---
_id: '11808'
abstract:
- lang: eng
  text: In recent years, significant advances have been made in the design and analysis
    of fully dynamic algorithms. However, these theoretical results have received
    very little attention from the practical perspective. Few of the algorithms are
    implemented and tested on real datasets, and their practical potential is far
    from understood. Here, we present a quick reference guide to recent engineering
    and theory results in the area of fully dynamic graph algorithms.
alternative_title:
- LIPIcs
article_number: '1'
article_processing_charge: No
arxiv: 1
author:
- first_name: Kathrin
  full_name: Hanauer, Kathrin
  last_name: Hanauer
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Christian
  full_name: Schulz, Christian
  last_name: Schulz
citation:
  ama: 'Hanauer K, Henzinger M, Schulz C. Recent advances in fully dynamic graph algorithms.
    In: <i>1st Symposium on Algorithmic Foundations of Dynamic Networks</i>. Vol 221.
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2022. doi:<a href="https://doi.org/10.4230/LIPIcs.SAND.2022.1">10.4230/LIPIcs.SAND.2022.1</a>'
  apa: 'Hanauer, K., Henzinger, M., &#38; Schulz, C. (2022). Recent advances in fully
    dynamic graph algorithms. In <i>1st Symposium on Algorithmic Foundations of Dynamic
    Networks</i> (Vol. 221). Virtual: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
    <a href="https://doi.org/10.4230/LIPIcs.SAND.2022.1">https://doi.org/10.4230/LIPIcs.SAND.2022.1</a>'
  chicago: Hanauer, Kathrin, Monika Henzinger, and Christian Schulz. “Recent Advances
    in Fully Dynamic Graph Algorithms.” In <i>1st Symposium on Algorithmic Foundations
    of Dynamic Networks</i>, Vol. 221. Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2022. <a href="https://doi.org/10.4230/LIPIcs.SAND.2022.1">https://doi.org/10.4230/LIPIcs.SAND.2022.1</a>.
  ieee: K. Hanauer, M. Henzinger, and C. Schulz, “Recent advances in fully dynamic
    graph algorithms,” in <i>1st Symposium on Algorithmic Foundations of Dynamic Networks</i>,
    Virtual, 2022, vol. 221.
  ista: 'Hanauer K, Henzinger M, Schulz C. 2022. Recent advances in fully dynamic
    graph algorithms. 1st Symposium on Algorithmic Foundations of Dynamic Networks.
    SAND: Symposium on Algorithmic Foundations of Dynamic Networks, LIPIcs, vol. 221,
    1.'
  mla: Hanauer, Kathrin, et al. “Recent Advances in Fully Dynamic Graph Algorithms.”
    <i>1st Symposium on Algorithmic Foundations of Dynamic Networks</i>, vol. 221,
    1, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022, doi:<a href="https://doi.org/10.4230/LIPIcs.SAND.2022.1">10.4230/LIPIcs.SAND.2022.1</a>.
  short: K. Hanauer, M. Henzinger, C. Schulz, in:, 1st Symposium on Algorithmic Foundations
    of Dynamic Networks, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.
conference:
  end_date: 2022-03-30
  location: Virtual
  name: 'SAND: Symposium on Algorithmic Foundations of Dynamic Networks'
  start_date: 2022-03-28
date_created: 2022-08-11T14:35:52Z
date_published: 2022-04-29T00:00:00Z
date_updated: 2024-11-06T08:23:49Z
day: '29'
doi: 10.4230/LIPIcs.SAND.2022.1
extern: '1'
external_id:
  arxiv:
  - '2102.11169'
fulldoi: https://doi.org/10.4230/LIPIcs.SAND.2022.1
intvolume: '       221'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.4230/LIPIcs.SAND.2022.1
month: '04'
oa: 1
oa_version: Published Version
publication: 1st Symposium on Algorithmic Foundations of Dynamic Networks
publication_identifier:
  eissn:
  - 1868-8969
  isbn:
  - '9783959772242'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Recent advances in fully dynamic graph algorithms
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 221
year: '2022'
...
---
_id: '11812'
abstract:
- lang: eng
  text: "This paper presents a comprehensive study of algorithms for maintaining the
    number of all connected four-vertex subgraphs in a dynamic graph. Specifically,
    our algorithms maintain the number of paths of length three in deterministic amortized
    O(m^{1/2}) update time, and any other connected four-vertex subgraph which is
    not a clique in deterministic amortized update time O(m^{2/3}). Queries can be
    answered in constant time. We also study the query times for subgraphs containing
    an arbitrary edge that is supplied only with the query as well as the case where
    only subgraphs containing a vertex s that is fixed beforehand are considered.
    For length-3 paths, paws, 4-cycles, and diamonds our bounds match or are not far
    from (conditional) lower bounds: Based on the OMv conjecture we show that any
    dynamic algorithm that detects the existence of paws, diamonds, or 4-cycles or
    that counts length-3 paths takes update time Ω(m^{1/2-δ}).\r\nAdditionally, for
    4-cliques and all connected induced subgraphs, we show a lower bound of Ω(m^{1-δ})
    for any small constant δ > 0 for the amortized update time, assuming the static
    combinatorial 4-clique conjecture holds. This shows that the O(m) algorithm by
    Eppstein et al. [David Eppstein et al., 2012] for these subgraphs cannot be improved
    by a polynomial factor."
alternative_title:
- LIPIcs
article_number: '18'
article_processing_charge: No
arxiv: 1
author:
- first_name: Kathrin
  full_name: Hanauer, Kathrin
  last_name: Hanauer
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Qi Cheng
  full_name: Hua, Qi Cheng
  last_name: Hua
citation:
  ama: 'Hanauer K, Henzinger M, Hua QC. Fully dynamic four-vertex subgraph counting.
    In: <i>1st Symposium on Algorithmic Foundations of Dynamic Networks</i>. Vol 221.
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2022. doi:<a href="https://doi.org/10.4230/LIPIcs.SAND.2022.18">10.4230/LIPIcs.SAND.2022.18</a>'
  apa: 'Hanauer, K., Henzinger, M., &#38; Hua, Q. C. (2022). Fully dynamic four-vertex
    subgraph counting. In <i>1st Symposium on Algorithmic Foundations of Dynamic Networks</i>
    (Vol. 221). Virtual: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.SAND.2022.18">https://doi.org/10.4230/LIPIcs.SAND.2022.18</a>'
  chicago: Hanauer, Kathrin, Monika Henzinger, and Qi Cheng Hua. “Fully Dynamic Four-Vertex
    Subgraph Counting.” In <i>1st Symposium on Algorithmic Foundations of Dynamic
    Networks</i>, Vol. 221. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.
    <a href="https://doi.org/10.4230/LIPIcs.SAND.2022.18">https://doi.org/10.4230/LIPIcs.SAND.2022.18</a>.
  ieee: K. Hanauer, M. Henzinger, and Q. C. Hua, “Fully dynamic four-vertex subgraph
    counting,” in <i>1st Symposium on Algorithmic Foundations of Dynamic Networks</i>,
    Virtual, 2022, vol. 221.
  ista: 'Hanauer K, Henzinger M, Hua QC. 2022. Fully dynamic four-vertex subgraph
    counting. 1st Symposium on Algorithmic Foundations of Dynamic Networks. SAND:
    Symposium on Algorithmic Foundations of Dynamic Networks, LIPIcs, vol. 221, 18.'
  mla: Hanauer, Kathrin, et al. “Fully Dynamic Four-Vertex Subgraph Counting.” <i>1st
    Symposium on Algorithmic Foundations of Dynamic Networks</i>, vol. 221, 18, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2022, doi:<a href="https://doi.org/10.4230/LIPIcs.SAND.2022.18">10.4230/LIPIcs.SAND.2022.18</a>.
  short: K. Hanauer, M. Henzinger, Q.C. Hua, in:, 1st Symposium on Algorithmic Foundations
    of Dynamic Networks, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2022.
conference:
  end_date: 2022-04-30
  location: Virtual
  name: 'SAND: Symposium on Algorithmic Foundations of Dynamic Networks'
  start_date: 2022-04-28
date_created: 2022-08-12T06:57:55Z
date_published: 2022-04-29T00:00:00Z
date_updated: 2024-11-06T08:22:47Z
day: '29'
doi: 10.4230/LIPIcs.SAND.2022.18
extern: '1'
external_id:
  arxiv:
  - '2106.15524'
fulldoi: https://doi.org/10.4230/LIPIcs.SAND.2022.18
intvolume: '       221'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.4230/LIPIcs.SAND.2022.18
month: '04'
oa: 1
oa_version: Published Version
publication: 1st Symposium on Algorithmic Foundations of Dynamic Networks
publication_identifier:
  isbn:
  - '9783959772242'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fully dynamic four-vertex subgraph counting
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 221
year: '2022'
...
---
_id: '11841'
abstract:
- lang: eng
  text: Primary nucleation is the fundamental event that initiates the conversion
    of proteins from their normal physiological forms into pathological amyloid aggregates
    associated with the onset and development of disorders including systemic amyloidosis,
    as well as the neurodegenerative conditions Alzheimer’s and Parkinson’s diseases.
    It has become apparent that the presence of surfaces can dramatically modulate
    nucleation. However, the underlying physicochemical parameters governing this
    process have been challenging to elucidate, with interfaces in some cases having
    been found to accelerate aggregation, while in others they can inhibit the kinetics
    of this process. Here we show through kinetic analysis that for three different
    fibril-forming proteins, interfaces affect the aggregation reaction mainly through
    modulating the primary nucleation step. Moreover, we show through direct measurements
    of the Gibbs free energy of adsorption, combined with theory and coarse-grained
    computer simulations, that overall nucleation rates are suppressed at high and
    at low surface interaction strengths but significantly enhanced at intermediate
    strengths, and we verify these regimes experimentally. Taken together, these results
    provide a quantitative description of the fundamental process which triggers amyloid
    formation and shed light on the key factors that control this process.
acknowledgement: "The research leading to these results has received funding from
  the European Research Council (ERC) under the European Union’s Seventh Framework
  Programme (FP7/2007-2013) through the ERC grant PhysProt\r\n(agreement 337969).
  We are grateful for financial support from the Biotechnology and Biological Sciences
  Research Council (BBSRC) (T.P.J.K.), the Newman\r\nFoundation (T.P.J.K.), the Wellcome
  Trust (T.P.J.K. and M.V.), Peterhouse College\r\nCambridge (T.C.T.M.), the ERC Starting
  Grant (StG) Non-Equilibrium Protein Assembly (NEPA) (A.S.), the Royal Society (A.S.),
  the Academy of Medical Sciences\r\n(A.S. and J.K.), and the Cambridge Centre for
  Misfolding Diseases (CMD)."
article_number: e2109718119
article_processing_charge: No
article_type: original
author:
- first_name: Zenon
  full_name: Toprakcioglu, Zenon
  last_name: Toprakcioglu
- first_name: Ayaka
  full_name: Kamada, Ayaka
  last_name: Kamada
- first_name: Thomas C.T.
  full_name: Michaels, Thomas C.T.
  last_name: Michaels
- first_name: Mengqi
  full_name: Xie, Mengqi
  last_name: Xie
- first_name: Johannes
  full_name: Krausser, Johannes
  last_name: Krausser
- first_name: Jiapeng
  full_name: Wei, Jiapeng
  last_name: Wei
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
- first_name: Michele
  full_name: Vendruscolo, Michele
  last_name: Vendruscolo
- first_name: Tuomas P.J.
  full_name: Knowles, Tuomas P.J.
  last_name: Knowles
citation:
  ama: Toprakcioglu Z, Kamada A, Michaels TCT, et al. Adsorption free energy predicts
    amyloid protein nucleation rates. <i>Proceedings of the National Academy of Sciences
    of the United States of America</i>. 2022;119(31). doi:<a href="https://doi.org/10.1073/pnas.2109718119">10.1073/pnas.2109718119</a>
  apa: Toprakcioglu, Z., Kamada, A., Michaels, T. C. T., Xie, M., Krausser, J., Wei,
    J., … Knowles, T. P. J. (2022). Adsorption free energy predicts amyloid protein
    nucleation rates. <i>Proceedings of the National Academy of Sciences of the United
    States of America</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.2109718119">https://doi.org/10.1073/pnas.2109718119</a>
  chicago: Toprakcioglu, Zenon, Ayaka Kamada, Thomas C.T. Michaels, Mengqi Xie, Johannes
    Krausser, Jiapeng Wei, Anđela Šarić, Michele Vendruscolo, and Tuomas P.J. Knowles.
    “Adsorption Free Energy Predicts Amyloid Protein Nucleation Rates.” <i>Proceedings
    of the National Academy of Sciences of the United States of America</i>. National
    Academy of Sciences, 2022. <a href="https://doi.org/10.1073/pnas.2109718119">https://doi.org/10.1073/pnas.2109718119</a>.
  ieee: Z. Toprakcioglu <i>et al.</i>, “Adsorption free energy predicts amyloid protein
    nucleation rates,” <i>Proceedings of the National Academy of Sciences of the United
    States of America</i>, vol. 119, no. 31. National Academy of Sciences, 2022.
  ista: Toprakcioglu Z, Kamada A, Michaels TCT, Xie M, Krausser J, Wei J, Šarić A,
    Vendruscolo M, Knowles TPJ. 2022. Adsorption free energy predicts amyloid protein
    nucleation rates. Proceedings of the National Academy of Sciences of the United
    States of America. 119(31), e2109718119.
  mla: Toprakcioglu, Zenon, et al. “Adsorption Free Energy Predicts Amyloid Protein
    Nucleation Rates.” <i>Proceedings of the National Academy of Sciences of the United
    States of America</i>, vol. 119, no. 31, e2109718119, National Academy of Sciences,
    2022, doi:<a href="https://doi.org/10.1073/pnas.2109718119">10.1073/pnas.2109718119</a>.
  short: Z. Toprakcioglu, A. Kamada, T.C.T. Michaels, M. Xie, J. Krausser, J. Wei,
    A. Šarić, M. Vendruscolo, T.P.J. Knowles, Proceedings of the National Academy
    of Sciences of the United States of America 119 (2022).
date_created: 2022-08-14T22:01:45Z
date_published: 2022-07-28T00:00:00Z
date_updated: 2025-06-12T06:21:34Z
day: '28'
ddc:
- '570'
department:
- _id: AnSa
doi: 10.1073/pnas.2109718119
ec_funded: 1
external_id:
  isi:
  - '000903753500002'
  pmid:
  - '35901206'
file:
- access_level: open_access
  checksum: 0fe3878896cbeb6c44e29222ec2f336a
  content_type: application/pdf
  creator: dernst
  date_created: 2023-10-04T09:05:44Z
  date_updated: 2023-10-04T09:05:44Z
  file_id: '14386'
  file_name: 2022_PNAS_Toprakcioglu.pdf
  file_size: 2476021
  relation: main_file
  success: 1
file_date_updated: 2023-10-04T09:05:44Z
fulldoi: https://doi.org/10.1073/pnas.2109718119
has_accepted_license: '1'
intvolume: '       119'
isi: 1
issue: '31'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: eba2549b-77a9-11ec-83b8-a81e493eae4e
  call_identifier: H2020
  grant_number: '802960'
  name: 'Non-Equilibrium Protein Assembly: from Building Blocks to Biological Machines'
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  eissn:
  - 1091-6490
  issn:
  - 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Adsorption free energy predicts amyloid protein nucleation rates
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 119
year: '2022'
...
---
_id: '11842'
abstract:
- lang: eng
  text: We consider the flow of two viscous and incompressible fluids within a bounded
    domain modeled by means of a two-phase Navier–Stokes system. The two fluids are
    assumed to be immiscible, meaning that they are separated by an interface. With
    respect to the motion of the interface, we consider pure transport by the fluid
    flow. Along the boundary of the domain, a complete slip boundary condition for
    the fluid velocities and a constant ninety degree contact angle condition for
    the interface are assumed. In the present work, we devise for the resulting evolution
    problem a suitable weak solution concept based on the framework of varifolds and
    establish as the main result a weak-strong uniqueness principle in 2D. The proof
    is based on a relative entropy argument and requires a non-trivial further development
    of ideas from the recent work of Fischer and the first author (Arch. Ration. Mech.
    Anal. 236, 2020) to incorporate the contact angle condition. To focus on the effects
    of the necessarily singular geometry of the evolving fluid domains, we work for
    simplicity in the regime of same viscosities for the two fluids.
acknowledgement: The authors warmly thank their former resp. current PhD advisor Julian
  Fischer for the suggestion of this problem and for valuable initial discussions
  on the subjects of this paper. This project has received funding from the European
  Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
  programme (grant agreement No 948819) , and from the Deutsche Forschungsgemeinschaft
  (DFG, German Research Foundation) under Germany’s Excellence Strategy – EXC-2047/1
  – 390685813.
article_number: '93'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Sebastian
  full_name: Hensel, Sebastian
  id: 4D23B7DA-F248-11E8-B48F-1D18A9856A87
  last_name: Hensel
  orcid: 0000-0001-7252-8072
- first_name: Alice
  full_name: Marveggio, Alice
  id: 25647992-AA84-11E9-9D75-8427E6697425
  last_name: Marveggio
citation:
  ama: Hensel S, Marveggio A. Weak-strong uniqueness for the Navier–Stokes equation
    for two fluids with ninety degree contact angle and same viscosities. <i>Journal
    of Mathematical Fluid Mechanics</i>. 2022;24(3). doi:<a href="https://doi.org/10.1007/s00021-022-00722-2">10.1007/s00021-022-00722-2</a>
  apa: Hensel, S., &#38; Marveggio, A. (2022). Weak-strong uniqueness for the Navier–Stokes
    equation for two fluids with ninety degree contact angle and same viscosities.
    <i>Journal of Mathematical Fluid Mechanics</i>. Springer Nature. <a href="https://doi.org/10.1007/s00021-022-00722-2">https://doi.org/10.1007/s00021-022-00722-2</a>
  chicago: Hensel, Sebastian, and Alice Marveggio. “Weak-Strong Uniqueness for the
    Navier–Stokes Equation for Two Fluids with Ninety Degree Contact Angle and Same
    Viscosities.” <i>Journal of Mathematical Fluid Mechanics</i>. Springer Nature,
    2022. <a href="https://doi.org/10.1007/s00021-022-00722-2">https://doi.org/10.1007/s00021-022-00722-2</a>.
  ieee: S. Hensel and A. Marveggio, “Weak-strong uniqueness for the Navier–Stokes
    equation for two fluids with ninety degree contact angle and same viscosities,”
    <i>Journal of Mathematical Fluid Mechanics</i>, vol. 24, no. 3. Springer Nature,
    2022.
  ista: Hensel S, Marveggio A. 2022. Weak-strong uniqueness for the Navier–Stokes
    equation for two fluids with ninety degree contact angle and same viscosities.
    Journal of Mathematical Fluid Mechanics. 24(3), 93.
  mla: Hensel, Sebastian, and Alice Marveggio. “Weak-Strong Uniqueness for the Navier–Stokes
    Equation for Two Fluids with Ninety Degree Contact Angle and Same Viscosities.”
    <i>Journal of Mathematical Fluid Mechanics</i>, vol. 24, no. 3, 93, Springer Nature,
    2022, doi:<a href="https://doi.org/10.1007/s00021-022-00722-2">10.1007/s00021-022-00722-2</a>.
  short: S. Hensel, A. Marveggio, Journal of Mathematical Fluid Mechanics 24 (2022).
corr_author: '1'
date_created: 2022-08-14T22:01:45Z
date_published: 2022-08-01T00:00:00Z
date_updated: 2026-04-07T13:28:13Z
day: '01'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1007/s00021-022-00722-2
ec_funded: 1
external_id:
  arxiv:
  - '2112.11154'
  isi:
  - '000834834300001'
file:
- access_level: open_access
  checksum: 75c5f286300e6f0539cf57b4dba108d5
  content_type: application/pdf
  creator: cchlebak
  date_created: 2022-08-16T06:55:22Z
  date_updated: 2022-08-16T06:55:22Z
  file_id: '11848'
  file_name: 2022_JMathFluidMech_Hensel.pdf
  file_size: 2045570
  relation: main_file
  success: 1
file_date_updated: 2022-08-16T06:55:22Z
fulldoi: https://doi.org/10.1007/s00021-022-00722-2
has_accepted_license: '1'
intvolume: '        24'
isi: 1
issue: '3'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 0aa76401-070f-11eb-9043-b5bb049fa26d
  call_identifier: H2020
  grant_number: '948819'
  name: Bridging Scales in Random Materials
publication: Journal of Mathematical Fluid Mechanics
publication_identifier:
  eissn:
  - 1422-6952
  issn:
  - 1422-6928
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '14587'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Weak-strong uniqueness for the Navier–Stokes equation for two fluids with ninety
  degree contact angle and same viscosities
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 24
year: '2022'
...
---
_id: '11844'
abstract:
- lang: eng
  text: "In the stochastic population protocol model, we are given a connected graph
    with n nodes, and in every time step, a scheduler samples an edge of the graph
    uniformly at random and the nodes connected by this edge interact. A fundamental
    task in this model is stable leader election, in which all nodes start in an identical
    state and the aim is to reach a configuration in which (1) exactly one node is
    elected as leader and (2) this node remains as the unique leader no matter what
    sequence of interactions follows. On cliques, the complexity of this problem has
    recently been settled: time-optimal protocols stabilize in Θ(n log n) expected
    steps using Θ(log log n) states, whereas protocols that use O(1) states require
    Θ(n2) expected steps.\r\n\r\nIn this work, we investigate the complexity of stable
    leader election on general graphs. We provide the first non-trivial time lower
    bounds for leader election on general graphs, showing that, when moving beyond
    cliques, the complexity landscape of leader election becomes very diverse: the
    time required to elect a leader can range from O(1) to Θ(n3) expected steps. On
    the upper bound side, we first observe that there exists a protocol that is time-optimal
    on many graph families, but uses polynomially-many states. In contrast, we give
    a near-time-optimal protocol that uses only O(log2n) states that is at most a
    factor log n slower. Finally, we show that the constant-state protocol of Beauquier
    et al. [OPODIS 2013] is at most a factor n log n slower than the fast polynomial-state
    protocol. Moreover, among constant-state protocols, this protocol has near-optimal
    average case complexity on dense random graphs."
acknowledgement: We thank the anonymous reviewers for their helpful comments. We gratefully
  acknowledge funding from the European Research Council (ERC) under the European
  Union’s Horizon 2020 research and innovation programme (grant agreement No 805223
  ScaleML).
article_processing_charge: Yes (via OA deal)
arxiv: 1
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Joel
  full_name: Rybicki, Joel
  id: 334EFD2E-F248-11E8-B48F-1D18A9856A87
  last_name: Rybicki
  orcid: 0000-0002-6432-6646
- first_name: Sasha
  full_name: Voitovych, Sasha
  last_name: Voitovych
citation:
  ama: 'Alistarh D-A, Rybicki J, Voitovych S. Near-optimal leader election in population
    protocols on graphs. In: <i>Proceedings of the Annual ACM Symposium on Principles
    of Distributed Computing</i>. Association for Computing Machinery; 2022:246-256.
    doi:<a href="https://doi.org/10.1145/3519270.3538435">10.1145/3519270.3538435</a>'
  apa: 'Alistarh, D.-A., Rybicki, J., &#38; Voitovych, S. (2022). Near-optimal leader
    election in population protocols on graphs. In <i>Proceedings of the Annual ACM
    Symposium on Principles of Distributed Computing</i> (pp. 246–256). Salerno, Italy:
    Association for Computing Machinery. <a href="https://doi.org/10.1145/3519270.3538435">https://doi.org/10.1145/3519270.3538435</a>'
  chicago: Alistarh, Dan-Adrian, Joel Rybicki, and Sasha Voitovych. “Near-Optimal
    Leader Election in Population Protocols on Graphs.” In <i>Proceedings of the Annual
    ACM Symposium on Principles of Distributed Computing</i>, 246–56. Association
    for Computing Machinery, 2022. <a href="https://doi.org/10.1145/3519270.3538435">https://doi.org/10.1145/3519270.3538435</a>.
  ieee: D.-A. Alistarh, J. Rybicki, and S. Voitovych, “Near-optimal leader election
    in population protocols on graphs,” in <i>Proceedings of the Annual ACM Symposium
    on Principles of Distributed Computing</i>, Salerno, Italy, 2022, pp. 246–256.
  ista: 'Alistarh D-A, Rybicki J, Voitovych S. 2022. Near-optimal leader election
    in population protocols on graphs. Proceedings of the Annual ACM Symposium on
    Principles of Distributed Computing. PODC: Symposium on Principles of Distributed
    Computing, 246–256.'
  mla: Alistarh, Dan-Adrian, et al. “Near-Optimal Leader Election in Population Protocols
    on Graphs.” <i>Proceedings of the Annual ACM Symposium on Principles of Distributed
    Computing</i>, Association for Computing Machinery, 2022, pp. 246–56, doi:<a href="https://doi.org/10.1145/3519270.3538435">10.1145/3519270.3538435</a>.
  short: D.-A. Alistarh, J. Rybicki, S. Voitovych, in:, Proceedings of the Annual
    ACM Symposium on Principles of Distributed Computing, Association for Computing
    Machinery, 2022, pp. 246–256.
conference:
  end_date: 2022-07-29
  location: Salerno, Italy
  name: 'PODC: Symposium on Principles of Distributed Computing'
  start_date: 2022-07-25
corr_author: '1'
date_created: 2022-08-14T22:01:46Z
date_published: 2022-07-21T00:00:00Z
date_updated: 2025-12-30T09:04:17Z
day: '21'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.1145/3519270.3538435
ec_funded: 1
external_id:
  arxiv:
  - '2205.12597'
  isi:
  - '001031439100030'
file:
- access_level: open_access
  checksum: 4c6b29172b8e355b4fbc364a2e0827b2
  content_type: application/pdf
  creator: cchlebak
  date_created: 2022-08-16T08:05:15Z
  date_updated: 2022-08-16T08:05:15Z
  file_id: '11854'
  file_name: 2022_PODC_Alistarh.pdf
  file_size: 1593474
  relation: main_file
  success: 1
file_date_updated: 2022-08-16T08:05:15Z
fulldoi: https://doi.org/10.1145/3519270.3538435
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 246-256
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: Proceedings of the Annual ACM Symposium on Principles of Distributed
  Computing
publication_identifier:
  isbn:
  - '9781450392624'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
  record:
  - id: '19969'
    relation: later_version
    status: public
scopus_import: '1'
status: public
title: Near-optimal leader election in population protocols on graphs
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2022'
...
---
_id: '11858'
abstract:
- lang: eng
  text: "This paper is a continuation of Part I of this project, where we developed
    a new local well-posedness theory for nonlinear stochastic PDEs with Gaussian
    noise. In the current Part II we consider blow-up criteria and regularization
    phenomena. As in Part I we can allow nonlinearities with polynomial growth and
    rough initial values from critical spaces. In the first main result we obtain
    several new blow-up criteria for quasi- and semilinear stochastic evolution equations.
    In particular, for semilinear equations we obtain a Serrin type blow-up criterium,
    which extends a recent result of Prüss–Simonett–Wilke (J Differ Equ 264(3):2028–2074,
    2018) to the stochastic setting. Blow-up criteria can be used to prove global
    well-posedness for SPDEs. As in Part I, maximal regularity techniques and weights
    in time play a central role in the proofs. Our second contribution is a new method
    to bootstrap Sobolev and Hölder regularity in time and space, which does not require
    smoothness of the initial data. The blow-up criteria are at the basis of these
    new methods. Moreover, in applications the bootstrap results can be combined with
    our blow-up criteria, to obtain efficient ways to prove global existence. This
    gives new results even in classical \U0001D43F2-settings, which we illustrate
    for a concrete SPDE. In future works in preparation we apply the results of the
    current paper to obtain global well-posedness results and regularity for several
    concrete SPDEs. These include stochastic Navier–Stokes equations, reaction– diffusion
    equations and the Allen–Cahn equation. Our setting allows to put these SPDEs into
    a more flexible framework, where less restrictions on the nonlinearities are needed,
    and we are able to treat rough initial values from critical spaces. Moreover,
    we will obtain higher-order regularity results."
acknowledgement: "The authors thank Emiel Lorist for helpful comments. The authors
  thank the anonymous referees for their helpful remarks to improve the presentation.\r\nOpen
  access funding provided by Institute of Science and Technology (IST Austria)."
article_number: '56'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Antonio
  full_name: Agresti, Antonio
  id: 673cd0cc-9b9a-11eb-b144-88f30e1fbb72
  last_name: Agresti
  orcid: 0000-0002-9573-2962
- first_name: Mark
  full_name: Veraar, Mark
  last_name: Veraar
citation:
  ama: Agresti A, Veraar M. Nonlinear parabolic stochastic evolution equations in
    critical spaces part II. <i>Journal of Evolution Equations</i>. 2022;22(2). doi:<a
    href="https://doi.org/10.1007/s00028-022-00786-7">10.1007/s00028-022-00786-7</a>
  apa: Agresti, A., &#38; Veraar, M. (2022). Nonlinear parabolic stochastic evolution
    equations in critical spaces part II. <i>Journal of Evolution Equations</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s00028-022-00786-7">https://doi.org/10.1007/s00028-022-00786-7</a>
  chicago: Agresti, Antonio, and Mark Veraar. “Nonlinear Parabolic Stochastic Evolution
    Equations in Critical Spaces Part II.” <i>Journal of Evolution Equations</i>.
    Springer Nature, 2022. <a href="https://doi.org/10.1007/s00028-022-00786-7">https://doi.org/10.1007/s00028-022-00786-7</a>.
  ieee: A. Agresti and M. Veraar, “Nonlinear parabolic stochastic evolution equations
    in critical spaces part II,” <i>Journal of Evolution Equations</i>, vol. 22, no.
    2. Springer Nature, 2022.
  ista: Agresti A, Veraar M. 2022. Nonlinear parabolic stochastic evolution equations
    in critical spaces part II. Journal of Evolution Equations. 22(2), 56.
  mla: Agresti, Antonio, and Mark Veraar. “Nonlinear Parabolic Stochastic Evolution
    Equations in Critical Spaces Part II.” <i>Journal of Evolution Equations</i>,
    vol. 22, no. 2, 56, Springer Nature, 2022, doi:<a href="https://doi.org/10.1007/s00028-022-00786-7">10.1007/s00028-022-00786-7</a>.
  short: A. Agresti, M. Veraar, Journal of Evolution Equations 22 (2022).
corr_author: '1'
date_created: 2022-08-16T08:39:43Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2024-10-09T21:03:06Z
day: '01'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1007/s00028-022-00786-7
external_id:
  isi:
  - '000809108500001'
file:
- access_level: open_access
  checksum: 59b99d1b48b6bd40983e7ce298524a21
  content_type: application/pdf
  creator: kschuh
  date_created: 2022-08-16T08:52:46Z
  date_updated: 2022-08-16T08:52:46Z
  file_id: '11862'
  file_name: 2022_Journal of Evolution Equations_Agresti.pdf
  file_size: 1758371
  relation: main_file
  success: 1
file_date_updated: 2022-08-16T08:52:46Z
fulldoi: https://doi.org/10.1007/s00028-022-00786-7
has_accepted_license: '1'
intvolume: '        22'
isi: 1
issue: '2'
keyword:
- Mathematics (miscellaneous)
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Journal of Evolution Equations
publication_identifier:
  eissn:
  - 1424-3202
  issn:
  - 1424-3199
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Nonlinear parabolic stochastic evolution equations in critical spaces part
  II
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 22
year: '2022'
...
---
_id: '11916'
abstract:
- lang: eng
  text: A domain is called Kac regular for a quadratic form on L2 if every functions
    vanishing almost everywhere outside the domain can be approximated in form norm
    by functions with compact support in the domain. It is shown that this notion
    is stable under domination of quadratic forms. As applications measure perturbations
    of quasi-regular Dirichlet forms, Cheeger energies on metric measure spaces and
    Schrödinger operators on manifolds are studied. Along the way a characterization
    of the Sobolev space with Dirichlet boundary conditions on domains in infinitesimally
    Riemannian metric measure spaces is obtained.
acknowledgement: "The author was supported by the German Academic Scholarship Foundation
  (Studienstiftung des deutschen Volkes) and by the German Research Foundation (DFG)
  via RTG 1523/2. The author would like to thank Daniel Lenz for his support and encouragement
  during the author’s ongoing graduate studies and him as well as Marcel Schmidt for
  fruitful discussions on domination of quadratic forms. He wants to thank Batu Güneysu
  and Peter Stollmann for valuable comments on a preliminary version of this article.
  He would also like to thank the organizers of the conference Analysis and Geometry
  on Graphs and Manifolds in Potsdam, where the initial motivation of this article
  was conceived, and the organizers of the intense activity period Metric Measure
  Spaces and Ricci Curvature at MPIM in Bonn, where this work was finished.\r\nOpen
  access funding provided by Institute of Science and Technology (IST Austria)."
article_number: '38'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Melchior
  full_name: Wirth, Melchior
  id: 88644358-0A0E-11EA-8FA5-49A33DDC885E
  last_name: Wirth
  orcid: 0000-0002-0519-4241
citation:
  ama: Wirth M. Kac regularity and domination of quadratic forms. <i>Advances in Operator
    Theory</i>. 2022;7(3). doi:<a href="https://doi.org/10.1007/s43036-022-00199-w">10.1007/s43036-022-00199-w</a>
  apa: Wirth, M. (2022). Kac regularity and domination of quadratic forms. <i>Advances
    in Operator Theory</i>. Springer Nature. <a href="https://doi.org/10.1007/s43036-022-00199-w">https://doi.org/10.1007/s43036-022-00199-w</a>
  chicago: Wirth, Melchior. “Kac Regularity and Domination of Quadratic Forms.” <i>Advances
    in Operator Theory</i>. Springer Nature, 2022. <a href="https://doi.org/10.1007/s43036-022-00199-w">https://doi.org/10.1007/s43036-022-00199-w</a>.
  ieee: M. Wirth, “Kac regularity and domination of quadratic forms,” <i>Advances
    in Operator Theory</i>, vol. 7, no. 3. Springer Nature, 2022.
  ista: Wirth M. 2022. Kac regularity and domination of quadratic forms. Advances
    in Operator Theory. 7(3), 38.
  mla: Wirth, Melchior. “Kac Regularity and Domination of Quadratic Forms.” <i>Advances
    in Operator Theory</i>, vol. 7, no. 3, 38, Springer Nature, 2022, doi:<a href="https://doi.org/10.1007/s43036-022-00199-w">10.1007/s43036-022-00199-w</a>.
  short: M. Wirth, Advances in Operator Theory 7 (2022).
corr_author: '1'
date_created: 2022-08-18T07:22:24Z
date_published: 2022-07-01T00:00:00Z
date_updated: 2024-10-09T21:03:07Z
day: '01'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s43036-022-00199-w
file:
- access_level: open_access
  checksum: 913474844a1b38264fb710746d5e2e98
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-18T08:02:34Z
  date_updated: 2022-08-18T08:02:34Z
  file_id: '11921'
  file_name: 2022_AdvancesOperatorTheory_Wirth.pdf
  file_size: 389060
  relation: main_file
  success: 1
file_date_updated: 2022-08-18T08:02:34Z
fulldoi: https://doi.org/10.1007/s43036-022-00199-w
has_accepted_license: '1'
intvolume: '         7'
issue: '3'
keyword:
- Algebra and Number Theory
- Analysis
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Advances in Operator Theory
publication_identifier:
  eissn:
  - 2538-225X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Kac regularity and domination of quadratic forms
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2022'
...
---
_id: '11917'
abstract:
- lang: eng
  text: We study the many-body dynamics of an initially factorized bosonic wave function
    in the mean-field regime. We prove large deviation estimates for the fluctuations
    around the condensate. We derive an upper bound extending a recent result to more
    general interactions. Furthermore, we derive a new lower bound which agrees with
    the upper bound in leading order.
acknowledgement: "The authors thank Gérard Ben Arous for pointing out the question
  of a lower bound. Funding from the European Union’s Horizon 2020 research and innovation
  programme under the ERC Grant Agreement No. 694227 (R.S.) and under the Marie Skłodowska-Curie
  Grant Agreement No. 754411 (S.R.) is gratefully acknowledged.\r\nOpen access funding
  provided by IST Austria."
article_number: '9'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Simone Anna Elvira
  full_name: Rademacher, Simone Anna Elvira
  id: 856966FE-A408-11E9-977E-802DE6697425
  last_name: Rademacher
  orcid: 0000-0001-5059-4466
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Rademacher SAE, Seiringer R. Large deviation estimates for weakly interacting
    bosons. <i>Journal of Statistical Physics</i>. 2022;188. doi:<a href="https://doi.org/10.1007/s10955-022-02940-4">10.1007/s10955-022-02940-4</a>
  apa: Rademacher, S. A. E., &#38; Seiringer, R. (2022). Large deviation estimates
    for weakly interacting bosons. <i>Journal of Statistical Physics</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s10955-022-02940-4">https://doi.org/10.1007/s10955-022-02940-4</a>
  chicago: Rademacher, Simone Anna Elvira, and Robert Seiringer. “Large Deviation
    Estimates for Weakly Interacting Bosons.” <i>Journal of Statistical Physics</i>.
    Springer Nature, 2022. <a href="https://doi.org/10.1007/s10955-022-02940-4">https://doi.org/10.1007/s10955-022-02940-4</a>.
  ieee: S. A. E. Rademacher and R. Seiringer, “Large deviation estimates for weakly
    interacting bosons,” <i>Journal of Statistical Physics</i>, vol. 188. Springer
    Nature, 2022.
  ista: Rademacher SAE, Seiringer R. 2022. Large deviation estimates for weakly interacting
    bosons. Journal of Statistical Physics. 188, 9.
  mla: Rademacher, Simone Anna Elvira, and Robert Seiringer. “Large Deviation Estimates
    for Weakly Interacting Bosons.” <i>Journal of Statistical Physics</i>, vol. 188,
    9, Springer Nature, 2022, doi:<a href="https://doi.org/10.1007/s10955-022-02940-4">10.1007/s10955-022-02940-4</a>.
  short: S.A.E. Rademacher, R. Seiringer, Journal of Statistical Physics 188 (2022).
corr_author: '1'
date_created: 2022-08-18T07:23:26Z
date_published: 2022-07-01T00:00:00Z
date_updated: 2025-04-14T07:26:59Z
day: '01'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s10955-022-02940-4
ec_funded: 1
external_id:
  isi:
  - '000805175000001'
file:
- access_level: open_access
  checksum: 44418cb44f07fa21ed3907f85abf7f39
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-18T08:09:00Z
  date_updated: 2022-08-18T08:09:00Z
  file_id: '11922'
  file_name: 2022_JournalStatisticalPhysics_Rademacher.pdf
  file_size: 483481
  relation: main_file
  success: 1
file_date_updated: 2022-08-18T08:09:00Z
fulldoi: https://doi.org/10.1007/s10955-022-02940-4
has_accepted_license: '1'
intvolume: '       188'
isi: 1
keyword:
- Mathematical Physics
- Statistical and Nonlinear Physics
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Journal of Statistical Physics
publication_identifier:
  eissn:
  - 1572-9613
  issn:
  - 0022-4715
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Large deviation estimates for weakly interacting bosons
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 188
year: '2022'
...
---
_id: '11918'
abstract:
- lang: eng
  text: "Statistics of small subgraph counts such as triangles, four-cycles, and s-t
    paths of short lengths reveal important structural properties of the underlying
    graph. These problems have been widely studied in social network analysis. In
    most relevant applications, the graphs are not only massive but also change dynamically
    over time. Most of these problems become hard in the dynamic setting when considering
    the worst case. In this paper, we ask whether the question of small subgraph counting
    over dynamic graphs is hard also in the average case.\r\n\r\nWe consider the simplest
    possible average case model where the updates follow an Erdős-Rényi graph: each
    update selects a pair of vertices (u, v) uniformly at random and flips the existence
    of the edge (u, v). We develop new lower bounds and matching algorithms in this
    model for counting four-cycles, counting triangles through a specified point s,
    or a random queried point, and st paths of length 3, 4 and 5. Our results indicate
    while computing st paths of length 3, and 4 are easy in the average case with
    O(1) update time (note that they are hard in the worst case), it becomes hard
    when considering st paths of length 5.\r\n\r\nWe introduce new techniques which
    allow us to get average-case hardness for these graph problems from the worst-case
    hardness of the Online Matrix vector problem (OMv). Our techniques rely on recent
    advances in fine-grained average-case complexity. Our techniques advance this
    literature, giving the ability to prove new lower bounds on average-case dynamic
    algorithms."
article_processing_charge: No
author:
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Andrea
  full_name: Lincoln, Andrea
  last_name: Lincoln
- first_name: Barna
  full_name: Saha, Barna
  last_name: Saha
citation:
  ama: 'Henzinger M, Lincoln A, Saha B. The complexity of average-case dynamic subgraph
    counting. In: <i>33rd Annual ACM-SIAM Symposium on Discrete Algorithms</i>. Society
    for Industrial and Applied Mathematics; 2022:459-498. doi:<a href="https://doi.org/10.1137/1.9781611977073.23">10.1137/1.9781611977073.23</a>'
  apa: 'Henzinger, M., Lincoln, A., &#38; Saha, B. (2022). The complexity of average-case
    dynamic subgraph counting. In <i>33rd Annual ACM-SIAM Symposium on Discrete Algorithms</i>
    (pp. 459–498). Alexandria, VA, United States: Society for Industrial and Applied
    Mathematics. <a href="https://doi.org/10.1137/1.9781611977073.23">https://doi.org/10.1137/1.9781611977073.23</a>'
  chicago: Henzinger, Monika, Andrea Lincoln, and Barna Saha. “The Complexity of Average-Case
    Dynamic Subgraph Counting.” In <i>33rd Annual ACM-SIAM Symposium on Discrete Algorithms</i>,
    459–98. Society for Industrial and Applied Mathematics, 2022. <a href="https://doi.org/10.1137/1.9781611977073.23">https://doi.org/10.1137/1.9781611977073.23</a>.
  ieee: M. Henzinger, A. Lincoln, and B. Saha, “The complexity of average-case dynamic
    subgraph counting,” in <i>33rd Annual ACM-SIAM Symposium on Discrete Algorithms</i>,
    Alexandria, VA, United States, 2022, pp. 459–498.
  ista: 'Henzinger M, Lincoln A, Saha B. 2022. The complexity of average-case dynamic
    subgraph counting. 33rd Annual ACM-SIAM Symposium on Discrete Algorithms. SODA:
    Symposium on Discrete Algorithms, 459–498.'
  mla: Henzinger, Monika, et al. “The Complexity of Average-Case Dynamic Subgraph
    Counting.” <i>33rd Annual ACM-SIAM Symposium on Discrete Algorithms</i>, Society
    for Industrial and Applied Mathematics, 2022, pp. 459–98, doi:<a href="https://doi.org/10.1137/1.9781611977073.23">10.1137/1.9781611977073.23</a>.
  short: M. Henzinger, A. Lincoln, B. Saha, in:, 33rd Annual ACM-SIAM Symposium on
    Discrete Algorithms, Society for Industrial and Applied Mathematics, 2022, pp.
    459–498.
conference:
  end_date: 2022-01-12
  location: Alexandria, VA, United States
  name: 'SODA: Symposium on Discrete Algorithms'
  start_date: 2022-01-09
date_created: 2022-08-18T07:26:19Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2024-11-06T12:25:50Z
day: '01'
doi: 10.1137/1.9781611977073.23
extern: '1'
fulldoi: https://doi.org/10.1137/1.9781611977073.23
language:
- iso: eng
month: '01'
oa_version: None
page: 459-498
publication: 33rd Annual ACM-SIAM Symposium on Discrete Algorithms
publication_identifier:
  eisbn:
  - 978-1-61197-707-3
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: The complexity of average-case dynamic subgraph counting
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '11930'
abstract:
- lang: eng
  text: We present a practically efficient algorithm for maintaining a global minimum
    cut in large dynamic graphs under both edge insertions and deletions. While there
    has been theoretical work on this problem, our algorithm is the first implementation
    of a fully-dynamic algorithm. The algorithm uses the theoretical foundation and
    combines it with efficient and finely-tuned implementations to give an algorithm
    that can maintain the global minimum cut of a graph with rapid update times. We
    show that our algorithm gives up to multiple orders of magnitude speedup compared
    to static approaches both on edge insertions and deletions.
article_processing_charge: No
arxiv: 1
author:
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Alexander
  full_name: Noe, Alexander
  last_name: Noe
- first_name: Christian
  full_name: Schulz, Christian
  last_name: Schulz
citation:
  ama: 'Henzinger M, Noe A, Schulz C. Practical fully dynamic minimum cut algorithms.
    In: <i>2022 Proceedings of the Symposium on Algorithm Engineering and Experiments</i>.
    Society for Industrial and Applied Mathematics; 2022:13-26. doi:<a href="https://doi.org/10.1137/1.9781611977042.2">10.1137/1.9781611977042.2</a>'
  apa: 'Henzinger, M., Noe, A., &#38; Schulz, C. (2022). Practical fully dynamic minimum
    cut algorithms. In <i>2022 Proceedings of the Symposium on Algorithm Engineering
    and Experiments</i> (pp. 13–26). Alexandria, VA, United States: Society for Industrial
    and Applied Mathematics. <a href="https://doi.org/10.1137/1.9781611977042.2">https://doi.org/10.1137/1.9781611977042.2</a>'
  chicago: Henzinger, Monika, Alexander Noe, and Christian Schulz. “Practical Fully
    Dynamic Minimum Cut Algorithms.” In <i>2022 Proceedings of the Symposium on Algorithm
    Engineering and Experiments</i>, 13–26. Society for Industrial and Applied Mathematics,
    2022. <a href="https://doi.org/10.1137/1.9781611977042.2">https://doi.org/10.1137/1.9781611977042.2</a>.
  ieee: M. Henzinger, A. Noe, and C. Schulz, “Practical fully dynamic minimum cut
    algorithms,” in <i>2022 Proceedings of the Symposium on Algorithm Engineering
    and Experiments</i>, Alexandria, VA, United States, 2022, pp. 13–26.
  ista: 'Henzinger M, Noe A, Schulz C. 2022. Practical fully dynamic minimum cut algorithms.
    2022 Proceedings of the Symposium on Algorithm Engineering and Experiments. ALENEX:
    Symposium on Algorithm Engineering and Experiments, 13–26.'
  mla: Henzinger, Monika, et al. “Practical Fully Dynamic Minimum Cut Algorithms.”
    <i>2022 Proceedings of the Symposium on Algorithm Engineering and Experiments</i>,
    Society for Industrial and Applied Mathematics, 2022, pp. 13–26, doi:<a href="https://doi.org/10.1137/1.9781611977042.2">10.1137/1.9781611977042.2</a>.
  short: M. Henzinger, A. Noe, C. Schulz, in:, 2022 Proceedings of the Symposium on
    Algorithm Engineering and Experiments, Society for Industrial and Applied Mathematics,
    2022, pp. 13–26.
conference:
  end_date: 2022-01-10
  location: Alexandria, VA, United States
  name: 'ALENEX: Symposium on Algorithm Engineering and Experiments'
  start_date: 2022-01-09
date_created: 2022-08-19T07:27:51Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2024-11-06T12:26:51Z
day: '01'
doi: 10.1137/1.9781611977042.2
extern: '1'
external_id:
  arxiv:
  - '2101.05033'
fulldoi: https://doi.org/10.1137/1.9781611977042.2
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2101.05033
month: '01'
oa: 1
oa_version: Preprint
page: 13-26
publication: 2022 Proceedings of the Symposium on Algorithm Engineering and Experiments
publication_identifier:
  eisbn:
  - 978-1-61197-704-2
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Practical fully dynamic minimum cut algorithms
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2022'
...
---
_id: '11938'
abstract:
- lang: eng
  text: A matching is compatible to two or more labeled point sets of size n with
    labels {1, . . . , n} if its straight-line drawing on each of these point sets
    is crossing-free. We study the maximum number of edges in a matching compatible
    to two or more labeled point sets in general position in the plane. We show that
    for any two labeled sets of n points in convex position there exists a compatible
    matching with ⌊√2n + 1 − 1⌋ edges. More generally, for any ℓ labeled point sets
    we construct compatible matchings of size Ω(n1/ℓ). As a corresponding upper bound,
    we use probabilistic arguments to show that for any ℓ given sets of n points there
    exists a labeling of each set such that the largest compatible matching has O(n2/(ℓ+1))
    edges. Finally, we show that Θ(log n) copies of any set of n points are necessary
    and sufficient for the existence of labelings of these point sets such that any
    compatible matching consists only of a single edge.
acknowledgement: 'A.A. funded by the Marie Sklodowska-Curie grant agreement No 754411.
  Z.M. partially funded by Wittgenstein Prize, Austrian Science Fund (FWF), grant
  no. Z 342-N31. I.P., D.P., and B.V. partially supported by FWF within the collaborative
  DACH project Arrangements and Drawings as FWF project I 3340-N35. A.P. supported
  by a Schrödinger fellowship of the FWF: J-3847-N35. J.T. partially supported by
  ERC Start grant no. (279307: Graph Games), FWF grant no. P23499-N23 and S11407-N23
  (RiSE).'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Oswin
  full_name: Aichholzer, Oswin
  last_name: Aichholzer
- first_name: Alan M
  full_name: Arroyo Guevara, Alan M
  id: 3207FDC6-F248-11E8-B48F-1D18A9856A87
  last_name: Arroyo Guevara
  orcid: 0000-0003-2401-8670
- first_name: Zuzana
  full_name: Masárová, Zuzana
  id: 45CFE238-F248-11E8-B48F-1D18A9856A87
  last_name: Masárová
  orcid: 0000-0002-6660-1322
- first_name: Irene
  full_name: Parada, Irene
  last_name: Parada
- first_name: Daniel
  full_name: Perz, Daniel
  last_name: Perz
- first_name: Alexander
  full_name: Pilz, Alexander
  last_name: Pilz
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Birgit
  full_name: Vogtenhuber, Birgit
  last_name: Vogtenhuber
citation:
  ama: Aichholzer O, Arroyo Guevara AM, Masárová Z, et al. On compatible matchings.
    <i>Journal of Graph Algorithms and Applications</i>. 2022;26(2):225-240. doi:<a
    href="https://doi.org/10.7155/jgaa.00591">10.7155/jgaa.00591</a>
  apa: Aichholzer, O., Arroyo Guevara, A. M., Masárová, Z., Parada, I., Perz, D.,
    Pilz, A., … Vogtenhuber, B. (2022). On compatible matchings. <i>Journal of Graph
    Algorithms and Applications</i>. Brown University. <a href="https://doi.org/10.7155/jgaa.00591">https://doi.org/10.7155/jgaa.00591</a>
  chicago: Aichholzer, Oswin, Alan M Arroyo Guevara, Zuzana Masárová, Irene Parada,
    Daniel Perz, Alexander Pilz, Josef Tkadlec, and Birgit Vogtenhuber. “On Compatible
    Matchings.” <i>Journal of Graph Algorithms and Applications</i>. Brown University,
    2022. <a href="https://doi.org/10.7155/jgaa.00591">https://doi.org/10.7155/jgaa.00591</a>.
  ieee: O. Aichholzer <i>et al.</i>, “On compatible matchings,” <i>Journal of Graph
    Algorithms and Applications</i>, vol. 26, no. 2. Brown University, pp. 225–240,
    2022.
  ista: Aichholzer O, Arroyo Guevara AM, Masárová Z, Parada I, Perz D, Pilz A, Tkadlec
    J, Vogtenhuber B. 2022. On compatible matchings. Journal of Graph Algorithms and
    Applications. 26(2), 225–240.
  mla: Aichholzer, Oswin, et al. “On Compatible Matchings.” <i>Journal of Graph Algorithms
    and Applications</i>, vol. 26, no. 2, Brown University, 2022, pp. 225–40, doi:<a
    href="https://doi.org/10.7155/jgaa.00591">10.7155/jgaa.00591</a>.
  short: O. Aichholzer, A.M. Arroyo Guevara, Z. Masárová, I. Parada, D. Perz, A. Pilz,
    J. Tkadlec, B. Vogtenhuber, Journal of Graph Algorithms and Applications 26 (2022)
    225–240.
corr_author: '1'
date_created: 2022-08-21T22:01:56Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2026-04-16T09:18:20Z
day: '01'
ddc:
- '000'
department:
- _id: UlWa
- _id: HeEd
- _id: KrCh
doi: 10.7155/jgaa.00591
ec_funded: 1
external_id:
  arxiv:
  - '2101.03928'
file:
- access_level: open_access
  checksum: dc6e255e3558faff924fd9e370886c11
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-22T06:42:42Z
  date_updated: 2022-08-22T06:42:42Z
  file_id: '11940'
  file_name: 2022_JourGraphAlgorithmsApplic_Aichholzer.pdf
  file_size: 694538
  relation: main_file
  success: 1
file_date_updated: 2022-08-22T06:42:42Z
fulldoi: https://doi.org/10.7155/jgaa.00591
has_accepted_license: '1'
intvolume: '        26'
issue: '2'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 225-240
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2584A770-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P 23499-N23
  name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: S11407
  name: Game Theory
publication: Journal of Graph Algorithms and Applications
publication_identifier:
  issn:
  - 1526-1719
publication_status: published
publisher: Brown University
quality_controlled: '1'
related_material:
  record:
  - id: '9296'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: On compatible matchings
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2022'
...
---
OA_place: publisher
_id: '11945'
abstract:
- lang: eng
  text: "G protein-coupled receptors (GPCRs) respond to specific ligands and regulate
    multiple processes ranging from cell growth and immune responses to neuronal signal
    transmission. However, ligands for many GPCRs remain unknown, suffer from off-target
    effects or have poor bioavailability. Additional challenges exist to dissect cell-type
    specific responses when the same GPCR is expressed on several cell types within
    the body. Here, we overcome these limitations by engineering DREADD-based GPCR
    chimeras that selectively bind their agonist clozapine-N-oxide (CNO) and mimic
    a GPCR-of-interest in a desired cell type.\r\nWe validated our approach with β2-adrenergic
    receptor (β2AR/ADRB2) and show that our chimeric DREADD-β2AR triggers comparable
    responses on second messenger and kinase activity, post-translational modifications,
    and protein-protein interactions. Since β2AR is also enriched in microglia, which
    can drive inflammation in the central nervous system, we expressed chimeric DREADD-β2AR
    in primary microglia and successfully recapitulate β2AR-mediated filopodia formation
    through CNO stimulation. To dissect the role of selected GPCRs during microglial
    inflammation, we additionally generated DREADD-based chimeras for microglia-enriched
    GPR65 and GPR109A/HCAR2. In a microglia cell line, DREADD-β2AR and DREADD-GPR65
    both modulated the inflammatory response with a similar profile as endogenously
    expressed β2AR, while DREADD-GPR109A showed no impact.\r\nOur DREADD-based approach
    provides the means to obtain mechanistic and functional insights into GPCR signaling
    on a cell-type specific level."
acknowledged_ssus:
- _id: Bio
- _id: PreCl
- _id: LifeSc
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Rouven
  full_name: Schulz, Rouven
  id: 4C5E7B96-F248-11E8-B48F-1D18A9856A87
  last_name: Schulz
  orcid: 0000-0001-5297-733X
citation:
  ama: Schulz R. Chimeric G protein-coupled receptors mimic distinct signaling pathways
    and modulate microglia function. 2022. doi:<a href="https://doi.org/10.15479/at:ista:11945">10.15479/at:ista:11945</a>
  apa: Schulz, R. (2022). <i>Chimeric G protein-coupled receptors mimic distinct signaling
    pathways and modulate microglia function</i>. Institute of Science and Technology
    Austria. <a href="https://doi.org/10.15479/at:ista:11945">https://doi.org/10.15479/at:ista:11945</a>
  chicago: Schulz, Rouven. “Chimeric G Protein-Coupled Receptors Mimic Distinct Signaling
    Pathways and Modulate Microglia Function.” Institute of Science and Technology
    Austria, 2022. <a href="https://doi.org/10.15479/at:ista:11945">https://doi.org/10.15479/at:ista:11945</a>.
  ieee: R. Schulz, “Chimeric G protein-coupled receptors mimic distinct signaling
    pathways and modulate microglia function,” Institute of Science and Technology
    Austria, 2022.
  ista: Schulz R. 2022. Chimeric G protein-coupled receptors mimic distinct signaling
    pathways and modulate microglia function. Institute of Science and Technology
    Austria.
  mla: Schulz, Rouven. <i>Chimeric G Protein-Coupled Receptors Mimic Distinct Signaling
    Pathways and Modulate Microglia Function</i>. Institute of Science and Technology
    Austria, 2022, doi:<a href="https://doi.org/10.15479/at:ista:11945">10.15479/at:ista:11945</a>.
  short: R. Schulz, Chimeric G Protein-Coupled Receptors Mimic Distinct Signaling
    Pathways and Modulate Microglia Function, Institute of Science and Technology
    Austria, 2022.
corr_author: '1'
date_created: 2022-08-23T11:33:11Z
date_published: 2022-08-23T00:00:00Z
date_updated: 2026-04-07T14:17:59Z
day: '23'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: GradSch
- _id: SaSi
doi: 10.15479/at:ista:11945
file:
- access_level: open_access
  checksum: 61b1b666a210ff7cdd0e95ea75207a13
  content_type: application/pdf
  creator: rschulz
  date_created: 2022-08-25T08:59:57Z
  date_updated: 2022-08-25T08:59:57Z
  file_id: '11970'
  file_name: Thesis_Rouven_Schulz_2022_final.pdf
  file_size: 28079331
  relation: main_file
  success: 1
- access_level: closed
  checksum: 2b8f95ea1c134dbdb927b41b1dbeeeb5
  content_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document
  creator: rschulz
  date_created: 2022-08-25T09:00:11Z
  date_updated: 2022-08-25T09:33:31Z
  file_id: '11971'
  file_name: Thesis_Rouven_Schulz_2022_final.docx
  file_size: 27226963
  relation: source_file
file_date_updated: 2022-08-25T09:33:31Z
fulldoi: https://doi.org/10.15479/at:ista:11945
has_accepted_license: '1'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: '133'
project:
- _id: 267F75D8-B435-11E9-9278-68D0E5697425
  name: Modulating microglia through G protein-coupled receptor (GPCR) signaling
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '11995'
    relation: dissertation_contains
    status: public
status: public
supervisor:
- first_name: Sandra
  full_name: Siegert, Sandra
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
title: Chimeric G protein-coupled receptors mimic distinct signaling pathways and
  modulate microglia function
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2022'
...
---
_id: '11951'
abstract:
- lang: eng
  text: The mammalian hippocampal formation (HF) plays a key role in several higher
    brain functions, such as spatial coding, learning and memory. Its simple circuit
    architecture is often viewed as a trisynaptic loop, processing input originating
    from the superficial layers of the entorhinal cortex (EC) and sending it back
    to its deeper layers. Here, we show that excitatory neurons in layer 6b of the
    mouse EC project to all sub-regions comprising the HF and receive input from the
    CA1, thalamus and claustrum. Furthermore, their output is characterized by unique
    slow-decaying excitatory postsynaptic currents capable of driving plateau-like
    potentials in their postsynaptic targets. Optogenetic inhibition of the EC-6b
    pathway affects spatial coding in CA1 pyramidal neurons, while cell ablation impairs
    not only acquisition of new spatial memories, but also degradation of previously
    acquired ones. Our results provide evidence of a functional role for cortical
    layer 6b neurons in the adult brain.
acknowledged_ssus:
- _id: Bio
- _id: SSU
acknowledgement: We thank F. Marr and A. Schlögl for technical assistance, E. Kralli-Beller
  for manuscript editing, as well as C. Sommer and the Imaging and Optics Facility
  of the Institute of Science and Technology Austria (ISTA) for image analysis scripts
  and microscopy support. We extend our gratitude to J. Wallenschus and D. Rangel
  Guerrero for technical assistance acquiring single-unit data and I. Gridchyn for
  help with single-unit clustering. Finally, we also thank B. Suter for discussions,
  A. Saunders, M. Jösch, and H. Monyer for critically reading earlier versions of
  the manuscript, C. Petersen for sharing clearing protocols, and the Scientific Service
  Units of ISTA for efficient support. This project was funded by the European Research
  Council (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (ERC advanced grant No 692692 to P.J.) and the Fond zur Förderung der Wissenschaftlichen
  Forschung (Z 312-B27, Wittgenstein award for P.J. and I3600-B27 for J.G.D. and P.V.).
article_number: '4826'
article_processing_charge: No
article_type: original
author:
- first_name: Yoav
  full_name: Ben Simon, Yoav
  id: 43DF3136-F248-11E8-B48F-1D18A9856A87
  last_name: Ben Simon
- first_name: Karola
  full_name: Käfer, Karola
  id: 2DAA49AA-F248-11E8-B48F-1D18A9856A87
  last_name: Käfer
- first_name: Philipp
  full_name: Velicky, Philipp
  id: 39BDC62C-F248-11E8-B48F-1D18A9856A87
  last_name: Velicky
  orcid: 0000-0002-2340-7431
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Ben Simon Y, Käfer K, Velicky P, Csicsvari JL, Danzl JG, Jonas PM. A direct
    excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes
    to spatial coding and memory. <i>Nature Communications</i>. 2022;13. doi:<a href="https://doi.org/10.1038/s41467-022-32559-8">10.1038/s41467-022-32559-8</a>
  apa: Ben Simon, Y., Käfer, K., Velicky, P., Csicsvari, J. L., Danzl, J. G., &#38;
    Jonas, P. M. (2022). A direct excitatory projection from entorhinal layer 6b neurons
    to the hippocampus contributes to spatial coding and memory. <i>Nature Communications</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41467-022-32559-8">https://doi.org/10.1038/s41467-022-32559-8</a>
  chicago: Ben Simon, Yoav, Karola Käfer, Philipp Velicky, Jozsef L Csicsvari, Johann
    G Danzl, and Peter M Jonas. “A Direct Excitatory Projection from Entorhinal Layer
    6b Neurons to the Hippocampus Contributes to Spatial Coding and Memory.” <i>Nature
    Communications</i>. Springer Nature, 2022. <a href="https://doi.org/10.1038/s41467-022-32559-8">https://doi.org/10.1038/s41467-022-32559-8</a>.
  ieee: Y. Ben Simon, K. Käfer, P. Velicky, J. L. Csicsvari, J. G. Danzl, and P. M.
    Jonas, “A direct excitatory projection from entorhinal layer 6b neurons to the
    hippocampus contributes to spatial coding and memory,” <i>Nature Communications</i>,
    vol. 13. Springer Nature, 2022.
  ista: Ben Simon Y, Käfer K, Velicky P, Csicsvari JL, Danzl JG, Jonas PM. 2022. A
    direct excitatory projection from entorhinal layer 6b neurons to the hippocampus
    contributes to spatial coding and memory. Nature Communications. 13, 4826.
  mla: Ben Simon, Yoav, et al. “A Direct Excitatory Projection from Entorhinal Layer
    6b Neurons to the Hippocampus Contributes to Spatial Coding and Memory.” <i>Nature
    Communications</i>, vol. 13, 4826, Springer Nature, 2022, doi:<a href="https://doi.org/10.1038/s41467-022-32559-8">10.1038/s41467-022-32559-8</a>.
  short: Y. Ben Simon, K. Käfer, P. Velicky, J.L. Csicsvari, J.G. Danzl, P.M. Jonas,
    Nature Communications 13 (2022).
corr_author: '1'
date_created: 2022-08-24T08:25:50Z
date_published: 2022-08-16T00:00:00Z
date_updated: 2025-06-12T06:10:44Z
day: '16'
ddc:
- '570'
department:
- _id: JoCs
- _id: PeJo
- _id: JoDa
doi: 10.1038/s41467-022-32559-8
ec_funded: 1
external_id:
  isi:
  - '000841396400008'
  pmid:
  - '35974109'
file:
- access_level: open_access
  checksum: 405936d9e4d33625d80c093c9713a91f
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-26T11:51:40Z
  date_updated: 2022-08-26T11:51:40Z
  file_id: '11990'
  file_name: 2022_NatureCommunications_BenSimon.pdf
  file_size: 5910357
  relation: main_file
  success: 1
file_date_updated: 2022-08-26T11:51:40Z
fulldoi: https://doi.org/10.1038/s41467-022-32559-8
has_accepted_license: '1'
intvolume: '        13'
isi: 1
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glutamatergic synapse
- _id: 265CB4D0-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03600
  name: Optical control of synaptic function via adhesion molecules
- _id: 25C5A090-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00312
  name: Synaptic communication in neuronal microcircuits
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus
  contributes to spatial coding and memory
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2022'
...
---
_id: '11955'
abstract:
- lang: eng
  text: Covalent organic frameworks (COFs) are structurally tuneable, porous and crystalline
    polymers constructed through the covalent attachment of small organic building
    blocks as elementary units. Using the myriad of such building blocks, a broad
    spectrum of functionalities has been applied for COF syntheses for broad applications,
    including heterogeneous catalysis. Herein, we report the synthesis of a new family
    of porous and crystalline COFs using a novel acridine linker and benzene-1,3,5-tricarbaldehyde
    derivatives bearing a variable number of hydroxy groups. With the broad absorption
    in the visible light region, the COFs were applied as photocatalysts in metallaphotocatalytic
    C−N cross-coupling. The fully β-ketoenamine linked COF showed the highest activity,
    due to the increased charge separation upon irradiation. The COF showed good to
    excellent yields for several aryl bromides, good recyclability and even catalyzed
    the organic transformation in presence of green light as energy source.
article_number: e202117738
article_processing_charge: No
article_type: original
author:
- first_name: Michael
  full_name: Traxler, Michael
  last_name: Traxler
- first_name: Sebastian
  full_name: Gisbertz, Sebastian
  last_name: Gisbertz
- first_name: Pradip
  full_name: Pachfule, Pradip
  last_name: Pachfule
- first_name: Johannes
  full_name: Schmidt, Johannes
  last_name: Schmidt
- first_name: Jérôme
  full_name: Roeser, Jérôme
  last_name: Roeser
- first_name: Susanne
  full_name: Reischauer, Susanne
  last_name: Reischauer
- first_name: Jabor
  full_name: Rabeah, Jabor
  last_name: Rabeah
- first_name: Bartholomäus
  full_name: Pieber, Bartholomäus
  id: 93e5e5b2-0da6-11ed-8a41-af589a024726
  last_name: Pieber
  orcid: 0000-0001-8689-388X
- first_name: Arne
  full_name: Thomas, Arne
  last_name: Thomas
citation:
  ama: Traxler M, Gisbertz S, Pachfule P, et al. Acridine‐functionalized covalent
    organic frameworks (COFs) as photocatalysts for metallaphotocatalytic C−N cross‐coupling.
    <i>Angewandte Chemie International Edition</i>. 2022;61(21). doi:<a href="https://doi.org/10.1002/anie.202117738">10.1002/anie.202117738</a>
  apa: Traxler, M., Gisbertz, S., Pachfule, P., Schmidt, J., Roeser, J., Reischauer,
    S., … Thomas, A. (2022). Acridine‐functionalized covalent organic frameworks (COFs)
    as photocatalysts for metallaphotocatalytic C−N cross‐coupling. <i>Angewandte
    Chemie International Edition</i>. Wiley. <a href="https://doi.org/10.1002/anie.202117738">https://doi.org/10.1002/anie.202117738</a>
  chicago: Traxler, Michael, Sebastian Gisbertz, Pradip Pachfule, Johannes Schmidt,
    Jérôme Roeser, Susanne Reischauer, Jabor Rabeah, Bartholomäus Pieber, and Arne
    Thomas. “Acridine‐functionalized Covalent Organic Frameworks (COFs) as Photocatalysts
    for Metallaphotocatalytic C−N Cross‐coupling.” <i>Angewandte Chemie International
    Edition</i>. Wiley, 2022. <a href="https://doi.org/10.1002/anie.202117738">https://doi.org/10.1002/anie.202117738</a>.
  ieee: M. Traxler <i>et al.</i>, “Acridine‐functionalized covalent organic frameworks
    (COFs) as photocatalysts for metallaphotocatalytic C−N cross‐coupling,” <i>Angewandte
    Chemie International Edition</i>, vol. 61, no. 21. Wiley, 2022.
  ista: Traxler M, Gisbertz S, Pachfule P, Schmidt J, Roeser J, Reischauer S, Rabeah
    J, Pieber B, Thomas A. 2022. Acridine‐functionalized covalent organic frameworks
    (COFs) as photocatalysts for metallaphotocatalytic C−N cross‐coupling. Angewandte
    Chemie International Edition. 61(21), e202117738.
  mla: Traxler, Michael, et al. “Acridine‐functionalized Covalent Organic Frameworks
    (COFs) as Photocatalysts for Metallaphotocatalytic C−N Cross‐coupling.” <i>Angewandte
    Chemie International Edition</i>, vol. 61, no. 21, e202117738, Wiley, 2022, doi:<a
    href="https://doi.org/10.1002/anie.202117738">10.1002/anie.202117738</a>.
  short: M. Traxler, S. Gisbertz, P. Pachfule, J. Schmidt, J. Roeser, S. Reischauer,
    J. Rabeah, B. Pieber, A. Thomas, Angewandte Chemie International Edition 61 (2022).
date_created: 2022-08-24T10:41:25Z
date_published: 2022-05-16T00:00:00Z
date_updated: 2024-10-14T11:42:54Z
day: '16'
doi: 10.1002/anie.202117738
extern: '1'
external_id:
  pmid:
  - '35188714'
fulldoi: https://doi.org/10.1002/anie.202117738
intvolume: '        61'
issue: '21'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/anie.202117738
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
  eissn:
  - 1521-3773
  issn:
  - 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Acridine‐functionalized covalent organic frameworks (COFs) as photocatalysts
  for metallaphotocatalytic C−N cross‐coupling
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 61
year: '2022'
...
---
_id: '11991'
abstract:
- lang: eng
  text: The study of the complexity of the constraint satisfaction problem (CSP),
    centred around the Feder-Vardi Dichotomy Conjecture, has been very prominent in
    the last two decades. After a long concerted effort and many partial results,
    the Dichotomy Conjecture has been proved in 2017 independently by Bulatov and
    Zhuk. At about the same time, a vast generalisation of CSP, called promise CSP,
    has started to gain prominence. In this survey, we explain the importance of promise
    CSP and highlight many new very interesting features that the study of promise
    CSP has brought to light. The complexity classification quest for the promise
    CSP is wide open, and we argue that, despite the promise CSP being more general,
    this quest is rather more accessible to a wide range of researchers than the dichotomy-led
    study of the CSP has been.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Andrei
  full_name: Krokhin, Andrei
  last_name: Krokhin
- first_name: Jakub
  full_name: Opršal, Jakub
  id: ec596741-c539-11ec-b829-c79322a91242
  last_name: Opršal
  orcid: 0000-0003-1245-3456
citation:
  ama: Krokhin A, Opršal J. An invitation to the promise constraint satisfaction problem.
    <i>ACM SIGLOG News</i>. 2022;9(3):30-59. doi:<a href="https://doi.org/10.1145/3559736.3559740">10.1145/3559736.3559740</a>
  apa: Krokhin, A., &#38; Opršal, J. (2022). An invitation to the promise constraint
    satisfaction problem. <i>ACM SIGLOG News</i>. Association for Computing Machinery.
    <a href="https://doi.org/10.1145/3559736.3559740">https://doi.org/10.1145/3559736.3559740</a>
  chicago: Krokhin, Andrei, and Jakub Opršal. “An Invitation to the Promise Constraint
    Satisfaction Problem.” <i>ACM SIGLOG News</i>. Association for Computing Machinery,
    2022. <a href="https://doi.org/10.1145/3559736.3559740">https://doi.org/10.1145/3559736.3559740</a>.
  ieee: A. Krokhin and J. Opršal, “An invitation to the promise constraint satisfaction
    problem,” <i>ACM SIGLOG News</i>, vol. 9, no. 3. Association for Computing Machinery,
    pp. 30–59, 2022.
  ista: Krokhin A, Opršal J. 2022. An invitation to the promise constraint satisfaction
    problem. ACM SIGLOG News. 9(3), 30–59.
  mla: Krokhin, Andrei, and Jakub Opršal. “An Invitation to the Promise Constraint
    Satisfaction Problem.” <i>ACM SIGLOG News</i>, vol. 9, no. 3, Association for
    Computing Machinery, 2022, pp. 30–59, doi:<a href="https://doi.org/10.1145/3559736.3559740">10.1145/3559736.3559740</a>.
  short: A. Krokhin, J. Opršal, ACM SIGLOG News 9 (2022) 30–59.
date_created: 2022-08-27T11:23:37Z
date_published: 2022-07-01T00:00:00Z
date_updated: 2022-09-05T08:19:38Z
day: '01'
department:
- _id: UlWa
doi: 10.1145/3559736.3559740
external_id:
  arxiv:
  - '2208.13538'
fulldoi: https://doi.org/10.1145/3559736.3559740
intvolume: '         9'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: http://arxiv.org/abs/2208.13538
month: '07'
oa: 1
oa_version: Preprint
page: 30-59
publication: ACM SIGLOG News
publication_identifier:
  issn:
  - 2372-3491
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
status: public
title: An invitation to the promise constraint satisfaction problem
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2022'
...
---
_id: '11993'
abstract:
- lang: eng
  text: Moulding refers to a set of manufacturing techniques in which a mould, usually
    a cavity or a solid frame, is used to shape a liquid or pliable material into
    an object of the desired shape. The popularity of moulding comes from its effectiveness,
    scalability and versatility in terms of employed materials. Its relevance as a
    fabrication process is demonstrated by the extensive literature covering different
    aspects related to mould design, from material flow simulation to the automation
    of mould geometry design. In this state-of-the-art report, we provide an extensive
    review of the automatic methods for the design of moulds, focusing on contributions
    from a geometric perspective. We classify existing mould design methods based
    on their computational approach and the nature of their target moulding process.
    We summarize the relationships between computational approaches and moulding techniques,
    highlighting their strengths and limitations. Finally, we discuss potential future
    research directions.
article_processing_charge: No
article_type: original
author:
- first_name: Thomas
  full_name: Alderighi, Thomas
  last_name: Alderighi
- first_name: Luigi
  full_name: Malomo, Luigi
  last_name: Malomo
- first_name: Thomas
  full_name: Auzinger, Thomas
  id: 4718F954-F248-11E8-B48F-1D18A9856A87
  last_name: Auzinger
  orcid: 0000-0002-1546-3265
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Paulo
  full_name: Cignoni, Paulo
  last_name: Cignoni
- first_name: Nico
  full_name: Pietroni, Nico
  last_name: Pietroni
citation:
  ama: Alderighi T, Malomo L, Auzinger T, Bickel B, Cignoni P, Pietroni N. State of
    the art in computational mould design. <i>Computer Graphics Forum</i>. 2022;41(6):435-452.
    doi:<a href="https://doi.org/10.1111/cgf.14581">10.1111/cgf.14581</a>
  apa: Alderighi, T., Malomo, L., Auzinger, T., Bickel, B., Cignoni, P., &#38; Pietroni,
    N. (2022). State of the art in computational mould design. <i>Computer Graphics
    Forum</i>. Wiley. <a href="https://doi.org/10.1111/cgf.14581">https://doi.org/10.1111/cgf.14581</a>
  chicago: Alderighi, Thomas, Luigi Malomo, Thomas Auzinger, Bernd Bickel, Paulo Cignoni,
    and Nico Pietroni. “State of the Art in Computational Mould Design.” <i>Computer
    Graphics Forum</i>. Wiley, 2022. <a href="https://doi.org/10.1111/cgf.14581">https://doi.org/10.1111/cgf.14581</a>.
  ieee: T. Alderighi, L. Malomo, T. Auzinger, B. Bickel, P. Cignoni, and N. Pietroni,
    “State of the art in computational mould design,” <i>Computer Graphics Forum</i>,
    vol. 41, no. 6. Wiley, pp. 435–452, 2022.
  ista: Alderighi T, Malomo L, Auzinger T, Bickel B, Cignoni P, Pietroni N. 2022.
    State of the art in computational mould design. Computer Graphics Forum. 41(6),
    435–452.
  mla: Alderighi, Thomas, et al. “State of the Art in Computational Mould Design.”
    <i>Computer Graphics Forum</i>, vol. 41, no. 6, Wiley, 2022, pp. 435–52, doi:<a
    href="https://doi.org/10.1111/cgf.14581">10.1111/cgf.14581</a>.
  short: T. Alderighi, L. Malomo, T. Auzinger, B. Bickel, P. Cignoni, N. Pietroni,
    Computer Graphics Forum 41 (2022) 435–452.
corr_author: '1'
date_created: 2022-08-28T18:17:01Z
date_published: 2022-09-01T00:00:00Z
date_updated: 2024-10-09T21:03:21Z
day: '01'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1111/cgf.14581
external_id:
  isi:
  - '000842638900001'
file:
- access_level: open_access
  checksum: c40cc8ceb7b7f0512172b883d712198e
  content_type: application/pdf
  creator: bbickel
  date_created: 2022-08-28T18:18:08Z
  date_updated: 2022-08-28T18:18:08Z
  description: 'This is the pre-peer reviewed version of the following article: Alderighi,
    T., Malomo, L., Auzinger, T., Bickel, B., Cignoni, P. and Pietroni, N. (2022),
    State of the Art in Computational Mould Design. Computer Graphics Forum, which
    has been published in final form at https://doi.org/10.1111/cgf.14581. This article
    may be used for non-commercial purposes in accordance with Wiley Terms and Conditions
    for Use of Self-Archived Versions.'
  file_id: '11994'
  file_name: star_molding_preprint.pdf
  file_size: 32480850
  relation: main_file
  title: pre-peer reviewed version
file_date_updated: 2022-08-28T18:18:08Z
fulldoi: https://doi.org/10.1111/cgf.14581
has_accepted_license: '1'
intvolume: '        41'
isi: 1
issue: '6'
keyword:
- Computer Graphics and Computer-Aided Design
language:
- iso: eng
month: '09'
oa: 1
oa_version: Submitted Version
page: 435-452
publication: Computer Graphics Forum
publication_identifier:
  eissn:
  - 1467-8659
  issn:
  - 0167-7055
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: State of the art in computational mould design
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2022'
...
---
_id: '11995'
abstract:
- lang: eng
  text: G protein-coupled receptors (GPCRs) regulate processes ranging from immune
    responses to neuronal signaling. However, ligands for many GPCRs remain unknown,
    suffer from off-target effects or have poor bioavailability. Additionally, dissecting
    cell type-specific responses is challenging when the same GPCR is expressed on
    different cells within a tissue. Here, we overcome these limitations by engineering
    DREADD-based GPCR chimeras that bind clozapine-N-oxide and mimic a GPCR-of-interest.
    We show that chimeric DREADD-β2AR triggers responses comparable to β2AR on second
    messenger and kinase activity, post-translational modifications, and protein-protein
    interactions. Moreover, we successfully recapitulate β2AR-mediated filopodia formation
    in microglia, an immune cell capable of driving central nervous system inflammation.
    When dissecting microglial inflammation, we included two additional DREADD-based
    chimeras mimicking microglia-enriched GPR65 and GPR109A. DREADD-β2AR and DREADD-GPR65
    modulate the inflammatory response with high similarity to endogenous β2AR, while
    DREADD-GPR109A shows no impact. Our DREADD-based approach allows investigation
    of cell type-dependent pathways without known endogenous ligands.
acknowledged_ssus:
- _id: PreCl
- _id: Bio
- _id: LifeSc
acknowledgement: The authors thank the Scientific Service Units at ISTA, in particular
  the Molecular Biology Service of the Lab Support Facility, Imaging & Optics Facility,
  and the Preclinical Facility, and the Novarino group, Harald Janoviak, and Marco
  Benevento for sharing reagents and expertise. This research was supported by a DOC
  Fellowship (24979) awarded to R.S. by the Austrian Academy of Sciences.
article_number: '4728'
article_processing_charge: No
article_type: original
author:
- first_name: Rouven
  full_name: Schulz, Rouven
  id: 4C5E7B96-F248-11E8-B48F-1D18A9856A87
  last_name: Schulz
  orcid: 0000-0001-5297-733X
- first_name: Medina
  full_name: Korkut, Medina
  id: 4B51CE74-F248-11E8-B48F-1D18A9856A87
  last_name: Korkut
  orcid: 0000-0003-4309-2251
- first_name: Alessandro
  full_name: Venturino, Alessandro
  id: 41CB84B2-F248-11E8-B48F-1D18A9856A87
  last_name: Venturino
  orcid: 0000-0003-2356-9403
- first_name: Gloria
  full_name: Colombo, Gloria
  id: 3483CF6C-F248-11E8-B48F-1D18A9856A87
  last_name: Colombo
  orcid: 0000-0001-9434-8902
- first_name: Sandra
  full_name: Siegert, Sandra
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
citation:
  ama: Schulz R, Korkut M, Venturino A, Colombo G, Siegert S. Chimeric GPCRs mimic
    distinct signaling pathways and modulate microglia responses. <i>Nature Communications</i>.
    2022;13. doi:<a href="https://doi.org/10.1038/s41467-022-32390-1">10.1038/s41467-022-32390-1</a>
  apa: Schulz, R., Korkut, M., Venturino, A., Colombo, G., &#38; Siegert, S. (2022).
    Chimeric GPCRs mimic distinct signaling pathways and modulate microglia responses.
    <i>Nature Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-022-32390-1">https://doi.org/10.1038/s41467-022-32390-1</a>
  chicago: Schulz, Rouven, Medina Korkut, Alessandro Venturino, Gloria Colombo, and
    Sandra Siegert. “Chimeric GPCRs Mimic Distinct Signaling Pathways and Modulate
    Microglia Responses.” <i>Nature Communications</i>. Springer Nature, 2022. <a
    href="https://doi.org/10.1038/s41467-022-32390-1">https://doi.org/10.1038/s41467-022-32390-1</a>.
  ieee: R. Schulz, M. Korkut, A. Venturino, G. Colombo, and S. Siegert, “Chimeric
    GPCRs mimic distinct signaling pathways and modulate microglia responses,” <i>Nature
    Communications</i>, vol. 13. Springer Nature, 2022.
  ista: Schulz R, Korkut M, Venturino A, Colombo G, Siegert S. 2022. Chimeric GPCRs
    mimic distinct signaling pathways and modulate microglia responses. Nature Communications.
    13, 4728.
  mla: Schulz, Rouven, et al. “Chimeric GPCRs Mimic Distinct Signaling Pathways and
    Modulate Microglia Responses.” <i>Nature Communications</i>, vol. 13, 4728, Springer
    Nature, 2022, doi:<a href="https://doi.org/10.1038/s41467-022-32390-1">10.1038/s41467-022-32390-1</a>.
  short: R. Schulz, M. Korkut, A. Venturino, G. Colombo, S. Siegert, Nature Communications
    13 (2022).
corr_author: '1'
date_created: 2022-08-28T22:01:59Z
date_published: 2022-08-15T00:00:00Z
date_updated: 2026-04-07T14:17:58Z
day: '15'
ddc:
- '570'
department:
- _id: SaSi
doi: 10.1038/s41467-022-32390-1
external_id:
  isi:
  - '000840984400032'
  pmid:
  - '35970889'
file:
- access_level: open_access
  checksum: 191d9db0266e14a28d3a56dc7f65da84
  content_type: application/pdf
  creator: cchlebak
  date_created: 2022-08-29T06:44:30Z
  date_updated: 2022-08-29T06:44:30Z
  file_id: '12002'
  file_name: 2022_NatComm_Schulz.pdf
  file_size: 7317396
  relation: main_file
  success: 1
file_date_updated: 2022-08-29T06:44:30Z
fulldoi: https://doi.org/10.1038/s41467-022-32390-1
has_accepted_license: '1'
intvolume: '        13'
isi: 1
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 267F75D8-B435-11E9-9278-68D0E5697425
  name: Modulating microglia through G protein-coupled receptor (GPCR) signaling
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA website
    relation: press_release
    url: https://ista.ac.at/en/news/dreaddful-mimicry/
  record:
  - id: '11542'
    relation: research_data
    status: public
  - id: '11945'
    relation: part_of_dissertation
    status: public
scopus_import: '1'
status: public
title: Chimeric GPCRs mimic distinct signaling pathways and modulate microglia responses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2022'
...
---
_id: '11996'
abstract:
- lang: eng
  text: If you mix fruit syrups with alcohol to make a schnapps, the two liquids will
    remain perfectly blended forever. But if you mix oil with vinegar to make a vinaigrette,
    the oil and vinegar will soon separate back into their previous selves. Such liquid-liquid
    phase separation is a thermodynamically driven phenomenon and plays an important
    role in many biological processes (1). Although energy injection at the macroscale
    can reverse the phase separation—a strong shake is the normal response to a separated
    vinaigrette—little is known about the effect of energy added at the microscopic
    level on phase separation. This fundamental question has deep ramifications, notably
    in biology, because active processes also make the interior of a living cell different
    from a dead one. On page 768 of this issue, Adkins et al. (2) examine how mechanical
    activity at the microscopic scale affects liquid-liquid phase separation and allows
    liquids to climb surfaces.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Jérémie A
  full_name: Palacci, Jérémie A
  id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
  last_name: Palacci
  orcid: 0000-0002-7253-9465
citation:
  ama: Palacci JA. A soft active matter that can climb walls. <i>Science</i>. 2022;377(6607):710-711.
    doi:<a href="https://doi.org/10.1126/science.adc9202">10.1126/science.adc9202</a>
  apa: Palacci, J. A. (2022). A soft active matter that can climb walls. <i>Science</i>.
    American Association for the Advancement of Science. <a href="https://doi.org/10.1126/science.adc9202">https://doi.org/10.1126/science.adc9202</a>
  chicago: Palacci, Jérémie A. “A Soft Active Matter That Can Climb Walls.” <i>Science</i>.
    American Association for the Advancement of Science, 2022. <a href="https://doi.org/10.1126/science.adc9202">https://doi.org/10.1126/science.adc9202</a>.
  ieee: J. A. Palacci, “A soft active matter that can climb walls,” <i>Science</i>,
    vol. 377, no. 6607. American Association for the Advancement of Science, pp. 710–711,
    2022.
  ista: Palacci JA. 2022. A soft active matter that can climb walls. Science. 377(6607),
    710–711.
  mla: Palacci, Jérémie A. “A Soft Active Matter That Can Climb Walls.” <i>Science</i>,
    vol. 377, no. 6607, American Association for the Advancement of Science, 2022,
    pp. 710–11, doi:<a href="https://doi.org/10.1126/science.adc9202">10.1126/science.adc9202</a>.
  short: J.A. Palacci, Science 377 (2022) 710–711.
corr_author: '1'
date_created: 2022-08-28T22:02:00Z
date_published: 2022-08-12T00:00:00Z
date_updated: 2024-10-09T21:03:21Z
day: '12'
department:
- _id: JePa
doi: 10.1126/science.adc9202
external_id:
  pmid:
  - '35951689 '
fulldoi: https://doi.org/10.1126/science.adc9202
intvolume: '       377'
issue: '6607'
language:
- iso: eng
month: '08'
oa_version: None
page: 710-711
pmid: 1
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
  issn:
  - 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: A soft active matter that can climb walls
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 377
year: '2022'
...
---
_id: '11997'
abstract:
- lang: eng
  text: "We study the fate of an impurity in an ultracold heteronuclear Bose mixture,
    focusing on the experimentally relevant case of a ⁴¹K - ⁸⁷Rb mixture, with the
    impurity in a ⁴¹K hyperfine state. Our paper provides a comprehensive description
    of an impurity in a BEC mixture with contact interactions across its phase diagram.
    We present results for the miscible and immiscible regimes, as well as for the
    impurity in a self-bound quantum droplet. Here, varying the interactions, we find
    exotic states where the impurity localizes either at the center or\r\nat the surface
    of the droplet. "
acknowledgement: We thank A. Simoni for providing the calculations of the intercomponent
  scattering lengths. We gratefully acknowledge stimulating discussions with L. A.
  Peña Ardila, R. Schmidt, H. Silva, V. Zampronio, and M. Prevedelli for careful reading.
  G.B. acknowledges support from the Austrian Science Fund (FWF) under Project No.
  M2641-N27. T.M. acknowledges CNPq for support through Bolsa de produtividade em
  Pesquisa No. 311079/2015-6. This work is supported by the Deutsche Forschungsgemeinschaft
  (DFG, German Research Foundation) under Germany's Excellence Strategy No. EXC2181/1-390900948
  (the Heidelberg STRUCTURES Excellence Cluster). This work was supported by the Serrapilheira
  Institute (Grant No. Serra-1812-27802). We thank the High-Performance Computing
  Center (NPAD) at UFRN for providing computational resources.
article_number: '023301'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giacomo
  full_name: Bighin, Giacomo
  id: 4CA96FD4-F248-11E8-B48F-1D18A9856A87
  last_name: Bighin
  orcid: 0000-0001-8823-9777
- first_name: A.
  full_name: Burchianti, A.
  last_name: Burchianti
- first_name: F.
  full_name: Minardi, F.
  last_name: Minardi
- first_name: T.
  full_name: Macrì, T.
  last_name: Macrì
citation:
  ama: Bighin G, Burchianti A, Minardi F, Macrì T. Impurity in a heteronuclear two-component
    Bose mixture. <i>Physical Review A</i>. 2022;106(2). doi:<a href="https://doi.org/10.1103/PhysRevA.106.023301">10.1103/PhysRevA.106.023301</a>
  apa: Bighin, G., Burchianti, A., Minardi, F., &#38; Macrì, T. (2022). Impurity in
    a heteronuclear two-component Bose mixture. <i>Physical Review A</i>. American
    Physical Society. <a href="https://doi.org/10.1103/PhysRevA.106.023301">https://doi.org/10.1103/PhysRevA.106.023301</a>
  chicago: Bighin, Giacomo, A. Burchianti, F. Minardi, and T. Macrì. “Impurity in
    a Heteronuclear Two-Component Bose Mixture.” <i>Physical Review A</i>. American
    Physical Society, 2022. <a href="https://doi.org/10.1103/PhysRevA.106.023301">https://doi.org/10.1103/PhysRevA.106.023301</a>.
  ieee: G. Bighin, A. Burchianti, F. Minardi, and T. Macrì, “Impurity in a heteronuclear
    two-component Bose mixture,” <i>Physical Review A</i>, vol. 106, no. 2. American
    Physical Society, 2022.
  ista: Bighin G, Burchianti A, Minardi F, Macrì T. 2022. Impurity in a heteronuclear
    two-component Bose mixture. Physical Review A. 106(2), 023301.
  mla: Bighin, Giacomo, et al. “Impurity in a Heteronuclear Two-Component Bose Mixture.”
    <i>Physical Review A</i>, vol. 106, no. 2, 023301, American Physical Society,
    2022, doi:<a href="https://doi.org/10.1103/PhysRevA.106.023301">10.1103/PhysRevA.106.023301</a>.
  short: G. Bighin, A. Burchianti, F. Minardi, T. Macrì, Physical Review A 106 (2022).
date_created: 2022-08-28T22:02:00Z
date_published: 2022-08-04T00:00:00Z
date_updated: 2025-04-14T08:57:11Z
day: '04'
department:
- _id: MiLe
doi: 10.1103/PhysRevA.106.023301
external_id:
  arxiv:
  - '2109.07451'
  isi:
  - '000837953600006'
fulldoi: https://doi.org/10.1103/PhysRevA.106.023301
intvolume: '       106'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2109.07451
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: 26986C82-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02641
  name: A path-integral approach to composite impurities
publication: Physical Review A
publication_identifier:
  eissn:
  - 2469-9934
  issn:
  - 2469-9926
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Impurity in a heteronuclear two-component Bose mixture
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 106
year: '2022'
...
---
_id: '11998'
abstract:
- lang: eng
  text: Recently it became possible to study highly excited rotational states of molecules
    in superfluid helium through nonadiabatic alignment experiments (Cherepanov et
    al 2021 Phys. Rev. A 104 L061303). This calls for theoretical approaches that
    go beyond explaining renormalized values of molecular spectroscopic constants,
    which suffices when only the lowest few rotational states are involved. As the
    first step in this direction, here we present a basic quantum mechanical model
    describing highly excited rotational states of molecules in superfluid helium
    nanodroplets. We show that a linear molecule immersed in a superfluid can be seen
    as an effective symmetric top, similar to the rotational structure of radicals,
    such as OH or NO, but with the angular momentum of the superfluid playing the
    role of the electronic angular momentum in free molecules. The simple theory sheds
    light onto what happens when the rotational angular momentum of the molecule increases
    beyond the lowest excited states accessible by infrared spectroscopy. In addition,
    the model allows to estimate the effective rotational and centrifugal distortion
    constants for a broad range of species and to explain the crossover between light
    and heavy molecules in superfluid 4He in terms of the many-body wavefunction structure.
    Some of the above mentioned insights can be acquired by analyzing a simple 2 ×
    2 matrix.
acknowledgement: IC acknowledges the support by the European Union's Horizon 2020
  research and innovation programme under the Marie Skłodowska-Curie Grant Agreement
  No. 665385. GB acknowledges support from the Austrian Science Fund (FWF), under
  Project No. M2461-N27 and from the Deutsche Forschungsgemeinschaft (DFG, German
  Research Foundation) under Germany's Excellence Strategy EXC2181/1-390900948 (the
  Heidelberg STRUCTURES Excellence Cluster). ML acknowledges support by the Austrian
  Science Fund (FWF), under Project No. P29902-N27, and by the European Research Council
  (ERC) starting Grant No. 801770 (ANGULON). HS acknowledges support from the Independent
  Research Fund Denmark (Project No. 8021-00232B) and from the Villum Fonden through
  a Villum Investigator Grant No. 25886.
article_number: '075004'
article_processing_charge: Yes
article_type: original
author:
- first_name: Igor
  full_name: Cherepanov, Igor
  id: 339C7E5A-F248-11E8-B48F-1D18A9856A87
  last_name: Cherepanov
- first_name: Giacomo
  full_name: Bighin, Giacomo
  id: 4CA96FD4-F248-11E8-B48F-1D18A9856A87
  last_name: Bighin
  orcid: 0000-0001-8823-9777
- first_name: Constant A.
  full_name: Schouder, Constant A.
  last_name: Schouder
- first_name: Adam S.
  full_name: Chatterley, Adam S.
  last_name: Chatterley
- first_name: Henrik
  full_name: Stapelfeldt, Henrik
  last_name: Stapelfeldt
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
citation:
  ama: Cherepanov I, Bighin G, Schouder CA, Chatterley AS, Stapelfeldt H, Lemeshko
    M. A simple model for high rotational excitations of molecules in a superfluid.
    <i>New Journal of Physics</i>. 2022;24(7). doi:<a href="https://doi.org/10.1088/1367-2630/ac8113">10.1088/1367-2630/ac8113</a>
  apa: Cherepanov, I., Bighin, G., Schouder, C. A., Chatterley, A. S., Stapelfeldt,
    H., &#38; Lemeshko, M. (2022). A simple model for high rotational excitations
    of molecules in a superfluid. <i>New Journal of Physics</i>. IOP Publishing. <a
    href="https://doi.org/10.1088/1367-2630/ac8113">https://doi.org/10.1088/1367-2630/ac8113</a>
  chicago: Cherepanov, Igor, Giacomo Bighin, Constant A. Schouder, Adam S. Chatterley,
    Henrik Stapelfeldt, and Mikhail Lemeshko. “A Simple Model for High Rotational
    Excitations of Molecules in a Superfluid.” <i>New Journal of Physics</i>. IOP
    Publishing, 2022. <a href="https://doi.org/10.1088/1367-2630/ac8113">https://doi.org/10.1088/1367-2630/ac8113</a>.
  ieee: I. Cherepanov, G. Bighin, C. A. Schouder, A. S. Chatterley, H. Stapelfeldt,
    and M. Lemeshko, “A simple model for high rotational excitations of molecules
    in a superfluid,” <i>New Journal of Physics</i>, vol. 24, no. 7. IOP Publishing,
    2022.
  ista: Cherepanov I, Bighin G, Schouder CA, Chatterley AS, Stapelfeldt H, Lemeshko
    M. 2022. A simple model for high rotational excitations of molecules in a superfluid.
    New Journal of Physics. 24(7), 075004.
  mla: Cherepanov, Igor, et al. “A Simple Model for High Rotational Excitations of
    Molecules in a Superfluid.” <i>New Journal of Physics</i>, vol. 24, no. 7, 075004,
    IOP Publishing, 2022, doi:<a href="https://doi.org/10.1088/1367-2630/ac8113">10.1088/1367-2630/ac8113</a>.
  short: I. Cherepanov, G. Bighin, C.A. Schouder, A.S. Chatterley, H. Stapelfeldt,
    M. Lemeshko, New Journal of Physics 24 (2022).
corr_author: '1'
date_created: 2022-08-28T22:02:01Z
date_published: 2022-08-11T00:00:00Z
date_updated: 2025-05-14T11:20:18Z
day: '11'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1088/1367-2630/ac8113
ec_funded: 1
external_id:
  isi:
  - '000839216900001'
file:
- access_level: open_access
  checksum: 10116a08d3489befc13dba2cc44490f1
  content_type: application/pdf
  creator: alisjak
  date_created: 2022-08-29T09:57:40Z
  date_updated: 2022-08-29T09:57:40Z
  file_id: '12005'
  file_name: 2022_NewJournalofPhysics_Cherepanov.pdf
  file_size: 1912882
  relation: main_file
  success: 1
file_date_updated: 2022-08-29T09:57:40Z
fulldoi: https://doi.org/10.1088/1367-2630/ac8113
has_accepted_license: '1'
intvolume: '        24'
isi: 1
issue: '7'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
- _id: 26986C82-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02641
  name: A path-integral approach to composite impurities
publication: New Journal of Physics
publication_identifier:
  issn:
  - 1367-2630
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: A simple model for high rotational excitations of molecules in a superfluid
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2022'
...
