---
OA_place: publisher
OA_type: hybrid
_id: '21217'
abstract:
- lang: eng
text: This study investigates the mechanisms driving clustered convection and the
breakdown of the Intertropical Convergence Zone (ITCZ) over the Western Pacific
Warm Pool using high‐resolution cloud‐resolving simulations and machine‐learning
sensitivity experiments. Results show that ITCZ breakdown episodes, marked by
spatially homogeneous convection and weakened meridional moisture gradients, are
triggered primarily by anomalous moisture advection linked to the equatorial Rossby‐wave
activity. While large‐scale moisture advection regulates the background convective
state strongly, it is the surface and low‐level meridional winds that dominate
transitions between clustered and random convection. Simulations demonstrate that
moisture alone can sustain convective clustering, but breakdown episodes are more
persistent and widespread when coupled with southerly meridional advection. These
findings confirm that wave‐driven advection acts as a regulatory mechanism, periodically
disrupting convective clustering and reshaping the meridional moisture gradient.
This modulation of organization by wave‐induced breakdown events is critical for
understanding tropical convection variability and its implications for the climate
system.
acknowledgement: This article is based on chapter 5 of the PhD thesis of A. Casallas.
The authors thank Graziano Giuliani for discussions on the boundary-condition experiments.
A. Casallas was supported by a PhD fellowship awarded by the Abdus Salam International
Centre for Theoretical Physics. A. Casallas also acknowledges support by the European
Union's Horizon 2020 research and innovation program under the Marie Skłodowska-Curie
grant agreement No 101034413. C. Muller acknowledges funding from the European Research
Council (ERC) under the European Union's Horizon 2020 research and innovation program
(Project CLUSTER, Grant Agreement No. 805041). The authors gratefully acknowledge
Daniel Hernández-Deckers, Lokahith Agasthya, Chris Holloway, and Paolina Cerlini
for their valuable feedback and insightful discussions. They are especially thankful
to Bety Pechacova for suggesting the use of SHAP to complement their analysis. They
also thank the two anonymous reviewers for their constructive comments, which improved
the quality and clarity of the article significantly. Open Access funding provided
by Institute of Science and Technology Austria/KEMÖ.
article_number: e70131
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Alejandro
full_name: Casallas Garcia, Alejandro
id: 92081129-2d75-11ef-a48d-b04dd7a2385a
last_name: Casallas Garcia
orcid: 0000-0002-1988-5035
- first_name: Adrian
full_name: Mark Tompkins, Adrian
last_name: Mark Tompkins
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
citation:
ama: Casallas Garcia A, Mark Tompkins A, Muller CJ. Moisture and wind effects of
Rossby waves on Western Pacific Intertropical Convergence Zone breakdown events.
Quarterly Journal of the Royal Meteorological Society. 2026;152(777). doi:10.1002/qj.70131
apa: Casallas Garcia, A., Mark Tompkins, A., & Muller, C. J. (2026). Moisture
and wind effects of Rossby waves on Western Pacific Intertropical Convergence
Zone breakdown events. Quarterly Journal of the Royal Meteorological Society.
Wiley. https://doi.org/10.1002/qj.70131
chicago: Casallas Garcia, Alejandro, Adrian Mark Tompkins, and Caroline J Muller.
“Moisture and Wind Effects of Rossby Waves on Western Pacific Intertropical Convergence
Zone Breakdown Events.” Quarterly Journal of the Royal Meteorological Society.
Wiley, 2026. https://doi.org/10.1002/qj.70131.
ieee: A. Casallas Garcia, A. Mark Tompkins, and C. J. Muller, “Moisture and wind
effects of Rossby waves on Western Pacific Intertropical Convergence Zone breakdown
events,” Quarterly Journal of the Royal Meteorological Society, vol. 152,
no. 777. Wiley, 2026.
ista: Casallas Garcia A, Mark Tompkins A, Muller CJ. 2026. Moisture and wind effects
of Rossby waves on Western Pacific Intertropical Convergence Zone breakdown events.
Quarterly Journal of the Royal Meteorological Society. 152(777), e70131.
mla: Casallas Garcia, Alejandro, et al. “Moisture and Wind Effects of Rossby Waves
on Western Pacific Intertropical Convergence Zone Breakdown Events.” Quarterly
Journal of the Royal Meteorological Society, vol. 152, no. 777, e70131, Wiley,
2026, doi:10.1002/qj.70131.
short: A. Casallas Garcia, A. Mark Tompkins, C.J. Muller, Quarterly Journal of the
Royal Meteorological Society 152 (2026).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: The data that support the findings of this study are available
from the corresponding author, Alejandro Casallas, upon reasonable request.
date_created: 2026-02-12T10:13:02Z
date_published: 2026-04-01T00:00:00Z
date_updated: 2026-07-27T11:10:50Z
day: '01'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.1002/qj.70131
ec_funded: 1
file:
- access_level: open_access
checksum: 3edd5dee1459dcf62973ae501270be8c
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T11:09:24Z
date_updated: 2026-07-27T11:09:24Z
file_id: '22419'
file_name: 2026_QuarterlyJourRoyalMeteorolSoc_Casallas.pdf
file_size: 11133215
relation: main_file
success: 1
file_date_updated: 2026-07-27T11:09:24Z
has_accepted_license: '1'
intvolume: ' 152'
issue: '777'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
- _id: 629205d8-2b32-11ec-9570-e1356ff73576
call_identifier: H2020
grant_number: '805041'
name: Organization of CLoUdS, and implications of Tropical cyclones and for the
Energetics of the tropics, in current and waRming climate
publication: Quarterly Journal of the Royal Meteorological Society
publication_identifier:
eissn:
- 1477-870X
issn:
- 0035-9009
publication_status: published
publisher: Wiley
quality_controlled: '1'
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Moisture and wind effects of Rossby waves on Western Pacific Intertropical
Convergence Zone breakdown events
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 152
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20986'
abstract:
- lang: eng
text: During complex vocal interactions, different features of acoustic stimuli
are integrated to produce appropriate vocal responses,1 such as copying sounds
during vocal matching behavior in some animals.2,3,4,5,6,7,8,9,10,11,12 However,
little is known about the interplay and possible trade-offs between the different
temporal and spectral acoustic features during these vocal exchanges.2,13,14 Nightingales
can flexibly match the pitch of their tonal “whistle songs” in real time during
counter-singing duels.15,16 Here, we show that the syllable duration of whistle
playbacks could alter the song responses of wild nightingales, causing their whistle
duration distribution to shift toward the presented stimulus duration. When exposed
to whistle playbacks featuring unnatural combinations of pitch and duration, nightingales
demonstrate a flexible trade-off between pitch matching and temporal imitation,
yet they are constrained by their vocal repertoire. They selectively adapted their
vocal responses to approximate these novel stimuli, aligning them with their natural
whistle repertoire. We developed a computational model of nightingale whistle-matching
behavior that revealed a hierarchical organization of acoustic feature production.
During whistle matching, the feature integration process is constrained by the
duration of syllables, and pitch matching follows within this temporal framework,
forcing a trade-off between the two features. Our findings reveal a complex interplay
between the spectral and temporal domains that shapes song-matching behavior.
acknowledgement: 'We would like to thank J. Benichov and N. Hein for their help with
fieldwork; M. Ramadas for helping with the segmentation analysis; T. Eliav, C. Chintaluri,
G. Tkacik, and A. Navas for providing helpful comments to the project and manuscript;
and A. Costalunga for the drawings of nightingales. Funding sources: The Joachim
Herz Stiftung Add-on Fellowships for Interdisciplinary Life Science, awarded to
G.C.; the ERC Consolidator Grant 819603 SYNAPSEEK, awarded to T.P.V.; and DFG Research
Unit 5768–532521431, DFG Research Grant-547921981, DFG SFB 1315–327654276, and the
ERC Starting Grant 757459 MIDNIGHT, awarded to D.V.'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Juan Sebastian
full_name: Calderon Garcia, Juan Sebastian
id: 1271b54b-dbcd-11ea-9d1d-d92da838fe2c
last_name: Calderon Garcia
- first_name: Giacomo
full_name: Costalunga, Giacomo
last_name: Costalunga
- first_name: Tim P
full_name: Vogels, Tim P
id: CB6FF8D2-008F-11EA-8E08-2637E6697425
last_name: Vogels
orcid: 0000-0003-3295-6181
- first_name: Daniela
full_name: Vallentin, Daniela
last_name: Vallentin
citation:
ama: Calderon Garcia JS, Costalunga G, Vogels TP, Vallentin D. Interplay between
syllable duration and pitch during whistle matching in wild nightingales. Current
Biology. 2026;36(3):791-798.e6. doi:10.1016/j.cub.2025.12.025
apa: Calderon Garcia, J. S., Costalunga, G., Vogels, T. P., & Vallentin, D.
(2026). Interplay between syllable duration and pitch during whistle matching
in wild nightingales. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2025.12.025
chicago: Calderon Garcia, Juan Sebastian, Giacomo Costalunga, Tim P Vogels, and
Daniela Vallentin. “Interplay between Syllable Duration and Pitch during Whistle
Matching in Wild Nightingales.” Current Biology. Elsevier, 2026. https://doi.org/10.1016/j.cub.2025.12.025.
ieee: J. S. Calderon Garcia, G. Costalunga, T. P. Vogels, and D. Vallentin, “Interplay
between syllable duration and pitch during whistle matching in wild nightingales,”
Current Biology, vol. 36, no. 3. Elsevier, p. 791–798.e6, 2026.
ista: Calderon Garcia JS, Costalunga G, Vogels TP, Vallentin D. 2026. Interplay
between syllable duration and pitch during whistle matching in wild nightingales.
Current Biology. 36(3), 791–798.e6.
mla: Calderon Garcia, Juan Sebastian, et al. “Interplay between Syllable Duration
and Pitch during Whistle Matching in Wild Nightingales.” Current Biology,
vol. 36, no. 3, Elsevier, 2026, p. 791–798.e6, doi:10.1016/j.cub.2025.12.025.
short: J.S. Calderon Garcia, G. Costalunga, T.P. Vogels, D. Vallentin, Current Biology
36 (2026) 791–798.e6.
das_tickbox: '1'
dataavailabilitystatement: "All data have been deposited at https://github.com/vallentinlab/NG-whistle-durations
and are publicly available as of the date of publication.\r\nAll original code has
been deposited at https://github.com/vallentinlab/NG-whistle-durations and is publicly
available as of the date of publication.\r\nAny additional information required
to reanalyze the data reported in this paper is available from the lead contact
upon request."
date_created: 2026-01-14T12:00:29Z
date_published: 2026-02-02T00:00:00Z
date_updated: 2026-07-27T10:48:35Z
day: '02'
ddc:
- '570'
- '577'
department:
- _id: GradSch
- _id: TiVo
doi: 10.1016/j.cub.2025.12.025
ec_funded: 1
external_id:
pmid:
- '41529680'
file:
- access_level: open_access
checksum: e17c3537193d5ab4886596d1a04f9b0e
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T10:47:55Z
date_updated: 2026-07-27T10:47:55Z
file_id: '22416'
file_name: 2026_CurrentBiology_CalderonGarcia.pdf
file_size: 7120959
relation: main_file
success: 1
file_date_updated: 2026-07-27T10:47:55Z
has_accepted_license: '1'
intvolume: ' 36'
issue: '3'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 791-798.e6
pmid: 1
project:
- _id: 0aacfa84-070f-11eb-9043-d7eb2c709234
call_identifier: H2020
grant_number: '819603'
name: Learning the shape of synaptic plasticity rules for neuronal architectures
and function through machine learning.
publication: Current Biology
publication_identifier:
eissn:
- 1879-0445
issn:
- 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Interplay between syllable duration and pitch during whistle matching in wild
nightingales
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21037'
abstract:
- lang: eng
text: The oxygen reduction reaction (ORR) remains a critical bottleneck in fuel
cells and metal-air batteries due to the lack of highly efficient electrocatalysts.
Here, we report a simple strategy for synthesizing a palladium-based heterostructured
electrocatalyst supported on a carbon nitride matrix (PdH-Pd@CN), which exhibits
remarkable ORR activity with a half-wave potential of 0.91 V and excellent durability
in 0.1 M KOH. Within the heterostructure, hydrogen intercalation expands the Pd
lattice, while interstitial hydrogen doping facilitates charge transfer from Pd
to H owing to their electronegativity difference. These synergistic effects modulate
the electronic structure, thereby enhancing both activity and stability. When
employed in Zn-air batteries, PdH-Pd@CN delivers a maximum power density of 176
mW cm− (Liu et al., 2025) and capacity of 805 mAh g− (Sun et al., 2021) Zn. These
findings demonstrate the strong potential of PdH-Pd@CN as an efficient ORR electrocatalyst
for next-generation metal-air batteries and related energy technologies.
acknowledged_ssus:
- _id: EM-Fac
- _id: NanoFab
acknowledgement: The authors thank the support from the National Natural Science Foundation
of China (NSFC) (Grants No. 22302151) and Natural Science Foundation of Hubei Province
(Grants No. 2024AFB755, 2024AFB267), Key Project of Hubei Provincial Department
of Education Scientific Research Plan (F2023007). This work is supported by funding
from Shandong Provincial Key Laboratory of MonocrystallineSilicon Semiconductor
Materials and Technology (2025KFKT021). This research was supported by the Scientific
Service Units (SSU) of ISTA Austria through resources provided by the Electron Microscopy
Facility (EMF) and the Nanofabrication Facility (NNF). “M.I. and S.H. acknowledge
financial support from ISTA and the Werner Siemens Foundation.”
article_number: '123348'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Changwei
full_name: Shi, Changwei
last_name: Shi
- first_name: Sharona
full_name: Horta, Sharona
id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc
last_name: Horta
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Tanja
full_name: Kallio, Tanja
last_name: Kallio
- first_name: Paulina R.
full_name: Martínez-Alanis, Paulina R.
last_name: Martínez-Alanis
- first_name: Xiang
full_name: Wang, Xiang
last_name: Wang
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: Shi C, Horta S, Ibáñez M, et al. Hydrogen induced palladium-based heterojunction
electrocatalysts to enhance the oxygen reduction reaction performance. Chemical
Engineering Science. 2026;324. doi:10.1016/j.ces.2026.123348
apa: Shi, C., Horta, S., Ibáñez, M., Kallio, T., Martínez-Alanis, P. R., Wang, X.,
& Cabot, A. (2026). Hydrogen induced palladium-based heterojunction electrocatalysts
to enhance the oxygen reduction reaction performance. Chemical Engineering
Science. Elsevier. https://doi.org/10.1016/j.ces.2026.123348
chicago: Shi, Changwei, Sharona Horta, Maria Ibáñez, Tanja Kallio, Paulina R. Martínez-Alanis,
Xiang Wang, and Andreu Cabot. “Hydrogen Induced Palladium-Based Heterojunction
Electrocatalysts to Enhance the Oxygen Reduction Reaction Performance.” Chemical
Engineering Science. Elsevier, 2026. https://doi.org/10.1016/j.ces.2026.123348.
ieee: C. Shi et al., “Hydrogen induced palladium-based heterojunction electrocatalysts
to enhance the oxygen reduction reaction performance,” Chemical Engineering
Science, vol. 324. Elsevier, 2026.
ista: Shi C, Horta S, Ibáñez M, Kallio T, Martínez-Alanis PR, Wang X, Cabot A. 2026.
Hydrogen induced palladium-based heterojunction electrocatalysts to enhance the
oxygen reduction reaction performance. Chemical Engineering Science. 324, 123348.
mla: Shi, Changwei, et al. “Hydrogen Induced Palladium-Based Heterojunction Electrocatalysts
to Enhance the Oxygen Reduction Reaction Performance.” Chemical Engineering
Science, vol. 324, 123348, Elsevier, 2026, doi:10.1016/j.ces.2026.123348.
short: C. Shi, S. Horta, M. Ibáñez, T. Kallio, P.R. Martínez-Alanis, X. Wang, A.
Cabot, Chemical Engineering Science 324 (2026).
das_tickbox: '1'
dataavailabilitystatement: Data will be made available on request.
date_created: 2026-01-25T23:01:39Z
date_published: 2026-04-01T00:00:00Z
date_updated: 2026-07-27T11:03:48Z
day: '01'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1016/j.ces.2026.123348
file:
- access_level: open_access
checksum: c47f1704be452cdefb2b930884693578
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T11:03:37Z
date_updated: 2026-07-27T11:03:37Z
file_id: '22418'
file_name: 2026_ChemicalEngineeringScience_Shi.pdf
file_size: 8345535
relation: main_file
success: 1
file_date_updated: 2026-07-27T11:03:37Z
has_accepted_license: '1'
intvolume: ' 324'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
Semiconductors for Waste Heat Recovery'
publication: Chemical Engineering Science
publication_identifier:
eissn:
- 0009-2509
issn:
- 1873-4405
publication_status: published
publisher: Elsevier
quality_controlled: '1'
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Hydrogen induced palladium-based heterojunction electrocatalysts to enhance
the oxygen reduction reaction performance
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 324
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21006'
abstract:
- lang: eng
text: Modern experimental methods in programmable self-assembly make it possible
to precisely design particle concentrations, shapes and interactions. However,
more physical insight is needed before we can take full advantage of this vast
design space to assemble nanostructures with complex form and function. Here we
show how a substantial part of this design space can be quickly and comprehensively
understood by identifying a class of thermodynamic constraints that act on it.
These thermodynamic constraints form a high-dimensional convex polyhedron that
determines which nanostructures can be assembled at high equilibrium yield and
reveals limitations that govern the coexistence of structures. We validate our
predictions through detailed, quantitative assembly experiments of nanoscale particles
synthesized using DNA origami. Our results uncover physical relationships underpinning
many-component programmable self-assembly in equilibrium and form the basis for
robust inverse design, applicable to various systems from biological protein complexes
to synthetic nanomachines.
acknowledgement: We thank B. Isaac and A. Tiano for their technical support with the
electron microscopy and S. Waitukaitis for helpful comments on the manuscript. The
TEM images were prepared and imaged at the Brandeis Electron Microscopy facility.
This work was supported by the Gesellschaft für Forschungsförderung Niederösterreich
under project FTI23-G-011 (M.C.H. and C.P.G.), the Brandeis University Materials
Research Science and Engineering Center (MRSEC) under grant number NSF DMR-2011846
(T.E.V., D.H. and W.B.R.) and the Smith Family Foundation (W.B.R.). Open access
funding provided by Institute of Science and Technology (IST Austria).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Maximilian
full_name: Hübl, Maximilian
id: 5eb8629e-15b2-11ec-abd3-e6f3e5e01f32
last_name: Hübl
- first_name: Thomas E.
full_name: Videbæk, Thomas E.
last_name: Videbæk
- first_name: Daichi
full_name: Hayakawa, Daichi
last_name: Hayakawa
- first_name: W. Benjamin
full_name: Rogers, W. Benjamin
last_name: Rogers
- first_name: Carl Peter
full_name: Goodrich, Carl Peter
id: EB352CD2-F68A-11E9-89C5-A432E6697425
last_name: Goodrich
orcid: 0000-0002-1307-5074
citation:
ama: Hübl M, Videbæk TE, Hayakawa D, Rogers WB, Goodrich CP. A polyhedral structure
controls programmable self-assembly. Nature Physics. 2026;22:294-301. doi:10.1038/s41567-025-03120-3
apa: Hübl, M., Videbæk, T. E., Hayakawa, D., Rogers, W. B., & Goodrich, C. P.
(2026). A polyhedral structure controls programmable self-assembly. Nature
Physics. Springer Nature. https://doi.org/10.1038/s41567-025-03120-3
chicago: Hübl, Maximilian, Thomas E. Videbæk, Daichi Hayakawa, W. Benjamin Rogers,
and Carl Peter Goodrich. “A Polyhedral Structure Controls Programmable Self-Assembly.”
Nature Physics. Springer Nature, 2026. https://doi.org/10.1038/s41567-025-03120-3.
ieee: M. Hübl, T. E. Videbæk, D. Hayakawa, W. B. Rogers, and C. P. Goodrich, “A
polyhedral structure controls programmable self-assembly,” Nature Physics,
vol. 22. Springer Nature, pp. 294–301, 2026.
ista: Hübl M, Videbæk TE, Hayakawa D, Rogers WB, Goodrich CP. 2026. A polyhedral
structure controls programmable self-assembly. Nature Physics. 22, 294–301.
mla: Hübl, Maximilian, et al. “A Polyhedral Structure Controls Programmable Self-Assembly.”
Nature Physics, vol. 22, Springer Nature, 2026, pp. 294–301, doi:10.1038/s41567-025-03120-3.
short: M. Hübl, T.E. Videbæk, D. Hayakawa, W.B. Rogers, C.P. Goodrich, Nature Physics
22 (2026) 294–301.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: "Design files and folding conditions of DNA origami used
in this work are provided in the repository Nanobase68 and are accessible at https://nanobase.org/structures/247.
All the TEM images and associated experimental data are available via Zenodo at
https://doi.org/10.5281/zenodo.17314727 (ref. 70).\r\nStructure enumeration was
performed using the Roly.jl27,71 (v.0.1.0) package developed by M.C.H. and C.P.G.,
which is available via GitHub at https://github.com/mxhbl/Roly.jl. Polyhedral computation
and linear programming were performed using the freely available Convex.jl72 (v.0.16.4)
package, Polyhedra.jl73 (v.0.7.8) package and cddlib63 (v.0.9.4) library. The example
code reproducing the calculations done on the three rings and reconfigurable squares
is available via GitHub at https://github.com/mxhbl/PolyhedralStructureOfSelfAssembly.
An implementation of the lattice Monte Carlo sampler is available via GitHub at
https://github.com/mxhbl/LatticeSampler. Fitting of the yield curves was achieved
using the freely available Optim.jl74 (v.1.12.0) package."
date_created: 2026-01-20T10:02:19Z
date_published: 2026-02-01T00:00:00Z
date_updated: 2026-07-27T10:59:15Z
day: '01'
ddc:
- '570'
- '540'
department:
- _id: CaGo
- _id: GradSch
doi: 10.1038/s41567-025-03120-3
file:
- access_level: open_access
checksum: f4e3123d5d9dfcd22324e2c2de02e9a2
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T10:57:57Z
date_updated: 2026-07-27T10:57:57Z
file_id: '22417'
file_name: 2026_NaturePhysics_Huebl.pdf
file_size: 2802534
relation: main_file
success: 1
file_date_updated: 2026-07-27T10:57:57Z
has_accepted_license: '1'
intvolume: ' 22'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 294-301
project:
- _id: 8dd93da8-16d5-11f0-9cad-d2c70200d9a5
grant_number: FTI23-G-011
name: Dynamically reconfigurable self-assembly with triangular DNA-origami bricks
publication: Nature Physics
publication_identifier:
eissn:
- 1745-2481
issn:
- 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- description: News on ISTA website
relation: press_release
url: https://ista.ac.at/en/news/behind-natures-blueprints/
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: A polyhedral structure controls programmable self-assembly
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2026'
...
---
OA_type: closed access
_id: '20975'
abstract:
- lang: eng
text: Galaxy clusters are the most massive, gravitationally bound structures in
the Universe. They emerged through hierarchical structure formation of large-scale
dark matter and baryon overdensities. Early galaxy ‘proto-clusters’ are believed
to have substantially contributed to the cosmic star-formation rate density and
served as ‘hotspots’ for the reionization of the intergalactic medium. Our understanding
of the formation of these structures at the earliest cosmic epochs is, however,
limited to sparse observations of their galaxy members or is based on phenomenological
models and cosmological simulations. Here we report the detection of a large and
coherent structure of neutral atomic hydrogen gas (H i) extending from a galaxy
proto-cluster at redshift z = 5.4, one billion years after the Big Bang. The presence
of this H i gas is revealed by strong damped Lyman-α absorption features observed
in several background-galaxy spectra. Although the sight lines overall probe a
large range in H i column densities, NHI = 1020 cm−2 to 1023.5 cm−2, they are
similar across nearby sight lines, demonstrating that they probe the same dense
neutral gas. This observation of a dense large-scale overdensity of cold neutral
gas challenges current cosmological simulations and has strong implications for
the reionization topology of the Universe.
acknowledgement: This work has received funding from the Swiss State Secretariat for
Education, Research and Innovation (Contract No. MB22.00072). The Cosmic Dawn Center
(DAWN) is funded by the Danish National Research Foundation (Grant No. DNRF140).
The data products presented herein were retrieved from the DJA, which is an initiative
of the Cosmic Dawn Center. This work is based on observations made with the NASA/ESA/CSA
JWST. The data were obtained from MAST at the Space Telescope Science Institute,
which is operated by the Association of Universities for Research in Astronomy,
Inc., under NASA contract NAS 5-03127 for JWST. J.S.B. acknowledges support from
the Simons Collaboration on Learning the Universe. J.S.B.’s simulations used resources
from the Cambridge Service for Data Driven Discovery operated by the University
of Cambridge Research Computing Service (www.csd3.cam.ac.uk), provided by Dell EMC
and Intel using tier 2 funding from the Engineering and Physical Sciences Research
Council (Capital Grant No. EP/P020259/1). K.F. gratefully acknowledges support from
the National Science Foundation (Award No. 2006550). M.J.H. is fellow of the Knut
& Alice Wallenberg Foundation. D.S. acknowledges support from the Science and Technology
Facilities Council. U.S.K. was partially funded by the Summer Undergraduate Research
Fellowships programme at Caltech.
article_processing_charge: No
article_type: original
author:
- first_name: Kasper E.
full_name: Heintz, Kasper E.
last_name: Heintz
- first_name: Jake S.
full_name: Bennett, Jake S.
last_name: Bennett
- first_name: Pascal A.
full_name: Oesch, Pascal A.
last_name: Oesch
- first_name: Albert
full_name: Sneppen, Albert
last_name: Sneppen
- first_name: Douglas
full_name: Rennehan, Douglas
last_name: Rennehan
- first_name: Clara L.
full_name: Pollock, Clara L.
last_name: Pollock
- first_name: Joris
full_name: Witstok, Joris
last_name: Witstok
- first_name: Renske
full_name: Smit, Renske
last_name: Smit
- first_name: Simone
full_name: Vejlgaard, Simone
last_name: Vejlgaard
- first_name: Chamilla
full_name: Terp, Chamilla
last_name: Terp
- first_name: Umran S.
full_name: Koca, Umran S.
last_name: Koca
- first_name: Gabriel B.
full_name: Brammer, Gabriel B.
last_name: Brammer
- first_name: Kristian
full_name: Finlator, Kristian
last_name: Finlator
- first_name: Matthew J.
full_name: Hayes, Matthew J.
last_name: Hayes
- first_name: Debora
full_name: Sijacki, Debora
last_name: Sijacki
- first_name: Rohan P.
full_name: Naidu, Rohan P.
last_name: Naidu
- first_name: Jorryt J
full_name: Matthee, Jorryt J
id: 7439a258-f3c0-11ec-9501-9df22fe06720
last_name: Matthee
orcid: 0000-0003-2871-127X
- first_name: Francesco
full_name: Valentino, Francesco
last_name: Valentino
- first_name: Nial R.
full_name: Tanvir, Nial R.
last_name: Tanvir
- first_name: Páll
full_name: Jakobsson, Páll
last_name: Jakobsson
- first_name: Peter
full_name: Laursen, Peter
last_name: Laursen
- first_name: Darach J.
full_name: Watson, Darach J.
last_name: Watson
- first_name: Romeel
full_name: Davé, Romeel
last_name: Davé
- first_name: Laura C.
full_name: Keating, Laura C.
last_name: Keating
- first_name: Alba
full_name: Covelo-Paz, Alba
last_name: Covelo-Paz
citation:
ama: Heintz KE, Bennett JS, Oesch PA, et al. A dense web of neutral gas in a galaxy
proto-cluster post-reionization. Nature Astronomy. 2026;10:448-456. doi:10.1038/s41550-025-02745-x
apa: Heintz, K. E., Bennett, J. S., Oesch, P. A., Sneppen, A., Rennehan, D., Pollock,
C. L., … Covelo-Paz, A. (2026). A dense web of neutral gas in a galaxy proto-cluster
post-reionization. Nature Astronomy. Springer Nature. https://doi.org/10.1038/s41550-025-02745-x
chicago: Heintz, Kasper E., Jake S. Bennett, Pascal A. Oesch, Albert Sneppen, Douglas
Rennehan, Clara L. Pollock, Joris Witstok, et al. “A Dense Web of Neutral Gas
in a Galaxy Proto-Cluster Post-Reionization.” Nature Astronomy. Springer
Nature, 2026. https://doi.org/10.1038/s41550-025-02745-x.
ieee: K. E. Heintz et al., “A dense web of neutral gas in a galaxy proto-cluster
post-reionization,” Nature Astronomy, vol. 10. Springer Nature, pp. 448–456,
2026.
ista: Heintz KE, Bennett JS, Oesch PA, Sneppen A, Rennehan D, Pollock CL, Witstok
J, Smit R, Vejlgaard S, Terp C, Koca US, Brammer GB, Finlator K, Hayes MJ, Sijacki
D, Naidu RP, Matthee JJ, Valentino F, Tanvir NR, Jakobsson P, Laursen P, Watson
DJ, Davé R, Keating LC, Covelo-Paz A. 2026. A dense web of neutral gas in a galaxy
proto-cluster post-reionization. Nature Astronomy. 10, 448–456.
mla: Heintz, Kasper E., et al. “A Dense Web of Neutral Gas in a Galaxy Proto-Cluster
Post-Reionization.” Nature Astronomy, vol. 10, Springer Nature, 2026, pp.
448–56, doi:10.1038/s41550-025-02745-x.
short: K.E. Heintz, J.S. Bennett, P.A. Oesch, A. Sneppen, D. Rennehan, C.L. Pollock,
J. Witstok, R. Smit, S. Vejlgaard, C. Terp, U.S. Koca, G.B. Brammer, K. Finlator,
M.J. Hayes, D. Sijacki, R.P. Naidu, J.J. Matthee, F. Valentino, N.R. Tanvir, P.
Jakobsson, P. Laursen, D.J. Watson, R. Davé, L.C. Keating, A. Covelo-Paz, Nature
Astronomy 10 (2026) 448–456.
das_tickbox: '1'
dataavailabilitystatement: "The JWST imaging and spectroscopic data are publicly available
via the JWST MAST archive at https://mast.stsci.edu. The relevant programme and
source IDs for each target are provided in Table 1. The reduced spectroscopic data
are all available via DJA at https://dawn-cph.github.io/dja/. Version 3 was used
for this work.\r\nThe data have been processed using the following public software
codes: grizli v.1.9.11(60) and MsaExp v.0.6.17(32)."
date_created: 2026-01-11T23:01:34Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-07-27T10:42:02Z
day: '01'
department:
- _id: JoMa
doi: 10.1038/s41550-025-02745-x
intvolume: ' 10'
language:
- iso: eng
month: '03'
oa_version: None
page: 448-456
publication: Nature Astronomy
publication_identifier:
eissn:
- 2397-3366
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: A dense web of neutral gas in a galaxy proto-cluster post-reionization
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2026'
...
---
OA_type: closed access
_id: '21036'
abstract:
- lang: eng
text: 'Forests under livestock grazing sustain important ecosystem services but
face potential trade-offs between production and ecological integrity. While the
effects of grazing on individual forest attributes are well documented, their
integrated consequences remain poorly understood, particularly in temperate forest
ecosystems. We evaluated the combined influence of livestock grazing intensity
and canopy cover on individual attributes and ecosystem multifunctionality in
native Nothofagus forests of Tierra del Fuego, Argentina. Across eight ranches
spanning two agroecological regions (Ecotone and Mountain Range), we quantified
forest regeneration, understorey richness and biomass, and soil properties, integrating
them into a multifunctionality index. Using generalized linear mixed models, we
found strong context-dependence: in the Mountain Range, higher grazing intensity
reduced seedling and sapling density, organic matter content, coarse woody debris,
and overall multifunctionality. In the Ecotone, these effects of livestock use
intensity were attenuated, and canopy cover diminished sapling density and multifunctionality,
but moderate cover enhanced understorey. Our results extend multifunctionality
research from grazed grasslands to grazed temperate forests and show that ecological
responses and trade-offs vary across landscape units. We conclude that the Mountain
Range is more vulnerable to grazing, requiring stricter management, whereas the
Ecotone retains greater capacity to sustain multifunctionality under controlled
livestock use intensity. These findings underscore the importance of region-specific
silvopastoral strategies that reconcile food production with forest conservation
in southern Patagonia and comparable temperate forest landscapes worldwide.'
acknowledgement: We would like to thank Guillermo Ortiz (CADIC-CONICET) for his invaluable
support in the field and lab work. We are extremely grateful to the ranchers for
kindly allowing us access to their fields. Funding for this work was provided by
the Argentine National Scientific and Technical Research Council (CONICET) and the
National Agency for Scientific Promotion through project PICT 2019–675. PR was also
granted the Mobility Scholarship Program 2025 between Andalusian and Ibero-American
Universities (AUIP). VCA is co-supported by the Community of Madrid under the 2024
call for the ‘César Nombela’ research talent attraction programme (2024-T1/ECO-31335).
article_number: '110219'
article_processing_charge: No
article_type: original
author:
- first_name: Paula
full_name: Rodríguez, Paula
last_name: Rodríguez
- first_name: Verónica
full_name: Cruz Alonso, Verónica
last_name: Cruz Alonso
- first_name: Silvina
full_name: Romano, Silvina
last_name: Romano
- first_name: Gimena
full_name: Bustamante, Gimena
last_name: Bustamante
- first_name: Rosina Matilde
full_name: Soler Schaller, Rosina Matilde
id: 9e668447-8c32-11ed-b0c7-8dc2d7b80803
last_name: Soler Schaller
citation:
ama: Rodríguez P, Cruz Alonso V, Romano S, Bustamante G, Soler Schaller RM. Context-dependent
effects of livestock grazing on forest attributes and ecosystem multifunctionality
in Nothofagus forests. Agriculture, Ecosystems and Environment. 2026;400.
doi:10.1016/j.agee.2026.110219
apa: Rodríguez, P., Cruz Alonso, V., Romano, S., Bustamante, G., & Soler Schaller,
R. M. (2026). Context-dependent effects of livestock grazing on forest attributes
and ecosystem multifunctionality in Nothofagus forests. Agriculture, Ecosystems
and Environment. Elsevier. https://doi.org/10.1016/j.agee.2026.110219
chicago: Rodríguez, Paula, Verónica Cruz Alonso, Silvina Romano, Gimena Bustamante,
and Rosina Matilde Soler Schaller. “Context-Dependent Effects of Livestock Grazing
on Forest Attributes and Ecosystem Multifunctionality in Nothofagus Forests.”
Agriculture, Ecosystems and Environment. Elsevier, 2026. https://doi.org/10.1016/j.agee.2026.110219.
ieee: P. Rodríguez, V. Cruz Alonso, S. Romano, G. Bustamante, and R. M. Soler Schaller,
“Context-dependent effects of livestock grazing on forest attributes and ecosystem
multifunctionality in Nothofagus forests,” Agriculture, Ecosystems and Environment,
vol. 400. Elsevier, 2026.
ista: Rodríguez P, Cruz Alonso V, Romano S, Bustamante G, Soler Schaller RM. 2026.
Context-dependent effects of livestock grazing on forest attributes and ecosystem
multifunctionality in Nothofagus forests. Agriculture, Ecosystems and Environment.
400, 110219.
mla: Rodríguez, Paula, et al. “Context-Dependent Effects of Livestock Grazing on
Forest Attributes and Ecosystem Multifunctionality in Nothofagus Forests.” Agriculture,
Ecosystems and Environment, vol. 400, 110219, Elsevier, 2026, doi:10.1016/j.agee.2026.110219.
short: P. Rodríguez, V. Cruz Alonso, S. Romano, G. Bustamante, R.M. Soler Schaller,
Agriculture, Ecosystems and Environment 400 (2026).
das_tickbox: '1'
dataavailabilitystatement: The authors do not have permission to share data.
date_created: 2026-01-25T23:01:38Z
date_published: 2026-04-15T00:00:00Z
date_updated: 2026-07-27T11:01:30Z
day: '15'
department:
- _id: NiBa
doi: 10.1016/j.agee.2026.110219
intvolume: ' 400'
language:
- iso: eng
month: '04'
oa_version: None
publication: Agriculture, Ecosystems and Environment
publication_identifier:
issn:
- 0167-8809
publication_status: published
publisher: Elsevier
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Context-dependent effects of livestock grazing on forest attributes and ecosystem
multifunctionality in Nothofagus forests
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 400
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21132'
abstract:
- lang: eng
text: We unify the variational hypocoercivity framework established by D. Albritton,
S. Armstrong, J.-C. Mourrat, and M. Novack [2], with the notion of second-order
lifts of reversible diffusion processes, recently introduced by A. Eberle and
the second author [30]. We give an abstract, yet fully constructive, presentation
of the theory, so that it can be applied to a large class of linear kinetic equations.
As this hypocoercivity technique does not twist the reference norm, we can recover
accurate and sharp convergence rates in various models. Among those, adaptive
Langevin dynamics (ALD) is discussed in full detail and we show that for near-quadratic
potentials, with suitable choices of parameters, it is a near-optimal second-order
lift of the overdamped Langevin dynamics. As a further consequence, we observe
that the Generalised Langevin Equation (GLE) is also a second-order lift, as the
standard (kinetic) Langevin dynamics are, of the overdamped Langevin dynamics.
Then, convergence of (GLE) cannot exceed ballistic speed, i.e. the square root
of the rate of the overdamped regime. We illustrate this phenomenon with explicit
computations in a benchmark Gaussian case.
acknowledgement: "We would like to thank Andreas Eberle and Gabriel Stoltz for many
helpful discussions. GB\r\nhas received funding from the European Union Horizon
2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement
No 101034413. FL wurde gefördert durch die Deutsche Forschungsgemeinschaft (DFG)
im Rahmen der Exzellenzstrategie des Bundes und der Länder – GZ2047/1, Projekt-ID
390685813. LW is supported by the National Science Foundation via grant DMS-2407166.
He is also indebted to the Mathematical Sciences department at Carnegie Mellon University
for partly supporting his visit to Europe in July 2024. Part of this work was completed
when GB and LW were visiting the Institute for Applied Mathematics in Bonn. GB and
LW would like to thank IAM for their hospitality."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Giovanni
full_name: Brigati, Giovanni
id: 63ff57e8-1fbb-11ee-88f2-f558ffc59cf1
last_name: Brigati
- first_name: Francis
full_name: Lörler, Francis
last_name: Lörler
- first_name: Lihan
full_name: Wang, Lihan
last_name: Wang
citation:
ama: Brigati G, Lörler F, Wang L. Hypocoercivity meets lifts. Kinetic and Related
Models. 2026;20:34-55. doi:10.3934/krm.2025020
apa: Brigati, G., Lörler, F., & Wang, L. (2026). Hypocoercivity meets lifts.
Kinetic and Related Models. American Institute of Mathematical Sciences.
https://doi.org/10.3934/krm.2025020
chicago: Brigati, Giovanni, Francis Lörler, and Lihan Wang. “Hypocoercivity Meets
Lifts.” Kinetic and Related Models. American Institute of Mathematical
Sciences, 2026. https://doi.org/10.3934/krm.2025020.
ieee: G. Brigati, F. Lörler, and L. Wang, “Hypocoercivity meets lifts,” Kinetic
and Related Models, vol. 20. American Institute of Mathematical Sciences,
pp. 34–55, 2026.
ista: Brigati G, Lörler F, Wang L. 2026. Hypocoercivity meets lifts. Kinetic and
Related Models. 20, 34–55.
mla: Brigati, Giovanni, et al. “Hypocoercivity Meets Lifts.” Kinetic and Related
Models, vol. 20, American Institute of Mathematical Sciences, 2026, pp. 34–55,
doi:10.3934/krm.2025020.
short: G. Brigati, F. Lörler, L. Wang, Kinetic and Related Models 20 (2026) 34–55.
das_tickbox: '1'
date_created: 2026-02-01T23:01:43Z
date_published: 2026-04-01T00:00:00Z
date_updated: 2026-07-27T11:06:19Z
day: '01'
department:
- _id: JaMa
doi: 10.3934/krm.2025020
ec_funded: 1
external_id:
arxiv:
- '2412.10890'
intvolume: ' 20'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2412.10890
month: '04'
oa: 1
oa_version: Preprint
page: 34-55
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Kinetic and Related Models
publication_identifier:
eissn:
- 1937-5077
issn:
- 1937-5093
publication_status: published
publisher: American Institute of Mathematical Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Hypocoercivity meets lifts
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 20
year: '2026'
...
---
OA_type: closed access
_id: '20818'
abstract:
- lang: eng
text: "This study demonstrates that Marchantia non-canonical PINs are predominantly
localized to the plasma membrane, with MpPINX and MpPINW exhibiting asymmetric
distribution.\r\nA newly identified miniW domain within the MpPINW hydrophilic
loop governs subcellular trafficking and asymmetric PM localization of non-canonical
PINs in Marchantia."
acknowledgement: The authors sincerely thank Dr. Shutang Tan for experimental support
and Dr. Barbara Kloeckener Gruissem for critical reading and constructive advice
on the manuscript. This study was supported by the European Research Council Advanced
Grant (ETAP-742985 to H.T. and J.F.), by the Ministry of Science and Technology
(grant 112-2636-B-005-001- to K.-J.L.), and by the Ministry of Education (grant
MOE-109-YSFAG-0006-001-P1 to K.-J.L.).
article_processing_charge: No
article_type: comment
author:
- first_name: Han
full_name: Tang, Han
id: 19BDF720-25A0-11EA-AC6E-928F3DDC885E
last_name: Tang
orcid: 0000-0001-6152-6637
- first_name: Adrijana
full_name: Smoljan, Adrijana
id: cced8a85-223e-11ed-af04-b0596c55053b
last_name: Smoljan
- first_name: Minxia
full_name: Zou, Minxia
id: 5c243f41-03f3-11ec-841c-96faf48a7ef9
last_name: Zou
- first_name: Yuzhou
full_name: Zhang, Yuzhou
id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
last_name: Zhang
orcid: 0000-0003-2627-6956
- first_name: Kuan Ju
full_name: Lu, Kuan Ju
last_name: Lu
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Tang H, Smoljan A, Zou M, Zhang Y, Lu KJ, Friml J. The miniW domain directs
polarized membrane localization of non-canonical PINs in Marchantia polymorpha.
Plant Cell and Environment. 2026;49(3):1505-1508. doi:10.1111/pce.70295
apa: Tang, H., Smoljan, A., Zou, M., Zhang, Y., Lu, K. J., & Friml, J. (2026).
The miniW domain directs polarized membrane localization of non-canonical PINs
in Marchantia polymorpha. Plant Cell and Environment. Wiley. https://doi.org/10.1111/pce.70295
chicago: Tang, Han, Adrijana Smoljan, Minxia Zou, Yuzhou Zhang, Kuan Ju Lu, and
Jiří Friml. “The MiniW Domain Directs Polarized Membrane Localization of Non-Canonical
PINs in Marchantia Polymorpha.” Plant Cell and Environment. Wiley, 2026.
https://doi.org/10.1111/pce.70295.
ieee: H. Tang, A. Smoljan, M. Zou, Y. Zhang, K. J. Lu, and J. Friml, “The miniW
domain directs polarized membrane localization of non-canonical PINs in Marchantia
polymorpha,” Plant Cell and Environment, vol. 49, no. 3. Wiley, pp. 1505–1508,
2026.
ista: Tang H, Smoljan A, Zou M, Zhang Y, Lu KJ, Friml J. 2026. The miniW domain
directs polarized membrane localization of non-canonical PINs in Marchantia polymorpha.
Plant Cell and Environment. 49(3), 1505–1508.
mla: Tang, Han, et al. “The MiniW Domain Directs Polarized Membrane Localization
of Non-Canonical PINs in Marchantia Polymorpha.” Plant Cell and Environment,
vol. 49, no. 3, Wiley, 2026, pp. 1505–08, doi:10.1111/pce.70295.
short: H. Tang, A. Smoljan, M. Zou, Y. Zhang, K.J. Lu, J. Friml, Plant Cell and
Environment 49 (2026) 1505–1508.
das_tickbox: '1'
dataavailabilitystatement: The data that support the findings of this study are available
from the corresponding author upon reasonable request.
date_created: 2025-12-14T23:02:05Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-07-27T10:27:47Z
day: '01'
department:
- _id: JiFr
doi: 10.1111/pce.70295
ec_funded: 1
external_id:
pmid:
- '41340422'
intvolume: ' 49'
issue: '3'
language:
- iso: eng
month: '03'
oa_version: None
page: 1505-1508
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
publication: Plant Cell and Environment
publication_identifier:
eissn:
- 1365-3040
issn:
- 0140-7791
publication_status: published
publisher: Wiley
quality_controlled: '1'
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: yes
title: The miniW domain directs polarized membrane localization of non-canonical PINs
in Marchantia polymorpha
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 49
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21453'
abstract:
- lang: eng
text: "1. Collective behaviours are a fascinating study area due to the emergent
properties that can only arise in groups of interacting individuals. However,
their quantitative study is often impaired by technical difficulties, creating
either low-quality and sparse data or impractical data amounts, particularly when
capturing large groups over long periods of time. Common challenges arise from
recording group members with as little obscuring of each other as possible, as
well as in generating manageable data amounts with as high as possible information
content.\r\n2. We here provide a multicomponent system that allows to record,
analyse and simulate the long-term spatiotemporal activity patterns of insect
collectives, especially ant colonies. Our Ant Observing System, ALTAA, comprises
a flat-nest design to prevent occlusion of individuals, a recording system running
on a low-power single-board-computer, and a set of computer programmes performing
quantitative analyses to guide the formation and validation of rules underlying
the observed collective patterns. Our system is scalable in that it allows parallel,
continuous observation of a high number of colonies using low memory space, with
colony maintenance requirements (e.g. feeding, nest humidity) being achieved at
lowest possible disturbance by the experimenter.\r\n3. We showcase the potential
of the system in a study using the black garden ant, Lasius niger, where we analyse
the spatiotemporal effects of different group sizes (1, 6, 10 ants), brood (larvae)
presence or absence, as well as of different nest geometries, over a period of
1 week. We show that the ants' motion activity has a weak periodicity in the range
of 20 to 120 min promoted by larval presence, and that ants are spatially attracted
to their larvae, the water source and the walls. We also find that the presence
of nestmates lowers an individual ant's motion activity. Observed data are compared
to simulations of the temporal activity of the ants.\r\n4. ALTAA provides a powerful
toolkit to quantify and interpret spatial and temporal collective activity patterns
in (social) insects over extended periods."
acknowledgement: We thank Harikrishnan Rajendran for discussion. This project has
received funding from the European Research Council (ERC) under the European Union's
Horizon 2020 Research and Innovation Programme (grant agreement No. 771402; EPIDEMICSonCHIP
to S.C.). Open Access funding provided by Institute of Science and Technology Austria/KEMÖ.
article_processing_charge: Yes
article_type: original
author:
- first_name: Jinook
full_name: Oh, Jinook
id: 403169A4-080F-11EA-9993-BF3F3DDC885E
last_name: Oh
orcid: 0000-0001-7425-2372
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
biorxivid: 1
citation:
ama: 'Oh J, Cremer S. ALTAA: Analysis of long-term activity patterns in ant colonies.
Methods in Ecology and Evolution. 2026;17(4):1218-1234. doi:10.1111/2041-210x.70277'
apa: 'Oh, J., & Cremer, S. (2026). ALTAA: Analysis of long-term activity patterns
in ant colonies. Methods in Ecology and Evolution. Wiley. https://doi.org/10.1111/2041-210x.70277'
chicago: 'Oh, Jinook, and Sylvia Cremer. “ALTAA: Analysis of Long-Term Activity
Patterns in Ant Colonies.” Methods in Ecology and Evolution. Wiley, 2026.
https://doi.org/10.1111/2041-210x.70277.'
ieee: 'J. Oh and S. Cremer, “ALTAA: Analysis of long-term activity patterns in ant
colonies,” Methods in Ecology and Evolution, vol. 17, no. 4. Wiley, pp.
1218–1234, 2026.'
ista: 'Oh J, Cremer S. 2026. ALTAA: Analysis of long-term activity patterns in ant
colonies. Methods in Ecology and Evolution. 17(4), 1218–1234.'
mla: 'Oh, Jinook, and Sylvia Cremer. “ALTAA: Analysis of Long-Term Activity Patterns
in Ant Colonies.” Methods in Ecology and Evolution, vol. 17, no. 4, Wiley,
2026, pp. 1218–34, doi:10.1111/2041-210x.70277.'
short: J. Oh, S. Cremer, Methods in Ecology and Evolution 17 (2026) 1218–1234.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: Data available via https://doi.org/10.5281/zenodo.16893940
(Oh, 2025), and the code is available at Github, https://github.com/jinook0707/CremerGroupApp.
date_created: 2026-03-15T23:01:36Z
date_published: 2026-04-01T00:00:00Z
date_updated: 2026-07-27T11:31:10Z
day: '01'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.1111/2041-210x.70277
ec_funded: 1
external_id:
biorxivid:
- 10.1101/2025.08.11.669637
file:
- access_level: open_access
checksum: 5f2a44daa57f757c8d5226bb3d80680b
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T11:30:53Z
date_updated: 2026-07-27T11:30:53Z
file_id: '22422'
file_name: 2026_MethodsEcologyEvolution_Oh.pdf
file_size: 7154332
relation: main_file
success: 1
file_date_updated: 2026-07-27T11:30:53Z
has_accepted_license: '1'
intvolume: ' 17'
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1218-1234
project:
- _id: 2649B4DE-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '771402'
name: Epidemics in ant societies on a chip
publication: Methods in Ecology and Evolution
publication_identifier:
eissn:
- 2041-210X
publication_status: published
publisher: Wiley
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: 'ALTAA: Analysis of long-term activity patterns in ant colonies'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21295'
abstract:
- lang: eng
text: 'Depending on the type of flow, the transition to turbulence can take one
of two forms: either turbulence arises from a sequence of instabilities or from
the spatial proliferation of transiently chaotic domains, a process analogous
to directed percolation. The former scenario is commonly referred to as a supercritical
transition and frequently encountered in flows destabilized by body forces, whereas
the latter subcritical transition is common in shear flows. Both cases are inherently
continuous in a sense that the transformation from ordered laminar to fully turbulent
fluid motion is only accomplished gradually with flow speed. Here we show that
these established transition types do not account for the more general setting
of shear flows subject to body forces. The combination of the two continuous scenarios
leads to the attenuation of spatial coupling; with increasing forcing amplitude,
the transition becomes increasingly sharp and eventually discontinuous. We argue
that the suppression of laminar–turbulent coexistence and the approach towards
a discontinuous phase transition potentially apply to a broad range of situations
including flows subject to, for example, buoyancy, centrifugal or electromagnetic
forces.'
acknowledgement: The work was supported by the Simons Foundation (grant number 662960,
to B.H.). Open access funding provided by Institute of Science and Technology (IST
Austria).
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Bowen
full_name: Yang, Bowen
id: 71b6ff4b-15b2-11ec-abd3-aef6b028cf7e
last_name: Yang
orcid: 0000-0002-4843-6853
- first_name: Yi
full_name: Zhuang, Yi
id: 3677B57C-F248-11E8-B48F-1D18A9856A87
last_name: Zhuang
- first_name: Gökhan
full_name: Yalniz, Gökhan
id: 66E74FA2-D8BF-11E9-8249-8DE2E5697425
last_name: Yalniz
orcid: 0000-0002-8490-9312
- first_name: Mukund
full_name: Vasudevan, Mukund
id: 3C5A959A-F248-11E8-B48F-1D18A9856A87
last_name: Vasudevan
- first_name: Elena
full_name: Marensi, Elena
id: 0BE7553A-1004-11EA-B805-18983DDC885E
last_name: Marensi
orcid: 0000-0001-7173-4923
- first_name: Björn
full_name: Hof, Björn
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
citation:
ama: Yang B, Zhuang Y, Yalniz G, Vasudevan M, Marensi E, Hof B. Discontinuous transition
to shear flow turbulence. Nature Physics. 2026;22:424-429. doi:10.1038/s41567-025-03166-3
apa: Yang, B., Zhuang, Y., Yalniz, G., Vasudevan, M., Marensi, E., & Hof, B.
(2026). Discontinuous transition to shear flow turbulence. Nature Physics.
Springer Nature. https://doi.org/10.1038/s41567-025-03166-3
chicago: Yang, Bowen, Yi Zhuang, Gökhan Yalniz, Mukund Vasudevan, Elena Marensi,
and Björn Hof. “Discontinuous Transition to Shear Flow Turbulence.” Nature
Physics. Springer Nature, 2026. https://doi.org/10.1038/s41567-025-03166-3.
ieee: B. Yang, Y. Zhuang, G. Yalniz, M. Vasudevan, E. Marensi, and B. Hof, “Discontinuous
transition to shear flow turbulence,” Nature Physics, vol. 22. Springer
Nature, pp. 424–429, 2026.
ista: Yang B, Zhuang Y, Yalniz G, Vasudevan M, Marensi E, Hof B. 2026. Discontinuous
transition to shear flow turbulence. Nature Physics. 22, 424–429.
mla: Yang, Bowen, et al. “Discontinuous Transition to Shear Flow Turbulence.” Nature
Physics, vol. 22, Springer Nature, 2026, pp. 424–29, doi:10.1038/s41567-025-03166-3.
short: B. Yang, Y. Zhuang, G. Yalniz, M. Vasudevan, E. Marensi, B. Hof, Nature Physics
22 (2026) 424–429.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: Source data are available via Zenodo at https://doi.org/10.5281/zenodo.17514317
(ref. 51). The numerical simulations were carried out using the open-source codes
openpipeflow41 and nsPipeflow45.
date_created: 2026-02-17T11:38:41Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-07-27T11:13:48Z
day: '01'
ddc:
- '532'
department:
- _id: GradSch
- _id: BjHo
doi: 10.1038/s41567-025-03166-3
external_id:
arxiv:
- '2311.11474'
file:
- access_level: open_access
checksum: 0636abba74896c467a7237411fa2369b
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T11:12:46Z
date_updated: 2026-07-27T11:12:46Z
file_id: '22420'
file_name: 2026_NaturePhysics_Yang.pdf
file_size: 5152735
relation: main_file
success: 1
file_date_updated: 2026-07-27T11:12:46Z
has_accepted_license: '1'
intvolume: ' 22'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 424-429
project:
- _id: 238598C6-32DE-11EA-91FC-C7463DDC885E
grant_number: '662960'
name: Revisiting the Turbulence Problem Using Statistical Mechanics
publication: Nature Physics
publication_identifier:
eissn:
- 1745-2481
issn:
- 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Discontinuous transition to shear flow turbulence
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21483'
abstract:
- lang: eng
text: 'Embryogenesis in the model plant Arabidopsis thaliana provides a framework
for understanding how cell polarity and patterning coordinate with hormonal signalling
to establish the plant body plan. Following fertilisation, the zygote divides
asymmetrically to generate apical and basal lineages, establishing the apical–basal
axis that defines future shoot and root poles. Genetic and molecular analyses
of classical mutants including gnom, monopteros (mp), bodenlos (bdl) and topless
revealed that localised auxin biosynthesis, directional transport and downstream
transcriptional responses are central to apical–basal axis establishment and organ
initiation. The main components of this regulation are polarly localised PIN auxin
transporters and downstream modules involving MONOPTEROS and WUSCHEL-RELATED HOMEOBOX
transcription factors. Advances in microscopy have transformed the study of Arabidopsis
embryogenesis: fluorescence-compatible clearing reagents and three-dimensional
reconstructions now permit quantitative analyses of cell geometry, division orientation,
and cytoskeletal dynamics. Live ovule imaging setups with confocal laser scanning
and multiphoton microscopes enable real-time observation of embryo development,
while laser-assisted cell ablation can be used to probe cell-to-cell communication
and fate plasticity. Together, these methodological breakthroughs position Arabidopsis
embryos as a prime model for dissecting the chemical and biophysical cues that
shape plant development.'
acknowledgement: The authors would like to acknowledge the many colleagues whose valuable
contributions to the field could not be included in this review due to space limitations
and reference constraints. Open Access funding provided by Institute of Science
and Technology Austria/KEMÖ.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: David
full_name: Babic, David
id: db566d23-f6e0-11ea-865d-e6f270e968e7
last_name: Babic
- first_name: Milan
full_name: Zupunski, Milan
id: f6a21fce-573e-11f0-a150-a8d96aee2539
last_name: Zupunski
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Babic D, Zupunski M, Friml J. Imaging and genetic toolbox to study Arabidopsis
embryogenesis. New Phytologist. 2026;250(3):1483-1491. doi:10.1111/nph.71072
apa: Babic, D., Zupunski, M., & Friml, J. (2026). Imaging and genetic toolbox
to study Arabidopsis embryogenesis. New Phytologist. Wiley. https://doi.org/10.1111/nph.71072
chicago: Babic, David, Milan Zupunski, and Jiří Friml. “Imaging and Genetic Toolbox
to Study Arabidopsis Embryogenesis.” New Phytologist. Wiley, 2026. https://doi.org/10.1111/nph.71072.
ieee: D. Babic, M. Zupunski, and J. Friml, “Imaging and genetic toolbox to study
Arabidopsis embryogenesis,” New Phytologist, vol. 250, no. 3. Wiley, pp.
1483–1491, 2026.
ista: Babic D, Zupunski M, Friml J. 2026. Imaging and genetic toolbox to study Arabidopsis
embryogenesis. New Phytologist. 250(3), 1483–1491.
mla: Babic, David, et al. “Imaging and Genetic Toolbox to Study Arabidopsis Embryogenesis.”
New Phytologist, vol. 250, no. 3, Wiley, 2026, pp. 1483–91, doi:10.1111/nph.71072.
short: D. Babic, M. Zupunski, J. Friml, New Phytologist 250 (2026) 1483–1491.
corr_author: '1'
das_tickbox: '0'
date_created: 2026-03-23T14:59:06Z
date_published: 2026-05-01T00:00:00Z
date_updated: 2026-07-27T11:47:24Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
- _id: GradSch
doi: 10.1111/nph.71072
external_id:
pmid:
- '41808651'
file:
- access_level: open_access
checksum: 67513dde983631bed9613fdaadbbee06
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T11:46:25Z
date_updated: 2026-07-27T11:46:25Z
file_id: '22424'
file_name: 2026_NewPhytologist_Babic.pdf
file_size: 1708392
relation: main_file
success: 1
file_date_updated: 2026-07-27T11:46:25Z
has_accepted_license: '1'
intvolume: ' 250'
issue: '3'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 1483-1491
pmid: 1
publication: New Phytologist
publication_identifier:
eissn:
- 1469-8137
issn:
- 0028-646X
publication_status: published
publisher: Wiley
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Imaging and genetic toolbox to study Arabidopsis embryogenesis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 250
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21484'
abstract:
- lang: eng
text: An individual's phenotype reflects a complex interplay of the direct effects
of their DNA, epigenetic modifications of their DNA induced by their parents,
and indirect effects of their parents' DNA. Here, we derive how the genetic variance
within a population is changed under the influence of indirect maternal, paternal
and parent-of-origin effects under random mating. We also consider indirect effects
of a sibling, in particular how the genetic variance is altered when looking at
the phenotypic difference between two siblings. The calculations are then extended
to include assortative mating (AM), which alters the variance by inducing increased
homozygosity and correlations within and across loci. AM likely leads to covariance
of parental genetic effects, a measure of the similarity of parents in the indirect
effects they have on their children. We propose that this assortment for parental
characteristics, where biological parents create similar environments for their
children, can create shared parental effects across traits and the appearance
of cross-trait AM. Our theory shows how the resemblance among relatives increases
under both AM, indirect and parent-of-origin effects. When our model is used to
predict correlations among relatives in human height, we find that explaining
the patterns observed in real data requires both indirect genetic effects and
assortative mating. The degree to which direct, indirect and epigenetic effects
shape the phenotypic variance of complex traits remains an open question that
requires large-scale family data to be resolved.
acknowledgement: We thank members of the Medical Genomics group at ISTA for their
comments, which improved this manuscript. This work was funded by an SNSF Eccellenza
Grant to MRR (PCEGP3-181181), and by core funding from the Institute of Science
and Technology Austria.
article_number: iyag042
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Ilse
full_name: Krätschmer, Ilse
id: 30d4014e-7753-11eb-b44b-db6d61112e73
last_name: Krätschmer
orcid: 0000-0002-5636-9259
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
citation:
ama: Krätschmer I, Robinson MR. A quantitative genetic model for indirect genetic
effects and genomic imprinting under random and assortative mating. Genetics.
2026;232(4). doi:10.1093/genetics/iyag042
apa: Krätschmer, I., & Robinson, M. R. (2026). A quantitative genetic model
for indirect genetic effects and genomic imprinting under random and assortative
mating. Genetics. Oxford University Press. https://doi.org/10.1093/genetics/iyag042
chicago: Krätschmer, Ilse, and Matthew Richard Robinson. “A Quantitative Genetic
Model for Indirect Genetic Effects and Genomic Imprinting under Random and Assortative
Mating.” Genetics. Oxford University Press, 2026. https://doi.org/10.1093/genetics/iyag042.
ieee: I. Krätschmer and M. R. Robinson, “A quantitative genetic model for indirect
genetic effects and genomic imprinting under random and assortative mating,” Genetics,
vol. 232, no. 4. Oxford University Press, 2026.
ista: Krätschmer I, Robinson MR. 2026. A quantitative genetic model for indirect
genetic effects and genomic imprinting under random and assortative mating. Genetics.
232(4), iyag042.
mla: Krätschmer, Ilse, and Matthew Richard Robinson. “A Quantitative Genetic Model
for Indirect Genetic Effects and Genomic Imprinting under Random and Assortative
Mating.” Genetics, vol. 232, no. 4, iyag042, Oxford University Press, 2026,
doi:10.1093/genetics/iyag042.
short: I. Krätschmer, M.R. Robinson, Genetics 232 (2026).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: "The code used to simulate data can be found at https://github.\r\ncom/medical-genomics-group/familyMC.
Simulations are based\r\non genotype data from 1000 Genomes Project downloaded from\r\nhttps://ftp.1000genomes.ebi.
ac.uk/vol1/ftp/release/20130502/.\r\nSupplemental material available at GENETICS
online."
date_created: 2026-03-23T15:02:54Z
date_published: 2026-04-01T00:00:00Z
date_updated: 2026-07-27T11:56:04Z
day: '01'
ddc:
- '570'
department:
- _id: MaRo
doi: 10.1093/genetics/iyag042
external_id:
pmid:
- '41677404'
file:
- access_level: open_access
checksum: 926322c83b02522e96ab7a86e4011eec
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T11:54:00Z
date_updated: 2026-07-27T11:54:00Z
file_id: '22425'
file_name: 2026_Genetics_Kraetschmer.pdf
file_size: 734475
relation: main_file
success: 1
file_date_updated: 2026-07-27T11:54:00Z
has_accepted_license: '1'
intvolume: ' 232'
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: Genetics
publication_identifier:
issn:
- 1943-2631
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/medical-genomics-group/familyMC
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: A quantitative genetic model for indirect genetic effects and genomic imprinting
under random and assortative mating
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 232
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21502'
abstract:
- lang: eng
text: The mammalian brain stores glucose, the main circulating energy substrate,
as glycogen. In rodents, the cerebellum contains relatively high glycogen levels,
yet its cellular and subcellular distribution remains poorly defined. Using monoclonal
antibodies against glycogen, we examined its distribution in the mouse cerebellar
cortex. Glycogen was predominantly localized to Bergmann glia (BG) processes in
the molecular layer and was also detected in Purkinje cells (PCs), the principal
cerebellar neurons. To assess the functional significance of cerebellar glycogen,
we analyzed behavior in mice lacking glycogen synthase 1 (Gys1) in BG or PCs using
a floxed Gys1 line. Gys1 deficiency in either PCs or GFAP-positive cells reduced
anxiety-like behavior, whereas combined deletion caused PC degeneration and ataxia.
These findings reveal a critical role for glycogen metabolism in both astrocytes
and neurons in cerebellar function.
acknowledgement: This work was supported by the Novo Nordisk Foundation (NNFOC0058058,
H. Hirase), the Danmarks Frie Forskningsfond (0134-00107B and 5283-00069A, H.Hirase),
the Lundbeck Foundation, Japan Society for the Promotion of Science Grants-in-Aid
for Scientific Research (KAKENHI) program (22K06454/24H01221, A.K.; 23K27482, H.Hirai),
the Japan Agency for Medical Research and Development (AMED) Brain Mapping by Integrated
Neurotechnologies for Disease Studies (Brain/MINDS) (JP21dm0207111, H. Hirai), AMED
Brain/MINDS 2.0 (JP23wm0625001 and JP24wm0625103, H. Hirai), and grants from the
Spanish Ministerio de Ciencia e Innovación (MCIU/FEDER/AEI) (PID2020-118699 GB-100,
J.D.) and the Fundación Ramón Areces (J.D.). Sonam Akther has been supported by
the RIKEN IPA fellowship. We are thankful to Dr. Yuki Oe for his support in the
initial stage of this study and to Dan Xue for his help with the graphical abstract.
We thank Dr. Pia Weikop for providing CTN research infrastructure. The authors declare
no competing financial interests.
article_number: '115192'
article_processing_charge: Yes
article_type: original
author:
- first_name: Sonam
full_name: Akther, Sonam
last_name: Akther
- first_name: Ashley Bomin
full_name: Lee, Ashley Bomin
last_name: Lee
- first_name: Ayumu
full_name: Konno, Ayumu
last_name: Konno
- first_name: Antonis
full_name: Asiminas, Antonis
last_name: Asiminas
- first_name: Marta
full_name: Vittani, Marta
last_name: Vittani
- first_name: Tsuneko
full_name: Mishima, Tsuneko
last_name: Mishima
- first_name: Hirokazu
full_name: Hirai, Hirokazu
last_name: Hirai
- first_name: Claire Francesca
full_name: Meehan, Claire Francesca
last_name: Meehan
- first_name: Jordi
full_name: Duran, Jordi
last_name: Duran
- first_name: Joan
full_name: Guinovart, Joan
last_name: Guinovart
- first_name: Hitoshi
full_name: Ashida, Hitoshi
last_name: Ashida
- first_name: Tsuyoshi
full_name: Morita, Tsuyoshi
last_name: Morita
- first_name: Otto
full_name: Baba, Otto
last_name: Baba
- first_name: Ryuichi
full_name: Shigemoto, Ryuichi
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Maiken
full_name: Nedergaard, Maiken
last_name: Nedergaard
- first_name: Hajime
full_name: Hirase, Hajime
last_name: Hirase
citation:
ama: Akther S, Lee AB, Konno A, et al. Distribution and functional significance
of rodent cerebellar glycogen. iScience. 2026;29(4). doi:10.1016/j.isci.2026.115192
apa: Akther, S., Lee, A. B., Konno, A., Asiminas, A., Vittani, M., Mishima, T.,
… Hirase, H. (2026). Distribution and functional significance of rodent cerebellar
glycogen. IScience. Elsevier. https://doi.org/10.1016/j.isci.2026.115192
chicago: Akther, Sonam, Ashley Bomin Lee, Ayumu Konno, Antonis Asiminas, Marta Vittani,
Tsuneko Mishima, Hirokazu Hirai, et al. “Distribution and Functional Significance
of Rodent Cerebellar Glycogen.” IScience. Elsevier, 2026. https://doi.org/10.1016/j.isci.2026.115192.
ieee: S. Akther et al., “Distribution and functional significance of rodent
cerebellar glycogen,” iScience, vol. 29, no. 4. Elsevier, 2026.
ista: Akther S, Lee AB, Konno A, Asiminas A, Vittani M, Mishima T, Hirai H, Meehan
CF, Duran J, Guinovart J, Ashida H, Morita T, Baba O, Shigemoto R, Nedergaard
M, Hirase H. 2026. Distribution and functional significance of rodent cerebellar
glycogen. iScience. 29(4), 115192.
mla: Akther, Sonam, et al. “Distribution and Functional Significance of Rodent Cerebellar
Glycogen.” IScience, vol. 29, no. 4, 115192, Elsevier, 2026, doi:10.1016/j.isci.2026.115192.
short: S. Akther, A.B. Lee, A. Konno, A. Asiminas, M. Vittani, T. Mishima, H. Hirai,
C.F. Meehan, J. Duran, J. Guinovart, H. Ashida, T. Morita, O. Baba, R. Shigemoto,
M. Nedergaard, H. Hirase, IScience 29 (2026).
das_tickbox: '1'
dataavailabilitystatement: "This study did not generate new materials or reagents.All
data supporting the findings of this study are available from the lead contact upon
reasonable request.\r\nThis study did not generate any new code.\r\nAdditional raw
data can be obtained from the lead contact upon reasonable request."
date_created: 2026-03-29T22:07:07Z
date_published: 2026-04-17T00:00:00Z
date_updated: 2026-07-27T12:05:30Z
day: '17'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1016/j.isci.2026.115192
external_id:
pmid:
- '41890976'
file:
- access_level: open_access
checksum: 9c9ccc87072d04808e4af407d647ed20
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T12:03:23Z
date_updated: 2026-07-27T12:03:23Z
file_id: '22427'
file_name: 2026_iScience_Akther.pdf
file_size: 14469960
relation: main_file
success: 1
file_date_updated: 2026-07-27T12:03:23Z
has_accepted_license: '1'
intvolume: ' 29'
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: iScience
publication_identifier:
eissn:
- 2589-0042
publication_status: published
publisher: Elsevier
quality_controlled: '1'
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: no
title: Distribution and functional significance of rodent cerebellar glycogen
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 29
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21486'
abstract:
- lang: eng
text: Sex-chromosome systems are highly variable across animals, but how they transition
from one to another is not well understood. Diptera have undergone multiple sex-chromosome
turnovers and expansions while maintaining their general chromosomal content,
which makes them an ideal clade to study such transitions. We analyzed more than
100 dipteran whole-genome assemblies and identified 4 new lineages that underwent
sex-chromosome turnover (in addition to the 5 previously reported). We find that
the majority of turnovers happened in the group Schizophora, which tend to have
fewer genes on Muller element F (the chromosome homologous to the ancestral insect
X chromosome) than lower dipterans, a factor previously hypothesized to facilitate
turnover. Most derived X chromosomes have higher GC content than autosomes, consistent
with a high prevalence of male achiasmy in Diptera. In addition, an excess of
gene movement out of the X is detected for most of these new X chromosomes, and
many of these moved genes have high testis expression in Drosophila, suggesting
that out-of-X gene movement contributes to the long-term demasculinization of
X chromosomes.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: This work was supported by a grant from the Austrian Science Fund
(FWF, grant number PAT 8748323) to B.V. We thank the Vicoso group for their feedback
on an early version of the manuscript. We are grateful to Kamil Jaron and Julia
Gries for helpful discussions and for sharing their unpublished work. Computational
resources and support were provided by the Scientific Computing Unit at ISTA.
article_number: qrag003
article_processing_charge: Yes
article_type: original
author:
- first_name: Lorena Alexandra
full_name: Layana Franco, Lorena Alexandra
id: 02814589-eb8f-11eb-b029-a70074f3f18f
last_name: Layana Franco
orcid: 0000-0002-1253-6297
- first_name: Melissa A
full_name: Toups, Melissa A
id: 4E099E4E-F248-11E8-B48F-1D18A9856A87
last_name: Toups
orcid: 0000-0002-9752-7380
- first_name: Beatriz
full_name: Vicoso, Beatriz
id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
last_name: Vicoso
orcid: 0000-0002-4579-8306
citation:
ama: Layana Franco LA, Toups MA, Vicoso B. Causes and consequences of sex-chromosome
turnovers in Diptera. Evolution Letters. 2026;10(3). doi:10.1093/evlett/qrag003
apa: Layana Franco, L. A., Toups, M. A., & Vicoso, B. (2026). Causes and consequences
of sex-chromosome turnovers in Diptera. Evolution Letters. Oxford University
Press. https://doi.org/10.1093/evlett/qrag003
chicago: Layana Franco, Lorena Alexandra, Melissa A Toups, and Beatriz Vicoso. “Causes
and Consequences of Sex-Chromosome Turnovers in Diptera.” Evolution Letters.
Oxford University Press, 2026. https://doi.org/10.1093/evlett/qrag003.
ieee: L. A. Layana Franco, M. A. Toups, and B. Vicoso, “Causes and consequences
of sex-chromosome turnovers in Diptera,” Evolution Letters, vol. 10, no.
3. Oxford University Press, 2026.
ista: Layana Franco LA, Toups MA, Vicoso B. 2026. Causes and consequences of sex-chromosome
turnovers in Diptera. Evolution Letters. 10(3), qrag003.
mla: Layana Franco, Lorena Alexandra, et al. “Causes and Consequences of Sex-Chromosome
Turnovers in Diptera.” Evolution Letters, vol. 10, no. 3, qrag003, Oxford
University Press, 2026, doi:10.1093/evlett/qrag003.
short: L.A. Layana Franco, M.A. Toups, B. Vicoso, Evolution Letters 10 (2026).
corr_author: '1'
dataavailabilitystatement: Scripts, Supplementary Datasets 1–7, and Tables S1, S2,
S5 and S6 are also available at https://doi.org/10.15479/AT-ISTA-21116. Pipelines
are available at https://git.ista.ac.at/llayanaf/transitions_diptera.
date_created: 2026-03-23T15:05:42Z
date_published: 2026-06-01T00:00:00Z
date_updated: 2026-07-27T12:00:11Z
day: '01'
ddc:
- '570'
department:
- _id: BeVi
- _id: GradSch
doi: 10.1093/evlett/qrag003
file:
- access_level: open_access
checksum: 7c929e78c369a5e6e064bcf263e955ad
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T11:59:40Z
date_updated: 2026-07-27T11:59:40Z
file_id: '22426'
file_name: 2026_EvolutionLetters_Layana.pdf
file_size: 1895786
relation: main_file
success: 1
file_date_updated: 2026-07-27T11:59:40Z
has_accepted_license: '1'
intvolume: ' 10'
issue: '3'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 8ed82125-16d5-11f0-9cad-fbcae312235b
grant_number: PAT 8748323
name: Sex chromosomes in evolution and development
publication: Evolution Letters
publication_identifier:
eissn:
- 2056-3744
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
researchdata_availability: yes
status: public
supplementarymaterial: yes
title: Causes and consequences of sex-chromosome turnovers in Diptera
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21436'
abstract:
- lang: eng
text: 'The cobalt-intercalated transition metal dichalcogenide CoxTaS2 hosts a rich
landscape of magnetic phases that depend sensitively on x. While the stoichiometric
compound with x = 1/3 exhibits a single magnetic transition, samples with x≤0.325
display two transitions with an anomalous Hall effect (AHE) emerging in the lower
temperature phase. Here, we resolve the spin structure in each phase by employing
a suite of magneto-optical probes that include the discovery of anomalous magneto-birefringence:
a spontaneous time-reversal sensitive rotation of the principal optic axes. A
symmetry-based analysis identifies the AHE-active phase as an anisotropic (2+1)Q
state, in which magnetic modulation at one wavevector (Q) differs in symmetry
from that at the remaining two. The (2+1)Q state naturally exhibits scalar spin
chirality as a mechanism for the AHE and expands the classification of multi-Q
magnetic phases.'
acknowledgement: 'We thank Linda Ye and Yue Sun for helpful discussion. Experimental
and theoretical work at LBNL and UC Berkeley was funded by the Quantum Materials
(KC2202) program under the U.S. Department of Energy, Office of Science, Office
of Basic Energy Sciences, Materials Sciences and Engineering Division under Contract
No. DE-AC02-05CH11231. V.S. and J.O. received support from the Gordon and Betty
Moore Foundation’s EPiQS Initiative through Grant GBMF4537 to J.O. at UC Berkeley.
J.K. received support from the National Science Foundation Graduate Research Fellowship
Program under Grant No. 2146752. Any opinions, findings, and conclusions or recommendations
expressed in this material are those of the author(s) and do not necessarily reflect
the views of the National Science Foundation. During the preparation of this manuscript,
we became aware of the following related work: refs. 56,57,58.'
article_number: '47'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Jonathon
full_name: Kruppe, Jonathon
last_name: Kruppe
- first_name: Josue
full_name: Rodriguez, Josue
last_name: Rodriguez
- first_name: Catherine
full_name: Xu, Catherine
last_name: Xu
- first_name: James
full_name: Analytis, James
last_name: Analytis
- first_name: Joseph
full_name: Orenstein, Joseph
last_name: Orenstein
- first_name: Veronika
full_name: Sunko, Veronika
id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
last_name: Sunko
orcid: 0000-0003-2724-3523
citation:
ama: Kruppe J, Rodriguez J, Xu C, Analytis J, Orenstein J, Sunko V. Anisotropic
multi-Q order in CoxTaS2. npj Quantum Materials. 2026;11. doi:10.1038/s41535-026-00856-w
apa: Kruppe, J., Rodriguez, J., Xu, C., Analytis, J., Orenstein, J., & Sunko,
V. (2026). Anisotropic multi-Q order in CoxTaS2. Npj Quantum Materials.
Springer Nature. https://doi.org/10.1038/s41535-026-00856-w
chicago: Kruppe, Jonathon, Josue Rodriguez, Catherine Xu, James Analytis, Joseph
Orenstein, and Veronika Sunko. “Anisotropic Multi-Q Order in CoxTaS2.” Npj
Quantum Materials. Springer Nature, 2026. https://doi.org/10.1038/s41535-026-00856-w.
ieee: J. Kruppe, J. Rodriguez, C. Xu, J. Analytis, J. Orenstein, and V. Sunko, “Anisotropic
multi-Q order in CoxTaS2,” npj Quantum Materials, vol. 11. Springer Nature,
2026.
ista: Kruppe J, Rodriguez J, Xu C, Analytis J, Orenstein J, Sunko V. 2026. Anisotropic
multi-Q order in CoxTaS2. npj Quantum Materials. 11, 47.
mla: Kruppe, Jonathon, et al. “Anisotropic Multi-Q Order in CoxTaS2.” Npj Quantum
Materials, vol. 11, 47, Springer Nature, 2026, doi:10.1038/s41535-026-00856-w.
short: J. Kruppe, J. Rodriguez, C. Xu, J. Analytis, J. Orenstein, V. Sunko, Npj
Quantum Materials 11 (2026).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: The data underpinning the manuscript are available upon
reasonable request.
date_created: 2026-03-11T10:39:55Z
date_published: 2026-06-08T00:00:00Z
date_updated: 2026-07-27T11:26:11Z
day: '08'
ddc:
- '530'
department:
- _id: VeSu
doi: 10.1038/s41535-026-00856-w
external_id:
arxiv:
- '2507.12588'
file:
- access_level: open_access
checksum: 4d5f7e36be6190de93aa1a1bc852d188
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T11:24:16Z
date_updated: 2026-07-27T11:24:16Z
file_id: '22421'
file_name: 2026_npjQuantumMaterials_Kruppe.pdf
file_size: 2072860
relation: main_file
success: 1
file_date_updated: 2026-07-27T11:24:16Z
has_accepted_license: '1'
intvolume: ' 11'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: npj Quantum Materials
publication_identifier:
eissn:
- 2397-4648
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Anisotropic multi-Q order in CoxTaS2
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21472'
abstract:
- lang: eng
text: We study the ground state energy of a gas of spin 1/2 fermions with repulsive
short-range interactions. We derive an upper bound that agrees, at low density
e, with the Huang–Yang conjecture. The latter captures the first three terms in
an asymptotic low-density expansion, and in particular the Huang–Yang correction
term of order e^7/3. Our trial state is constructed using an adaptation of the
bosonic Bogoliubov theory to the Fermi system, where the correlation structure
of fermionic particles is incorporated by quasi-bosonic Bogoliubov transformations.
In the latter, it is important to consider a modified zero-energy scattering equation
that takes into account the presence of the Fermi sea, in the spirit of the Bethe–Goldstone
equation.
acknowledgement: "We thank the referees for valuable remarks. This work was partially
funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)
via the TRR 352 – Project-ID 470903074. PTN was partially supported by the European
Research Council via the ERC Consolidator Grant RAMBAS – Project-Nr. 10104424.\r\nOpen
access publishing facilitated by Università degli Studi di Milano, as part of the
Wiley - CRUI-CARE agreement."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Emanuela L.
full_name: Giacomelli, Emanuela L.
last_name: Giacomelli
- first_name: Christian
full_name: Hainzl, Christian
last_name: Hainzl
- first_name: Phan Thành
full_name: Nam, Phan Thành
last_name: Nam
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: 'Giacomelli EL, Hainzl C, Nam PT, Seiringer R. The Huang–Yang formula for the
low-density Fermi gas: Upper bound. Communications on Pure and Applied Mathematics.
2026;79(8):1919-1972. doi:10.1002/cpa.70040'
apa: 'Giacomelli, E. L., Hainzl, C., Nam, P. T., & Seiringer, R. (2026). The
Huang–Yang formula for the low-density Fermi gas: Upper bound. Communications
on Pure and Applied Mathematics. Wiley. https://doi.org/10.1002/cpa.70040'
chicago: 'Giacomelli, Emanuela L., Christian Hainzl, Phan Thành Nam, and Robert
Seiringer. “The Huang–Yang Formula for the Low-Density Fermi Gas: Upper Bound.”
Communications on Pure and Applied Mathematics. Wiley, 2026. https://doi.org/10.1002/cpa.70040.'
ieee: 'E. L. Giacomelli, C. Hainzl, P. T. Nam, and R. Seiringer, “The Huang–Yang
formula for the low-density Fermi gas: Upper bound,” Communications on Pure
and Applied Mathematics, vol. 79, no. 8. Wiley, pp. 1919–1972, 2026.'
ista: 'Giacomelli EL, Hainzl C, Nam PT, Seiringer R. 2026. The Huang–Yang formula
for the low-density Fermi gas: Upper bound. Communications on Pure and Applied
Mathematics. 79(8), 1919–1972.'
mla: 'Giacomelli, Emanuela L., et al. “The Huang–Yang Formula for the Low-Density
Fermi Gas: Upper Bound.” Communications on Pure and Applied Mathematics,
vol. 79, no. 8, Wiley, 2026, pp. 1919–72, doi:10.1002/cpa.70040.'
short: E.L. Giacomelli, C. Hainzl, P.T. Nam, R. Seiringer, Communications on Pure
and Applied Mathematics 79 (2026) 1919–1972.
das_tickbox: '0'
date_created: 2026-03-22T23:04:33Z
date_published: 2026-08-01T00:00:00Z
date_updated: 2026-07-27T11:40:33Z
day: '01'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1002/cpa.70040
external_id:
arxiv:
- '2409.17914'
file:
- access_level: open_access
checksum: 4ef624157c2f6cb837be229dd6b912cc
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T11:38:57Z
date_updated: 2026-07-27T11:38:57Z
file_id: '22423'
file_name: 2026_CommPureApplMath_Giacomelli.pdf
file_size: 2224756
relation: main_file
success: 1
file_date_updated: 2026-07-27T11:38:57Z
has_accepted_license: '1'
intvolume: ' 79'
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 1919-1972
publication: Communications on Pure and Applied Mathematics
publication_identifier:
eissn:
- 1097-0312
issn:
- 0010-3640
publication_status: published
publisher: Wiley
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: 'The Huang–Yang formula for the low-density Fermi gas: Upper bound'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 79
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21504'
abstract:
- lang: eng
text: Selecting an appropriate divergence measure is a critical aspect of machine
learning, as it directly impacts model performance. Among the most widely used,
we find the Kullback–Leibler (KL) divergence, originally introduced in kinetic
theory as a measure of relative entropy between probability distributions. Just
as in machine learning, the ability to quantify the proximity of probability distributions
plays a central role in kinetic theory. In this paper, we present a comparative
review of divergence measures rooted in kinetic theory, highlighting their theoretical
foundations and exploring their potential applications in machine learning and
artificial intelligence.
acknowledgement: "This work has been written within the activities of GNCS and GNFM
groups of INdAM (Italian\r\nNational Institute of High Mathematics). G.B. has been
funded by the European Union’s Horizon 2020 research and innovation programme under
the Marie Sklodowska-Curie grant agreement No 101034413. P.G. has been funded by
the European Union - NextGenerationEU, in the framework of the GRINSGrowing Resilient,
INclusive and Sustainable (GRINS PE00000018)."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Gennaro
full_name: Auricchio, Gennaro
last_name: Auricchio
- first_name: Giovanni
full_name: Brigati, Giovanni
id: 63ff57e8-1fbb-11ee-88f2-f558ffc59cf1
last_name: Brigati
- first_name: Paolo
full_name: Giudici, Paolo
last_name: Giudici
- first_name: Giuseppe
full_name: Toscani, Giuseppe
last_name: Toscani
citation:
ama: 'Auricchio G, Brigati G, Giudici P, Toscani G. From kinetic theory to AI: A
rediscovery of high-dimensional divergences and their properties. Mathematical
Models and Methods in Applied Sciences. 2026;36(6):1185-1233. doi:10.1142/S0218202526410010'
apa: 'Auricchio, G., Brigati, G., Giudici, P., & Toscani, G. (2026). From kinetic
theory to AI: A rediscovery of high-dimensional divergences and their properties.
Mathematical Models and Methods in Applied Sciences. World Scientific Publishing.
https://doi.org/10.1142/S0218202526410010'
chicago: 'Auricchio, Gennaro, Giovanni Brigati, Paolo Giudici, and Giuseppe Toscani.
“From Kinetic Theory to AI: A Rediscovery of High-Dimensional Divergences and
Their Properties.” Mathematical Models and Methods in Applied Sciences.
World Scientific Publishing, 2026. https://doi.org/10.1142/S0218202526410010.'
ieee: 'G. Auricchio, G. Brigati, P. Giudici, and G. Toscani, “From kinetic theory
to AI: A rediscovery of high-dimensional divergences and their properties,” Mathematical
Models and Methods in Applied Sciences, vol. 36, no. 6. World Scientific Publishing,
pp. 1185–1233, 2026.'
ista: 'Auricchio G, Brigati G, Giudici P, Toscani G. 2026. From kinetic theory to
AI: A rediscovery of high-dimensional divergences and their properties. Mathematical
Models and Methods in Applied Sciences. 36(6), 1185–1233.'
mla: 'Auricchio, Gennaro, et al. “From Kinetic Theory to AI: A Rediscovery of High-Dimensional
Divergences and Their Properties.” Mathematical Models and Methods in Applied
Sciences, vol. 36, no. 6, World Scientific Publishing, 2026, pp. 1185–233,
doi:10.1142/S0218202526410010.'
short: G. Auricchio, G. Brigati, P. Giudici, G. Toscani, Mathematical Models and
Methods in Applied Sciences 36 (2026) 1185–1233.
das_tickbox: '0'
date_created: 2026-03-29T22:07:08Z
date_published: 2026-06-01T00:00:00Z
date_updated: 2026-07-27T12:11:38Z
day: '01'
department:
- _id: JaMa
doi: 10.1142/S0218202526410010
ec_funded: 1
external_id:
arxiv:
- '2507.11387'
intvolume: ' 36'
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2507.11387
mathsc:
- 35B40
- 35L60
- 35K55
- 35Q70
- 35Q91
- 35Q92
month: '06'
oa: 1
oa_version: Preprint
page: 1185-1233
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Mathematical Models and Methods in Applied Sciences
publication_identifier:
eissn:
- 1793-6314
issn:
- 0218-2025
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: 'From kinetic theory to AI: A rediscovery of high-dimensional divergences and
their properties'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21721'
abstract:
- lang: eng
text: 'Swimming bacteria move through a fluid by actuating their moving body parts.
They are force-free and can be described as hydrodynamic force dipoles: pushers
or pullers. This modelling description is broadly used in biological physics and
active matter research, and it has successfully predicted, for example, the superfluid
behaviour of suspensions of pushers or the bend instability and emergence of turbulent
flows in active nematics. However, this description accounts only for the translational
motion of the swimming body and neglects the effects of hydrodynamic torque dipoles,
which are relevant to bacteria with rotary motor-driven flagella, such as swimming
Escherichia coli. Here we show that the torque dipole of confined swimming E.
coli can power the persistent rotation of symmetric discs. The torque dipole leads
to a traction force on the discs, an additive mechanism that is both contactless
and independent of the orientation of the bacteria. Our results indicate that
the torque dipole of swimming E. coli is notable in confined geometries, which
is relevant to bacterial transport through porous materials, biofilms and the
development of chiral fluids.'
acknowledged_ssus:
- _id: NanoFab
- _id: EM-Fac
acknowledgement: We thank E. Krasnopeeva for help with the bacterial culture, motility
and genetic engineering. We thank Q. Martinet for help with the experimental design,
F. Pertl for atomic force microscopy measurements and S. Hajek for the scanning
electron microscopy imaging. This project has received funding from the European
Research Council under the European Union’s Horizon Europe research and innovation
programme (VULCAN, 101086998). The views and opinions expressed are, however, those
of the authors only and do not necessarily reflect those of the European Union or
the European Research Council Executive Agency. Neither the European Union nor the
granting authority can be held responsible for them. J.P. thanks the Nanofabrication
and Electron Microscopy Shared Scientific Units of ISTA for support. Open access
funding provided by Institute of Science and Technology (IST Austria).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Daniel B
full_name: Grober, Daniel B
id: c692f879-718d-11ee-81f0-da7caa79c783
last_name: Grober
- first_name: Tanumoy
full_name: Dhar, Tanumoy
last_name: Dhar
- first_name: David
full_name: Saintillan, David
last_name: Saintillan
- first_name: Jérémie A
full_name: Palacci, Jérémie A
id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
last_name: Palacci
orcid: 0000-0002-7253-9465
citation:
ama: Grober DB, Dhar T, Saintillan D, Palacci JA. The hydrodynamic torque dipole
from rotary bacterial flagella powers symmetric discs. Nature Physics.
2026;22:620-627. doi:10.1038/s41567-026-03189-4
apa: Grober, D. B., Dhar, T., Saintillan, D., & Palacci, J. A. (2026). The hydrodynamic
torque dipole from rotary bacterial flagella powers symmetric discs. Nature
Physics. Springer Nature. https://doi.org/10.1038/s41567-026-03189-4
chicago: Grober, Daniel B, Tanumoy Dhar, David Saintillan, and Jérémie A Palacci.
“The Hydrodynamic Torque Dipole from Rotary Bacterial Flagella Powers Symmetric
Discs.” Nature Physics. Springer Nature, 2026. https://doi.org/10.1038/s41567-026-03189-4.
ieee: D. B. Grober, T. Dhar, D. Saintillan, and J. A. Palacci, “The hydrodynamic
torque dipole from rotary bacterial flagella powers symmetric discs,” Nature
Physics, vol. 22. Springer Nature, pp. 620–627, 2026.
ista: Grober DB, Dhar T, Saintillan D, Palacci JA. 2026. The hydrodynamic torque
dipole from rotary bacterial flagella powers symmetric discs. Nature Physics.
22, 620–627.
mla: Grober, Daniel B., et al. “The Hydrodynamic Torque Dipole from Rotary Bacterial
Flagella Powers Symmetric Discs.” Nature Physics, vol. 22, Springer Nature,
2026, pp. 620–27, doi:10.1038/s41567-026-03189-4.
short: D.B. Grober, T. Dhar, D. Saintillan, J.A. Palacci, Nature Physics 22 (2026)
620–627.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: The datasets generated and analysed during the current
study are openly available via Zenodo at https://doi.org/10.5281/zenodo.15236674
(ref. 32). All data are released under the CC-BY 4.0 licence. For any further questions
about data access or reuse, please contact the corresponding author.
date_created: 2026-04-12T22:01:51Z
date_published: 2026-04-01T00:00:00Z
date_updated: 2026-07-27T12:29:45Z
day: '01'
ddc:
- '570'
- '530'
department:
- _id: JePa
doi: 10.1038/s41567-026-03189-4
external_id:
pmid:
- '42006933'
file:
- access_level: open_access
checksum: bb28ed456cdd288d97854b084dd4b2e1
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T12:28:27Z
date_updated: 2026-07-27T12:28:27Z
file_id: '22429'
file_name: 2026_NaturePhysics_Grober.pdf
file_size: 2960392
relation: main_file
success: 1
file_date_updated: 2026-07-27T12:28:27Z
has_accepted_license: '1'
intvolume: ' 22'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 620-627
pmid: 1
project:
- _id: bdac72da-d553-11ed-ba76-eae56e802b74
grant_number: '101086998'
name: 'VULCAN: matter, powered from within'
publication: Nature Physics
publication_identifier:
eissn:
- 1745-2481
issn:
- 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: The hydrodynamic torque dipole from rotary bacterial flagella powers symmetric
discs
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21716'
abstract:
- lang: eng
text: Male germline development in plants is highly sensitive to heat stress, with
elevated temperatures frequently impairing male fertility and consequently reducing
seed production. Indeed, recent global warming has decreased major crop yields,
emphasizing the urgent need to elucidate the molecular and cellular mechanisms
underlying heat-induced male sterility. This review synthesizes current knowledge
on how heat stress disrupts microsporogenesis and microgametogenesis, and how
plants counteract these stresses through diverse thermotolerance mechanisms. We
emphasize temperature-sensitive processes, including meiotic progression in male
germ cells, programmed cell death of somatic tapetal nurse cells, and post-meiotic
pollen tube development. We further discuss how epigenetic regulators enhance
thermotolerance by reprogramming DNA methylation landscapes and modulating histone
variant distribution. Finally, we propose future directions aimed at understanding
the mechanisms of reproductive thermotolerance from the epigenetic perspective.
acknowledgement: This work was supported by JSPS KAKENHI (grant number JP22J01430)
and the Osamu Hayaishi Memorial Scholarship for Study Abroad for H.N.
article_number: '102881'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Hiroki
full_name: Nagai, Hiroki
id: 608df3e6-e2ab-11ed-8890-c9318cec7da4
last_name: Nagai
orcid: 0000-0003-1671-9434
- first_name: Xiaoqi
full_name: Feng, Xiaoqi
id: e0164712-22ee-11ed-b12a-d80fcdf35958
last_name: Feng
orcid: 0000-0002-4008-1234
citation:
ama: NAGAI H, Feng X. Genetic and epigenetic mechanisms underlying male reproductive
thermotolerance. Current Opinion in Plant Biology. 2026;91(6). doi:10.1016/j.pbi.2026.102881
apa: NAGAI, H., & Feng, X. (2026). Genetic and epigenetic mechanisms underlying
male reproductive thermotolerance. Current Opinion in Plant Biology. Elsevier.
https://doi.org/10.1016/j.pbi.2026.102881
chicago: NAGAI, HIROKI, and Xiaoqi Feng. “Genetic and Epigenetic Mechanisms Underlying
Male Reproductive Thermotolerance.” Current Opinion in Plant Biology. Elsevier,
2026. https://doi.org/10.1016/j.pbi.2026.102881.
ieee: H. NAGAI and X. Feng, “Genetic and epigenetic mechanisms underlying male reproductive
thermotolerance,” Current Opinion in Plant Biology, vol. 91, no. 6. Elsevier,
2026.
ista: NAGAI H, Feng X. 2026. Genetic and epigenetic mechanisms underlying male reproductive
thermotolerance. Current Opinion in Plant Biology. 91(6), 102881.
mla: NAGAI, HIROKI, and Xiaoqi Feng. “Genetic and Epigenetic Mechanisms Underlying
Male Reproductive Thermotolerance.” Current Opinion in Plant Biology, vol.
91, no. 6, 102881, Elsevier, 2026, doi:10.1016/j.pbi.2026.102881.
short: H. NAGAI, X. Feng, Current Opinion in Plant Biology 91 (2026).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: No data was used for the research described in the article.
date_created: 2026-04-12T22:01:50Z
date_published: 2026-06-01T00:00:00Z
date_updated: 2026-07-27T12:26:03Z
day: '01'
ddc:
- '580'
department:
- _id: XiFe
doi: 10.1016/j.pbi.2026.102881
external_id:
pmid:
- '41955759'
file:
- access_level: open_access
checksum: 929e801eb8f2aef08cf9d9f97be2b2af
content_type: application/pdf
creator: dernst
date_created: 2026-07-27T12:20:55Z
date_updated: 2026-07-27T12:20:55Z
file_id: '22428'
file_name: 2026_CurrentOpinionPlantBiology_Nagai.pdf
file_size: 2255022
relation: main_file
success: 1
file_date_updated: 2026-07-27T12:20:55Z
has_accepted_license: '1'
intvolume: ' 91'
issue: '6'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: Current Opinion in Plant Biology
publication_identifier:
eissn:
- 1879-0356
issn:
- 1369-5266
publication_status: published
publisher: Elsevier
quality_controlled: '1'
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Genetic and epigenetic mechanisms underlying male reproductive thermotolerance
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 91
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21726'
abstract:
- lang: eng
text: Quantum control of the many-body wavefunction is a central challenge in quantum
materials research, as it could yield a precise control knob to manipulate emergent
phenomena. Floquet engineering, the coherent dressing of quantum states with periodic
non-resonant optical fields, has become an important strategy for quantum control.
Most applications to solid-state systems have targeted weakly interacting or single-ion
states, leaving the manipulation of many-body wavefunctions largely unexplored.
Here we use Floquet engineering to achieve quantum control of a strongly correlated
Hubbard exciton in the one-dimensional Mott insulator Sr2CuO3. A non-resonant
mid-infrared optical field coherently dresses the exciton wavefunction, driving
its rotation between bright and dark states. We use resonant third-harmonic generation
to quantify ultrafast π/2 rotations on the Bloch sphere spanned by these exciton
states. Our work advances the quest towards programmable control of correlated
states and exciton-based quantum sensing.
acknowledgement: We thank K. Burch, M. Buzzi, P. Cappellaro, A. Cavalleri, E. Demler,
M. Eckstein, T. Giamarchi, D. Hsieh, H. Okamoto, D. Reis, T. Tohyama, P. Werner
and A. Yacoby for insightful discussions. We thank B. Baxley for assistance with
graphics. This work was primarily supported by the US Department of Energy, Office
of Basic Energy Sciences, Early Career Award Program, under award no. DE-SC0022883
(D.R.B., F.G., T.M. and M.M.) and award no. DE-SC0024494 (D.C. and M.C.). D.C. and
P.B.M.D.O. acknowledge funding from the NSF GRFP under grant nos. DGE-1845298 and
DGE 2140743, respectively. The work performed at Brookhaven National Laboratory
was supported by the US Department of Energy, Division of Materials Science, under
contract no. DE-SC0012704. We acknowledge funding from the Deutsche Forschungsgemeinschaft
(DFG, German Research Foundation) – 531215165 (Research Unit “OPTIMAL’). This work
was supported by the Cluster of Excellence ‘Advanced Imaging of Matter’ (AIM) and
the Max Planck-New York City Center for Non-Equilibrium Quantum Phenomena. The Flatiron
Institute is a division of the Simons Foundation. Simulations were performed with
computing resources granted by RWTH Aachen University under projects rwth0752 and
rwth1258. We acknowledge computing time on the supercomputer JURECA52 at Forschungszentrum
Jülich under the project ID enhancerg.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Denitsa Rangelova
full_name: Baykusheva, Denitsa Rangelova
id: 71b4d059-2a03-11ee-914d-dfa3beed6530
last_name: Baykusheva
orcid: 0000-0002-7438-1139
- first_name: Deven
full_name: Carmichael, Deven
last_name: Carmichael
- first_name: Clara S.
full_name: Weber, Clara S.
last_name: Weber
- first_name: I. Te
full_name: Lu, I. Te
last_name: Lu
- first_name: Filippo
full_name: Glerean, Filippo
last_name: Glerean
- first_name: Tepie
full_name: Meng, Tepie
last_name: Meng
- first_name: Pedro B.M.
full_name: De Oliveira, Pedro B.M.
last_name: De Oliveira
- first_name: Christopher C.
full_name: Homes, Christopher C.
last_name: Homes
- first_name: Igor A.
full_name: Zaliznyak, Igor A.
last_name: Zaliznyak
- first_name: G. D.
full_name: Gu, G. D.
last_name: Gu
- first_name: Mark P.M.
full_name: Dean, Mark P.M.
last_name: Dean
- first_name: Angel
full_name: Rubio, Angel
last_name: Rubio
- first_name: Dante M.
full_name: Kennes, Dante M.
last_name: Kennes
- first_name: Martin
full_name: Claassen, Martin
last_name: Claassen
- first_name: Matteo
full_name: Mitrano, Matteo
last_name: Mitrano
citation:
ama: Baykusheva DR, Carmichael D, Weber CS, et al. Quantum control of Hubbard excitons.
Nature Materials. 2026;25:937-943. doi:10.1038/s41563-026-02517-6
apa: Baykusheva, D. R., Carmichael, D., Weber, C. S., Lu, I. T., Glerean, F., Meng,
T., … Mitrano, M. (2026). Quantum control of Hubbard excitons. Nature Materials.
Springer Nature. https://doi.org/10.1038/s41563-026-02517-6
chicago: Baykusheva, Denitsa Rangelova, Deven Carmichael, Clara S. Weber, I. Te
Lu, Filippo Glerean, Tepie Meng, Pedro B.M. De Oliveira, et al. “Quantum Control
of Hubbard Excitons.” Nature Materials. Springer Nature, 2026. https://doi.org/10.1038/s41563-026-02517-6.
ieee: D. R. Baykusheva et al., “Quantum control of Hubbard excitons,” Nature
Materials, vol. 25. Springer Nature, pp. 937–943, 2026.
ista: Baykusheva DR, Carmichael D, Weber CS, Lu IT, Glerean F, Meng T, De Oliveira
PBM, Homes CC, Zaliznyak IA, Gu GD, Dean MPM, Rubio A, Kennes DM, Claassen M,
Mitrano M. 2026. Quantum control of Hubbard excitons. Nature Materials. 25, 937–943.
mla: Baykusheva, Denitsa Rangelova, et al. “Quantum Control of Hubbard Excitons.”
Nature Materials, vol. 25, Springer Nature, 2026, pp. 937–43, doi:10.1038/s41563-026-02517-6.
short: D.R. Baykusheva, D. Carmichael, C.S. Weber, I.T. Lu, F. Glerean, T. Meng,
P.B.M. De Oliveira, C.C. Homes, I.A. Zaliznyak, G.D. Gu, M.P.M. Dean, A. Rubio,
D.M. Kennes, M. Claassen, M. Mitrano, Nature Materials 25 (2026) 937–943.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: The data that support the findings of this study are present
in the Article and its Supplementary Information. Source data for Figs. 1–4 are
available via Figshare at https://doi.org/10.6084/m9.figshare.31146367 (ref. 51).
Any additional data are available from the corresponding authors upon request.
date_created: 2026-04-12T22:01:53Z
date_published: 2026-06-01T00:00:00Z
date_updated: 2026-07-27T12:32:56Z
day: '01'
department:
- _id: DeBa
doi: 10.1038/s41563-026-02517-6
external_id:
arxiv:
- '2601.20695 '
intvolume: ' 25'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2601.20695
month: '06'
oa: 1
oa_version: Preprint
page: 937-943
publication: Nature Materials
publication_identifier:
eissn:
- 1476-4660
issn:
- 1476-1122
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- relation: erratum
url: https://doi.org/10.1038/s41563-026-02697-1
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Quantum control of Hubbard excitons
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2026'
...