---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20143'
abstract:
- lang: eng
  text: Bacteria and archaea deploy diverse antiviral defense systems, many of which
    remain mechanistically uncharacterized. Here, we characterize Kiwa, a widespread
    two-component system composed of the transmembrane sensor KwaA and the DNA-binding
    effector KwaB. Cryogenic electron microscopy (cryo-EM) analysis reveals that KwaA
    and KwaB assemble into a large, membrane-associated supercomplex. Upon phage binding,
    KwaA senses infection at the membrane, leading to KwaB binding of ejected phage
    DNA and inhibition of replication and late transcription, without inducing host
    cell death. Although KwaB can bind DNA independently, its antiviral activity requires
    association with KwaA, suggesting spatial or conformational regulation. We show
    that the phage-encoded DNA-mimic protein Gam directly binds and inhibits KwaB
    but that co-expression with the Gam-targeted RecBCD system restores protection
    by Kiwa. Our findings support a model in which Kiwa coordinates membrane-associated
    detection of phage infection with downstream DNA binding by its effector, forming
    a spatially coordinated antiviral mechanism.
acknowledgement: We thank Rotem Sorek (Weizmann Institute of Science) for the Lambda
  Gam mutant and Ian Molineux (University of Texas) for T4Δgp2. We thank You Yu (Zhejiang
  University-University of Edinburgh Institute) and J. De La Cruz (MSK) for assistance
  with cryo-EM data collection and Lyuqin Zheng (MSK) for discussions on structural
  analysis. We thank the Imaging and Microscopy Centre (IMC) at the University of
  Southampton. This work was supported by Royal Society grant RGS\R2\222312 to F.L.N.;
  Welch Foundation grant F-1938 and National Institutes of Health R35GM138348 to D.W.T.;
  Wessex Medical Research Innovation grant AE06 to T.A.; and NIH grant GM145888 and
  Maloris Foundation and Memorial Sloan-Kettering Core grant (P30-CA008748) to D.J.P.
  In addition to MSKCC cryo-EM resources, some of this work was performed at the National
  Center for CryoEM Access and Training (NCCAT) and the Simons Electron Microscopy
  Center located at the New York Structural Biology Center, supported by the NIH Common
  Fund Transformative High Resolution Cryo-Electron Microscopy program (U24 GM129539)
  and Simons Foundation (SF349247) and NY State Assembly grants. This research used
  NSLS-II MX X-ray User Resources (FMX) of the National Synchrotron Light Source II,
  operated for the DOE Office of Science by Brookhaven National Laboratory under contract
  no. DE-SC0012704. The Center for BioMolecular Structure (CBMS) is primarily supported
  by the NIH, the National Institute of General Medical Sciences (NIGMS) through a
  Center Core P30 Grant (P30GM133893), and by the DOE Office of Biological and Environmental
  Research (KP1605010). R.K. and E.V.K. are supported by the Intramural Research Program
  of the NIH (National Library of Medicine).
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Zhiying
  full_name: Zhang, Zhiying
  last_name: Zhang
- first_name: Thomas C.
  full_name: Todeschini, Thomas C.
  last_name: Todeschini
- first_name: Yi
  full_name: Wu, Yi
  last_name: Wu
- first_name: Roman
  full_name: Kogay, Roman
  last_name: Kogay
- first_name: Ameena
  full_name: Naji, Ameena
  last_name: Naji
- first_name: Joaquin
  full_name: Cardenas Rodriguez, Joaquin
  last_name: Cardenas Rodriguez
- first_name: Rupavidhya
  full_name: Mondi, Rupavidhya
  last_name: Mondi
- first_name: Daniel
  full_name: Kaganovich, Daniel
  last_name: Kaganovich
- first_name: David W.
  full_name: Taylor, David W.
  last_name: Taylor
- first_name: Jack Peter Kelly
  full_name: Bravo, Jack Peter Kelly
  id: 96aecfa5-8931-11ee-af30-aa6a5d6eee0e
  last_name: Bravo
  orcid: 0000-0003-0456-0753
- first_name: Marianna
  full_name: Teplova, Marianna
  last_name: Teplova
- first_name: Triana
  full_name: Amen, Triana
  last_name: Amen
- first_name: Eugene
  full_name: Koonin, Eugene
  last_name: Koonin
- first_name: Dinshaw J.
  full_name: Patel, Dinshaw J.
  last_name: Patel
- first_name: Franklin L.
  full_name: Nobrega, Franklin L.
  last_name: Nobrega
citation:
  ama: Zhang Z, Todeschini TC, Wu Y, et al. Kiwa is a membrane-embedded defense supercomplex
    activated at phage attachment sites. <i>Cell</i>. 2025;188(21):5862-5877.e23.
    doi:<a href="https://doi.org/10.1016/j.cell.2025.07.002">10.1016/j.cell.2025.07.002</a>
  apa: Zhang, Z., Todeschini, T. C., Wu, Y., Kogay, R., Naji, A., Cardenas Rodriguez,
    J., … Nobrega, F. L. (2025). Kiwa is a membrane-embedded defense supercomplex
    activated at phage attachment sites. <i>Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.cell.2025.07.002">https://doi.org/10.1016/j.cell.2025.07.002</a>
  chicago: Zhang, Zhiying, Thomas C. Todeschini, Yi Wu, Roman Kogay, Ameena Naji,
    Joaquin Cardenas Rodriguez, Rupavidhya Mondi, et al. “Kiwa Is a Membrane-Embedded
    Defense Supercomplex Activated at Phage Attachment Sites.” <i>Cell</i>. Elsevier,
    2025. <a href="https://doi.org/10.1016/j.cell.2025.07.002">https://doi.org/10.1016/j.cell.2025.07.002</a>.
  ieee: Z. Zhang <i>et al.</i>, “Kiwa is a membrane-embedded defense supercomplex
    activated at phage attachment sites,” <i>Cell</i>, vol. 188, no. 21. Elsevier,
    p. 5862–5877.e23, 2025.
  ista: Zhang Z, Todeschini TC, Wu Y, Kogay R, Naji A, Cardenas Rodriguez J, Mondi
    R, Kaganovich D, Taylor DW, Bravo JPK, Teplova M, Amen T, Koonin E, Patel DJ,
    Nobrega FL. 2025. Kiwa is a membrane-embedded defense supercomplex activated at
    phage attachment sites. Cell. 188(21), 5862–5877.e23.
  mla: Zhang, Zhiying, et al. “Kiwa Is a Membrane-Embedded Defense Supercomplex Activated
    at Phage Attachment Sites.” <i>Cell</i>, vol. 188, no. 21, Elsevier, 2025, p.
    5862–5877.e23, doi:<a href="https://doi.org/10.1016/j.cell.2025.07.002">10.1016/j.cell.2025.07.002</a>.
  short: Z. Zhang, T.C. Todeschini, Y. Wu, R. Kogay, A. Naji, J. Cardenas Rodriguez,
    R. Mondi, D. Kaganovich, D.W. Taylor, J.P.K. Bravo, M. Teplova, T. Amen, E. Koonin,
    D.J. Patel, F.L. Nobrega, Cell 188 (2025) 5862–5877.e23.
date_created: 2025-08-07T05:00:04Z
date_published: 2025-10-16T00:00:00Z
date_updated: 2025-12-29T14:15:58Z
day: '16'
ddc:
- '570'
department:
- _id: JaBr
doi: 10.1016/j.cell.2025.07.002
external_id:
  isi:
  - '001603560700005'
  pmid:
  - '40730155'
file:
- access_level: open_access
  checksum: b944de5fbd7455f58e1ff338ad352239
  content_type: application/pdf
  creator: dernst
  date_created: 2025-12-29T14:15:25Z
  date_updated: 2025-12-29T14:15:25Z
  file_id: '20875'
  file_name: 2025_Cell_Zhang.pdf
  file_size: 32104588
  relation: main_file
  success: 1
file_date_updated: 2025-12-29T14:15:25Z
has_accepted_license: '1'
intvolume: '       188'
isi: 1
issue: '21'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '10'
oa: 1
oa_version: Published Version
page: 5862-5877.e23
pmid: 1
publication: Cell
publication_identifier:
  eissn:
  - 1097-4172
  issn:
  - 0092-8674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Kiwa is a membrane-embedded defense supercomplex activated at phage attachment
  sites
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 188
year: '2025'
...
---
OA_place: publisher
OA_type: gold
_id: '20146'
abstract:
- lang: eng
  text: "This criteria catalogue and the accompanying assessment questions were developed
    by a working group of KEMÖ (Kooperation E-Medien Österreich, the Austrian Academic
    Library Consortium). They are intended to support research institutions and organisations
    in the evaluation of Open Science Infrastructures. The 20 criteria outlined in
    the catalogue provide a structured basis for making informed decisions regarding
    the financial support of these infrastructures.\r\n\r\nThe assessment questions
    are intended to be completed by Open Science Infrastructures and can be shared
    with them accordingly."
article_processing_charge: No
author:
- first_name: Paul
  full_name: Gredler, Paul
  last_name: Gredler
- first_name: Christian
  full_name: Kaier, Christian
  last_name: Kaier
- first_name: Patrick
  full_name: Danowski, Patrick
  id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
  last_name: Danowski
  orcid: 0000-0002-6026-4409
- first_name: Michael
  full_name: Zoyer, Michael
  last_name: Zoyer
- first_name: Katharina
  full_name: Rieck, Katharina
  last_name: Rieck
- first_name: Andreas
  full_name: Ferus, Andreas
  last_name: Ferus
- first_name: Elisabeth
  full_name: Rosenberger, Elisabeth
  last_name: Rosenberger
- first_name: Alexander
  full_name: Löffler, Alexander
  last_name: Löffler
- first_name: Lisa
  full_name: Hofer, Lisa
  last_name: Hofer
- first_name: Laura
  full_name: Still, Laura
  last_name: Still
citation:
  ama: Gredler P, Kaier C, Danowski P, et al. <i>Catalogue of Criteria for Assessing
    the Funding Eligibility of Open Science Infrastructures</i>. Zenodo; 2025. doi:<a
    href="https://doi.org/10.5281/zenodo.15269364">10.5281/zenodo.15269364</a>
  apa: Gredler, P., Kaier, C., Danowski, P., Zoyer, M., Rieck, K., Ferus, A., … Still,
    L. (2025). <i>Catalogue of criteria for assessing the funding eligibility of Open
    Science infrastructures</i>. Zenodo. <a href="https://doi.org/10.5281/zenodo.15269364">https://doi.org/10.5281/zenodo.15269364</a>
  chicago: Gredler, Paul, Christian Kaier, Patrick Danowski, Michael Zoyer, Katharina
    Rieck, Andreas Ferus, Elisabeth Rosenberger, Alexander Löffler, Lisa Hofer, and
    Laura Still. <i>Catalogue of Criteria for Assessing the Funding Eligibility of
    Open Science Infrastructures</i>. Zenodo, 2025. <a href="https://doi.org/10.5281/zenodo.15269364">https://doi.org/10.5281/zenodo.15269364</a>.
  ieee: P. Gredler <i>et al.</i>, <i>Catalogue of criteria for assessing the funding
    eligibility of Open Science infrastructures</i>. Zenodo, 2025.
  ista: Gredler P, Kaier C, Danowski P, Zoyer M, Rieck K, Ferus A, Rosenberger E,
    Löffler A, Hofer L, Still L. 2025. Catalogue of criteria for assessing the funding
    eligibility of Open Science infrastructures, Zenodo,p.
  mla: Gredler, Paul, et al. <i>Catalogue of Criteria for Assessing the Funding Eligibility
    of Open Science Infrastructures</i>. Zenodo, 2025, doi:<a href="https://doi.org/10.5281/zenodo.15269364">10.5281/zenodo.15269364</a>.
  short: P. Gredler, C. Kaier, P. Danowski, M. Zoyer, K. Rieck, A. Ferus, E. Rosenberger,
    A. Löffler, L. Hofer, L. Still, Catalogue of Criteria for Assessing the Funding
    Eligibility of Open Science Infrastructures, Zenodo, 2025.
date_created: 2025-08-07T11:10:14Z
date_published: 2025-08-07T00:00:00Z
date_updated: 2025-08-11T07:20:03Z
day: '07'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.5281/zenodo.15269364
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.5281/zenodo.15269364
month: '08'
oa: 1
oa_version: Published Version
publication_status: published
publisher: Zenodo
status: public
title: Catalogue of criteria for assessing the funding eligibility of Open Science
  infrastructures
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: working_paper
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20154'
abstract:
- lang: eng
  text: In long-lived mammals, including humans, brain cell homeostasis is critical
    for maintaining brain function throughout life. Most neurons are generated during
    development and must maintain their cellular identity and plasticity to preserve
    brain function. Although extensive studies indicate the importance of recycling
    and regenerating cellular molecules to maintain cellular homeostasis, recent evidence
    has shown that some proteins and RNAs do not turn over for months and even years.
    We propose that these long-lived cellular molecules may be the basis for maintaining
    brain function in the long term, but also a potential convergent target of brain
    aging. We highlight key discoveries and challenges, and propose potential directions
    to unravel the mystery of brain cell longevity.
acknowledgement: The work was supported by the Deutsche Forschungsgemeinschaft (DFG,
  German Research Foundation) (470322152 – T1347/3-1; 497658532 – T1347/4-1; 507965872
  – T1347/5-1; and 460333672 – CRC1540 Exploring Brain Mechanics) to T.T., the Schram
  Foundation (T.T.), the European Research Council (ERC-2018-STG, 804468 EAGER; ERC-2023-COG,
  101125034 NEUTIME) to T.T., the Hans-Georg Geis und Xue Hong Dong-Geis Foundation
  and Forschungsstiftung Medizin am Universitätsklinikum Erlangen to T.T., and the
  Interdisciplinary Centre for Clinical Research Erlangen (Interdisziplinäres Zentrum
  für Klinische Forschung, Universitätsklinikum Erlangen; P162 to T.T.). We thank
  Dr Laura J. Harrison for editing assistance.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Martin W
  full_name: Hetzer, Martin W
  id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
  last_name: Hetzer
  orcid: 0000-0002-2111-992X
- first_name: Tomohisa
  full_name: Toda, Tomohisa
  last_name: Toda
citation:
  ama: Hetzer M, Toda T. Long-lived cellular molecules in the brain. <i>Trends in
    Neurosciences</i>. 2025;48(9):645-654. doi:<a href="https://doi.org/10.1016/j.tins.2025.07.004">10.1016/j.tins.2025.07.004</a>
  apa: Hetzer, M., &#38; Toda, T. (2025). Long-lived cellular molecules in the brain.
    <i>Trends in Neurosciences</i>. Elsevier. <a href="https://doi.org/10.1016/j.tins.2025.07.004">https://doi.org/10.1016/j.tins.2025.07.004</a>
  chicago: Hetzer, Martin, and Tomohisa Toda. “Long-Lived Cellular Molecules in the
    Brain.” <i>Trends in Neurosciences</i>. Elsevier, 2025. <a href="https://doi.org/10.1016/j.tins.2025.07.004">https://doi.org/10.1016/j.tins.2025.07.004</a>.
  ieee: M. Hetzer and T. Toda, “Long-lived cellular molecules in the brain,” <i>Trends
    in Neurosciences</i>, vol. 48, no. 9. Elsevier, pp. 645–654, 2025.
  ista: Hetzer M, Toda T. 2025. Long-lived cellular molecules in the brain. Trends
    in Neurosciences. 48(9), 645–654.
  mla: Hetzer, Martin, and Tomohisa Toda. “Long-Lived Cellular Molecules in the Brain.”
    <i>Trends in Neurosciences</i>, vol. 48, no. 9, Elsevier, 2025, pp. 645–54, doi:<a
    href="https://doi.org/10.1016/j.tins.2025.07.004">10.1016/j.tins.2025.07.004</a>.
  short: M. Hetzer, T. Toda, Trends in Neurosciences 48 (2025) 645–654.
corr_author: '1'
date_created: 2025-08-10T22:01:29Z
date_published: 2025-09-01T00:00:00Z
date_updated: 2025-12-29T13:47:58Z
day: '01'
ddc:
- '570'
department:
- _id: MaHe
doi: 10.1016/j.tins.2025.07.004
external_id:
  isi:
  - '001568965400001'
  pmid:
  - '40744775'
file:
- access_level: open_access
  checksum: 90942491b499f70b0bf48b8aec2e7387
  content_type: application/pdf
  creator: dernst
  date_created: 2025-12-29T13:47:27Z
  date_updated: 2025-12-29T13:47:27Z
  file_id: '20873'
  file_name: 2025_TrendsNeurosciences_Hetzer.pdf
  file_size: 327847
  relation: main_file
  success: 1
file_date_updated: 2025-12-29T13:47:27Z
has_accepted_license: '1'
intvolume: '        48'
isi: 1
issue: '9'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 645-654
pmid: 1
publication: Trends in Neurosciences
publication_identifier:
  eissn:
  - 1878-108X
  issn:
  - 0166-2236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Long-lived cellular molecules in the brain
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 48
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20155'
abstract:
- lang: eng
  text: We study time averages for the norm of solutions to kinetic Fokker–Planck
    equations associated with general Hamiltonians. We provide fully explicit and
    constructive decay estimates for systems subject to a confining potential, allowing
    fat-tail, subexponential and (super-)exponential local equilibria, which also
    include the classic Maxwellian case. The key step in our estimates is a modified
    Poincaré inequality, obtained via a Lions–Poincaré inequality and an averaging
    lemma.
acknowledgement: The first author was funded by the European Union's Horizon 2020
  research andinnovation program under the Marie Sklodowska-Curie grant agreements
  754362 and 101034413,and partially by Project EFI (ANR-17-CE40-0030) of the French
  National Research Agency (ANR).The work of the second author was partially funded
  by the European Research Council (ERC) underthe European Union's Horizon 2020 research
  and innovation programme (grant agreement 810367),and by the Agence Nationale de
  la Recherche under grants ANR-19-CE40-0010 (QuAMProcs) andANR-21-CE40-0006 (SINEQ).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giovanni
  full_name: Brigati, Giovanni
  id: 63ff57e8-1fbb-11ee-88f2-f558ffc59cf1
  last_name: Brigati
- first_name: Gabriel
  full_name: Stoltz, Gabriel
  last_name: Stoltz
citation:
  ama: Brigati G, Stoltz G. How to construct explicit decay rates for kinetic Fokker–Planck
    equations? <i>SIAM Journal on Mathematical Analysis</i>. 2025;57(4):3587-3622.
    doi:<a href="https://doi.org/10.1137/24M1700351">10.1137/24M1700351</a>
  apa: Brigati, G., &#38; Stoltz, G. (2025). How to construct explicit decay rates
    for kinetic Fokker–Planck equations? <i>SIAM Journal on Mathematical Analysis</i>.
    Society for Industrial and Applied Mathematics. <a href="https://doi.org/10.1137/24M1700351">https://doi.org/10.1137/24M1700351</a>
  chicago: Brigati, Giovanni, and Gabriel Stoltz. “How to Construct Explicit Decay
    Rates for Kinetic Fokker–Planck Equations?” <i>SIAM Journal on Mathematical Analysis</i>.
    Society for Industrial and Applied Mathematics, 2025. <a href="https://doi.org/10.1137/24M1700351">https://doi.org/10.1137/24M1700351</a>.
  ieee: G. Brigati and G. Stoltz, “How to construct explicit decay rates for kinetic
    Fokker–Planck equations?,” <i>SIAM Journal on Mathematical Analysis</i>, vol.
    57, no. 4. Society for Industrial and Applied Mathematics, pp. 3587–3622, 2025.
  ista: Brigati G, Stoltz G. 2025. How to construct explicit decay rates for kinetic
    Fokker–Planck equations? SIAM Journal on Mathematical Analysis. 57(4), 3587–3622.
  mla: Brigati, Giovanni, and Gabriel Stoltz. “How to Construct Explicit Decay Rates
    for Kinetic Fokker–Planck Equations?” <i>SIAM Journal on Mathematical Analysis</i>,
    vol. 57, no. 4, Society for Industrial and Applied Mathematics, 2025, pp. 3587–622,
    doi:<a href="https://doi.org/10.1137/24M1700351">10.1137/24M1700351</a>.
  short: G. Brigati, G. Stoltz, SIAM Journal on Mathematical Analysis 57 (2025) 3587–3622.
corr_author: '1'
date_created: 2025-08-10T22:01:29Z
date_published: 2025-08-01T00:00:00Z
date_updated: 2025-11-05T13:51:40Z
day: '01'
department:
- _id: JaMa
doi: 10.1137/24M1700351
ec_funded: 1
external_id:
  arxiv:
  - '2302.14506'
  isi:
  - '001550830900006'
intvolume: '        57'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2302.14506
month: '08'
oa: 1
oa_version: Preprint
page: 3587-3622
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: SIAM Journal on Mathematical Analysis
publication_identifier:
  eissn:
  - 1095-7154
  issn:
  - 0036-1410
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: How to construct explicit decay rates for kinetic Fokker–Planck equations?
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 57
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20182'
abstract:
- lang: eng
  text: Sex chromosomes have evolved many times throughout the tree of life, and understanding
    what has shaped their unusual morphological, sequence, and regulatory features
    has been a long-standing goal. Most early insights into insect sex chromosome
    biology came from a few model species, such as the fruit fly Drosophila melanogaster,
    which limited broad-scale evolutionary inferences. More recently, extensive comparative
    genomics studies have uncovered several unexpected patterns, which we highlight
    in this review. First, we describe the conservation of the ancestral X chromosome
    over 450 million years but also its recurrent turnover (i.e. its reversal to an
    autosome when a new X chromosome arose) in at least one order. We then summarize
    classical and more recent findings on how insects modulate the expression of X-linked
    genes following the degradation of the Y chromosome and how the diverse mechanisms
    of dosage compensation identified may elucidate important principles of sex chromosome
    regulatory evolution.
acknowledgement: This work was supported by an Austrian Research Fund (FWF) grant
  to B.V. (PAT 8748323) and by the Louisiana Board of Regents Research Competitiveness
  Subprogram (LEQSF(2025-28)-RD-A-20) to MAT.
article_number: '101411'
article_processing_charge: Yes (via OA deal)
article_type: review
author:
- first_name: Melissa A
  full_name: Toups, Melissa A
  id: 4E099E4E-F248-11E8-B48F-1D18A9856A87
  last_name: Toups
  orcid: 0000-0002-9752-7380
- first_name: Beatriz
  full_name: Vicoso, Beatriz
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
citation:
  ama: 'Toups MA, Vicoso B. Insect sex chromosome evolution: Conservation, turnover,
    and mechanisms of dosage compensation. <i>Current Opinion in Insect Science</i>.
    2025;72. doi:<a href="https://doi.org/10.1016/j.cois.2025.101411">10.1016/j.cois.2025.101411</a>'
  apa: 'Toups, M. A., &#38; Vicoso, B. (2025). Insect sex chromosome evolution: Conservation,
    turnover, and mechanisms of dosage compensation. <i>Current Opinion in Insect
    Science</i>. Elsevier. <a href="https://doi.org/10.1016/j.cois.2025.101411">https://doi.org/10.1016/j.cois.2025.101411</a>'
  chicago: 'Toups, Melissa A, and Beatriz Vicoso. “Insect Sex Chromosome Evolution:
    Conservation, Turnover, and Mechanisms of Dosage Compensation.” <i>Current Opinion
    in Insect Science</i>. Elsevier, 2025. <a href="https://doi.org/10.1016/j.cois.2025.101411">https://doi.org/10.1016/j.cois.2025.101411</a>.'
  ieee: 'M. A. Toups and B. Vicoso, “Insect sex chromosome evolution: Conservation,
    turnover, and mechanisms of dosage compensation,” <i>Current Opinion in Insect
    Science</i>, vol. 72. Elsevier, 2025.'
  ista: 'Toups MA, Vicoso B. 2025. Insect sex chromosome evolution: Conservation,
    turnover, and mechanisms of dosage compensation. Current Opinion in Insect Science.
    72, 101411.'
  mla: 'Toups, Melissa A., and Beatriz Vicoso. “Insect Sex Chromosome Evolution: Conservation,
    Turnover, and Mechanisms of Dosage Compensation.” <i>Current Opinion in Insect
    Science</i>, vol. 72, 101411, Elsevier, 2025, doi:<a href="https://doi.org/10.1016/j.cois.2025.101411">10.1016/j.cois.2025.101411</a>.'
  short: M.A. Toups, B. Vicoso, Current Opinion in Insect Science 72 (2025).
corr_author: '1'
date_created: 2025-08-17T22:01:35Z
date_published: 2025-12-01T00:00:00Z
date_updated: 2025-12-30T13:14:38Z
day: '01'
ddc:
- '570'
department:
- _id: BeVi
doi: 10.1016/j.cois.2025.101411
external_id:
  isi:
  - '001582424100001'
file:
- access_level: open_access
  checksum: 262640abc34277686b56eb60102976f6
  content_type: application/pdf
  creator: dernst
  date_created: 2025-12-30T13:14:20Z
  date_updated: 2025-12-30T13:14:20Z
  file_id: '20917'
  file_name: 2025_CurrOpinionInsectScience_Toups.pdf
  file_size: 897079
  relation: main_file
  success: 1
file_date_updated: 2025-12-30T13:14:20Z
has_accepted_license: '1'
intvolume: '        72'
isi: 1
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 8ed82125-16d5-11f0-9cad-fbcae312235b
  grant_number: PAT 8748323
  name: Sex chromosomes in evolution and development
publication: Current Opinion in Insect Science
publication_identifier:
  eissn:
  - 2214-5753
  issn:
  - 2214-5745
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Insect sex chromosome evolution: Conservation, turnover, and mechanisms of
  dosage compensation'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 72
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20183'
abstract:
- lang: eng
  text: The unequal segregation of organelles has been proposed to be an intrinsic
    mechanism that contributes to cell fate divergence during asymmetric cell division;
    however, in vivo evidence is sparse. Using super-resolution microscopy, we analysed
    the segregation of organelles during the division of the neuroblast QL.p in C.
    elegans larvae. QL.p divides to generate a daughter that survives, QL.pa, and
    a daughter that dies, QL.pp. We found that mitochondria segregate unequally by
    density and morphology and that this is dependent on mitochondrial dynamics. Furthermore,
    we found that mitochondrial density in QL.pp correlates with the time it takes
    QL.pp to die. We propose that low mitochondrial density in QL.pp promotes the
    cell death fate and ensures that QL.pp dies in a highly reproducible and timely
    manner. Our results provide in vivo evidence that the unequal segregation of mitochondria
    can contribute to cell fate divergence during asymmetric cell division in a developing
    animal.
acknowledgement: We thank members of the Conradt lab, the Center for Cell and Molecular
  Dynamics (https://www.uclccmd.co.uk/) and T. Schedl for discussions and comments
  on the manuscript. We thank L. McGuinness for excellent technical support. Some
  strains were provided by the Caenorhabditis Genetics Center (CGC), which is funded
  by NIH Office of Research Infrastructure Programs (P40 OD010440). We thank Alex
  Hajnal (University of Zurich, Switzerland) and Andrew deMello (ETH Zurich, Switzerland)
  for their support of S.B. This work was supported by a predoctoral fellowship from
  the Studienstiftung des deutschen Volkes to NM, funds from UCL (Division of Biosciences,
  UCL LSM Capital Equipment Fund) to B.C., and a Wolfson Fellowship from the Royal
  Society (https://royalsociety.org/) to B.C. (RSWF\R1\180008), and the Biotechnology
  and Biological Sciences Research Council (https://bbsrc.ukri.org/) (BB/V007572/1
  and BB/V015648/1to B.C.).
article_number: '7174'
article_processing_charge: Yes
article_type: original
author:
- first_name: Ioannis
  full_name: Segos, Ioannis
  last_name: Segos
- first_name: Jens
  full_name: Van Eeckhoven, Jens
  last_name: Van Eeckhoven
- first_name: Simon
  full_name: Berger, Simon
  last_name: Berger
- first_name: Nikhil
  full_name: Mishra, Nikhil
  id: C4D70E82-1081-11EA-B3ED-9A4C3DDC885E
  last_name: Mishra
  orcid: 0000-0002-6425-5788
- first_name: Eric J.
  full_name: Lambie, Eric J.
  last_name: Lambie
- first_name: Barbara
  full_name: Conradt, Barbara
  last_name: Conradt
citation:
  ama: Segos I, Van Eeckhoven J, Berger S, Mishra N, Lambie EJ, Conradt B. Unequal
    segregation of mitochondria during asymmetric cell division contributes to cell
    fate divergence in sister cells in vivo. <i>Nature Communications</i>. 2025;16.
    doi:<a href="https://doi.org/10.1038/s41467-025-62484-5">10.1038/s41467-025-62484-5</a>
  apa: Segos, I., Van Eeckhoven, J., Berger, S., Mishra, N., Lambie, E. J., &#38;
    Conradt, B. (2025). Unequal segregation of mitochondria during asymmetric cell
    division contributes to cell fate divergence in sister cells in vivo. <i>Nature
    Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-025-62484-5">https://doi.org/10.1038/s41467-025-62484-5</a>
  chicago: Segos, Ioannis, Jens Van Eeckhoven, Simon Berger, Nikhil Mishra, Eric J.
    Lambie, and Barbara Conradt. “Unequal Segregation of Mitochondria during Asymmetric
    Cell Division Contributes to Cell Fate Divergence in Sister Cells in Vivo.” <i>Nature
    Communications</i>. Springer Nature, 2025. <a href="https://doi.org/10.1038/s41467-025-62484-5">https://doi.org/10.1038/s41467-025-62484-5</a>.
  ieee: I. Segos, J. Van Eeckhoven, S. Berger, N. Mishra, E. J. Lambie, and B. Conradt,
    “Unequal segregation of mitochondria during asymmetric cell division contributes
    to cell fate divergence in sister cells in vivo,” <i>Nature Communications</i>,
    vol. 16. Springer Nature, 2025.
  ista: Segos I, Van Eeckhoven J, Berger S, Mishra N, Lambie EJ, Conradt B. 2025.
    Unequal segregation of mitochondria during asymmetric cell division contributes
    to cell fate divergence in sister cells in vivo. Nature Communications. 16, 7174.
  mla: Segos, Ioannis, et al. “Unequal Segregation of Mitochondria during Asymmetric
    Cell Division Contributes to Cell Fate Divergence in Sister Cells in Vivo.” <i>Nature
    Communications</i>, vol. 16, 7174, Springer Nature, 2025, doi:<a href="https://doi.org/10.1038/s41467-025-62484-5">10.1038/s41467-025-62484-5</a>.
  short: I. Segos, J. Van Eeckhoven, S. Berger, N. Mishra, E.J. Lambie, B. Conradt,
    Nature Communications 16 (2025).
date_created: 2025-08-17T22:01:35Z
date_published: 2025-08-04T00:00:00Z
date_updated: 2025-09-01T09:47:29Z
day: '04'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.1038/s41467-025-62484-5
external_id:
  pmid:
  - '40759648'
file:
- access_level: open_access
  checksum: f28e73963ea1f55876d0d1afca0f706a
  content_type: application/pdf
  creator: dernst
  date_created: 2025-09-01T09:46:44Z
  date_updated: 2025-09-01T09:46:44Z
  file_id: '20261'
  file_name: 2025_NatureComm_Segos.pdf
  file_size: 3775190
  relation: main_file
  success: 1
file_date_updated: 2025-09-01T09:46:44Z
has_accepted_license: '1'
intvolume: '        16'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Unequal segregation of mitochondria during asymmetric cell division contributes
  to cell fate divergence in sister cells in vivo
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20184'
abstract:
- lang: eng
  text: Specialized DNA polymerases facilitate various cellular processes. Despite
    extensive research, the mutagenic effects of these error-prone enzymes on genomes
    are not fully understood. Here we show that Pol IV promotes genomic instability
    in Pseudomonas aeruginosa by misincorporating oxidized guanine nucleotides. This
    activity led to a distinctive mutational signature, characterized by A-to-C transversions
    occurring preferentially at AT sites flanked by a 5’G and/or 3’C. Furthermore,
    Pol IV preferentially targeted pathogenicity genes located at specific chromosomal
    locations near the replication termination region and rRNA-encoding operons. Half
    of the mutation events catalyzed by Pol IV impaired gene function. This can be
    attributed to the bias of Pol IV for mutating codons with its preferred sequence
    contexts, leading to substitutions to unreactive alanine and glycine residues.
    Remarkably, mutation signatures identified for Pol IV were found in clinical isolate
    genomes of P. aeruginosa, providing compelling evidence for its role in genetic
    diversification during pathogen adaptation.
acknowledgement: "This work was supported by the Secretaría de Ciencia y Técnica (33620230100926CB),
  Universidad Nacional de Córdoba; and the Agencia Nacional de Promoción Científica
  y Técnica (PICT 2018-4527).\r\n\r\n"
article_number: '1148'
article_processing_charge: Yes
article_type: original
author:
- first_name: Sofía D.
  full_name: Castell, Sofía D.
  last_name: Castell
- first_name: Consuelo M.
  full_name: Fernandez, Consuelo M.
  last_name: Fernandez
- first_name: Ignacio N.
  full_name: Tumas, Ignacio N.
  last_name: Tumas
- first_name: Lucía M.
  full_name: Margara, Lucía M.
  last_name: Margara
- first_name: Maria C
  full_name: Miserendino, Maria C
  id: 273e0cbd-72f0-11ef-b75a-f9f932e292fa
  last_name: Miserendino
- first_name: Danilo G.
  full_name: Ceschin, Danilo G.
  last_name: Ceschin
- first_name: Roberto J.
  full_name: Pezza, Roberto J.
  last_name: Pezza
- first_name: Mariela R.
  full_name: Monti, Mariela R.
  last_name: Monti
citation:
  ama: Castell SD, Fernandez CM, Tumas IN, et al. The low-fidelity DNA Pol IV accelerates
    evolution of pathogenicity genes in Pseudomonas aeruginosa. <i>Communications
    Biology</i>. 2025;8. doi:<a href="https://doi.org/10.1038/s42003-025-08589-5">10.1038/s42003-025-08589-5</a>
  apa: Castell, S. D., Fernandez, C. M., Tumas, I. N., Margara, L. M., Miserendino,
    M. C., Ceschin, D. G., … Monti, M. R. (2025). The low-fidelity DNA Pol IV accelerates
    evolution of pathogenicity genes in Pseudomonas aeruginosa. <i>Communications
    Biology</i>. Springer Nature. <a href="https://doi.org/10.1038/s42003-025-08589-5">https://doi.org/10.1038/s42003-025-08589-5</a>
  chicago: Castell, Sofía D., Consuelo M. Fernandez, Ignacio N. Tumas, Lucía M. Margara,
    Maria C Miserendino, Danilo G. Ceschin, Roberto J. Pezza, and Mariela R. Monti.
    “The Low-Fidelity DNA Pol IV Accelerates Evolution of Pathogenicity Genes in Pseudomonas
    Aeruginosa.” <i>Communications Biology</i>. Springer Nature, 2025. <a href="https://doi.org/10.1038/s42003-025-08589-5">https://doi.org/10.1038/s42003-025-08589-5</a>.
  ieee: S. D. Castell <i>et al.</i>, “The low-fidelity DNA Pol IV accelerates evolution
    of pathogenicity genes in Pseudomonas aeruginosa,” <i>Communications Biology</i>,
    vol. 8. Springer Nature, 2025.
  ista: Castell SD, Fernandez CM, Tumas IN, Margara LM, Miserendino MC, Ceschin DG,
    Pezza RJ, Monti MR. 2025. The low-fidelity DNA Pol IV accelerates evolution of
    pathogenicity genes in Pseudomonas aeruginosa. Communications Biology. 8, 1148.
  mla: Castell, Sofía D., et al. “The Low-Fidelity DNA Pol IV Accelerates Evolution
    of Pathogenicity Genes in Pseudomonas Aeruginosa.” <i>Communications Biology</i>,
    vol. 8, 1148, Springer Nature, 2025, doi:<a href="https://doi.org/10.1038/s42003-025-08589-5">10.1038/s42003-025-08589-5</a>.
  short: S.D. Castell, C.M. Fernandez, I.N. Tumas, L.M. Margara, M.C. Miserendino,
    D.G. Ceschin, R.J. Pezza, M.R. Monti, Communications Biology 8 (2025).
date_created: 2025-08-17T22:01:35Z
date_published: 2025-08-02T00:00:00Z
date_updated: 2025-09-30T14:18:46Z
day: '02'
ddc:
- '570'
department:
- _id: PaSc
- _id: GradSch
doi: 10.1038/s42003-025-08589-5
external_id:
  isi:
  - '001541878500001'
  pmid:
  - '40753298'
has_accepted_license: '1'
intvolume: '         8'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s42003-025-08589-5
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Communications Biology
publication_identifier:
  eissn:
  - 2399-3642
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The low-fidelity DNA Pol IV accelerates evolution of pathogenicity genes in
  Pseudomonas aeruginosa
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 8
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20185'
abstract:
- lang: eng
  text: We show a local rigidity result for the integrability of symplectic billiards.
    We prove that any domain which is close to an ellipse, and for which the symplectic
    billiard map is rationally integrable must be an ellipse as well. This is in spirit
    of the result of [2] for Birkhoff billiards.
acknowledgement: The author would like to thank Corentin Fierobe, Vadim Kaloshin,
  Illya Koval and Yunzhe Li for useful discussions. The author would also like to
  thank the referee for useful remarks. Open access funding provided by Institute
  of Science and Technology (IST Austria). European Research Council (885707) Mr Daniel
  Tsodikovich
article_number: '306'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Daniel
  full_name: Tsodikovich, Daniel
  id: 04531810-fb3e-11ef-87f0-800a4ce333db
  last_name: Tsodikovich
citation:
  ama: Tsodikovich D. Local rigidity for symplectic billiards. <i>Journal of Geometric
    Analysis</i>. 2025;35(10). doi:<a href="https://doi.org/10.1007/s12220-025-02148-4">10.1007/s12220-025-02148-4</a>
  apa: Tsodikovich, D. (2025). Local rigidity for symplectic billiards. <i>Journal
    of Geometric Analysis</i>. Springer Nature. <a href="https://doi.org/10.1007/s12220-025-02148-4">https://doi.org/10.1007/s12220-025-02148-4</a>
  chicago: Tsodikovich, Daniel. “Local Rigidity for Symplectic Billiards.” <i>Journal
    of Geometric Analysis</i>. Springer Nature, 2025. <a href="https://doi.org/10.1007/s12220-025-02148-4">https://doi.org/10.1007/s12220-025-02148-4</a>.
  ieee: D. Tsodikovich, “Local rigidity for symplectic billiards,” <i>Journal of Geometric
    Analysis</i>, vol. 35, no. 10. Springer Nature, 2025.
  ista: Tsodikovich D. 2025. Local rigidity for symplectic billiards. Journal of Geometric
    Analysis. 35(10), 306.
  mla: Tsodikovich, Daniel. “Local Rigidity for Symplectic Billiards.” <i>Journal
    of Geometric Analysis</i>, vol. 35, no. 10, 306, Springer Nature, 2025, doi:<a
    href="https://doi.org/10.1007/s12220-025-02148-4">10.1007/s12220-025-02148-4</a>.
  short: D. Tsodikovich, Journal of Geometric Analysis 35 (2025).
corr_author: '1'
date_created: 2025-08-17T22:01:35Z
date_published: 2025-08-07T00:00:00Z
date_updated: 2025-12-30T09:29:27Z
day: '07'
ddc:
- '510'
department:
- _id: VaKa
doi: 10.1007/s12220-025-02148-4
ec_funded: 1
external_id:
  arxiv:
  - '2501.08849'
  isi:
  - '001546433200002'
file:
- access_level: open_access
  checksum: ed86500742b3fd93db3287558a630383
  content_type: application/pdf
  creator: dernst
  date_created: 2025-12-30T09:28:58Z
  date_updated: 2025-12-30T09:28:58Z
  file_id: '20907'
  file_name: 2025_JourGeomAnalysis_Tsodikovich.pdf
  file_size: 484344
  relation: main_file
  success: 1
file_date_updated: 2025-12-30T09:28:58Z
has_accepted_license: '1'
intvolume: '        35'
isi: 1
issue: '10'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 9B8B92DE-BA93-11EA-9121-9846C619BF3A
  call_identifier: H2020
  grant_number: '885707'
  name: Spectral rigidity and integrability for billiards and geodesic flows
publication: Journal of Geometric Analysis
publication_identifier:
  issn:
  - 1050-6926
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Local rigidity for symplectic billiards
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20186'
abstract:
- lang: eng
  text: Enforcement of information-flow policies has been extensively studied by language-based
    approaches over the past few decades. In this paper, we propose an alternative,
    novel, general, and effective approach using enforcement of hyperproperties– a
    powerful formalism for expressing and reasoning about a wide range of information-flow
    security policies. We study black- vs. gray- vs. white-box enforcement of hyperproperties
    expressed by nondeterministic finite-word hyperautomata (NFH), where the enforcer
    has null, some, or complete information about the implementation of the system
    under scrutiny. Given an NFH, in order to generate a runtime enforcer, we reduce
    the problem to controller synthesis for hyperproperties and subsequently to the
    satisfiability problem for quantified Boolean formulas (QBFs). The resulting enforcers
    are transferable with low-overhead. We conduct a rich set of case studies, including
    information-flow control for JavaScript code, as well as synthesizing obfuscators
    for control plants.
acknowledgement: This project was funded in part by the Austrian Science Fund (FWF)
  SFB project SpyCoDe F8502, Vienna Science and Technology Fund (WWTF) [10.47379/ICT19018]
  (ProbInG) and WWTF project ICT22-023 (TAIGER), National Science Foundation (NSF)
  CPS Award 1837680, NSF award ECCS-2144416 and NSF SaTC Award 2245114. Open access
  funding provided by Institute of Science and Technology (IST Austria).
article_number: '30'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Tzu Han
  full_name: Hsu, Tzu Han
  last_name: Hsu
- first_name: Ana A
  full_name: Oliveira Da Costa, Ana A
  id: 8b282559-50b0-11ef-861e-d6ace0d92e9b
  last_name: Oliveira Da Costa
- first_name: Andrew
  full_name: Wintenberg, Andrew
  last_name: Wintenberg
- first_name: Ezio
  full_name: Bartocci, Ezio
  last_name: Bartocci
- first_name: Borzoo
  full_name: Bonakdarpour, Borzoo
  last_name: Bonakdarpour
citation:
  ama: Hsu TH, Oliveira da Costa AA, Wintenberg A, Bartocci E, Bonakdarpour B. Gray-box
    runtime enforcement of hyperproperties. <i>Acta Informatica</i>. 2025;62(3). doi:<a
    href="https://doi.org/10.1007/s00236-025-00502-1">10.1007/s00236-025-00502-1</a>
  apa: Hsu, T. H., Oliveira da Costa, A. A., Wintenberg, A., Bartocci, E., &#38; Bonakdarpour,
    B. (2025). Gray-box runtime enforcement of hyperproperties. <i>Acta Informatica</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s00236-025-00502-1">https://doi.org/10.1007/s00236-025-00502-1</a>
  chicago: Hsu, Tzu Han, Ana A Oliveira da Costa, Andrew Wintenberg, Ezio Bartocci,
    and Borzoo Bonakdarpour. “Gray-Box Runtime Enforcement of Hyperproperties.” <i>Acta
    Informatica</i>. Springer Nature, 2025. <a href="https://doi.org/10.1007/s00236-025-00502-1">https://doi.org/10.1007/s00236-025-00502-1</a>.
  ieee: T. H. Hsu, A. A. Oliveira da Costa, A. Wintenberg, E. Bartocci, and B. Bonakdarpour,
    “Gray-box runtime enforcement of hyperproperties,” <i>Acta Informatica</i>, vol.
    62, no. 3. Springer Nature, 2025.
  ista: Hsu TH, Oliveira da Costa AA, Wintenberg A, Bartocci E, Bonakdarpour B. 2025.
    Gray-box runtime enforcement of hyperproperties. Acta Informatica. 62(3), 30.
  mla: Hsu, Tzu Han, et al. “Gray-Box Runtime Enforcement of Hyperproperties.” <i>Acta
    Informatica</i>, vol. 62, no. 3, 30, Springer Nature, 2025, doi:<a href="https://doi.org/10.1007/s00236-025-00502-1">10.1007/s00236-025-00502-1</a>.
  short: T.H. Hsu, A.A. Oliveira da Costa, A. Wintenberg, E. Bartocci, B. Bonakdarpour,
    Acta Informatica 62 (2025).
corr_author: '1'
date_created: 2025-08-17T22:01:36Z
date_published: 2025-09-01T00:00:00Z
date_updated: 2025-09-30T14:20:11Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/s00236-025-00502-1
external_id:
  isi:
  - '001546115300001'
file:
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  checksum: 90a43350fd4a8c5cb5b1b0e1aea7970d
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  date_created: 2025-09-02T05:53:47Z
  date_updated: 2025-09-02T05:53:47Z
  file_id: '20267'
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  relation: main_file
  success: 1
file_date_updated: 2025-09-02T05:53:47Z
has_accepted_license: '1'
intvolume: '        62'
isi: 1
issue: '3'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 34a1b658-11ca-11ed-8bc3-c75229f0241e
  grant_number: F8502
  name: Interface Theory for Security and Privacy
publication: Acta Informatica
publication_identifier:
  eissn:
  - 1432-0525
  issn:
  - 0001-5903
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Gray-box runtime enforcement of hyperproperties
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 62
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20188'
abstract:
- lang: eng
  text: Collective cell migration is coordinated by the front-to-rear intercellular
    propagation of EGFR-Ras-ERK pathway activation. However, the molecular mechanisms
    integrating front-to-rear information into this intercellular signaling cascade,
    particularly the determinants of cellular front-side specification, remain elusive.
    We visualized the activity of EGFR, Ras, Rac1 and Rab5A (hereafter Rab5) by using
    FRET biosensors and chemogenetic tools. Whereas EGFR activation was uniformly
    observed within cells, Ras activation was biased to the front side within cells.
    The polarized Ras activation depended on Merlin and Rac1, which also showed front-biased
    activation. Furthermore, Rab5, a crucial regulator of cell migration, demonstrated
    similar front-biased activation and was found to function downstream of Ras while
    being necessary for Rac1 activation. Thus, the positive feedback loop consisting
    of Ras, Rab5 and Rac1 is activated primarily at the front of collectively migrating
    cells. These findings offer new spatio-temporal insight into processing front–rear
    information during collective cell migration.
acknowledgement: We are grateful to the members of the Matsuda Laboratory for their
  helpful input, to K. Hirano, T. Uesugi and K. Takakura, who provided technical assistance,
  and to the Medical Research Support Center of Kyoto University for DNA sequence
  analysis. This work was supported by the Kyoto University Live Imaging Center. Financial
  support was provided by Japan Society for the Promotion of Science (JSPS) KAKENHI
  grants (21H05226 to K.T., 19H00993 and 20H05898 to M.M.), a Japan Science and Technology
  Agency (JST) CREST grant (JPMJCR1654 to M.M.), and a JST Moonshot Research and Development
  Program grant (JPMJPS2022 to M.M.). Open Access funding provided by Tokushima University.
  Deposited in PMC for immediate release.
article_number: '263779'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Yuya
  full_name: Jikko, Yuya
  last_name: Jikko
- first_name: Eriko
  full_name: Deguchi, Eriko
  last_name: Deguchi
- first_name: Kimiya
  full_name: Matsuda, Kimiya
  last_name: Matsuda
- first_name: Naoya
  full_name: Hino, Naoya
  id: 5299a9ce-7679-11eb-a7bc-d1e62b936307
  last_name: Hino
- first_name: Shinya
  full_name: Tsukiji, Shinya
  last_name: Tsukiji
- first_name: Michiyuki
  full_name: Matsuda, Michiyuki
  last_name: Matsuda
- first_name: Kenta
  full_name: Terai, Kenta
  last_name: Terai
citation:
  ama: Jikko Y, Deguchi E, Matsuda K, et al. Front-biased activation of the Ras-Rab5-Rac1
    loop coordinates collective cell migration. <i>Journal of Cell Science</i>. 2025;138(15).
    doi:<a href="https://doi.org/10.1242/jcs.263779">10.1242/jcs.263779</a>
  apa: Jikko, Y., Deguchi, E., Matsuda, K., Hino, N., Tsukiji, S., Matsuda, M., &#38;
    Terai, K. (2025). Front-biased activation of the Ras-Rab5-Rac1 loop coordinates
    collective cell migration. <i>Journal of Cell Science</i>. The Company of Biologists.
    <a href="https://doi.org/10.1242/jcs.263779">https://doi.org/10.1242/jcs.263779</a>
  chicago: Jikko, Yuya, Eriko Deguchi, Kimiya Matsuda, Naoya Hino, Shinya Tsukiji,
    Michiyuki Matsuda, and Kenta Terai. “Front-Biased Activation of the Ras-Rab5-Rac1
    Loop Coordinates Collective Cell Migration.” <i>Journal of Cell Science</i>. The
    Company of Biologists, 2025. <a href="https://doi.org/10.1242/jcs.263779">https://doi.org/10.1242/jcs.263779</a>.
  ieee: Y. Jikko <i>et al.</i>, “Front-biased activation of the Ras-Rab5-Rac1 loop
    coordinates collective cell migration,” <i>Journal of Cell Science</i>, vol. 138,
    no. 15. The Company of Biologists, 2025.
  ista: Jikko Y, Deguchi E, Matsuda K, Hino N, Tsukiji S, Matsuda M, Terai K. 2025.
    Front-biased activation of the Ras-Rab5-Rac1 loop coordinates collective cell
    migration. Journal of Cell Science. 138(15), 263779.
  mla: Jikko, Yuya, et al. “Front-Biased Activation of the Ras-Rab5-Rac1 Loop Coordinates
    Collective Cell Migration.” <i>Journal of Cell Science</i>, vol. 138, no. 15,
    263779, The Company of Biologists, 2025, doi:<a href="https://doi.org/10.1242/jcs.263779">10.1242/jcs.263779</a>.
  short: Y. Jikko, E. Deguchi, K. Matsuda, N. Hino, S. Tsukiji, M. Matsuda, K. Terai,
    Journal of Cell Science 138 (2025).
date_created: 2025-08-17T22:01:36Z
date_published: 2025-08-01T00:00:00Z
date_updated: 2025-11-27T14:12:24Z
day: '01'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.1242/jcs.263779
external_id:
  isi:
  - '001567723900009'
  pmid:
  - '40667649'
file:
- access_level: open_access
  checksum: 29f42619dab5ce251a20c769ed4581c0
  content_type: application/pdf
  creator: dernst
  date_created: 2025-09-01T10:02:24Z
  date_updated: 2025-09-01T10:02:24Z
  file_id: '20262'
  file_name: 2025_JourCellScience_Jikko.pdf
  file_size: 12393297
  relation: main_file
  success: 1
file_date_updated: 2025-09-01T10:02:24Z
has_accepted_license: '1'
intvolume: '       138'
isi: 1
issue: '15'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Science
publication_identifier:
  eissn:
  - 1477-9137
  issn:
  - ' 0021-9533'
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Front-biased activation of the Ras-Rab5-Rac1 loop coordinates collective cell
  migration
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 138
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20189'
abstract:
- lang: eng
  text: Certification was made mandatory for the first time in the latest hardware
    model checking competition. In this case study, we investigate the trade-offs
    of requiring certificates for both passing and failing properties in the competition.
    Our evaluation shows that participating model checkers were able to produce compact,
    correct certificates that could be verified with minimal overhead. Furthermore,
    the certifying winner of the competition outperforms the previous non-certifying
    state-of-the-art model checker, demonstrating that certification can be adopted
    without compromising model checking efficiency.
acknowledgement: "This work is supported in part by the ERC-2020-AdG 101020093, the
  LIT AI Lab funded by the State of Upper Austria, the Research Council of Finland
  under the project 336092, and a gift from Intel Corporation.\r\nFurthermore we of
  course also owe a big thank-you to the submitters of model checkers and benchmarks
  to the competition over all these years. Without their enthusiasm and support neither
  the competition nor this study would exist."
alternative_title:
- LNCS
article_processing_charge: Yes (in subscription journal)
author:
- first_name: Nils
  full_name: Froleyks, Nils
  last_name: Froleyks
- first_name: Zhengqi
  full_name: Yu, Zhengqi
  id: 20aa2ae8-f2f1-11ed-bbfa-8205053f1342
  last_name: Yu
  orcid: 0000-0002-4993-773X
- first_name: Mathias
  full_name: Preiner, Mathias
  last_name: Preiner
- first_name: Armin
  full_name: Biere, Armin
  last_name: Biere
- first_name: Keijo
  full_name: Heljanko, Keijo
  last_name: Heljanko
citation:
  ama: 'Froleyks N, Yu E, Preiner M, Biere A, Heljanko K. Introducing certificates
    to the hardware model checking competition. In: <i>37th International Conference
    on Computer Aided Verification</i>. Vol 15931. Springer Nature; 2025:281-295.
    doi:<a href="https://doi.org/10.1007/978-3-031-98668-0_14">10.1007/978-3-031-98668-0_14</a>'
  apa: 'Froleyks, N., Yu, E., Preiner, M., Biere, A., &#38; Heljanko, K. (2025). Introducing
    certificates to the hardware model checking competition. In <i>37th International
    Conference on Computer Aided Verification</i> (Vol. 15931, pp. 281–295). Zagreb,
    Croatia: Springer Nature. <a href="https://doi.org/10.1007/978-3-031-98668-0_14">https://doi.org/10.1007/978-3-031-98668-0_14</a>'
  chicago: Froleyks, Nils, Emily Yu, Mathias Preiner, Armin Biere, and Keijo Heljanko.
    “Introducing Certificates to the Hardware Model Checking Competition.” In <i>37th
    International Conference on Computer Aided Verification</i>, 15931:281–95. Springer
    Nature, 2025. <a href="https://doi.org/10.1007/978-3-031-98668-0_14">https://doi.org/10.1007/978-3-031-98668-0_14</a>.
  ieee: N. Froleyks, E. Yu, M. Preiner, A. Biere, and K. Heljanko, “Introducing certificates
    to the hardware model checking competition,” in <i>37th International Conference
    on Computer Aided Verification</i>, Zagreb, Croatia, 2025, vol. 15931, pp. 281–295.
  ista: 'Froleyks N, Yu E, Preiner M, Biere A, Heljanko K. 2025. Introducing certificates
    to the hardware model checking competition. 37th International Conference on Computer
    Aided Verification. CAV: Computer Aided Verification, LNCS, vol. 15931, 281–295.'
  mla: Froleyks, Nils, et al. “Introducing Certificates to the Hardware Model Checking
    Competition.” <i>37th International Conference on Computer Aided Verification</i>,
    vol. 15931, Springer Nature, 2025, pp. 281–95, doi:<a href="https://doi.org/10.1007/978-3-031-98668-0_14">10.1007/978-3-031-98668-0_14</a>.
  short: N. Froleyks, E. Yu, M. Preiner, A. Biere, K. Heljanko, in:, 37th International
    Conference on Computer Aided Verification, Springer Nature, 2025, pp. 281–295.
conference:
  end_date: 2025-07-25
  location: Zagreb, Croatia
  name: 'CAV: Computer Aided Verification'
  start_date: 2025-07-23
date_created: 2025-08-17T22:01:36Z
date_published: 2025-01-01T00:00:00Z
date_updated: 2025-12-01T12:34:05Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-031-98668-0_14
ec_funded: 1
external_id:
  isi:
  - '001562507100014'
file:
- access_level: open_access
  checksum: 15ec1bc9b9409d3b2736f4c9d5f42fd1
  content_type: application/pdf
  creator: dernst
  date_created: 2025-09-02T05:46:10Z
  date_updated: 2025-09-02T05:46:10Z
  file_id: '20266'
  file_name: 2025_CAV_Froleyks.pdf
  file_size: 1078274
  relation: main_file
  success: 1
file_date_updated: 2025-09-02T05:46:10Z
has_accepted_license: '1'
intvolume: '     15931'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 281-295
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 37th International Conference on Computer Aided Verification
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783031986673'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Introducing certificates to the hardware model checking competition
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15931
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20191'
abstract:
- lang: eng
  text: High-entropy alloys (HEAs) show great potential for catalyzing complex multi-step
    reactions, but optimizing their parameters, i.e., composition, but also their
    crystallinity and morphology, remains a significant challenge. In this study,
    FeCoNiMoW HEAs are synthesized into either amorphous nanosheets (HEANS) or crystalline
    nanoparticles (HEANP), which are then used to catalyze the lithium–sulfur (Li–S)
    reaction of Li–S batteries (LSBs). Evaluations in symmetric cells, coin cells,
    and pouch cells reveal that HEANS significantly enhance LSB performance, achieving
    initial discharge capacities up to 1632 mAh g−1. The batteries also exhibit excellent
    cycling stability over 1000 cycles at 3Cand maintain high-rate performance up
    to 10C with a capacity of 614 mAh g−1. Comprehensive in situ analyses and density
    functional theory calculations demonstrate that amorphous HEANS provide more active
    sites, better ionic conductivity and stronger chemical interactions with lithium
    polysulfides (LiPS). These properties effectively suppress the shuttle effect,
    promote the complete S8 → Li2S conversion by reducing the impedance of the solid-electrolyte
    interphase, and accelerate the Li2S4 → Li2S2 step by lowering the nucleation energy
    barrier. Overall, this study highlights the superior catalytic properties of amorphous
    2D HEAs in LSBs and offers new insights into the mechanisms of LiPS conversion.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: The authors acknowledge support from the 2BoSS project of the ERA-MIN3
  program with the Spanish grant number PCI2022-132985/AEI/10.13039/50110001103, and
  funding from Generalitat de Catalunya 2021SGR01581 and European Union NextGenerationEU/PRTR.
  L.Yang, C.Huang, X.Lu, A.Yu, C.Li, J.Yu, and X.Bi thank the China Scholarship Council
  (CSC) for the scholarship support. This research was supported by the Scientific
  Service Units (SSU) of ISTA through resources provided by the Electron Microscopy
  Facility (EMF), and by the Werner Siemens Foundation (WSS) for financial support.
article_number: e13859
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Ren
  full_name: He, Ren
  last_name: He
- first_name: Seungho
  full_name: Lee, Seungho
  id: BB243B88-D767-11E9-B658-BC13E6697425
  last_name: Lee
  orcid: 0000-0002-6962-8598
- first_name: Yang
  full_name: Ding, Yang
  last_name: Ding
- first_name: Chen
  full_name: Huang, Chen
  last_name: Huang
- first_name: Xuan
  full_name: Lu, Xuan
  last_name: Lu
- first_name: Lirong
  full_name: Zheng, Lirong
  last_name: Zheng
- first_name: Ao
  full_name: Yu, Ao
  last_name: Yu
- first_name: Chaoyue
  full_name: Zhang, Chaoyue
  last_name: Zhang
- first_name: Canhuang
  full_name: Li, Canhuang
  last_name: Li
- first_name: Xiaoyu
  full_name: Bi, Xiaoyu
  last_name: Bi
- first_name: Yaqiang
  full_name: Li, Yaqiang
  last_name: Li
- first_name: Yaqi
  full_name: Liao, Yaqi
  last_name: Liao
- first_name: Junshan
  full_name: Li, Junshan
  last_name: Li
- first_name: Ahmad
  full_name: Ostovari Moghaddam, Ahmad
  last_name: Ostovari Moghaddam
- first_name: Salimov
  full_name: Yernar, Salimov
  last_name: Yernar
- first_name: Ying
  full_name: Xu, Ying
  last_name: Xu
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Chaoqi
  full_name: Zhang, Chaoqi
  last_name: Zhang
- first_name: Linlin
  full_name: Yang, Linlin
  last_name: Yang
- first_name: Yingtang
  full_name: Zhou, Yingtang
  last_name: Zhou
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: He R, Lee S, Ding Y, et al. Amorphous high entropy alloy nanosheets enabling
    robust Li–S batteries. <i>Advanced Functional Materials</i>. 2025. doi:<a href="https://doi.org/10.1002/adfm.202513859">10.1002/adfm.202513859</a>
  apa: He, R., Lee, S., Ding, Y., Huang, C., Lu, X., Zheng, L., … Cabot, A. (2025).
    Amorphous high entropy alloy nanosheets enabling robust Li–S batteries. <i>Advanced
    Functional Materials</i>. Wiley. <a href="https://doi.org/10.1002/adfm.202513859">https://doi.org/10.1002/adfm.202513859</a>
  chicago: He, Ren, Seungho Lee, Yang Ding, Chen Huang, Xuan Lu, Lirong Zheng, Ao
    Yu, et al. “Amorphous High Entropy Alloy Nanosheets Enabling Robust Li–S Batteries.”
    <i>Advanced Functional Materials</i>. Wiley, 2025. <a href="https://doi.org/10.1002/adfm.202513859">https://doi.org/10.1002/adfm.202513859</a>.
  ieee: R. He <i>et al.</i>, “Amorphous high entropy alloy nanosheets enabling robust
    Li–S batteries,” <i>Advanced Functional Materials</i>. Wiley, 2025.
  ista: He R, Lee S, Ding Y, Huang C, Lu X, Zheng L, Yu A, Zhang C, Li C, Bi X, Li
    Y, Liao Y, Li J, Ostovari Moghaddam A, Yernar S, Xu Y, Ibáñez M, Zhang C, Yang
    L, Zhou Y, Cabot A. 2025. Amorphous high entropy alloy nanosheets enabling robust
    Li–S batteries. Advanced Functional Materials., e13859.
  mla: He, Ren, et al. “Amorphous High Entropy Alloy Nanosheets Enabling Robust Li–S
    Batteries.” <i>Advanced Functional Materials</i>, e13859, Wiley, 2025, doi:<a
    href="https://doi.org/10.1002/adfm.202513859">10.1002/adfm.202513859</a>.
  short: R. He, S. Lee, Y. Ding, C. Huang, X. Lu, L. Zheng, A. Yu, C. Zhang, C. Li,
    X. Bi, Y. Li, Y. Liao, J. Li, A. Ostovari Moghaddam, S. Yernar, Y. Xu, M. Ibáñez,
    C. Zhang, L. Yang, Y. Zhou, A. Cabot, Advanced Functional Materials (2025).
date_created: 2025-08-17T22:01:37Z
date_published: 2025-08-06T00:00:00Z
date_updated: 2025-09-30T14:20:56Z
day: '06'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1002/adfm.202513859
external_id:
  isi:
  - '001544757200001'
has_accepted_license: '1'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1002/adfm.202513859
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
  name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
    Semiconductors for Waste Heat Recovery'
publication: Advanced Functional Materials
publication_identifier:
  eissn:
  - 1616-3028
  issn:
  - 1616-301X
publication_status: epub_ahead
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Amorphous high entropy alloy nanosheets enabling robust Li–S batteries
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '20192'
abstract:
- lang: eng
  text: We study the physical origin and spectroscopic impact of extreme nebular emission
    in high-redshift galaxies. The nebular continuum, which can appear during an extreme
    starburst, is of particular importance as it tends to redden UV slopes and has
    a significant contribution to the UV luminosities of galaxies. Furthermore, its
    shape can be used to infer the gas density and temperature of the interstellar
    medium. First, we provide a theoretical background, showing how different stellar
    populations (SPS models, initial mass functions (IMFs), and stellar temperatures)
    and nebular conditions impact observed galaxy spectra. We demonstrate that, for
    systems with strong nebular continuum emission, 1) UV fluxes can increase by up
    to 0.7~mag (or more in the case of hot/massive stars) above the stellar continuum,
    which may help reconcile the surprising abundance of bright high-redshift galaxies
    and the elevated UV luminosity density at z>10, 2) at high gas densities, UV slopes
    can redden from \beta<-2.5 to \beta\sim-1, 3) observational measurements of \xi_{\rm
    ion} are gross underestimates, and 4) UV downturns from two-photon emission can
    masquerade as damped Ly\alpha systems. Second, we present a dataset of 58 galaxies
    observed with NIRSpec on JWST at 2.5<z<9.0 that are selected to have strong nebular
    continuum emission via the detection of the Balmer jump. Five of the 58 spectra
    are consistent with being dominated by nebular emission, exhibiting both a Balmer
    jump and a UV downturn consistent with two-photon emission. For some galaxies,
    this may imply the presence of hot massive stars and a top-heavy IMF. We conclude
    by exploring the properties of spectroscopically confirmed z>10 galaxies, finding
    that UV slopes and UV downturns are in some cases redder or steeper than expected
    from SPS models, which may hint at more exotic (e.g. hotter/more massive stars
    or AGN) ionizing sources.
acknowledgement: 'HK thanks Andrey Kravtsov for insightful comments and thoughtful
  discussions. We sincerely thank the PIs and Co-Is of the JWST programs where spectral
  data was made publicly available on the DJA. We refer interested readers to the
  following papers for survey descriptions regarding the spectral data: Bunker et
  al. (2023a); D’Eugenio et al. (2024); Bezanson et al. (2022); Barrufet et al. (2024);
  de Graaff et al. (2024); Finkelstein et al. (2024); Glazebrook et al. (2024); Pierel
  et al. (2024); Siebert et al. (2024); Maseda et al. (2024). This work is based in
  part on observations made with the NASA/ESA/CSA James Webb Space Telescope. The
  data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope
  Science Institute, which is operated by the Association of Universities for Research
  in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations
  are associated with programs listed in Table 1. AJC and AS acknowledge funding from
  the “FirstGalaxies” Advanced Grant from the European Research Council (ERC) under
  the European Union’s Horizon 2020 research and innovation programme (Grant agreement
  No. 789056). '
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Harley
  full_name: Katz, Harley
  last_name: Katz
- first_name: Alex J.
  full_name: Cameron, Alex J.
  last_name: Cameron
- first_name: Aayush
  full_name: Saxena, Aayush
  last_name: Saxena
- first_name: Laia
  full_name: Barrufet, Laia
  last_name: Barrufet
- first_name: Nicholas
  full_name: Choustikov, Nicholas
  last_name: Choustikov
- first_name: Nikko J.
  full_name: Cleri, Nikko J.
  last_name: Cleri
- first_name: Anna
  full_name: De Graaff, Anna
  last_name: De Graaff
- first_name: Richard S.
  full_name: Ellis, Richard S.
  last_name: Ellis
- first_name: Robert A.E.
  full_name: Fosbury, Robert A.E.
  last_name: Fosbury
- first_name: Kasper E.
  full_name: Heintz, Kasper E.
  last_name: Heintz
- first_name: Michael
  full_name: Maseda, Michael
  last_name: Maseda
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Ian
  full_name: Mcconachie, Ian
  last_name: Mcconachie
- first_name: Pascal A.
  full_name: Oesch, Pascal A.
  last_name: Oesch
citation:
  ama: 'Katz H, Cameron AJ, Saxena A, et al. 21 Balmer Jump Street: The nebular continuum
    at high redshift and implications for the bright galaxy problem, UV continuum
    slopes, and early stellar populations. <i>The Open Journal of Astrophysics</i>.
    2025;8. doi:<a href="https://doi.org/10.33232/001c.142570">10.33232/001c.142570</a>'
  apa: 'Katz, H., Cameron, A. J., Saxena, A., Barrufet, L., Choustikov, N., Cleri,
    N. J., … Oesch, P. A. (2025). 21 Balmer Jump Street: The nebular continuum at
    high redshift and implications for the bright galaxy problem, UV continuum slopes,
    and early stellar populations. <i>The Open Journal of Astrophysics</i>. Maynooth
    Academic Publishing. <a href="https://doi.org/10.33232/001c.142570">https://doi.org/10.33232/001c.142570</a>'
  chicago: 'Katz, Harley, Alex J. Cameron, Aayush Saxena, Laia Barrufet, Nicholas
    Choustikov, Nikko J. Cleri, Anna De Graaff, et al. “21 Balmer Jump Street: The
    Nebular Continuum at High Redshift and Implications for the Bright Galaxy Problem,
    UV Continuum Slopes, and Early Stellar Populations.” <i>The Open Journal of Astrophysics</i>.
    Maynooth Academic Publishing, 2025. <a href="https://doi.org/10.33232/001c.142570">https://doi.org/10.33232/001c.142570</a>.'
  ieee: 'H. Katz <i>et al.</i>, “21 Balmer Jump Street: The nebular continuum at high
    redshift and implications for the bright galaxy problem, UV continuum slopes,
    and early stellar populations,” <i>The Open Journal of Astrophysics</i>, vol.
    8. Maynooth Academic Publishing, 2025.'
  ista: 'Katz H, Cameron AJ, Saxena A, Barrufet L, Choustikov N, Cleri NJ, De Graaff
    A, Ellis RS, Fosbury RAE, Heintz KE, Maseda M, Matthee JJ, Mcconachie I, Oesch
    PA. 2025. 21 Balmer Jump Street: The nebular continuum at high redshift and implications
    for the bright galaxy problem, UV continuum slopes, and early stellar populations.
    The Open Journal of Astrophysics. 8.'
  mla: 'Katz, Harley, et al. “21 Balmer Jump Street: The Nebular Continuum at High
    Redshift and Implications for the Bright Galaxy Problem, UV Continuum Slopes,
    and Early Stellar Populations.” <i>The Open Journal of Astrophysics</i>, vol.
    8, Maynooth Academic Publishing, 2025, doi:<a href="https://doi.org/10.33232/001c.142570">10.33232/001c.142570</a>.'
  short: H. Katz, A.J. Cameron, A. Saxena, L. Barrufet, N. Choustikov, N.J. Cleri,
    A. De Graaff, R.S. Ellis, R.A.E. Fosbury, K.E. Heintz, M. Maseda, J.J. Matthee,
    I. Mcconachie, P.A. Oesch, The Open Journal of Astrophysics 8 (2025).
date_created: 2025-08-17T22:01:37Z
date_published: 2025-07-25T00:00:00Z
date_updated: 2025-09-30T14:29:33Z
day: '25'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.33232/001c.142570
external_id:
  arxiv:
  - '2408.03189'
file:
- access_level: open_access
  checksum: ba469d132907147f9e86d87f9124dd14
  content_type: application/pdf
  creator: dernst
  date_created: 2025-09-30T14:28:25Z
  date_updated: 2025-09-30T14:28:25Z
  file_id: '20412'
  file_name: 2025_OpenJourAstrophysics_Katz.pdf
  file_size: 1836432
  relation: main_file
  success: 1
file_date_updated: 2025-09-30T14:28:25Z
has_accepted_license: '1'
intvolume: '         8'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: The Open Journal of Astrophysics
publication_identifier:
  eissn:
  - 2565-6120
publication_status: published
publisher: Maynooth Academic Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: '21 Balmer Jump Street: The nebular continuum at high redshift and implications
  for the bright galaxy problem, UV continuum slopes, and early stellar populations'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '20193'
abstract:
- lang: eng
  text: Understanding the rapid formation of supermassive black holes in the early
    Universe requires insights into stellar mass growth in host galaxies. Here we
    present NIRSpec rest-frame optical spectra and NIRCam imaging from JWST of two
    galaxies at z > 6, both hosting moderate-luminosity quasars. These galaxies exhibit
    Balmer absorption lines, like low-redshift post-starburst galaxies. Our analyses
    of the medium-resolution spectra and multiband photometry show that the bulk of
    the stellar mass (log(M*/M☉) ≥ 10.6) formed in starburst episodes at redshift
    9 and 7. One of the galaxies shows a clear Balmer break and lacks spatially resolved
    Hα emission. It falls well below the star-formation main sequence at z = 6, indicating
    quiescence. The other is transitioning to quiescence; together, these massive
    galaxies are among the most distant post-starburst systems known. The blueshifted
    wings of the quasar [O iii] emission lines indicate quasar-driven outflow, which
    possibly influences star formation. Direct stellar velocity dispersion measurements
    reveal that one galaxy follows the local black hole mass versus σ* relation whereas
    the other is overmassive. The existence of massive post-starburst galaxies hosting
    billion-solar-mass black holes in short-lived quasar phases indicates that supermassive
    black holes and host galaxies played a principal role in each other’s rapid early
    formation.
acknowledgement: We thank A. C. Carnall for supporting our use of Bagpipes. We thank
  Y. Fu for his help on the use of QSOFitMORE. We thank J. Greene, S. Toft, T. Kakimoto
  and M. Tanaka for fruitful discussions. This work is based on observations made
  with the NASA/ESA/CSA JWST. The data were obtained from the Mikulski Archive for
  Space Telescopes at the Space Telescope Science Institute, which is operated by
  the Association of Universities for Research in Astronomy, under NASA contract NAS
  5-03127 for JWST. These observations are associated with programmes GO 1967 and
  GO 3859. Support for these programmes was provided by NASA through a grant from
  the Space Telescope Science Institute. This work was supported by World Premier
  International Research Center Initiative, MEXT, Japan. This work used computing
  resources at Kavli IPMU. M.O., X.D., J.D.S., Y.M., T.I., K. Ito, K.K. and H.U. are
  supported by the Japan Society for the Promotion of Science (KAKENHI Grant Numbers
  JP24K22894, JP22K14071, JP18H01251, JP22H01262, JP21H04494, JP20K14531, JP23K13141,
  JP17H06130 and JP20H01953). M.O. and K. Inayoshi acknowledge support from the National
  Natural Science Foundation of China (Grant Numbers 12150410307, 12073003, 11721303,
  11991052 and 11950410493). K. Inayoshi acknowledges support from the China Manned
  Space Project (Grant Numbers CMS-CSST-2021-A04 and CMS-CSST-2021-A06). S.E.I.B.
  is funded by the Deutsche Forschungsgemeinschaft (German Research Foundation) under
  Emmy Noether Grant Number BO 5771/1-1. Z.H., T.T. and M.S. acknowledge support from
  the NSF (Grant Numbers AST-2006176, AST-1907208 and AST-2006177). A.L. acknowledges
  funding from MUR (Grant Number PRIN 2022935STW). B.T. acknowledges support from
  the European Research Council (ERC) under the European Union’s Horizon 2020 research
  and innovation programme (Grant Agreement Number 950533) and from the Israel Science
  Foundation (Grant Number 1849/19). F. Walter acknowledges support from the ERC (Grant
  Cosmic_gas). J.-T.S. is supported by the Deutsche Forschungsgemeinschaft (Project
  Number 518006966). M.T. acknowledges support from the NWO (Grant Number 0.16.VIDI.189.162,
  ODIN). S.F. acknowledges support from NASA through the NASA Hubble Fellowship (Grant
  Number HST-HF2-51505.001-A awarded by the Space Telescope Science Institute). K.
  Iwasawa acknowledges support under Grant Number PID2022-136827NB-C44 funded by MCIN/AEI/10.13039/501100011033
  /FEDER, EU. M. Vestergaard gratefully acknowledges financial support from the Independent
  Research Fund Denmark (Grant Numbers DFF 8021-00130 and 3103-00146). F. Wang acknowledges
  support from the NSF (Award Number AST-2513040). R.B. is supported by the SNSF through
  the Ambizione Grant PZ00P2_223532.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Masafusa
  full_name: Onoue, Masafusa
  last_name: Onoue
- first_name: Xuheng
  full_name: Ding, Xuheng
  last_name: Ding
- first_name: John D.
  full_name: Silverman, John D.
  last_name: Silverman
- first_name: Yoshiki
  full_name: Matsuoka, Yoshiki
  last_name: Matsuoka
- first_name: Takuma
  full_name: Izumi, Takuma
  last_name: Izumi
- first_name: Michael A.
  full_name: Strauss, Michael A.
  last_name: Strauss
- first_name: Charlotte
  full_name: Ward, Charlotte
  last_name: Ward
- first_name: Camryn L.
  full_name: Phillips, Camryn L.
  last_name: Phillips
- first_name: Kei
  full_name: Ito, Kei
  last_name: Ito
- first_name: Irham T.
  full_name: Andika, Irham T.
  last_name: Andika
- first_name: Kentaro
  full_name: Aoki, Kentaro
  last_name: Aoki
- first_name: Junya
  full_name: Arita, Junya
  last_name: Arita
- first_name: Shunsuke
  full_name: Baba, Shunsuke
  last_name: Baba
- first_name: Rebekka
  full_name: Bieri, Rebekka
  last_name: Bieri
- first_name: Sarah E.I.
  full_name: Bosman, Sarah E.I.
  last_name: Bosman
- first_name: Anna Christina
  full_name: Eilers, Anna Christina
  last_name: Eilers
- first_name: Seiji
  full_name: Fujimoto, Seiji
  last_name: Fujimoto
- first_name: Melanie
  full_name: Habouzit, Melanie
  last_name: Habouzit
- first_name: Zoltán
  full_name: Haiman, Zoltán
  id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
  last_name: Haiman
  orcid: 0000-0003-3633-5403
- first_name: Masatoshi
  full_name: Imanishi, Masatoshi
  last_name: Imanishi
- first_name: Kohei
  full_name: Inayoshi, Kohei
  last_name: Inayoshi
- first_name: Kazushi
  full_name: Iwasawa, Kazushi
  last_name: Iwasawa
- first_name: Knud
  full_name: Jahnke, Knud
  last_name: Jahnke
- first_name: Nobunari
  full_name: Kashikawa, Nobunari
  last_name: Kashikawa
- first_name: Toshihiro
  full_name: Kawaguchi, Toshihiro
  last_name: Kawaguchi
- first_name: Kotaro
  full_name: Kohno, Kotaro
  last_name: Kohno
- first_name: Chien Hsiu
  full_name: Lee, Chien Hsiu
  last_name: Lee
- first_name: Junyao
  full_name: Li, Junyao
  last_name: Li
- first_name: Alessandro
  full_name: Lupi, Alessandro
  last_name: Lupi
- first_name: Jianwei
  full_name: Lyu, Jianwei
  last_name: Lyu
- first_name: Tohru
  full_name: Nagao, Tohru
  last_name: Nagao
- first_name: Roderik
  full_name: Overzier, Roderik
  last_name: Overzier
- first_name: Jan Torge
  full_name: Schindler, Jan Torge
  last_name: Schindler
- first_name: Malte
  full_name: Schramm, Malte
  last_name: Schramm
- first_name: Matthew T.
  full_name: Scoggins, Matthew T.
  last_name: Scoggins
- first_name: Kazuhiro
  full_name: Shimasaku, Kazuhiro
  last_name: Shimasaku
- first_name: Yoshiki
  full_name: Toba, Yoshiki
  last_name: Toba
- first_name: Benny
  full_name: Trakhtenbrot, Benny
  last_name: Trakhtenbrot
- first_name: Maxime
  full_name: Trebitsch, Maxime
  last_name: Trebitsch
- first_name: Tommaso
  full_name: Treu, Tommaso
  last_name: Treu
- first_name: Hideki
  full_name: Umehata, Hideki
  last_name: Umehata
- first_name: Bram
  full_name: Venemans, Bram
  last_name: Venemans
- first_name: Marianne
  full_name: Vestergaard, Marianne
  last_name: Vestergaard
- first_name: Marta
  full_name: Volonteri, Marta
  last_name: Volonteri
- first_name: Fabian
  full_name: Walter, Fabian
  last_name: Walter
- first_name: Feige
  full_name: Wang, Feige
  last_name: Wang
- first_name: Jinyi
  full_name: Yang, Jinyi
  last_name: Yang
- first_name: Haowen
  full_name: Zhang, Haowen
  last_name: Zhang
citation:
  ama: Onoue M, Ding X, Silverman JD, et al. A post-starburst pathway for the formation
    of massive galaxies and black holes at z &#62; 6. <i>Nature Astronomy</i>. 2025;9:1541-1552.
    doi:<a href="https://doi.org/10.1038/s41550-025-02628-1">10.1038/s41550-025-02628-1</a>
  apa: Onoue, M., Ding, X., Silverman, J. D., Matsuoka, Y., Izumi, T., Strauss, M.
    A., … Zhang, H. (2025). A post-starburst pathway for the formation of massive
    galaxies and black holes at z &#62; 6. <i>Nature Astronomy</i>. Springer Nature.
    <a href="https://doi.org/10.1038/s41550-025-02628-1">https://doi.org/10.1038/s41550-025-02628-1</a>
  chicago: Onoue, Masafusa, Xuheng Ding, John D. Silverman, Yoshiki Matsuoka, Takuma
    Izumi, Michael A. Strauss, Charlotte Ward, et al. “A Post-Starburst Pathway for
    the Formation of Massive Galaxies and Black Holes at z &#62; 6.” <i>Nature Astronomy</i>.
    Springer Nature, 2025. <a href="https://doi.org/10.1038/s41550-025-02628-1">https://doi.org/10.1038/s41550-025-02628-1</a>.
  ieee: M. Onoue <i>et al.</i>, “A post-starburst pathway for the formation of massive
    galaxies and black holes at z &#62; 6,” <i>Nature Astronomy</i>, vol. 9. Springer
    Nature, pp. 1541–1552, 2025.
  ista: Onoue M, Ding X, Silverman JD, Matsuoka Y, Izumi T, Strauss MA, Ward C, Phillips
    CL, Ito K, Andika IT, Aoki K, Arita J, Baba S, Bieri R, Bosman SEI, Eilers AC,
    Fujimoto S, Habouzit M, Haiman Z, Imanishi M, Inayoshi K, Iwasawa K, Jahnke K,
    Kashikawa N, Kawaguchi T, Kohno K, Lee CH, Li J, Lupi A, Lyu J, Nagao T, Overzier
    R, Schindler JT, Schramm M, Scoggins MT, Shimasaku K, Toba Y, Trakhtenbrot B,
    Trebitsch M, Treu T, Umehata H, Venemans B, Vestergaard M, Volonteri M, Walter
    F, Wang F, Yang J, Zhang H. 2025. A post-starburst pathway for the formation of
    massive galaxies and black holes at z &#62; 6. Nature Astronomy. 9, 1541–1552.
  mla: Onoue, Masafusa, et al. “A Post-Starburst Pathway for the Formation of Massive
    Galaxies and Black Holes at z &#62; 6.” <i>Nature Astronomy</i>, vol. 9, Springer
    Nature, 2025, pp. 1541–52, doi:<a href="https://doi.org/10.1038/s41550-025-02628-1">10.1038/s41550-025-02628-1</a>.
  short: M. Onoue, X. Ding, J.D. Silverman, Y. Matsuoka, T. Izumi, M.A. Strauss, C.
    Ward, C.L. Phillips, K. Ito, I.T. Andika, K. Aoki, J. Arita, S. Baba, R. Bieri,
    S.E.I. Bosman, A.C. Eilers, S. Fujimoto, M. Habouzit, Z. Haiman, M. Imanishi,
    K. Inayoshi, K. Iwasawa, K. Jahnke, N. Kashikawa, T. Kawaguchi, K. Kohno, C.H.
    Lee, J. Li, A. Lupi, J. Lyu, T. Nagao, R. Overzier, J.T. Schindler, M. Schramm,
    M.T. Scoggins, K. Shimasaku, Y. Toba, B. Trakhtenbrot, M. Trebitsch, T. Treu,
    H. Umehata, B. Venemans, M. Vestergaard, M. Volonteri, F. Walter, F. Wang, J.
    Yang, H. Zhang, Nature Astronomy 9 (2025) 1541–1552.
date_created: 2025-08-17T22:01:38Z
date_published: 2025-10-01T00:00:00Z
date_updated: 2025-12-30T13:08:12Z
day: '01'
department:
- _id: ZoHa
doi: 10.1038/s41550-025-02628-1
external_id:
  arxiv:
  - '2409.07113'
  isi:
  - '001548138600001'
intvolume: '         9'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2409.07113
month: '10'
oa: 1
oa_version: Preprint
page: 1541-1552
publication: Nature Astronomy
publication_identifier:
  eissn:
  - 2397-3366
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A post-starburst pathway for the formation of massive galaxies and black holes
  at z > 6
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20217'
abstract:
- lang: eng
  text: "We present Virgil, a Mid-Infrared Instrument (MIRI) extremely red object
    detected with the F1000W filter as part of the MIRI Deep Imaging Survey observations
    of the Hubble Ultra Deep Field. Virgil is an Lyα emitter (LAE) at zspec = 6.6312
    ± 0.0019 (from the Very Large Telescope/MUSE) with a rest-frame UV-to-optical
    spectral energy distribution (SED) typical of LAEs at similar redshifts. However,
    MIRI observations reveal an unexpected extremely red color at rest-frame near-infrared
    (NIR) wavelengths, F444W − F1000W = 2.33 ± 0.06. Such a steep\r\nrise in the NIR,
    completely missed without MIRI imaging, is poorly reproduced by models including
    only stellar populations and hints toward the presence of an active galactic nucleus,
    although alternative explanations such as extreme dust obscuration and strong
    nebular continuum and emission lines contribution due to young stellar ages cannot
    be completely ruled out. According to the shape of its overall SED, Virgil belongs
    to the recently discovered\r\npopulation of little red dots but displays an extended
    rest-frame UV-optical wavelength morphology following a 2DSérsic profile with
    an average index of n = 0.93+0.85_0.31 and re = 0.49+0.05_0.11  pkpc. Only at
    MIRI wavelengths, Virgil is unresolved due to the coarser point-spread function.
    This discovery demonstrates the crucial importance of deep MIRI surveys to reveal
    the true nature and properties of high-z galaxies that otherwise would be misinterpreted
    and raises the question of how common Virgil-like objects could be in the early
    Universe."
acknowledgement: "The authors thank R. Cooper, G. Yang, V. Kokorev, D. Wen, C. Williams,
  and H. Übler for useful discussions and comments.\r\nE.I. and K.I.C. acknowledge
  funding from the Netherlands Research School for Astronomy (NOVA). K.I.C. acknowledges
  funding from the Dutch Research Council (NWO) through the award of the Vici grant
  VI.C.212.036. A.A.-H. acknowledges support from grant PID2021-124665NB-I00 funded
  by MCIN/AEI/10.13039/ 501100011033 and by “ERDF A way of making Europe.” P.G.P.-G.
  acknowledges support from grant PID2022-139567NB-I00 funded by the Spanish Ministerio
  de Ciencia e Innovación MCIN/AEI/10.13039/501100011033, FEDER Una manera de hacer
  Europa. J.A.-M., A.C.-G., and L.C. acknowledge support by grant PIB2021-127718NB-100
  from the Spanish Ministry of Science and Innovation/State Agency of Research MCIN/AEI/10.13039/501100011033
  and by “ERDF A way of making Europe.” L.C. thanks the support from the Cosmic Dawn
  Center received during visits to DAWN as an international associate. L.C. acknowledges
  support by grants PIB2021-127718NB-100 and PID2022-139567NB-I00 from the Spanish
  Ministry of Science and Innovation/State Agency of Research MCIN/AEI/10.13039/501100011033
  and by “ERDF A way of making Europe.” T.R.G. acknowledges support from the Carlsberg
  Foundation (grant No. CF20-0534). S.G. acknowledges financial support from the Cosmic
  Dawn Center (DAWN), funded by the Danish National Research Foundation (DNRF) under
  grant No. 140. This work was supported by research grants (VIL16599, VIL54489) from
  VILLUM FONDEN. J.P.P. and T.V.T. acknowledge financial support from the UK Science
  and Technology Facilities Council and the UK Space Agency.\r\n\r\nThis work is based
  on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data
  were obtained from the MAST at the Space Telescope Science Institute, which is operated
  by the Association of Universities for Research in Astronomy, Inc., under NASA contract
  NAS 5-03127 for JWST. These observations are associated with programs GO #1963,
  GO #1895, and GTO #1283. The authors acknowledge the team led by co-PIs: C. Williams,
  M. Maseda, and S. Tacchella, and PI P. Oesch, for developing their respective observing
  programs with a zero-exclusive-access period. Also based on observations made with
  the NASA/ESA HST obtained from the Space Telescope Science Institute, which is operated
  by the Association of Universities for Research in Astronomy, Inc., under NASA contract
  NAS 5-26555. The work presented here is the effort of the entire MIRI team, and
  the enthusiasm within the MIRI partnership is a significant factor in its success.
  MIRI draws on the scientific and technical expertise of the following organizations:
  Ames Research Center, USA; Airbus Defence and Space, UK; CEA-Irfu, Saclay, France;
  Centre Spatial de Liège, Belgium; Consejo Superior de Investigaciones Científicas,
  Spain; Carl Zeiss Optronics, Germany; Chalmers University of Technology, Sweden;
  Danish Space Research Institute, Denmark; Dublin Institute for Advanced Studies,
  Ireland; European Space Agency, Netherlands; ETCA, Belgium; ETH Zurich, Switzerland;
  Goddard Space Flight Center, USA; Institute d’Astrophysique Spatiale, France; Instituto
  Nacional de Técnica Aeroespacial, Spain; Institute for Astronomy, Edinburgh, UK;
  Jet Propulsion Laboratory, USA; Laboratoire d’Astrophysique de Marseille (LAM),
  France; Leiden University, Netherlands; Lockheed Advanced Technology Center (USA);
  NOVA Opt-IR group at Dwingeloo, Netherlands; Northrop Grumman, USA; Max-Planck Institut
  für Astronomie (MPIA), Heidelberg, Germany; Laboratoire d’Etudes Spatiales et d’Instrumentation
  en Astrophysique (LESIA), France; Paul Scherrer Institut, Switzerland; Raytheon
  Vision Systems, USA; RUAG Aerospace, Switzerland; Rutherford Appleton Laboratory
  (RAL Space), UK; Space Telescope Science Institute, USA; Toegepast-Natuurwetenschappelijk
  Onderzoek (TNO-TPD), Netherlands; UK Astronomy Technology Centre, UK; University
  College London, UK; University of Amsterdam, Netherlands; University of Arizona,
  USA; University of Cardiff, UK; University of Cologne, Germany; University of Ghent;
  University of Groningen, Netherlands; University of Leicester, UK; University of
  Leuven, Belgium; University of Stockholm, Sweden; Utah State University, USA.\r\nFor
  the purpose of open access, the author has applied a Creative Commons Attribution
  (CC BY) licence to the Author Accepted Manuscript version arising from this submission."
article_number: '160'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Edoardo
  full_name: Iani, Edoardo
  id: 4053390a-6b68-11ef-9828-a3b8adef8d0a
  last_name: Iani
  orcid: 0000-0001-8386-3546
- first_name: Pierluigi
  full_name: Rinaldi, Pierluigi
  last_name: Rinaldi
- first_name: Karina I.
  full_name: Caputi, Karina I.
  last_name: Caputi
- first_name: Marianna
  full_name: Annunziatella, Marianna
  last_name: Annunziatella
- first_name: Danial
  full_name: Langeroodi, Danial
  last_name: Langeroodi
- first_name: Jens
  full_name: Melinder, Jens
  last_name: Melinder
- first_name: Pablo G.
  full_name: Pérez-González, Pablo G.
  last_name: Pérez-González
- first_name: Javier
  full_name: Álvarez-Márquez, Javier
  last_name: Álvarez-Márquez
- first_name: Leindert A.
  full_name: Boogaard, Leindert A.
  last_name: Boogaard
- first_name: Sarah E.I.
  full_name: Bosman, Sarah E.I.
  last_name: Bosman
- first_name: Luca
  full_name: Costantin, Luca
  last_name: Costantin
- first_name: Thibaud
  full_name: Moutard, Thibaud
  last_name: Moutard
- first_name: Luis
  full_name: Colina, Luis
  last_name: Colina
- first_name: Göran
  full_name: Östlin, Göran
  last_name: Östlin
- first_name: Thomas R.
  full_name: Greve, Thomas R.
  last_name: Greve
- first_name: Gillian
  full_name: Wright, Gillian
  last_name: Wright
- first_name: Almudena
  full_name: Alonso-Herrero, Almudena
  last_name: Alonso-Herrero
- first_name: Arjan
  full_name: Bik, Arjan
  last_name: Bik
- first_name: Steven
  full_name: Gillman, Steven
  last_name: Gillman
- first_name: Alejandro
  full_name: Crespo Gómez, Alejandro
  last_name: Crespo Gómez
- first_name: Jens
  full_name: Hjorth, Jens
  last_name: Hjorth
- first_name: Sarah
  full_name: Kendrew, Sarah
  last_name: Kendrew
- first_name: Alvaro
  full_name: Labiano, Alvaro
  last_name: Labiano
- first_name: John P.
  full_name: Pye, John P.
  last_name: Pye
- first_name: Tuomo V.
  full_name: Tikkanen, Tuomo V.
  last_name: Tikkanen
- first_name: Fabian
  full_name: Walter, Fabian
  last_name: Walter
- first_name: Manuel
  full_name: Güdel, Manuel
  last_name: Güdel
- first_name: Thomas
  full_name: Henning, Thomas
  last_name: Henning
- first_name: Paul P.
  full_name: Van Der Werf, Paul P.
  last_name: Van Der Werf
citation:
  ama: 'Iani E, Rinaldi P, Caputi KI, et al. MIDIS: MIRI uncovers Virgil, the first
    Little Red Dot with clear detection of its host galaxy at z ≃ 6.6. <i>The Astrophysical
    Journal</i>. 2025;989(2). doi:<a href="https://doi.org/10.3847/1538-4357/ade5a6">10.3847/1538-4357/ade5a6</a>'
  apa: 'Iani, E., Rinaldi, P., Caputi, K. I., Annunziatella, M., Langeroodi, D., Melinder,
    J., … Van Der Werf, P. P. (2025). MIDIS: MIRI uncovers Virgil, the first Little
    Red Dot with clear detection of its host galaxy at z ≃ 6.6. <i>The Astrophysical
    Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ade5a6">https://doi.org/10.3847/1538-4357/ade5a6</a>'
  chicago: 'Iani, Edoardo, Pierluigi Rinaldi, Karina I. Caputi, Marianna Annunziatella,
    Danial Langeroodi, Jens Melinder, Pablo G. Pérez-González, et al. “MIDIS: MIRI
    Uncovers Virgil, the First Little Red Dot with Clear Detection of Its Host Galaxy
    at z ≃ 6.6.” <i>The Astrophysical Journal</i>. IOP Publishing, 2025. <a href="https://doi.org/10.3847/1538-4357/ade5a6">https://doi.org/10.3847/1538-4357/ade5a6</a>.'
  ieee: 'E. Iani <i>et al.</i>, “MIDIS: MIRI uncovers Virgil, the first Little Red
    Dot with clear detection of its host galaxy at z ≃ 6.6,” <i>The Astrophysical
    Journal</i>, vol. 989, no. 2. IOP Publishing, 2025.'
  ista: 'Iani E, Rinaldi P, Caputi KI, Annunziatella M, Langeroodi D, Melinder J,
    Pérez-González PG, Álvarez-Márquez J, Boogaard LA, Bosman SEI, Costantin L, Moutard
    T, Colina L, Östlin G, Greve TR, Wright G, Alonso-Herrero A, Bik A, Gillman S,
    Crespo Gómez A, Hjorth J, Kendrew S, Labiano A, Pye JP, Tikkanen TV, Walter F,
    Güdel M, Henning T, Van Der Werf PP. 2025. MIDIS: MIRI uncovers Virgil, the first
    Little Red Dot with clear detection of its host galaxy at z ≃ 6.6. The Astrophysical
    Journal. 989(2), 160.'
  mla: 'Iani, Edoardo, et al. “MIDIS: MIRI Uncovers Virgil, the First Little Red Dot
    with Clear Detection of Its Host Galaxy at z ≃ 6.6.” <i>The Astrophysical Journal</i>,
    vol. 989, no. 2, 160, IOP Publishing, 2025, doi:<a href="https://doi.org/10.3847/1538-4357/ade5a6">10.3847/1538-4357/ade5a6</a>.'
  short: E. Iani, P. Rinaldi, K.I. Caputi, M. Annunziatella, D. Langeroodi, J. Melinder,
    P.G. Pérez-González, J. Álvarez-Márquez, L.A. Boogaard, S.E.I. Bosman, L. Costantin,
    T. Moutard, L. Colina, G. Östlin, T.R. Greve, G. Wright, A. Alonso-Herrero, A.
    Bik, S. Gillman, A. Crespo Gómez, J. Hjorth, S. Kendrew, A. Labiano, J.P. Pye,
    T.V. Tikkanen, F. Walter, M. Güdel, T. Henning, P.P. Van Der Werf, The Astrophysical
    Journal 989 (2025).
date_created: 2025-08-24T22:01:29Z
date_published: 2025-08-20T00:00:00Z
date_updated: 2026-02-16T12:43:12Z
day: '20'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.3847/1538-4357/ade5a6
external_id:
  arxiv:
  - '2406.18207'
  isi:
  - '001548132000001'
file:
- access_level: open_access
  checksum: 92196e8352dddb1f305c253da1996ab6
  content_type: application/pdf
  creator: dernst
  date_created: 2025-09-02T06:40:23Z
  date_updated: 2025-09-02T06:40:23Z
  file_id: '20268'
  file_name: 2025_AstrophysicalJour_Iani.pdf
  file_size: 5474992
  relation: main_file
  success: 1
file_date_updated: 2025-09-02T06:40:23Z
has_accepted_license: '1'
intvolume: '       989'
isi: 1
issue: '2'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'MIDIS: MIRI uncovers Virgil, the first Little Red Dot with clear detection
  of its host galaxy at z ≃ 6.6'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 989
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20218'
abstract:
- lang: eng
  text: Humanity has long sought inspiration from nature to innovate materials and
    devices. As science advances, nature-inspired materials are becoming part of our
    lives. Animate materials, characterized by their activity, adaptability, and autonomy,
    emulate properties of living systems. While only biological materials fully embody
    these principles, artificial versions are advancing rapidly, promising transformative
    impacts in the circular economy, health and climate resilience within a generation.
    This roadmap presents authoritative perspectives on animate materials across different
    disciplines and scales, highlighting their interdisciplinary nature and potential
    applications in diverse fields including nanotechnology, robotics and the built
    environment. It underscores the need for concerted efforts to address shared challenges
    such as complexity management, scalability, evolvability, interdisciplinary collaboration,
    and ethical and environmental considerations. The framework defined by classifying
    materials based on their level of animacy can guide this emerging field to encourage
    cooperation and responsible development. By unravelling the mysteries of living
    matter and leveraging its principles, we can design materials and systems that
    will transform our world in a more sustainable manner.
acknowledgement: "Living Architecture is Funded by the EU Horizon 2020 Future Emerging
  Technologies Open programme (2016–2019) Grant Agreement 686585 a consortium of 6
  collaborating institutions—Newcastle University, University of Trento, University
  of the West of England, Spanish National Research Council, Explora Biotech and Liquifer
  Systems Group.\r\n\r\nThe Active Living Infrastructure: Controlled Environment (ALICE)
  project is funded by an EU Innovation Award for the development of a bio-digital
  ‘brick’ prototype, a collaboration between Newcastle University, Translating Nature,
  and the University of the West of England (2019–2021) under EU Grant Agreement No.
  851246.\r\n\r\nMicrobial Hydroponics: Circular Sustainable Electrobiosynthesis (Mi-Hy)
  is Funded by the European Union under Grant Agreement Number 101114746, which is
  a collaboration between Beneficiaries, KU Leuven (Belgium), the University of Southampton
  (UK), SONY Computer Science Laboratory (France), BioFaction KG (Austria), Spanish
  National Research Council (Spain), and Associated Partners, the University of the
  West of England (UK) and University of Southampton (UK). Mi-Hy is also supported
  through the interdisciplinary KU Leuven Institute for Cultural Heritage (HERKUL)."
article_number: '333501'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Giorgio
  full_name: Volpe, Giorgio
  last_name: Volpe
- first_name: Nuno A.M.
  full_name: Araújo, Nuno A.M.
  last_name: Araújo
- first_name: Maria
  full_name: Guix, Maria
  last_name: Guix
- first_name: Mark
  full_name: Miodownik, Mark
  last_name: Miodownik
- first_name: Nicolas
  full_name: Martin, Nicolas
  last_name: Martin
- first_name: Laura
  full_name: Alvarez, Laura
  last_name: Alvarez
- first_name: Juliane
  full_name: Simmchen, Juliane
  last_name: Simmchen
- first_name: Roberto Di
  full_name: Leonardo, Roberto Di
  last_name: Leonardo
- first_name: Nicola
  full_name: Pellicciotta, Nicola
  last_name: Pellicciotta
- first_name: Quentin
  full_name: Martinet, Quentin
  id: b37485a8-d343-11eb-a0e9-df8c484ef8ab
  last_name: Martinet
  orcid: 0000-0002-2916-6632
- first_name: Jérémie A
  full_name: Palacci, Jérémie A
  id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
  last_name: Palacci
  orcid: 0000-0002-7253-9465
- first_name: Wai Kit
  full_name: Ng, Wai Kit
  last_name: Ng
- first_name: Dhruv
  full_name: Saxena, Dhruv
  last_name: Saxena
- first_name: Riccardo
  full_name: Sapienza, Riccardo
  last_name: Sapienza
- first_name: Sara
  full_name: Nadine, Sara
  last_name: Nadine
- first_name: João F.
  full_name: Mano, João F.
  last_name: Mano
- first_name: Reza
  full_name: Mahdavi, Reza
  last_name: Mahdavi
- first_name: Caroline
  full_name: Beck Adiels, Caroline
  last_name: Beck Adiels
- first_name: Joe
  full_name: Forth, Joe
  last_name: Forth
- first_name: Christian
  full_name: Santangelo, Christian
  last_name: Santangelo
- first_name: Stefano
  full_name: Palagi, Stefano
  last_name: Palagi
- first_name: Ji Min
  full_name: Seok, Ji Min
  last_name: Seok
- first_name: Victoria A.
  full_name: Webster-Wood, Victoria A.
  last_name: Webster-Wood
- first_name: Shuhong
  full_name: Wang, Shuhong
  last_name: Wang
- first_name: Lining
  full_name: Yao, Lining
  last_name: Yao
- first_name: Amirreza
  full_name: Aghakhani, Amirreza
  last_name: Aghakhani
- first_name: Thomas
  full_name: Barois, Thomas
  last_name: Barois
- first_name: Hamid
  full_name: Kellay, Hamid
  last_name: Kellay
- first_name: Corentin
  full_name: Coulais, Corentin
  last_name: Coulais
- first_name: Martin
  full_name: Van Hecke, Martin
  last_name: Van Hecke
- first_name: Christopher J.
  full_name: Pierce, Christopher J.
  last_name: Pierce
- first_name: Tianyu
  full_name: Wang, Tianyu
  last_name: Wang
- first_name: Baxi
  full_name: Chong, Baxi
  last_name: Chong
- first_name: Daniel I.
  full_name: Goldman, Daniel I.
  last_name: Goldman
- first_name: Andreagiovanni
  full_name: Reina, Andreagiovanni
  last_name: Reina
- first_name: Vito
  full_name: Trianni, Vito
  last_name: Trianni
- first_name: Giovanni
  full_name: Volpe, Giovanni
  last_name: Volpe
- first_name: Richard
  full_name: Beckett, Richard
  last_name: Beckett
- first_name: Sean P.
  full_name: Nair, Sean P.
  last_name: Nair
- first_name: Rachel
  full_name: Armstrong, Rachel
  last_name: Armstrong
citation:
  ama: Volpe G, Araújo NAM, Guix M, et al. Roadmap for animate matter. <i>Journal
    of Physics Condensed Matter</i>. 2025;37(33). doi:<a href="https://doi.org/10.1088/1361-648X/adebd3">10.1088/1361-648X/adebd3</a>
  apa: Volpe, G., Araújo, N. A. M., Guix, M., Miodownik, M., Martin, N., Alvarez,
    L., … Armstrong, R. (2025). Roadmap for animate matter. <i>Journal of Physics
    Condensed Matter</i>. IOP Publishing. <a href="https://doi.org/10.1088/1361-648X/adebd3">https://doi.org/10.1088/1361-648X/adebd3</a>
  chicago: Volpe, Giorgio, Nuno A.M. Araújo, Maria Guix, Mark Miodownik, Nicolas Martin,
    Laura Alvarez, Juliane Simmchen, et al. “Roadmap for Animate Matter.” <i>Journal
    of Physics Condensed Matter</i>. IOP Publishing, 2025. <a href="https://doi.org/10.1088/1361-648X/adebd3">https://doi.org/10.1088/1361-648X/adebd3</a>.
  ieee: G. Volpe <i>et al.</i>, “Roadmap for animate matter,” <i>Journal of Physics
    Condensed Matter</i>, vol. 37, no. 33. IOP Publishing, 2025.
  ista: Volpe G, Araújo NAM, Guix M, Miodownik M, Martin N, Alvarez L, Simmchen J,
    Leonardo RD, Pellicciotta N, Martinet Q, Palacci JA, Ng WK, Saxena D, Sapienza
    R, Nadine S, Mano JF, Mahdavi R, Beck Adiels C, Forth J, Santangelo C, Palagi
    S, Seok JM, Webster-Wood VA, Wang S, Yao L, Aghakhani A, Barois T, Kellay H, Coulais
    C, Van Hecke M, Pierce CJ, Wang T, Chong B, Goldman DI, Reina A, Trianni V, Volpe
    G, Beckett R, Nair SP, Armstrong R. 2025. Roadmap for animate matter. Journal
    of Physics Condensed Matter. 37(33), 333501.
  mla: Volpe, Giorgio, et al. “Roadmap for Animate Matter.” <i>Journal of Physics
    Condensed Matter</i>, vol. 37, no. 33, 333501, IOP Publishing, 2025, doi:<a href="https://doi.org/10.1088/1361-648X/adebd3">10.1088/1361-648X/adebd3</a>.
  short: G. Volpe, N.A.M. Araújo, M. Guix, M. Miodownik, N. Martin, L. Alvarez, J.
    Simmchen, R.D. Leonardo, N. Pellicciotta, Q. Martinet, J.A. Palacci, W.K. Ng,
    D. Saxena, R. Sapienza, S. Nadine, J.F. Mano, R. Mahdavi, C. Beck Adiels, J. Forth,
    C. Santangelo, S. Palagi, J.M. Seok, V.A. Webster-Wood, S. Wang, L. Yao, A. Aghakhani,
    T. Barois, H. Kellay, C. Coulais, M. Van Hecke, C.J. Pierce, T. Wang, B. Chong,
    D.I. Goldman, A. Reina, V. Trianni, G. Volpe, R. Beckett, S.P. Nair, R. Armstrong,
    Journal of Physics Condensed Matter 37 (2025).
date_created: 2025-08-24T22:01:30Z
date_published: 2025-08-18T00:00:00Z
date_updated: 2025-09-30T14:25:12Z
day: '18'
ddc:
- '530'
department:
- _id: JePa
doi: 10.1088/1361-648X/adebd3
external_id:
  arxiv:
  - '2407.10623'
  isi:
  - '001550090200001'
file:
- access_level: open_access
  checksum: 7309274f78bed785b158bd290337f456
  content_type: application/pdf
  creator: dernst
  date_created: 2025-09-02T07:22:48Z
  date_updated: 2025-09-02T07:22:48Z
  file_id: '20271'
  file_name: 2025_CondensedMatter_Volpe.pdf
  file_size: 8997829
  relation: main_file
  success: 1
file_date_updated: 2025-09-02T07:22:48Z
has_accepted_license: '1'
intvolume: '        37'
isi: 1
issue: '33'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication: Journal of Physics Condensed Matter
publication_identifier:
  eissn:
  - 1361-648X
  issn:
  - 0953-8984
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Roadmap for animate matter
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 37
year: '2025'
...
---
OA_type: closed access
_id: '20219'
abstract:
- lang: eng
  text: Reproduction is a fundamental biological process, with organisms reproducing
    sexually, asexually, and, in some cases, utilizing both modes of reproduction
    within the same population. Does the ability to reproduce through a combination
    of asexual and sexual modes offer an evolutionary advantage over relying on either
    mode alone? Here, we introduce an empirically driven theoretical model to examine
    the dynamics and interplay between sexual and asexual reproduction in stick insect
    populations. We analyse it using a novel phase transition approach and corroborate
    it using published experimental data. We find that the presence of males can either
    increase or decrease the overall population size. However, maintaining an optimal
    ratio of parthenogenetic to sexual reproduction is crucial for male resilience,
    effectively delaying male extinction. Conversely, extreme levels of parthenogenetic
    reproduction—whether too high or too low—can lead to male extinction, emphasizing
    the need for a balanced number of virgin females to ensure the persistence of
    males. Our model also explains male absence in Carausius morosus and persistence
    in Extatosoma tiaratum. Our findings provide valuable insights into the interplay
    of reproductive strategies and contribute to broader discussions on the transitions
    between sexual and asexual reproduction.
acknowledgement: We acknowledge Prof. Uri Alon for introducing us to the topic of
  systems biology during the graduate course at the Weizmann Institute of Science,
  whose insights and teachings have greatly inspired this work.
article_number: '20250202'
article_processing_charge: No
article_type: original
author:
- first_name: Oran
  full_name: Ayalon, Oran
  last_name: Ayalon
- first_name: Harikrishnan
  full_name: Rajendran, Harikrishnan
  id: 876b6b34-8ff4-11ec-97c9-8d95a7aae416
  last_name: Rajendran
citation:
  ama: Ayalon O, Rajendran H. Interplay of asexual and sexual reproduction in bifunctional
    insects. <i>Journal of the Royal Society Interface</i>. 2025;22(229). doi:<a href="https://doi.org/10.1098/rsif.2025.0202">10.1098/rsif.2025.0202</a>
  apa: Ayalon, O., &#38; Rajendran, H. (2025). Interplay of asexual and sexual reproduction
    in bifunctional insects. <i>Journal of the Royal Society Interface</i>. The Royal
    Society. <a href="https://doi.org/10.1098/rsif.2025.0202">https://doi.org/10.1098/rsif.2025.0202</a>
  chicago: Ayalon, Oran, and Harikrishnan Rajendran. “Interplay of Asexual and Sexual
    Reproduction in Bifunctional Insects.” <i>Journal of the Royal Society Interface</i>.
    The Royal Society, 2025. <a href="https://doi.org/10.1098/rsif.2025.0202">https://doi.org/10.1098/rsif.2025.0202</a>.
  ieee: O. Ayalon and H. Rajendran, “Interplay of asexual and sexual reproduction
    in bifunctional insects,” <i>Journal of the Royal Society Interface</i>, vol.
    22, no. 229. The Royal Society, 2025.
  ista: Ayalon O, Rajendran H. 2025. Interplay of asexual and sexual reproduction
    in bifunctional insects. Journal of the Royal Society Interface. 22(229), 20250202.
  mla: Ayalon, Oran, and Harikrishnan Rajendran. “Interplay of Asexual and Sexual
    Reproduction in Bifunctional Insects.” <i>Journal of the Royal Society Interface</i>,
    vol. 22, no. 229, 20250202, The Royal Society, 2025, doi:<a href="https://doi.org/10.1098/rsif.2025.0202">10.1098/rsif.2025.0202</a>.
  short: O. Ayalon, H. Rajendran, Journal of the Royal Society Interface 22 (2025).
corr_author: '1'
date_created: 2025-08-24T22:01:30Z
date_published: 2025-08-13T00:00:00Z
date_updated: 2025-09-30T14:24:40Z
day: '13'
department:
- _id: SyCr
doi: 10.1098/rsif.2025.0202
external_id:
  isi:
  - '001548084900001'
  pmid:
  - '40799050'
intvolume: '        22'
isi: 1
issue: '229'
language:
- iso: eng
month: '08'
oa_version: None
pmid: 1
publication: Journal of the Royal Society Interface
publication_identifier:
  eissn:
  - 1742-5662
  issn:
  - 1742-5689
publication_status: published
publisher: The Royal Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Interplay of asexual and sexual reproduction in bifunctional insects
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 22
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '20220'
abstract:
- lang: eng
  text: Stress granules (SG) are biomolecular condensates that represent an adaptive
    response of cells to various stresses, including heat. However, the cell type–specific
    function and relevance of SG formation, especially during reproductive development,
    are largely not understood. Here, we show that the meiotic A-type cyclin TARDY
    ASYNCHRONOUS MEIOSIS (TAM) is recruited to SGs in male meiocytes of Arabidopsis
    after exposure to heat. We find that the amino terminus of TAM is necessary and
    sufficient for the localization of proteins to meiotic SGs. Swapping the amino
    terminus of TAM with the one of its sister protein CYCA1;1 resulted in a separation-of-function
    allele of TAM, which prevents the partitioning of TAM to SGs while restoring a
    wild-type phenotype in a tam mutant background under nonheat stress conditions.
    Notably, plants expressing this TAM version prematurely terminate meiosis under
    heat resulting in unreduced gametes. Thus, the formation of TAM-containing SGs
    is necessary for genome stability under heat stress.
acknowledged_ssus:
- _id: Bio
acknowledgement: "We thank L. Strader (Duke University, Durham) and A. Holehouse (Washington
  University, Saint Louis) for discussion and input in LLPS. We thank T. Nakagawa
  (Shimane University, Matsue) for providing the pGWB604 Gateway vector containing
  bar gene identified by Meiji Seika Kaisha Ltd. We thank M. Heese (Hamburg University)
  for the critical reading and comments on this manuscript. We further thank J. Mehrmann
  (Hamburg University) for technical assistance. We thank the ISTA imaging facility
  for assistance for microscopy.\r\nThis project has received funding from JST-PRESTO
  (JPMJPR18H7), JST-CREST (JPMJCR18H4), European Union’s Horizon 2020 under MSCA grant
  101034413, and a federal grant from the state of Hamburg (LFF-BiCon)."
article_processing_charge: Yes
article_type: original
author:
- first_name: Joke G
  full_name: De Jaeger-Braet, Joke G
  id: 26bd38d3-c59a-11ee-a1af-d7a988cafcc5
  last_name: De Jaeger-Braet
- first_name: Merle
  full_name: Hartmann, Merle
  last_name: Hartmann
- first_name: Lev
  full_name: Böttger, Lev
  last_name: Böttger
- first_name: Chao
  full_name: Yang, Chao
  id: 082e3e6e-8069-11ed-8390-c8cce7b1aaca
  last_name: Yang
- first_name: Takahiro
  full_name: Hamada, Takahiro
  last_name: Hamada
- first_name: Stefan
  full_name: Hoth, Stefan
  last_name: Hoth
- first_name: Xiaoqi
  full_name: Feng, Xiaoqi
  id: e0164712-22ee-11ed-b12a-d80fcdf35958
  last_name: Feng
  orcid: 0000-0002-4008-1234
- first_name: Magdalena
  full_name: Weingartner, Magdalena
  last_name: Weingartner
- first_name: Arp
  full_name: Schnittger, Arp
  last_name: Schnittger
citation:
  ama: De Jaeger-Braet JG, Hartmann M, Böttger L, et al. The recruitment of the A-type
    cyclin TAM to stress granules is crucial for meiotic fidelity under heat. <i>Science
    Advances</i>. 2025;11(32):eadr5694. doi:<a href="https://doi.org/10.1126/sciadv.adr5694">10.1126/sciadv.adr5694</a>
  apa: De Jaeger-Braet, J. G., Hartmann, M., Böttger, L., Yang, C., Hamada, T., Hoth,
    S., … Schnittger, A. (2025). The recruitment of the A-type cyclin TAM to stress
    granules is crucial for meiotic fidelity under heat. <i>Science Advances</i>.
    AAAS. <a href="https://doi.org/10.1126/sciadv.adr5694">https://doi.org/10.1126/sciadv.adr5694</a>
  chicago: De Jaeger-Braet, Joke G, Merle Hartmann, Lev Böttger, Chao Yang, Takahiro
    Hamada, Stefan Hoth, Xiaoqi Feng, Magdalena Weingartner, and Arp Schnittger. “The
    Recruitment of the A-Type Cyclin TAM to Stress Granules Is Crucial for Meiotic
    Fidelity under Heat.” <i>Science Advances</i>. AAAS, 2025. <a href="https://doi.org/10.1126/sciadv.adr5694">https://doi.org/10.1126/sciadv.adr5694</a>.
  ieee: J. G. De Jaeger-Braet <i>et al.</i>, “The recruitment of the A-type cyclin
    TAM to stress granules is crucial for meiotic fidelity under heat,” <i>Science
    Advances</i>, vol. 11, no. 32. AAAS, p. eadr5694, 2025.
  ista: De Jaeger-Braet JG, Hartmann M, Böttger L, Yang C, Hamada T, Hoth S, Feng
    X, Weingartner M, Schnittger A. 2025. The recruitment of the A-type cyclin TAM
    to stress granules is crucial for meiotic fidelity under heat. Science Advances.
    11(32), eadr5694.
  mla: De Jaeger-Braet, Joke G., et al. “The Recruitment of the A-Type Cyclin TAM
    to Stress Granules Is Crucial for Meiotic Fidelity under Heat.” <i>Science Advances</i>,
    vol. 11, no. 32, AAAS, 2025, p. eadr5694, doi:<a href="https://doi.org/10.1126/sciadv.adr5694">10.1126/sciadv.adr5694</a>.
  short: J.G. De Jaeger-Braet, M. Hartmann, L. Böttger, C. Yang, T. Hamada, S. Hoth,
    X. Feng, M. Weingartner, A. Schnittger, Science Advances 11 (2025) eadr5694.
date_created: 2025-08-24T22:01:30Z
date_published: 2025-08-08T00:00:00Z
date_updated: 2025-09-30T14:24:10Z
day: '08'
ddc:
- '580'
department:
- _id: XiFe
doi: 10.1126/sciadv.adr5694
ec_funded: 1
external_id:
  isi:
  - '001549102600016'
file:
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  date_created: 2025-09-02T07:05:37Z
  date_updated: 2025-09-02T07:05:37Z
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  file_size: 10876817
  relation: main_file
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file_date_updated: 2025-09-02T07:05:37Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
issue: '32'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '08'
oa: 1
oa_version: Published Version
page: eadr5694
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Science Advances
publication_identifier:
  eissn:
  - 2375-2548
publication_status: published
publisher: AAAS
quality_controlled: '1'
scopus_import: '1'
status: public
title: The recruitment of the A-type cyclin TAM to stress granules is crucial for
  meiotic fidelity under heat
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 11
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20221'
abstract:
- lang: eng
  text: We describe the design, synthesis, and single-molecule junction conductance
    of π-electron molecules bearing both radial and linear π-conjugation pathways,
    whereby cycloparaphenylene (CPP) radial cores are π-extended linearly with aryl
    alkyne substituents as models for previously reported CPP-arylene ethynylene conjugated
    polymers. Although radially and linearly conjugated molecules have been studied
    previously in isolation as junction-bridging molecular electronic units, this
    is the first study to examine molecules where both topologies are operative. Our
    results reveal that the presence of radial CPP components within the junction-spanning
    pathway leads to a reduction in the conductance of the backbone compared to model
    linear phenyl substituents. Through tight-binding and DFT-based calculations,
    we attribute this conductance change to intramolecular van der Waals (vdW) interactions
    between the CPP ring and the junction-spanning arylene-ethynylene molecular backbone.
    These interactions induce changes in the dihedral angles of the backbone, leading
    to a reduced overlap of π orbitals within the molecular junction.
acknowledgement: We thank Prof. Volker Blum for useful discussions. We thank the Department
  of Energy Office of Basic Energy Science (DE-SC0019017) and the National Science
  Foundation (NSF-DMR 2241180) for supporting this research. This work was supported
  in part by the Institute of Science and Technology Austria.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Wanzhuo
  full_name: Shi, Wanzhuo
  id: a3010425-87c8-11f0-8106-bec32bea74da
  last_name: Shi
- first_name: Mengjiao
  full_name: Wang, Mengjiao
  last_name: Wang
- first_name: Latha
  full_name: Venkataraman, Latha
  id: 9ebb78a5-cc0d-11ee-8322-fae086a32caf
  last_name: Venkataraman
  orcid: 0000-0002-6957-6089
- first_name: John D.
  full_name: Tovar, John D.
  last_name: Tovar
citation:
  ama: Shi W, Wang M, Venkataraman L, Tovar JD. Single-molecule conductance through
    hybrid radially and linearly π-conjugated macromolecules reveals an unusual intramolecular
    π-interaction. <i>Nano Letters</i>. 2025;25(31):12101-12106. doi:<a href="https://doi.org/10.1021/acs.nanolett.5c03693">10.1021/acs.nanolett.5c03693</a>
  apa: Shi, W., Wang, M., Venkataraman, L., &#38; Tovar, J. D. (2025). Single-molecule
    conductance through hybrid radially and linearly π-conjugated macromolecules reveals
    an unusual intramolecular π-interaction. <i>Nano Letters</i>. American Chemical
    Society. <a href="https://doi.org/10.1021/acs.nanolett.5c03693">https://doi.org/10.1021/acs.nanolett.5c03693</a>
  chicago: Shi, Wanzhuo, Mengjiao Wang, Latha Venkataraman, and John D. Tovar. “Single-Molecule
    Conductance through Hybrid Radially and Linearly π-Conjugated Macromolecules Reveals
    an Unusual Intramolecular π-Interaction.” <i>Nano Letters</i>. American Chemical
    Society, 2025. <a href="https://doi.org/10.1021/acs.nanolett.5c03693">https://doi.org/10.1021/acs.nanolett.5c03693</a>.
  ieee: W. Shi, M. Wang, L. Venkataraman, and J. D. Tovar, “Single-molecule conductance
    through hybrid radially and linearly π-conjugated macromolecules reveals an unusual
    intramolecular π-interaction,” <i>Nano Letters</i>, vol. 25, no. 31. American
    Chemical Society, pp. 12101–12106, 2025.
  ista: Shi W, Wang M, Venkataraman L, Tovar JD. 2025. Single-molecule conductance
    through hybrid radially and linearly π-conjugated macromolecules reveals an unusual
    intramolecular π-interaction. Nano Letters. 25(31), 12101–12106.
  mla: Shi, Wanzhuo, et al. “Single-Molecule Conductance through Hybrid Radially and
    Linearly π-Conjugated Macromolecules Reveals an Unusual Intramolecular π-Interaction.”
    <i>Nano Letters</i>, vol. 25, no. 31, American Chemical Society, 2025, pp. 12101–06,
    doi:<a href="https://doi.org/10.1021/acs.nanolett.5c03693">10.1021/acs.nanolett.5c03693</a>.
  short: W. Shi, M. Wang, L. Venkataraman, J.D. Tovar, Nano Letters 25 (2025) 12101–12106.
corr_author: '1'
date_created: 2025-08-24T22:01:30Z
date_published: 2025-07-24T00:00:00Z
date_updated: 2025-09-30T14:23:39Z
day: '24'
ddc:
- '540'
department:
- _id: LaVe
doi: 10.1021/acs.nanolett.5c03693
external_id:
  isi:
  - '001537145800001'
  pmid:
  - '40707400'
file:
- access_level: open_access
  checksum: bfc167d8904c0c47c3de2a8d0ec699d5
  content_type: application/pdf
  creator: dernst
  date_created: 2025-09-02T06:50:11Z
  date_updated: 2025-09-02T06:50:11Z
  file_id: '20269'
  file_name: 2025_NanoLetters_Shi.pdf
  file_size: 3212706
  relation: main_file
  success: 1
file_date_updated: 2025-09-02T06:50:11Z
has_accepted_license: '1'
intvolume: '        25'
isi: 1
issue: '31'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 12101-12106
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Single-molecule conductance through hybrid radially and linearly π-conjugated
  macromolecules reveals an unusual intramolecular π-interaction
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 25
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '20222'
abstract:
- lang: eng
  text: Let X be a smooth projective hypersurface defined over Q. We provide new bounds
    for rational points of bounded height on X. In particular, we show that if X is
    a smooth projective hypersurface in Pn with n  4 and degree d  50, then the set
    of rational points on X of height bounded by B have cardinality On,d,ε (Bn−2+ε
    ). If X is smooth and has degree d  6, we improve the dimension growth conjecture
    bound. We achieve an analogue result for affine hypersurfaces whose projective
    closure is smooth.
acknowledgement: "While working on this paper, the author was supported by the European
  Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie
  Grant Agreement No. 101034413. The author is very grateful to Tim Browning for suggesting
  the problem and for many useful discussions. We thank the anonymous referees for
  their many helpful comments, which improved the exposition of the paper. We are
  also grateful to Gal Binyamini for their interest in this work and for drawing our
  attention to the aforementioned paper [1].\r\nWe shared an early version of this
  paper with Per Salberger, who mentioned that he announced a new bound for smooth
  threefolds in P4 during a talk in 2019 (see [7] for the abstract). This result has
  not been published."
article_number: rnaf249
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Matteo
  full_name: Verzobio, Matteo
  id: 7aa8f170-131e-11ed-88e1-a9efd01027cb
  last_name: Verzobio
  orcid: 0000-0002-0854-0306
citation:
  ama: Verzobio M. Counting rational points on smooth hypersurfaces with high degree.
    <i>International Mathematics Research Notices</i>. 2025;2025(16). doi:<a href="https://doi.org/10.1093/imrn/rnaf249">10.1093/imrn/rnaf249</a>
  apa: Verzobio, M. (2025). Counting rational points on smooth hypersurfaces with
    high degree. <i>International Mathematics Research Notices</i>. Oxford University
    Press. <a href="https://doi.org/10.1093/imrn/rnaf249">https://doi.org/10.1093/imrn/rnaf249</a>
  chicago: Verzobio, Matteo. “Counting Rational Points on Smooth Hypersurfaces with
    High Degree.” <i>International Mathematics Research Notices</i>. Oxford University
    Press, 2025. <a href="https://doi.org/10.1093/imrn/rnaf249">https://doi.org/10.1093/imrn/rnaf249</a>.
  ieee: M. Verzobio, “Counting rational points on smooth hypersurfaces with high degree,”
    <i>International Mathematics Research Notices</i>, vol. 2025, no. 16. Oxford University
    Press, 2025.
  ista: Verzobio M. 2025. Counting rational points on smooth hypersurfaces with high
    degree. International Mathematics Research Notices. 2025(16), rnaf249.
  mla: Verzobio, Matteo. “Counting Rational Points on Smooth Hypersurfaces with High
    Degree.” <i>International Mathematics Research Notices</i>, vol. 2025, no. 16,
    rnaf249, Oxford University Press, 2025, doi:<a href="https://doi.org/10.1093/imrn/rnaf249">10.1093/imrn/rnaf249</a>.
  short: M. Verzobio, International Mathematics Research Notices 2025 (2025).
corr_author: '1'
date_created: 2025-08-24T22:01:31Z
date_published: 2025-08-01T00:00:00Z
date_updated: 2025-09-30T14:26:34Z
day: '01'
ddc:
- '510'
department:
- _id: TiBr
doi: 10.1093/imrn/rnaf249
ec_funded: 1
external_id:
  arxiv:
  - '2503.19451'
  isi:
  - '001549126000001'
file:
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  checksum: 482ae2be98841ee446cf2bdfcd79f86f
  content_type: application/pdf
  creator: dernst
  date_created: 2025-09-02T07:55:05Z
  date_updated: 2025-09-02T07:55:05Z
  file_id: '20275'
  file_name: 2025_IMRN_Verzobio.pdf
  file_size: 540263
  relation: main_file
  success: 1
file_date_updated: 2025-09-02T07:55:05Z
has_accepted_license: '1'
intvolume: '      2025'
isi: 1
issue: '16'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: International Mathematics Research Notices
publication_identifier:
  eissn:
  - 1687-0247
  issn:
  - 1073-7928
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Counting rational points on smooth hypersurfaces with high degree
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
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    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 2025
year: '2025'
...
