partially supported by MOE-T2EP20122-0014 (DataDriven
  Distributed Algorithms), German Research Foundation (DFG) project ReNO (SPP 2378)
  from 2023-2027, ERC CoG 863818 (ForMSMArt) and Austrian Science Fund (FWF) 10.55776/COE12.
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Seth
  full_name: Gilbert, Seth
  last_name: Gilbert
- first_name: Stefan
  full_name: Schmid, Stefan
  last_name: Schmid
- first_name: Jakub
  full_name: Svoboda, Jakub
  id: 130759D2-D7DD-11E9-87D2-DE0DE6697425
  last_name: Svoboda
  orcid: 0000-0002-1419-3267
- first_name: Michelle X
  full_name: Yeo, Michelle X
  id: 2D82B818-F248-11E8-B48F-1D18A9856A87
  last_name: Yeo
  orcid: 0009-0001-3676-4809
citation:
  ama: 'Chatterjee K, Gilbert S, Schmid S, Svoboda J, Yeo MX. When is liquid democracy
    possible?: On the manipulation of variance. In: <i>Proceedings of the ACM Symposium
    on Principles of Distributed Computing</i>. Association for Computing Machinery;
    2025:241-251. doi:<a href="https://doi.org/10.1145/3732772.3733544">10.1145/3732772.3733544</a>'
  apa: 'Chatterjee, K., Gilbert, S., Schmid, S., Svoboda, J., &#38; Yeo, M. X. (2025).
    When is liquid democracy possible?: On the manipulation of variance. In <i>Proceedings
    of the ACM Symposium on Principles of Distributed Computing</i> (pp. 241–251).
    Huatulco, Mexico: Association for Computing Machinery. <a href="https://doi.org/10.1145/3732772.3733544">https://doi.org/10.1145/3732772.3733544</a>'
  chicago: 'Chatterjee, Krishnendu, Seth Gilbert, Stefan Schmid, Jakub Svoboda, and
    Michelle X Yeo. “When Is Liquid Democracy Possible?: On the Manipulation of Variance.”
    In <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>,
    241–51. Association for Computing Machinery, 2025. <a href="https://doi.org/10.1145/3732772.3733544">https://doi.org/10.1145/3732772.3733544</a>.'
  ieee: 'K. Chatterjee, S. Gilbert, S. Schmid, J. Svoboda, and M. X. Yeo, “When is
    liquid democracy possible?: On the manipulation of variance,” in <i>Proceedings
    of the ACM Symposium on Principles of Distributed Computing</i>, Huatulco, Mexico,
    2025, pp. 241–251.'
  ista: 'Chatterjee K, Gilbert S, Schmid S, Svoboda J, Yeo MX. 2025. When is liquid
    democracy possible?: On the manipulation of variance. Proceedings of the ACM Symposium
    on Principles of Distributed Computing. PODC: Symposium on Principles of Distributed
    Computing, 241–251.'
  mla: 'Chatterjee, Krishnendu, et al. “When Is Liquid Democracy Possible?: On the
    Manipulation of Variance.” <i>Proceedings of the ACM Symposium on Principles of
    Distributed Computing</i>, Association for Computing Machinery, 2025, pp. 241–51,
    doi:<a href="https://doi.org/10.1145/3732772.3733544">10.1145/3732772.3733544</a>.'
  short: K. Chatterjee, S. Gilbert, S. Schmid, J. Svoboda, M.X. Yeo, in:, Proceedings
    of the ACM Symposium on Principles of Distributed Computing, Association for Computing
    Machinery, 2025, pp. 241–251.
conference:
  end_date: 2025-06-20
  location: Huatulco, Mexico
  name: 'PODC: Symposium on Principles of Distributed Computing'
  start_date: 2025-06-16
corr_author: '1'
date_created: 2025-07-21T08:18:26Z
date_published: 2025-06-13T00:00:00Z
date_updated: 2026-02-16T11:46:51Z
day: '13'
ddc:
- '000'
department:
- _id: KrCh
- _id: KrPi
doi: 10.1145/3732772.3733544
ec_funded: 1
external_id:
  isi:
  - '001525534800030'
file:
- access_level: open_access
  checksum: cd628fe54d96e9fc6cc789bb8145422b
  content_type: application/pdf
  creator: dernst
  date_created: 2025-08-05T07:15:31Z
  date_updated: 2025-08-05T07:15:31Z
  file_id: '20122'
  file_name: 2025_PODC_Chatterjee.pdf
  file_size: 783297
  relation: main_file
  success: 1
file_date_updated: 2025-08-05T07:15:31Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2025/745
month: '06'
oa: 1
oa_version: Published Version
page: 241-251
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: Proceedings of the ACM Symposium on Principles of Distributed Computing
publication_identifier:
  isbn:
  - '9798400718854'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
status: public
title: 'When is liquid democracy possible?: On the manipulation of variance'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
_id: '20054'
article_number: '220'
article_processing_charge: No
author:
- first_name: Sharona
  full_name: Horta, Sharona
  id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc
  last_name: Horta
citation:
  ama: 'Horta S. Solid state diffusion in metal-semiconductors core-shell nanoparticle.
    In: <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Fundació de la comunitat
    valenciana SCITO; 2025. doi:<a href="https://doi.org/10.29363/nanoge.matsusspring.2025.220">10.29363/nanoge.matsusspring.2025.220</a>'
  apa: 'Horta, S. (2025). Solid state diffusion in metal-semiconductors core-shell
    nanoparticle. In <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Sevilla,
    Spain: Fundació de la comunitat valenciana SCITO. <a href="https://doi.org/10.29363/nanoge.matsusspring.2025.220">https://doi.org/10.29363/nanoge.matsusspring.2025.220</a>'
  chicago: Horta, Sharona. “Solid State Diffusion in Metal-Semiconductors Core-Shell
    Nanoparticle.” In <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Fundació
    de la comunitat valenciana SCITO, 2025. <a href="https://doi.org/10.29363/nanoge.matsusspring.2025.220">https://doi.org/10.29363/nanoge.matsusspring.2025.220</a>.
  ieee: S. Horta, “Solid state diffusion in metal-semiconductors core-shell nanoparticle,”
    in <i>Proceedings of the MATSUS Spring 2025 Conference</i>, Sevilla, Spain, 2025.
  ista: 'Horta S. 2025. Solid state diffusion in metal-semiconductors core-shell nanoparticle.
    Proceedings of the MATSUS Spring 2025 Conference. MATSUS: Materials for Sustainable
    Development Conference, 220.'
  mla: Horta, Sharona. “Solid State Diffusion in Metal-Semiconductors Core-Shell Nanoparticle.”
    <i>Proceedings of the MATSUS Spring 2025 Conference</i>, 220, Fundació de la comunitat
    valenciana SCITO, 2025, doi:<a href="https://doi.org/10.29363/nanoge.matsusspring.2025.220">10.29363/nanoge.matsusspring.2025.220</a>.
  short: S. Horta, in:, Proceedings of the MATSUS Spring 2025 Conference, Fundació
    de la comunitat valenciana SCITO, 2025.
conference:
  end_date: 2025-03-07
  location: Sevilla, Spain
  name: 'MATSUS: Materials for Sustainable Development Conference'
  start_date: 2025-03-03
corr_author: '1'
date_created: 2025-07-21T08:22:29Z
date_published: 2025-03-03T00:00:00Z
date_updated: 2025-09-23T09:04:03Z
day: '03'
department:
- _id: MaIb
doi: 10.29363/nanoge.matsusspring.2025.220
language:
- iso: eng
month: '03'
oa_version: None
publication: Proceedings of the MATSUS Spring 2025 Conference
publication_status: published
publisher: Fundació de la comunitat valenciana SCITO
quality_controlled: '1'
status: public
title: Solid state diffusion in metal-semiconductors core-shell nanoparticle
type: conference_abstract
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_type: closed access
_id: '20055'
abstract:
- lang: eng
  text: Supercrystals represent three-dimensional orderings of colloidal nanocrystals
    (NCs), showcasing collective properties in photonics, phononics, and electronics
    applications.1,2 Recent studies have shown that such assemblies are directly produced
    during nanocrystal reactions.3–6 However, a fundamental understanding of in situ
    formed supercrystals that withstand typical NC purification processes remains
    underexplored, which is important for further use. Herein, we report the reaction
    precursor-mediated formation of stable PbTe supercrystals. Rationalizing the formation
    of these assemblies through small-angle x-ray scattering (SAXS) measurements,
    we unveil their formation mechanism. Our findings reveal that the supercrystal
    formation occurs in the presence of an excess of lead oleates in the crude solution.
    It should be noted that the formed supercrystals can be stabilized under specific
    conditions determined by the lead oleate cluster concentration, content of trioctylphosphine
    telluride (TOP-Te), NC size and the need of an annealing step at mild conditions.
    Furthermore, this approach allows for the continuous growth of a secondary phase
    within the supercrystal; for example in the case of PbTe supercrystals, a PbS
    shell can be grown on each PbTe NC constituent, resulting in core-shell PbTe-PbS
    supercrystals. Our work elucidates that reaction precursors play an important
    role in in situ SC formation and stabilization, implying the possibility of applying
    this knowledge to other NC reactions.
acknowledged_ssus:
- _id: EM-Fac
- _id: NMR
- _id: LifeSc
acknowledgement: ISTA and the Werner Siemens Foundation financially supported this
  work. The Scientific Service Units (SSU) of ISTA supported this research through
  resources provided by the Electron Microscopy Facility (EMF), NMR Facility and the
  Lab Support Facility (LSF).
article_number: '173'
article_processing_charge: No
author:
- first_name: Seungho
  full_name: Lee, Seungho
  id: BB243B88-D767-11E9-B658-BC13E6697425
  last_name: Lee
  orcid: 0000-0002-6962-8598
- first_name: Daniel
  full_name: Balazs, Daniel
  id: 302BADF6-85FC-11EA-9E3B-B9493DDC885E
  last_name: Balazs
  orcid: 0000-0001-7597-043X
- first_name: Sharona
  full_name: Horta, Sharona
  id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc
  last_name: Horta
- first_name: Aiswarya
  full_name: Rayaroth Puthiyaveettil, Aiswarya
  id: 8aceb01b-8972-11ed-ae7b-d5fe53775add
  last_name: Rayaroth Puthiyaveettil
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
citation:
  ama: 'Lee S, Balazs D, Horta S, Rayaroth Puthiyaveettil A, Ibáñez M. Reaction precursor-mediated
    formation of stable supercrystals in colloidal nanocrystal synthesis: PbTe case.
    In: <i>Proceedings of the MATSUS Spring 2025 Conference</i>. Fundació de la comunitat
    valenciana SCITO; 2025. doi:<a href="https://doi.org/10.29363/nanoge.matsusspring.2025.173">10.29363/nanoge.matsusspring.2025.173</a>'
  apa: 'Lee, S., Balazs, D., Horta, S., Rayaroth Puthiyaveettil, A., &#38; Ibáñez,
    M. (2025). Reaction precursor-mediated formation of stable supercrystals in colloidal
    nanocrystal synthesis: PbTe case. In <i>Proceedings of the MATSUS Spring 2025
    Conference</i>. Sevilla, Spain: Fundació de la comunitat valenciana SCITO. <a
    href="https://doi.org/10.29363/nanoge.matsusspring.2025.173">https://doi.org/10.29363/nanoge.matsusspring.2025.173</a>'
  chicago: 'Lee, Seungho, Daniel Balazs, Sharona Horta, Aiswarya Rayaroth Puthiyaveettil,
    and Maria Ibáñez. “Reaction Precursor-Mediated Formation of Stable Supercrystals
    in Colloidal Nanocrystal Synthesis: PbTe Case.” In <i>Proceedings of the MATSUS
    Spring 2025 Conference</i>. Fundació de la comunitat valenciana SCITO, 2025. <a
    href="https://doi.org/10.29363/nanoge.matsusspring.2025.173">https://doi.org/10.29363/nanoge.matsusspring.2025.173</a>.'
  ieee: 'S. Lee, D. Balazs, S. Horta, A. Rayaroth Puthiyaveettil, and M. Ibáñez, “Reaction
    precursor-mediated formation of stable supercrystals in colloidal nanocrystal
    synthesis: PbTe case,” in <i>Proceedings of the MATSUS Spring 2025 Conference</i>,
    Sevilla, Spain, 2025.'
  ista: 'Lee S, Balazs D, Horta S, Rayaroth Puthiyaveettil A, Ibáñez M. 2025. Reaction
    precursor-mediated formation of stable supercrystals in colloidal nanocrystal
    synthesis: PbTe case. Proceedings of the MATSUS Spring 2025 Conference. MATSUS:
    Materials for Sustainable Development Conference, 173.'
  mla: 'Lee, Seungho, et al. “Reaction Precursor-Mediated Formation of Stable Supercrystals
    in Colloidal Nanocrystal Synthesis: PbTe Case.” <i>Proceedings of the MATSUS Spring
    2025 Conference</i>, 173, Fundació de la comunitat valenciana SCITO, 2025, doi:<a
    href="https://doi.org/10.29363/nanoge.matsusspring.2025.173">10.29363/nanoge.matsusspring.2025.173</a>.'
  short: S. Lee, D. Balazs, S. Horta, A. Rayaroth Puthiyaveettil, M. Ibáñez, in:,
    Proceedings of the MATSUS Spring 2025 Conference, Fundació de la comunitat valenciana
    SCITO, 2025.
conference:
  end_date: 2025-03-07
  location: Sevilla, Spain
  name: 'MATSUS: Materials for Sustainable Development Conference'
  start_date: 2025-03-03
corr_author: '1'
date_created: 2025-07-21T08:33:20Z
date_published: 2025-03-15T00:00:00Z
date_updated: 2026-02-19T09:25:57Z
day: '15'
department:
- _id: MaIb
- _id: LifeSc
doi: 10.29363/nanoge.matsusspring.2025.173
language:
- iso: eng
month: '03'
oa_version: None
project:
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
  name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
    Semiconductors for Waste Heat Recovery'
publication: Proceedings of the MATSUS Spring 2025 Conference
publication_status: published
publisher: Fundació de la comunitat valenciana SCITO
quality_controlled: '1'
status: public
title: 'Reaction precursor-mediated formation of stable supercrystals in colloidal
  nanocrystal synthesis: PbTe case'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20056'
abstract:
- lang: eng
  text: Theoretical studies have shown that stochasticity can affect the dynamics
    of ecosystems in counterintuitive ways. However, without knowing the equations
    governing the dynamics of populations or ecosystems, it is difficult to ascertain
    the role of stochasticity in real datasets. Therefore, the inverse problem of
    inferring the governing stochastic equations from datasets is important. Here,
    we present an equation discovery methodology that takes time series data of state
    variables as input and outputs a stochastic differential equation. We achieve
    this by combining traditional approaches from stochastic calculus with the equation
    discovery techniques. We demonstrate the generality of the method via several
    applications. First, we deliberately choose various stochastic models with fundamentally
    different governing equations, yet they produce nearly identical steady-state
    distributions. We show that we can recover the correct underlying equations, and
    thus infer the structure of their stability, accurately from the analysis of time
    series data alone. We demonstrate our method on two real-world datasets—fish schooling
    and single-cell migration—that have vastly different spatiotemporal scales and
    dynamics. We illustrate various limitations and potential pitfalls of the method
    and how to overcome them via diagnostic measures. Finally, we provide our open-source
    code via a package named PyDaDDy (Python Library for Data-Driven Dynamics).
acknowledgement: V.G. acknowledges support from the Science and Engi-neering Research
  Board, Department of Biotechnology,and the Indo-French Centre for the Promotion
  of Ad-vanced Research (64T4-1). D.R.M. acknowledges supportfrom a Department of
  Science and Technology (DST) In-novation in Science Pursuit for Inspired Research
  (IN-SPIRE) Faculty Award. J.J. acknowledges support froma Humboldt postdoctoral
  fellowship and the Heidelber-ger Akademie der Wissenschaften, Heidelberg, Germany.D.B.B.
  acknowledges support from the NOMIS Founda-tion and an European Molecular Biology
  Organization(EMBO) postdoctoral fellowship (ALTF 343-2022). A.N.and S.P. acknowledge
  support from Ministry of Educa-tion (MoE) PhD fellowships. We thank Ashrit Mangal-wedhekar,
  Vivek Jadhav, Shikhara Bhat, Cassandre Aimon,and Harishankar Muppirala for comments
  on the manu-script and code. We thank Kollegala Sharma for his inputon the Kannada
  translation of the title and abstract.Data-Driven Model Discovery E115
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Arshed
  full_name: Nabeel, Arshed
  last_name: Nabeel
- first_name: Ashwin
  full_name: Karichannavar, Ashwin
  last_name: Karichannavar
- first_name: Shuaib
  full_name: Palathingal, Shuaib
  last_name: Palathingal
- first_name: Jitesh
  full_name: Jhawar, Jitesh
  last_name: Jhawar
- first_name: David
  full_name: Brückner, David
  id: e1e86031-6537-11eb-953a-f7ab92be508d
  last_name: Brückner
  orcid: 0000-0001-7205-2975
- first_name: Danny
  full_name: Raj M, Danny
  last_name: Raj M
- first_name: Vishwesha
  full_name: Guttal, Vishwesha
  last_name: Guttal
citation:
  ama: Nabeel A, Karichannavar A, Palathingal S, et al. Discovering stochastic dynamical
    equations from ecological time series data. <i>The American Naturalist</i>. 2025;205(4):E100-E117.
    doi:<a href="https://doi.org/10.1086/734083">10.1086/734083</a>
  apa: Nabeel, A., Karichannavar, A., Palathingal, S., Jhawar, J., Brückner, D., Raj
    M, D., &#38; Guttal, V. (2025). Discovering stochastic dynamical equations from
    ecological time series data. <i>The American Naturalist</i>. University of Chicago
    Press. <a href="https://doi.org/10.1086/734083">https://doi.org/10.1086/734083</a>
  chicago: Nabeel, Arshed, Ashwin Karichannavar, Shuaib Palathingal, Jitesh Jhawar,
    David Brückner, Danny Raj M, and Vishwesha Guttal. “Discovering Stochastic Dynamical
    Equations from Ecological Time Series Data.” <i>The American Naturalist</i>. University
    of Chicago Press, 2025. <a href="https://doi.org/10.1086/734083">https://doi.org/10.1086/734083</a>.
  ieee: A. Nabeel <i>et al.</i>, “Discovering stochastic dynamical equations from
    ecological time series data,” <i>The American Naturalist</i>, vol. 205, no. 4.
    University of Chicago Press, pp. E100–E117, 2025.
  ista: Nabeel A, Karichannavar A, Palathingal S, Jhawar J, Brückner D, Raj M D, Guttal
    V. 2025. Discovering stochastic dynamical equations from ecological time series
    data. The American Naturalist. 205(4), E100–E117.
  mla: Nabeel, Arshed, et al. “Discovering Stochastic Dynamical Equations from Ecological
    Time Series Data.” <i>The American Naturalist</i>, vol. 205, no. 4, University
    of Chicago Press, 2025, pp. E100–17, doi:<a href="https://doi.org/10.1086/734083">10.1086/734083</a>.
  short: A. Nabeel, A. Karichannavar, S. Palathingal, J. Jhawar, D. Brückner, D. Raj
    M, V. Guttal, The American Naturalist 205 (2025) E100–E117.
date_created: 2025-07-21T08:37:27Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-09-30T14:14:43Z
day: '01'
department:
- _id: EdHa
doi: 10.1086/734083
external_id:
  arxiv:
  - '2205.02645'
  isi:
  - '001433250500001'
  pmid:
  - '40179429'
intvolume: '       205'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2205.02645
month: '04'
oa: 1
oa_version: Preprint
page: E100-E117
pmid: 1
project:
- _id: 34e2a5b5-11ca-11ed-8bc3-b2265616ef0b
  grant_number: ALTF 343-2022
  name: A mechano-chemical theory for stem cell fate decisions in organoid development
publication: The American Naturalist
publication_identifier:
  eissn:
  - 1537-5323
  issn:
  - 0003-0147
publication_status: published
publisher: University of Chicago Press
quality_controlled: '1'
related_material:
  record:
  - id: '20121'
    relation: software
    status: public
status: public
title: Discovering stochastic dynamical equations from ecological time series data
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 205
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20077'
abstract:
- lang: eng
  text: Hyaluronic acid (HA) is a key extracellular matrix component of vertebrates,
    where it mediates cell adhesion, immune regulation, and tissue remodeling through
    its interaction with specific receptors. Although HA has been detected in a few
    invertebrate species, the lack of fundamental components of the molecular HA pathway
    poses relevant objections about its functional role in these species. Mining genomic
    and transcriptomic data, we considered the conservation of the gene locus encoding
    for the extracellular link protein (XLINK) in marine mussels as well as its expression
    patterns. Structural and phylogenetic analyses were undertaken to evaluate possible
    similarities with vertebrate orthologs and to infer the origin of this gene in
    invertebrates. Biochemical analysis was used to quantify HA in tissues of Mytilus
    galloprovincialis. As a result, we confirm that the mussel can produce HA (up
    to 1.02 ng/mg in mantle) and that its genome encodes two XLINK gene loci. These
    loci are conserved in Mytilidae species and show a complex evolutionary path.
    Mussel XLINK genes appeared to be expressed during developmental stages in three
    mussel species, ranking in the top 100 expressed genes in M. trossulus at 17 h
    post-fertilization. In conclusion, the presence of HA and an active gene with
    the potential to bind HA suggests that mussels have the potential to synthesize
    and use HA and are among the few invertebrates encoding this gene.
acknowledgement: 'This research was funded by the Italian Ministry of University and
  Research (MIUR), grant ID: P2022JEEMT (Developing a tool for the study of haplotype
  diversity in Mytilus galloprovincialis (HAMIGA)).'
article_number: '930'
article_processing_charge: Yes
article_type: original
author:
- first_name: Umberto
  full_name: Rosani, Umberto
  last_name: Rosani
- first_name: Nehir
  full_name: Altan, Nehir
  last_name: Altan
- first_name: Paola
  full_name: Venier, Paola
  last_name: Venier
- first_name: Enrico
  full_name: Bortoletto, Enrico
  last_name: Bortoletto
- first_name: Nicola
  full_name: Volpi, Nicola
  last_name: Volpi
- first_name: Carrie A
  full_name: Bernecky, Carrie A
  id: 2CB9DFE2-F248-11E8-B48F-1D18A9856A87
  last_name: Bernecky
  orcid: 0000-0003-0893-7036
citation:
  ama: Rosani U, Altan N, Venier P, Bortoletto E, Volpi N, Bernecky C. Ancestral origin
    and functional expression of a hyaluronic acid pathway complement in mussels.
    <i>Biology</i>. 2025;14(8). doi:<a href="https://doi.org/10.3390/biology14080930">10.3390/biology14080930</a>
  apa: Rosani, U., Altan, N., Venier, P., Bortoletto, E., Volpi, N., &#38; Bernecky,
    C. (2025). Ancestral origin and functional expression of a hyaluronic acid pathway
    complement in mussels. <i>Biology</i>. MDPI. <a href="https://doi.org/10.3390/biology14080930">https://doi.org/10.3390/biology14080930</a>
  chicago: Rosani, Umberto, Nehir Altan, Paola Venier, Enrico Bortoletto, Nicola Volpi,
    and Carrie Bernecky. “Ancestral Origin and Functional Expression of a Hyaluronic
    Acid Pathway Complement in Mussels.” <i>Biology</i>. MDPI, 2025. <a href="https://doi.org/10.3390/biology14080930">https://doi.org/10.3390/biology14080930</a>.
  ieee: U. Rosani, N. Altan, P. Venier, E. Bortoletto, N. Volpi, and C. Bernecky,
    “Ancestral origin and functional expression of a hyaluronic acid pathway complement
    in mussels,” <i>Biology</i>, vol. 14, no. 8. MDPI, 2025.
  ista: Rosani U, Altan N, Venier P, Bortoletto E, Volpi N, Bernecky C. 2025. Ancestral
    origin and functional expression of a hyaluronic acid pathway complement in mussels.
    Biology. 14(8), 930.
  mla: Rosani, Umberto, et al. “Ancestral Origin and Functional Expression of a Hyaluronic
    Acid Pathway Complement in Mussels.” <i>Biology</i>, vol. 14, no. 8, 930, MDPI,
    2025, doi:<a href="https://doi.org/10.3390/biology14080930">10.3390/biology14080930</a>.
  short: U. Rosani, N. Altan, P. Venier, E. Bortoletto, N. Volpi, C. Bernecky, Biology
    14 (2025).
date_created: 2025-07-25T08:28:26Z
date_published: 2025-07-24T00:00:00Z
date_updated: 2025-09-30T14:10:07Z
day: '24'
ddc:
- '570'
department:
- _id: CaBe
doi: 10.3390/biology14080930
external_id:
  isi:
  - '001557922100001'
file:
- access_level: open_access
  checksum: f5e059e66803fa54249c1db029aef0f6
  content_type: application/pdf
  creator: dernst
  date_created: 2025-07-31T09:11:09Z
  date_updated: 2025-07-31T09:11:09Z
  file_id: '20097'
  file_name: 2025_Biology_Rosani.pdf
  file_size: 1885781
  relation: main_file
  success: 1
file_date_updated: 2025-07-31T09:11:09Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
issue: '8'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Biology
publication_identifier:
  issn:
  - 2079-7737
publication_status: published
publisher: MDPI
quality_controlled: '1'
status: public
title: Ancestral origin and functional expression of a hyaluronic acid pathway complement
  in mussels
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20078'
abstract:
- lang: eng
  text: 'Let A be an abelian variety defined over a number field K, E/K be an elliptic
    curve, and ϕ : A → Em be an isogeny defined over K. Let P ∈ A(K) be such that
    ϕ(P)=(Q1,..., Qm) with RankZ(⟨Q1,...,Qm⟩)=1. We will study a divisibility sequence
    related to the point P and show its relation with elliptic divisibility sequences.'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Stefan
  full_name: Barańczuk, Stefan
  last_name: Barańczuk
- first_name: Bartosz
  full_name: Naskręcki, Bartosz
  last_name: Naskręcki
- first_name: Matteo
  full_name: Verzobio, Matteo
  id: 7aa8f170-131e-11ed-88e1-a9efd01027cb
  last_name: Verzobio
  orcid: 0000-0002-0854-0306
citation:
  ama: Barańczuk S, Naskręcki B, Verzobio M. Divisibility sequences related to abelian
    varieties isogenous to a power of an elliptic curve. <i>Journal of Number Theory</i>.
    2025;279:170-183. doi:<a href="https://doi.org/10.1016/j.jnt.2025.06.001">10.1016/j.jnt.2025.06.001</a>
  apa: Barańczuk, S., Naskręcki, B., &#38; Verzobio, M. (2025). Divisibility sequences
    related to abelian varieties isogenous to a power of an elliptic curve. <i>Journal
    of Number Theory</i>. Elsevier. <a href="https://doi.org/10.1016/j.jnt.2025.06.001">https://doi.org/10.1016/j.jnt.2025.06.001</a>
  chicago: Barańczuk, Stefan, Bartosz Naskręcki, and Matteo Verzobio. “Divisibility
    Sequences Related to Abelian Varieties Isogenous to a Power of an Elliptic Curve.”
    <i>Journal of Number Theory</i>. Elsevier, 2025. <a href="https://doi.org/10.1016/j.jnt.2025.06.001">https://doi.org/10.1016/j.jnt.2025.06.001</a>.
  ieee: S. Barańczuk, B. Naskręcki, and M. Verzobio, “Divisibility sequences related
    to abelian varieties isogenous to a power of an elliptic curve,” <i>Journal of
    Number Theory</i>, vol. 279. Elsevier, pp. 170–183, 2025.
  ista: Barańczuk S, Naskręcki B, Verzobio M. 2025. Divisibility sequences related
    to abelian varieties isogenous to a power of an elliptic curve. Journal of Number
    Theory. 279, 170–183.
  mla: Barańczuk, Stefan, et al. “Divisibility Sequences Related to Abelian Varieties
    Isogenous to a Power of an Elliptic Curve.” <i>Journal of Number Theory</i>, vol.
    279, Elsevier, 2025, pp. 170–83, doi:<a href="https://doi.org/10.1016/j.jnt.2025.06.001">10.1016/j.jnt.2025.06.001</a>.
  short: S. Barańczuk, B. Naskręcki, M. Verzobio, Journal of Number Theory 279 (2025)
    170–183.
corr_author: '1'
date_created: 2025-07-27T22:01:25Z
date_published: 2025-07-23T00:00:00Z
date_updated: 2025-09-30T14:09:38Z
day: '23'
department:
- _id: TiBr
doi: 10.1016/j.jnt.2025.06.001
external_id:
  arxiv:
  - '2309.09699'
  isi:
  - '001541172400002'
intvolume: '       279'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.jnt.2025.06.001
month: '07'
oa: 1
oa_version: Published Version
page: 170-183
publication: Journal of Number Theory
publication_identifier:
  issn:
  - 0022-314X
publication_status: epub_ahead
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Divisibility sequences related to abelian varieties isogenous to a power of
  an elliptic curve
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 279
year: '2025'
...
