---
OA_place: repository
_id: '9435'
abstract:
- lang: eng
  text: For any given positive integer l, we prove that every plane deformation of
    a circlewhich preserves the 1/2and 1/ (2l + 1) -rational caustics is trivial i.e.
    the deformationconsists only of similarities (rescalings and isometries).
article_number: '2107.03499'
article_processing_charge: No
arxiv: 1
author:
- first_name: Vadim
  full_name: Kaloshin, Vadim
  id: FE553552-CDE8-11E9-B324-C0EBE5697425
  last_name: Kaloshin
  orcid: 0000-0002-6051-2628
- first_name: Edmond
  full_name: Koudjinan, Edmond
  id: 52DF3E68-AEFA-11EA-95A4-124A3DDC885E
  last_name: Koudjinan
  orcid: 0000-0003-2640-4049
citation:
  ama: Kaloshin V, Koudjinan E. Non co-preservation of the 1/2 and  1/(2l+1)-rational
    caustics along deformations of circles. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2107.03499">10.48550/arXiv.2107.03499</a>
  apa: Kaloshin, V., &#38; Koudjinan, E. (n.d.). Non co-preservation of the 1/2 and 
    1/(2l+1)-rational caustics along deformations of circles. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2107.03499">https://doi.org/10.48550/arXiv.2107.03499</a>
  chicago: Kaloshin, Vadim, and Edmond Koudjinan. “Non Co-Preservation of the 1/2
    and  1/(2l+1)-Rational Caustics along Deformations of Circles.” <i>ArXiv</i>,
    n.d. <a href="https://doi.org/10.48550/arXiv.2107.03499">https://doi.org/10.48550/arXiv.2107.03499</a>.
  ieee: V. Kaloshin and E. Koudjinan, “Non co-preservation of the 1/2 and  1/(2l+1)-rational
    caustics along deformations of circles,” <i>arXiv</i>. .
  ista: Kaloshin V, Koudjinan E. Non co-preservation of the 1/2 and  1/(2l+1)-rational
    caustics along deformations of circles. arXiv, 2107.03499.
  mla: Kaloshin, Vadim, and Edmond Koudjinan. “Non Co-Preservation of the 1/2 and 
    1/(2l+1)-Rational Caustics along Deformations of Circles.” <i>ArXiv</i>, 2107.03499,
    doi:<a href="https://doi.org/10.48550/arXiv.2107.03499">10.48550/arXiv.2107.03499</a>.
  short: V. Kaloshin, E. Koudjinan, ArXiv (n.d.).
corr_author: '1'
date_created: 2021-05-30T13:58:13Z
date_published: 2021-07-07T00:00:00Z
date_updated: 2025-01-22T08:09:40Z
day: '07'
ddc:
- '500'
department:
- _id: VaKa
doi: 10.48550/arXiv.2107.03499
external_id:
  arxiv:
  - '2107.03499'
file:
- access_level: open_access
  checksum: b281b5c2e3e90de0646c3eafcb2c6c25
  content_type: application/pdf
  creator: ekoudjin
  date_created: 2021-05-30T13:57:37Z
  date_updated: 2021-05-30T13:57:37Z
  file_id: '9436'
  file_name: CoExistence 2&3 caustics 3_17_6_2_3.pdf
  file_size: 353431
  relation: main_file
file_date_updated: 2021-05-30T13:57:37Z
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2107.03499
month: '07'
oa: 1
oa_version: Submitted Version
publication: arXiv
publication_status: submitted
status: public
title: Non co-preservation of the 1/2 and  1/(2l+1)-rational caustics along deformations
  of circles
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9439'
abstract:
- lang: eng
  text: The ability to adapt to changes in stimulus statistics is a hallmark of sensory
    systems. Here, we developed a theoretical framework that can account for the dynamics
    of adaptation from an information processing perspective. We use this framework
    to optimize and analyze adaptive sensory codes, and we show that codes optimized
    for stationary environments can suffer from prolonged periods of poor performance
    when the environment changes. To mitigate the adversarial effects of these environmental
    changes, sensory systems must navigate tradeoffs between the ability to accurately
    encode incoming stimuli and the ability to rapidly detect and adapt to changes
    in the distribution of these stimuli. We derive families of codes that balance
    these objectives, and we demonstrate their close match to experimentally observed
    neural dynamics during mean and variance adaptation. Our results provide a unifying
    perspective on adaptation across a range of sensory systems, environments, and
    sensory tasks.
acknowledgement: We thank D. Kastner and T. Münch for generously providing figures
  from their work. We also thank V. Jayaraman, M. Noorman, T. Ma, and K. Krishnamurthy
  for useful discussions and feedback on the manuscript. W.F.M. was funded by the
  European Union’s Horizon 2020 Research and Innovation Programme under Marie Skłodowska-Curie
  Grant Agreement No. 754411. A.M.H. was supported by the Howard Hughes Medical Institute.
article_processing_charge: No
article_type: original
author:
- first_name: Wiktor F
  full_name: Mlynarski, Wiktor F
  id: 358A453A-F248-11E8-B48F-1D18A9856A87
  last_name: Mlynarski
- first_name: Ann M.
  full_name: Hermundstad, Ann M.
  last_name: Hermundstad
citation:
  ama: Mlynarski WF, Hermundstad AM. Efficient and adaptive sensory codes. <i>Nature
    Neuroscience</i>. 2021;24:998-1009. doi:<a href="https://doi.org/10.1038/s41593-021-00846-0">10.1038/s41593-021-00846-0</a>
  apa: Mlynarski, W. F., &#38; Hermundstad, A. M. (2021). Efficient and adaptive sensory
    codes. <i>Nature Neuroscience</i>. Springer Nature. <a href="https://doi.org/10.1038/s41593-021-00846-0">https://doi.org/10.1038/s41593-021-00846-0</a>
  chicago: Mlynarski, Wiktor F, and Ann M. Hermundstad. “Efficient and Adaptive Sensory
    Codes.” <i>Nature Neuroscience</i>. Springer Nature, 2021. <a href="https://doi.org/10.1038/s41593-021-00846-0">https://doi.org/10.1038/s41593-021-00846-0</a>.
  ieee: W. F. Mlynarski and A. M. Hermundstad, “Efficient and adaptive sensory codes,”
    <i>Nature Neuroscience</i>, vol. 24. Springer Nature, pp. 998–1009, 2021.
  ista: Mlynarski WF, Hermundstad AM. 2021. Efficient and adaptive sensory codes.
    Nature Neuroscience. 24, 998–1009.
  mla: Mlynarski, Wiktor F., and Ann M. Hermundstad. “Efficient and Adaptive Sensory
    Codes.” <i>Nature Neuroscience</i>, vol. 24, Springer Nature, 2021, pp. 998–1009,
    doi:<a href="https://doi.org/10.1038/s41593-021-00846-0">10.1038/s41593-021-00846-0</a>.
  short: W.F. Mlynarski, A.M. Hermundstad, Nature Neuroscience 24 (2021) 998–1009.
date_created: 2021-05-30T22:01:24Z
date_published: 2021-05-20T00:00:00Z
date_updated: 2025-06-12T06:41:38Z
day: '20'
department:
- _id: GaTk
doi: 10.1038/s41593-021-00846-0
ec_funded: 1
external_id:
  isi:
  - '000652577300003'
  pmid:
  - '34017131'
intvolume: '        24'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: 'https://doi.org/10.1101/669200 '
month: '05'
oa: 1
oa_version: Preprint
page: 998-1009
pmid: 1
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Nature Neuroscience
publication_identifier:
  eissn:
  - 1546-1726
  issn:
  - 1097-6256
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficient and adaptive sensory codes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2021'
...
---
_id: '9441'
abstract:
- lang: eng
  text: "Isomanifolds are the generalization of isosurfaces to arbitrary dimension
    and codimension, i.e. submanifolds of ℝ^d defined as the zero set of some multivariate
    multivalued smooth function f: ℝ^d → ℝ^{d-n}, where n is the intrinsic dimension
    of the manifold. A natural way to approximate a smooth isomanifold M is to consider
    its Piecewise-Linear (PL) approximation M̂ based on a triangulation \U0001D4AF
    of the ambient space ℝ^d. In this paper, we describe a simple algorithm to trace
    isomanifolds from a given starting point. The algorithm works for arbitrary dimensions
    n and d, and any precision D. Our main result is that, when f (or M) has bounded
    complexity, the complexity of the algorithm is polynomial in d and δ = 1/D (and
    unavoidably exponential in n). Since it is known that for δ = Ω (d^{2.5}), M̂
    is O(D²)-close and isotopic to M, our algorithm produces a faithful PL-approximation
    of isomanifolds of bounded complexity in time polynomial in d. Combining this
    algorithm with dimensionality reduction techniques, the dependency on d in the
    size of M̂ can be completely removed with high probability. We also show that
    the algorithm can handle isomanifolds with boundary and, more generally, isostratifolds.
    The algorithm for isomanifolds with boundary has been implemented and experimental
    results are reported, showing that it is practical and can handle cases that are
    far ahead of the state-of-the-art. "
acknowledgement: We thank Dominique Attali, Guilherme de Fonseca, Arijit Ghosh, Vincent
  Pilaud and Aurélien Alvarez for their comments and suggestions. We also acknowledge
  the reviewers.
alternative_title:
- LIPIcs
article_processing_charge: No
author:
- first_name: Jean-Daniel
  full_name: Boissonnat, Jean-Daniel
  last_name: Boissonnat
- first_name: Siargey
  full_name: Kachanovich, Siargey
  last_name: Kachanovich
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: 'Boissonnat J-D, Kachanovich S, Wintraecken M. Tracing isomanifolds in Rd in
    time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations. In: <i>37th
    International Symposium on Computational Geometry (SoCG 2021)</i>. Vol 189. Leibniz
    International Proceedings in Informatics (LIPIcs). Dagstuhl, Germany: Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik; 2021:17:1-17:16. doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2021.17">10.4230/LIPIcs.SoCG.2021.17</a>'
  apa: 'Boissonnat, J.-D., Kachanovich, S., &#38; Wintraecken, M. (2021). Tracing
    isomanifolds in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations.
    In <i>37th International Symposium on Computational Geometry (SoCG 2021)</i> (Vol.
    189, p. 17:1-17:16). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2021.17">https://doi.org/10.4230/LIPIcs.SoCG.2021.17</a>'
  chicago: 'Boissonnat, Jean-Daniel, Siargey Kachanovich, and Mathijs Wintraecken.
    “Tracing Isomanifolds in Rd in Time Polynomial in d Using Coxeter-Freudenthal-Kuhn
    Triangulations.” In <i>37th International Symposium on Computational Geometry
    (SoCG 2021)</i>, 189:17:1-17:16. Leibniz International Proceedings in Informatics
    (LIPIcs). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2021. <a href="https://doi.org/10.4230/LIPIcs.SoCG.2021.17">https://doi.org/10.4230/LIPIcs.SoCG.2021.17</a>.'
  ieee: J.-D. Boissonnat, S. Kachanovich, and M. Wintraecken, “Tracing isomanifolds
    in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations,”
    in <i>37th International Symposium on Computational Geometry (SoCG 2021)</i>,
    Virtual, 2021, vol. 189, p. 17:1-17:16.
  ista: 'Boissonnat J-D, Kachanovich S, Wintraecken M. 2021. Tracing isomanifolds
    in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations. 37th
    International Symposium on Computational Geometry (SoCG 2021). SoCG: Symposium
    on Computational GeometryLeibniz International Proceedings in Informatics (LIPIcs),
    LIPIcs, vol. 189, 17:1-17:16.'
  mla: Boissonnat, Jean-Daniel, et al. “Tracing Isomanifolds in Rd in Time Polynomial
    in d Using Coxeter-Freudenthal-Kuhn Triangulations.” <i>37th International Symposium
    on Computational Geometry (SoCG 2021)</i>, vol. 189, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2021, p. 17:1-17:16, doi:<a href="https://doi.org/10.4230/LIPIcs.SoCG.2021.17">10.4230/LIPIcs.SoCG.2021.17</a>.
  short: J.-D. Boissonnat, S. Kachanovich, M. Wintraecken, in:, 37th International
    Symposium on Computational Geometry (SoCG 2021), Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, Dagstuhl, Germany, 2021, p. 17:1-17:16.
conference:
  end_date: 2021-06-11
  location: Virtual
  name: 'SoCG: Symposium on Computational Geometry'
  start_date: 2021-06-07
date_created: 2021-06-02T10:10:55Z
date_published: 2021-06-02T00:00:00Z
date_updated: 2025-04-15T07:09:18Z
day: '02'
ddc:
- '005'
- '516'
- '514'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2021.17
ec_funded: 1
file:
- access_level: open_access
  checksum: c322aa48d5d35a35877896cc565705b6
  content_type: application/pdf
  creator: mwintrae
  date_created: 2021-06-02T10:22:33Z
  date_updated: 2021-06-02T10:22:33Z
  file_id: '9442'
  file_name: LIPIcs-SoCG-2021-17.pdf
  file_size: 1972902
  relation: main_file
  success: 1
file_date_updated: 2021-06-02T10:22:33Z
has_accepted_license: '1'
intvolume: '       189'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 17:1-17:16
place: Dagstuhl, Germany
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: 37th International Symposium on Computational Geometry (SoCG 2021)
publication_identifier:
  isbn:
  - 978-3-95977-184-9
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
  record:
  - id: '12960'
    relation: later_version
    status: public
scopus_import: '1'
series_title: Leibniz International Proceedings in Informatics (LIPIcs)
status: public
title: Tracing isomanifolds in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn
  triangulations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 189
year: '2021'
...
---
_id: '9443'
abstract:
- lang: eng
  text: Endoplasmic reticulum–plasma membrane contact sites (ER–PM CS) play fundamental
    roles in all eukaryotic cells. Arabidopsis thaliana mutants lacking the ER–PM
    protein tether synaptotagmin1 (SYT1) exhibit decreased PM integrity under multiple
    abiotic stresses, such as freezing, high salt, osmotic stress, and mechanical
    damage. Here, we show that, together with SYT1, the stress-induced SYT3 is an
    ER–PM tether that also functions in maintaining PM integrity. The ER–PM CS localization
    of SYT1 and SYT3 is dependent on PM phosphatidylinositol-4-phosphate and is regulated
    by abiotic stress. Lipidomic analysis revealed that cold stress increased the
    accumulation of diacylglycerol at the PM in a syt1/3 double mutant relative to
    wild-type while the levels of most glycerolipid species remain unchanged. In addition,
    the SYT1-green fluorescent protein fusion preferentially binds diacylglycerol
    in vivo with little affinity for polar glycerolipids. Our work uncovers a SYT-dependent
    mechanism of stress adaptation counteracting the detrimental accumulation of diacylglycerol
    at the PM produced during episodes of abiotic stress.
acknowledgement: "We would also like to thank Lothar Willmitzer for the lipidomic
  analysis at the Max Planck Institute of Molecular Plant Physiology (Potsdam, Germany).
  We thank Manuela Vega from SCI for her technical assistance in image analysis. We
  thank John R. Pearson and the Bionand Nanoimaging Unit, F. David Navas Fernández
  and the SCAI Imaging Facility and The Plant Cell Biology facility at the Shanghai
  Center for Plant Stress Biology for assistance with confocal microscopy. The FaFAH1
  clone was a gift from Iraida Amaya Saavedra (IFAPA-Centro de Churriana, Málaga,
  Spain). The AHA3 antibody against the H+-ATPase was a gift from Ramón Serrano Salom
  (Instituto de Biología Molecular y Celular de Plantas, Valencia, Spain). The MAP-mTU2-SAC1
  construct was provided by Yvon Jaillais (Laboratoire Reproduction et Développement
  des Plantes, Univ Lyon, France). The pGWB5 from the pGWB vector series, was provided
  by Tsuyoshi Nakagawa (Department of Molecular and Functional Genomics, Shimane University).
  We thank Plan Propio from the University of Málaga for financial support.\r\nFunding"
article_processing_charge: No
article_type: original
author:
- first_name: N
  full_name: Ruiz-Lopez, N
  last_name: Ruiz-Lopez
- first_name: J
  full_name: Pérez-Sancho, J
  last_name: Pérez-Sancho
- first_name: A
  full_name: Esteban Del Valle, A
  last_name: Esteban Del Valle
- first_name: RP
  full_name: Haslam, RP
  last_name: Haslam
- first_name: S
  full_name: Vanneste, S
  last_name: Vanneste
- first_name: R
  full_name: Catalá, R
  last_name: Catalá
- first_name: C
  full_name: Perea-Resa, C
  last_name: Perea-Resa
- first_name: D
  full_name: Van Damme, D
  last_name: Van Damme
- first_name: S
  full_name: García-Hernández, S
  last_name: García-Hernández
- first_name: A
  full_name: Albert, A
  last_name: Albert
- first_name: J
  full_name: Vallarino, J
  last_name: Vallarino
- first_name: J
  full_name: Lin, J
  last_name: Lin
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: AP
  full_name: Macho, AP
  last_name: Macho
- first_name: J
  full_name: Salinas, J
  last_name: Salinas
- first_name: A
  full_name: Rosado, A
  last_name: Rosado
- first_name: JA
  full_name: Napier, JA
  last_name: Napier
- first_name: V
  full_name: Amorim-Silva, V
  last_name: Amorim-Silva
- first_name: MA
  full_name: Botella, MA
  last_name: Botella
citation:
  ama: Ruiz-Lopez N, Pérez-Sancho J, Esteban Del Valle A, et al. Synaptotagmins at
    the endoplasmic reticulum-plasma membrane contact sites maintain diacylglycerol
    homeostasis during abiotic stress. <i>Plant Cell</i>. 2021;33(7):2431-2453. doi:<a
    href="https://doi.org/10.1093/plcell/koab122">10.1093/plcell/koab122</a>
  apa: Ruiz-Lopez, N., Pérez-Sancho, J., Esteban Del Valle, A., Haslam, R., Vanneste,
    S., Catalá, R., … Botella, M. (2021). Synaptotagmins at the endoplasmic reticulum-plasma
    membrane contact sites maintain diacylglycerol homeostasis during abiotic stress.
    <i>Plant Cell</i>. American Society of Plant Biologists. <a href="https://doi.org/10.1093/plcell/koab122">https://doi.org/10.1093/plcell/koab122</a>
  chicago: Ruiz-Lopez, N, J Pérez-Sancho, A Esteban Del Valle, RP Haslam, S Vanneste,
    R Catalá, C Perea-Resa, et al. “Synaptotagmins at the Endoplasmic Reticulum-Plasma
    Membrane Contact Sites Maintain Diacylglycerol Homeostasis during Abiotic Stress.”
    <i>Plant Cell</i>. American Society of Plant Biologists, 2021. <a href="https://doi.org/10.1093/plcell/koab122">https://doi.org/10.1093/plcell/koab122</a>.
  ieee: N. Ruiz-Lopez <i>et al.</i>, “Synaptotagmins at the endoplasmic reticulum-plasma
    membrane contact sites maintain diacylglycerol homeostasis during abiotic stress,”
    <i>Plant Cell</i>, vol. 33, no. 7. American Society of Plant Biologists, pp. 2431–2453,
    2021.
  ista: Ruiz-Lopez N, Pérez-Sancho J, Esteban Del Valle A, Haslam R, Vanneste S, Catalá
    R, Perea-Resa C, Van Damme D, García-Hernández S, Albert A, Vallarino J, Lin J,
    Friml J, Macho A, Salinas J, Rosado A, Napier J, Amorim-Silva V, Botella M. 2021.
    Synaptotagmins at the endoplasmic reticulum-plasma membrane contact sites maintain
    diacylglycerol homeostasis during abiotic stress. Plant Cell. 33(7), 2431–2453.
  mla: Ruiz-Lopez, N., et al. “Synaptotagmins at the Endoplasmic Reticulum-Plasma
    Membrane Contact Sites Maintain Diacylglycerol Homeostasis during Abiotic Stress.”
    <i>Plant Cell</i>, vol. 33, no. 7, American Society of Plant Biologists, 2021,
    pp. 2431–53, doi:<a href="https://doi.org/10.1093/plcell/koab122">10.1093/plcell/koab122</a>.
  short: N. Ruiz-Lopez, J. Pérez-Sancho, A. Esteban Del Valle, R. Haslam, S. Vanneste,
    R. Catalá, C. Perea-Resa, D. Van Damme, S. García-Hernández, A. Albert, J. Vallarino,
    J. Lin, J. Friml, A. Macho, J. Salinas, A. Rosado, J. Napier, V. Amorim-Silva,
    M. Botella, Plant Cell 33 (2021) 2431–2453.
date_created: 2021-06-02T13:13:58Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2025-04-14T07:45:00Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1093/plcell/koab122
ec_funded: 1
external_id:
  isi:
  - '000703938100026'
  pmid:
  - '33944955'
file:
- access_level: open_access
  checksum: 22d596678d00310d793611864a6d0fcd
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-10-14T13:36:38Z
  date_updated: 2021-10-14T13:36:38Z
  file_id: '10141'
  file_name: 2021_PlantCell_RuizLopez.pdf
  file_size: 2952028
  relation: main_file
  success: 1
file_date_updated: 2021-10-14T13:36:38Z
has_accepted_license: '1'
intvolume: '        33'
isi: 1
issue: '7'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '07'
oa: 1
oa_version: Published Version
page: 2431-2453
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
publication: Plant Cell
publication_identifier:
  eissn:
  - 1532-298x
  issn:
  - 1040-4651
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synaptotagmins at the endoplasmic reticulum-plasma membrane contact sites maintain
  diacylglycerol homeostasis during abiotic stress
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 33
year: '2021'
...
---
_id: '9447'
abstract:
- lang: eng
  text: 'Lithium bis(trifluoromethylsulfonyl)imide (LiTFSI) based water-in-salt electrolytes
    (WiSEs) has recently emerged as a new promising class of electrolytes, primarily
    owing to their wide electrochemical stability windows (~3–4 V), that by far exceed
    the thermodynamic stability window of water (1.23 V). Upon increasing the salt
    concentration towards superconcentration the onset of the oxygen evolution reaction
    (OER) shifts more significantly than the hydrogen evolution reaction (HER) does.
    The OER shift has been explained by the accumulation of hydrophobic anions blocking
    water access to the electrode surface, hence by double layer theory. Here we demonstrate
    that the processes during oxidation are much more complex, involving OER, carbon
    and salt decomposition by OER intermediates, and salt precipitation upon local
    oversaturation. The positive shift in the onset potential of oxidation currents
    was elucidated by combining several advanced analysis techniques: rotating ring-disk
    electrode voltammetry, online electrochemical mass spectrometry, and X-ray photoelectron
    spectroscopy, using both dilute and superconcentrated electrolytes. The results
    demonstrate the importance of reactive OER intermediates and surface films for
    electrolyte and electrode stability and motivate further studies of the nature
    of the electrode.'
article_number: '050550'
article_processing_charge: No
author:
- first_name: Marion
  full_name: Maffre, Marion
  last_name: Maffre
- first_name: Roza
  full_name: Bouchal, Roza
  last_name: Bouchal
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Niklas
  full_name: Lindahl, Niklas
  last_name: Lindahl
- first_name: Patrik
  full_name: Johansson, Patrik
  last_name: Johansson
- first_name: Frédéric
  full_name: Favier, Frédéric
  last_name: Favier
- first_name: Olivier
  full_name: Fontaine, Olivier
  last_name: Fontaine
- first_name: Daniel
  full_name: Bélanger, Daniel
  last_name: Bélanger
citation:
  ama: Maffre M, Bouchal R, Freunberger SA, et al. Investigation of electrochemical
    and chemical processes occurring at positive potentials in “Water-in-Salt” electrolytes.
    <i>Journal of The Electrochemical Society</i>. 2021;168(5). doi:<a href="https://doi.org/10.1149/1945-7111/ac0300">10.1149/1945-7111/ac0300</a>
  apa: Maffre, M., Bouchal, R., Freunberger, S. A., Lindahl, N., Johansson, P., Favier,
    F., … Bélanger, D. (2021). Investigation of electrochemical and chemical processes
    occurring at positive potentials in “Water-in-Salt” electrolytes. <i>Journal of
    The Electrochemical Society</i>. IOP Publishing. <a href="https://doi.org/10.1149/1945-7111/ac0300">https://doi.org/10.1149/1945-7111/ac0300</a>
  chicago: Maffre, Marion, Roza Bouchal, Stefan Alexander Freunberger, Niklas Lindahl,
    Patrik Johansson, Frédéric Favier, Olivier Fontaine, and Daniel Bélanger. “Investigation
    of Electrochemical and Chemical Processes Occurring at Positive Potentials in
    ‘Water-in-Salt’ Electrolytes.” <i>Journal of The Electrochemical Society</i>.
    IOP Publishing, 2021. <a href="https://doi.org/10.1149/1945-7111/ac0300">https://doi.org/10.1149/1945-7111/ac0300</a>.
  ieee: M. Maffre <i>et al.</i>, “Investigation of electrochemical and chemical processes
    occurring at positive potentials in ‘Water-in-Salt’ electrolytes,” <i>Journal
    of The Electrochemical Society</i>, vol. 168, no. 5. IOP Publishing, 2021.
  ista: Maffre M, Bouchal R, Freunberger SA, Lindahl N, Johansson P, Favier F, Fontaine
    O, Bélanger D. 2021. Investigation of electrochemical and chemical processes occurring
    at positive potentials in “Water-in-Salt” electrolytes. Journal of The Electrochemical
    Society. 168(5), 050550.
  mla: Maffre, Marion, et al. “Investigation of Electrochemical and Chemical Processes
    Occurring at Positive Potentials in ‘Water-in-Salt’ Electrolytes.” <i>Journal
    of The Electrochemical Society</i>, vol. 168, no. 5, 050550, IOP Publishing, 2021,
    doi:<a href="https://doi.org/10.1149/1945-7111/ac0300">10.1149/1945-7111/ac0300</a>.
  short: M. Maffre, R. Bouchal, S.A. Freunberger, N. Lindahl, P. Johansson, F. Favier,
    O. Fontaine, D. Bélanger, Journal of The Electrochemical Society 168 (2021).
date_created: 2021-06-03T09:58:38Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2024-10-21T06:02:10Z
day: '01'
department:
- _id: StFr
doi: 10.1149/1945-7111/ac0300
external_id:
  isi:
  - '000657724200001'
intvolume: '       168'
isi: 1
issue: '5'
keyword:
- Renewable Energy
- Sustainability and the Environment
- Electrochemistry
- Materials Chemistry
- Electronic
- Optical and Magnetic Materials
- Surfaces
- Coatings and Films
- Condensed Matter Physics
language:
- iso: eng
month: '05'
oa_version: None
publication: Journal of The Electrochemical Society
publication_identifier:
  eissn:
  - 1945-7111
  issn:
  - 0013-4651
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Investigation of electrochemical and chemical processes occurring at positive
  potentials in “Water-in-Salt” electrolytes
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 168
year: '2021'
...
---
_id: '9462'
abstract:
- lang: eng
  text: We consider a system of N trapped bosons with repulsive interactions in a
    combined semiclassical mean-field limit at positive temperature. We show that
    the free energy is well approximated by the minimum of the Hartree free energy
    functional – a natural extension of the Hartree energy functional to positive
    temperatures. The Hartree free energy functional converges in the same limit to
    a semiclassical free energy functional, and we show that the system displays Bose–Einstein
    condensation if and only if it occurs in the semiclassical free energy functional.
    This allows us to show that for weak coupling the critical temperature decreases
    due to the repulsive interactions.
acknowledgement: Funding from the European Union's Horizon 2020 research and innovation
  programme under the ERC grant agreement No 694227 (R.S.) and under the Marie Sklodowska-Curie
  grant agreement No 836146 (A.D.) is gratefully acknowledged. A.D. acknowledges support
  of the Swiss National Science Foundation through the Ambizione grant PZ00P2 185851.
article_number: '109096'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Andreas
  full_name: Deuchert, Andreas
  last_name: Deuchert
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Deuchert A, Seiringer R. Semiclassical approximation and critical temperature
    shift for weakly interacting trapped bosons. <i>Journal of Functional Analysis</i>.
    2021;281(6). doi:<a href="https://doi.org/10.1016/j.jfa.2021.109096">10.1016/j.jfa.2021.109096</a>
  apa: Deuchert, A., &#38; Seiringer, R. (2021). Semiclassical approximation and critical
    temperature shift for weakly interacting trapped bosons. <i>Journal of Functional
    Analysis</i>. Elsevier. <a href="https://doi.org/10.1016/j.jfa.2021.109096">https://doi.org/10.1016/j.jfa.2021.109096</a>
  chicago: Deuchert, Andreas, and Robert Seiringer. “Semiclassical Approximation and
    Critical Temperature Shift for Weakly Interacting Trapped Bosons.” <i>Journal
    of Functional Analysis</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.jfa.2021.109096">https://doi.org/10.1016/j.jfa.2021.109096</a>.
  ieee: A. Deuchert and R. Seiringer, “Semiclassical approximation and critical temperature
    shift for weakly interacting trapped bosons,” <i>Journal of Functional Analysis</i>,
    vol. 281, no. 6. Elsevier, 2021.
  ista: Deuchert A, Seiringer R. 2021. Semiclassical approximation and critical temperature
    shift for weakly interacting trapped bosons. Journal of Functional Analysis. 281(6),
    109096.
  mla: Deuchert, Andreas, and Robert Seiringer. “Semiclassical Approximation and Critical
    Temperature Shift for Weakly Interacting Trapped Bosons.” <i>Journal of Functional
    Analysis</i>, vol. 281, no. 6, 109096, Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.jfa.2021.109096">10.1016/j.jfa.2021.109096</a>.
  short: A. Deuchert, R. Seiringer, Journal of Functional Analysis 281 (2021).
date_created: 2021-06-06T22:01:28Z
date_published: 2021-09-15T00:00:00Z
date_updated: 2025-04-14T07:26:53Z
day: '15'
department:
- _id: RoSe
doi: 10.1016/j.jfa.2021.109096
ec_funded: 1
external_id:
  arxiv:
  - '2009.00992'
  isi:
  - '000656508600008'
intvolume: '       281'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2009.00992
month: '09'
oa: 1
oa_version: Preprint
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
publication: Journal of Functional Analysis
publication_identifier:
  eissn:
  - 1096-0783
  issn:
  - 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Semiclassical approximation and critical temperature shift for weakly interacting
  trapped bosons
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 281
year: '2021'
...
---
_id: '9464'
abstract:
- lang: eng
  text: We firstly introduce the self-assembled growth of highly uniform Ge quantum
    wires with controllable position, distance and length on patterned Si (001) substrates.
    We then present the electrically tunable strong spin-orbit coupling, the first
    Ge hole spin qubit and ultrafast operation of hole spin qubit in the Ge/Si quantum
    wires.
acknowledgement: This work was supported by the National Key R&D Program of China
  (Grant No. 2016YFA0301700) and the ERC Starting Grant no. 335497.
article_number: '9420817'
article_processing_charge: No
author:
- first_name: Fei
  full_name: Gao, Fei
  last_name: Gao
- first_name: Jie Yin
  full_name: Zhang, Jie Yin
  last_name: Zhang
- first_name: Jian Huan
  full_name: Wang, Jian Huan
  last_name: Wang
- first_name: Ming
  full_name: Ming, Ming
  last_name: Ming
- first_name: Tina
  full_name: Wang, Tina
  last_name: Wang
- first_name: Jian Jun
  full_name: Zhang, Jian Jun
  last_name: Zhang
- first_name: Hannes
  full_name: Watzinger, Hannes
  id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
  last_name: Watzinger
- first_name: Josip
  full_name: Kukucka, Josip
  id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
  last_name: Kukucka
- first_name: Lada
  full_name: Vukušić, Lada
  id: 31E9F056-F248-11E8-B48F-1D18A9856A87
  last_name: Vukušić
  orcid: 0000-0003-2424-8636
- first_name: Georgios
  full_name: Katsaros, Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
- first_name: Ke
  full_name: Wang, Ke
  last_name: Wang
- first_name: Gang
  full_name: Xu, Gang
  last_name: Xu
- first_name: Hai Ou
  full_name: Li, Hai Ou
  last_name: Li
- first_name: Guo Ping
  full_name: Guo, Guo Ping
  last_name: Guo
citation:
  ama: 'Gao F, Zhang JY, Wang JH, et al. Ge/Si quantum wires for quantum computing.
    In: <i>2021 5th IEEE Electron Devices Technology and Manufacturing Conference,
    EDTM 2021</i>. IEEE; 2021. doi:<a href="https://doi.org/10.1109/EDTM50988.2021.9420817">10.1109/EDTM50988.2021.9420817</a>'
  apa: 'Gao, F., Zhang, J. Y., Wang, J. H., Ming, M., Wang, T., Zhang, J. J., … Guo,
    G. P. (2021). Ge/Si quantum wires for quantum computing. In <i>2021 5th IEEE Electron
    Devices Technology and Manufacturing Conference, EDTM 2021</i>. Virtual, Online:
    IEEE. <a href="https://doi.org/10.1109/EDTM50988.2021.9420817">https://doi.org/10.1109/EDTM50988.2021.9420817</a>'
  chicago: Gao, Fei, Jie Yin Zhang, Jian Huan Wang, Ming Ming, Tina Wang, Jian Jun
    Zhang, Hannes Watzinger, et al. “Ge/Si Quantum Wires for Quantum Computing.” In
    <i>2021 5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM
    2021</i>. IEEE, 2021. <a href="https://doi.org/10.1109/EDTM50988.2021.9420817">https://doi.org/10.1109/EDTM50988.2021.9420817</a>.
  ieee: F. Gao <i>et al.</i>, “Ge/Si quantum wires for quantum computing,” in <i>2021
    5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021</i>,
    Virtual, Online, 2021.
  ista: 'Gao F, Zhang JY, Wang JH, Ming M, Wang T, Zhang JJ, Watzinger H, Kukucka
    J, Vukušić L, Katsaros G, Wang K, Xu G, Li HO, Guo GP. 2021. Ge/Si quantum wires
    for quantum computing. 2021 5th IEEE Electron Devices Technology and Manufacturing
    Conference, EDTM 2021. EDTM: IEEE Electron Devices Technology and Manufacturing
    Conference, 9420817.'
  mla: Gao, Fei, et al. “Ge/Si Quantum Wires for Quantum Computing.” <i>2021 5th IEEE
    Electron Devices Technology and Manufacturing Conference, EDTM 2021</i>, 9420817,
    IEEE, 2021, doi:<a href="https://doi.org/10.1109/EDTM50988.2021.9420817">10.1109/EDTM50988.2021.9420817</a>.
  short: F. Gao, J.Y. Zhang, J.H. Wang, M. Ming, T. Wang, J.J. Zhang, H. Watzinger,
    J. Kukucka, L. Vukušić, G. Katsaros, K. Wang, G. Xu, H.O. Li, G.P. Guo, in:, 2021
    5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021,
    IEEE, 2021.
conference:
  end_date: 2021-04-11
  location: Virtual, Online
  name: 'EDTM: IEEE Electron Devices Technology and Manufacturing Conference'
  start_date: 2021-04-08
date_created: 2021-06-06T22:01:29Z
date_published: 2021-04-08T00:00:00Z
date_updated: 2024-10-22T09:41:03Z
day: '08'
department:
- _id: GeKa
doi: 10.1109/EDTM50988.2021.9420817
ec_funded: 1
external_id:
  isi:
  - '000675595800006'
isi: 1
language:
- iso: eng
month: '04'
oa_version: None
project:
- _id: 25517E86-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '335497'
  name: Towards Spin qubits and Majorana fermions in Germanium self assembled hut-wires
publication: 2021 5th IEEE Electron Devices Technology and Manufacturing Conference,
  EDTM 2021
publication_identifier:
  isbn:
  - '9781728181769'
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ge/Si quantum wires for quantum computing
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9465'
abstract:
- lang: eng
  text: "Given a locally finite set \U0001D44B⊆ℝ\U0001D451 and an integer \U0001D458≥0,
    we consider the function \U0001D430\U0001D458:Del\U0001D458(\U0001D44B)→ℝ on the
    dual of the order-k Voronoi tessellation, whose sublevel sets generalize the notion
    of alpha shapes from order-1 to order-k (Edelsbrunner et al. in IEEE Trans Inf
    Theory IT-29:551–559, 1983; Krasnoshchekov and Polishchuk in Inf Process Lett
    114:76–83, 2014). While this function is not necessarily generalized discrete
    Morse, in the sense of Forman (Adv Math 134:90–145, 1998) and Freij (Discrete
    Math 309:3821–3829, 2009), we prove that it satisfies similar properties so that
    its increments can be meaningfully classified into critical and non-critical steps.
    This result extends to the case of weighted points and sheds light on k-fold covers
    with balls in Euclidean space."
article_number: '15'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Anton
  full_name: Nikitenko, Anton
  id: 3E4FF1BA-F248-11E8-B48F-1D18A9856A87
  last_name: Nikitenko
  orcid: 0000-0002-0659-3201
- first_name: Georg F
  full_name: Osang, Georg F
  id: 464B40D6-F248-11E8-B48F-1D18A9856A87
  last_name: Osang
  orcid: 0000-0002-8882-5116
citation:
  ama: Edelsbrunner H, Nikitenko A, Osang GF. A step in the Delaunay mosaic of order
    k. <i>Journal of Geometry</i>. 2021;112(1). doi:<a href="https://doi.org/10.1007/s00022-021-00577-4">10.1007/s00022-021-00577-4</a>
  apa: Edelsbrunner, H., Nikitenko, A., &#38; Osang, G. F. (2021). A step in the Delaunay
    mosaic of order k. <i>Journal of Geometry</i>. Springer Nature. <a href="https://doi.org/10.1007/s00022-021-00577-4">https://doi.org/10.1007/s00022-021-00577-4</a>
  chicago: Edelsbrunner, Herbert, Anton Nikitenko, and Georg F Osang. “A Step in the
    Delaunay Mosaic of Order K.” <i>Journal of Geometry</i>. Springer Nature, 2021.
    <a href="https://doi.org/10.1007/s00022-021-00577-4">https://doi.org/10.1007/s00022-021-00577-4</a>.
  ieee: H. Edelsbrunner, A. Nikitenko, and G. F. Osang, “A step in the Delaunay mosaic
    of order k,” <i>Journal of Geometry</i>, vol. 112, no. 1. Springer Nature, 2021.
  ista: Edelsbrunner H, Nikitenko A, Osang GF. 2021. A step in the Delaunay mosaic
    of order k. Journal of Geometry. 112(1), 15.
  mla: Edelsbrunner, Herbert, et al. “A Step in the Delaunay Mosaic of Order K.” <i>Journal
    of Geometry</i>, vol. 112, no. 1, 15, Springer Nature, 2021, doi:<a href="https://doi.org/10.1007/s00022-021-00577-4">10.1007/s00022-021-00577-4</a>.
  short: H. Edelsbrunner, A. Nikitenko, G.F. Osang, Journal of Geometry 112 (2021).
corr_author: '1'
date_created: 2021-06-06T22:01:29Z
date_published: 2021-04-01T00:00:00Z
date_updated: 2025-07-10T12:01:46Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00022-021-00577-4
file:
- access_level: open_access
  checksum: e52a832f1def52a2b23d21bcc09e646f
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-06-11T13:16:26Z
  date_updated: 2021-06-11T13:16:26Z
  file_id: '9544'
  file_name: 2021_Geometry_Edelsbrunner.pdf
  file_size: 694706
  relation: main_file
  success: 1
file_date_updated: 2021-06-11T13:16:26Z
has_accepted_license: '1'
intvolume: '       112'
issue: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: Journal of Geometry
publication_identifier:
  eissn:
  - 1420-8997
  issn:
  - 0047-2468
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A step in the Delaunay mosaic of order k
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 112
year: '2021'
...
---
_id: '9467'
abstract:
- lang: eng
  text: "Turbulence in the flow of fluid through a pipe can be suppressed by buoyancy
    forces. As the suppression of turbulence leads to severe heat transfer deterioration,
    this is an important and undesirable phenomenon in both heating and cooling applications.
    Vertical flow is often considered, as the axial buoyancy force can help drive
    the flow. With heating measured by the buoyancy parameter \U0001D436, our direct
    numerical simulations show that shear-driven turbulence may either be completely
    laminarised or it transitions to a relatively quiescent convection-driven state.
    Buoyancy forces cause a flattening of the base flow profile, which in isothermal
    pipe flow has recently been linked to complete suppression of turbulence (Kühnen
    et al., Nat. Phys., vol. 14, 2018, pp. 386–390), and the flattened laminar base
    profile has enhanced nonlinear stability (Marensi et al., J. Fluid Mech., vol.
    863, 2019, pp. 50–875). In agreement with these findings, the nonlinear lower-branch
    travelling-wave solution analysed here, which is believed to mediate transition
    to turbulence in isothermal pipe flow, is shown to be suppressed by buoyancy.
    A linear instability of the laminar base flow is responsible for the appearance
    of the relatively quiescent convection driven state for \U0001D436≳4 across the
    range of Reynolds numbers considered. In the suppression of turbulence, however,
    i.e. in the transition from turbulence, we find clearer association with the analysis
    of He et al. (J. Fluid Mech., vol. 809, 2016, pp. 31–71) than with the above dynamical
    systems approach, which describes better the transition to turbulence. The laminarisation
    criterion He et al. propose, based on an apparent Reynolds number of the flow
    as measured by its driving pressure gradient, is found to capture the critical
    \U0001D436=\U0001D436\U0001D450\U0001D45F(\U0001D445\U0001D452) above which the
    flow will be laminarised or switch to the convection-driven type. Our analysis
    suggests that it is the weakened rolls, rather than the streaks, which appear
    to be critical for laminarisation."
acknowledgement: The anonymous referees are kindly acknowledged for their useful suggestions
  andcomments.
article_number: A17
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Elena
  full_name: Marensi, Elena
  id: 0BE7553A-1004-11EA-B805-18983DDC885E
  last_name: Marensi
  orcid: 0000-0001-7173-4923
- first_name: Shuisheng
  full_name: He, Shuisheng
  last_name: He
- first_name: Ashley P.
  full_name: Willis, Ashley P.
  last_name: Willis
citation:
  ama: Marensi E, He S, Willis AP. Suppression of turbulence and travelling waves
    in a vertical heated pipe. <i>Journal of Fluid Mechanics</i>. 2021;919. doi:<a
    href="https://doi.org/10.1017/jfm.2021.371">10.1017/jfm.2021.371</a>
  apa: Marensi, E., He, S., &#38; Willis, A. P. (2021). Suppression of turbulence
    and travelling waves in a vertical heated pipe. <i>Journal of Fluid Mechanics</i>.
    Cambridge University Press. <a href="https://doi.org/10.1017/jfm.2021.371">https://doi.org/10.1017/jfm.2021.371</a>
  chicago: Marensi, Elena, Shuisheng He, and Ashley P. Willis. “Suppression of Turbulence
    and Travelling Waves in a Vertical Heated Pipe.” <i>Journal of Fluid Mechanics</i>.
    Cambridge University Press, 2021. <a href="https://doi.org/10.1017/jfm.2021.371">https://doi.org/10.1017/jfm.2021.371</a>.
  ieee: E. Marensi, S. He, and A. P. Willis, “Suppression of turbulence and travelling
    waves in a vertical heated pipe,” <i>Journal of Fluid Mechanics</i>, vol. 919.
    Cambridge University Press, 2021.
  ista: Marensi E, He S, Willis AP. 2021. Suppression of turbulence and travelling
    waves in a vertical heated pipe. Journal of Fluid Mechanics. 919, A17.
  mla: Marensi, Elena, et al. “Suppression of Turbulence and Travelling Waves in a
    Vertical Heated Pipe.” <i>Journal of Fluid Mechanics</i>, vol. 919, A17, Cambridge
    University Press, 2021, doi:<a href="https://doi.org/10.1017/jfm.2021.371">10.1017/jfm.2021.371</a>.
  short: E. Marensi, S. He, A.P. Willis, Journal of Fluid Mechanics 919 (2021).
corr_author: '1'
date_created: 2021-06-06T22:01:30Z
date_published: 2021-07-25T00:00:00Z
date_updated: 2025-07-10T12:01:47Z
day: '25'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1017/jfm.2021.371
external_id:
  arxiv:
  - '2008.13486'
  isi:
  - '000653785000001'
file:
- access_level: open_access
  checksum: 867ad077e45c181c2c5ec1311ba27c41
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-08-03T09:53:28Z
  date_updated: 2021-08-03T09:53:28Z
  file_id: '9766'
  file_name: 2021_JournalFluidMechanics_Marensi.pdf
  file_size: 4087358
  relation: main_file
  success: 1
file_date_updated: 2021-08-03T09:53:28Z
has_accepted_license: '1'
intvolume: '       919'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: Journal of Fluid Mechanics
publication_identifier:
  eissn:
  - 1469-7645
  issn:
  - 0022-1120
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Suppression of turbulence and travelling waves in a vertical heated pipe
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 919
year: '2021'
...
---
_id: '9468'
abstract:
- lang: eng
  text: "Motivated by the successful application of geometry to proving the Harary--Hill
    conjecture for “pseudolinear” drawings of $K_n$, we introduce “pseudospherical”
    drawings of graphs. A spherical drawing of a graph $G$ is a drawing in the unit
    sphere $\\mathbb{S}^2$ in which the vertices of $G$ are represented as points---no
    three on a great circle---and the edges of $G$ are shortest-arcs in $\\mathbb{S}^2$
    connecting pairs of vertices. Such a drawing has three properties: (1) every edge
    $e$ is contained in a simple closed curve $\\gamma_e$ such that the only vertices
    in $\\gamma_e$ are the ends of $e$; (2) if $e\\ne f$, then $\\gamma_e\\cap\\gamma_f$
    has precisely two crossings; and (3) if $e\\ne f$, then $e$ intersects $\\gamma_f$
    at most once, in either a crossing or an end of $e$. We use properties (1)--(3)
    to define a pseudospherical drawing of $G$. Our main result is that for the complete
    graph, properties (1)--(3) are equivalent to the same three properties but with
    “precisely two crossings” in (2) replaced by “at most two crossings.” The proof
    requires a result in the geometric transversal theory of arrangements of pseudocircles.
    This is proved using the surprising result that the absence of special arcs (coherent
    spirals) in an arrangement of simple closed curves characterizes the fact that
    any two curves in the arrangement have at most two crossings. Our studies provide
    the necessary ideas for exhibiting a drawing of $K_{10}$ that has no extension
    to an arrangement of pseudocircles and a drawing of $K_9$ that does extend to
    an arrangement of pseudocircles, but no such extension has all pairs of pseudocircles
    crossing twice.\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Alan M
  full_name: Arroyo Guevara, Alan M
  id: 3207FDC6-F248-11E8-B48F-1D18A9856A87
  last_name: Arroyo Guevara
  orcid: 0000-0003-2401-8670
- first_name: R. Bruce
  full_name: Richter, R. Bruce
  last_name: Richter
- first_name: Matthew
  full_name: Sunohara, Matthew
  last_name: Sunohara
citation:
  ama: Arroyo Guevara AM, Richter RB, Sunohara M. Extending drawings of complete graphs
    into arrangements of pseudocircles. <i>SIAM Journal on Discrete Mathematics</i>.
    2021;35(2):1050-1076. doi:<a href="https://doi.org/10.1137/20M1313234">10.1137/20M1313234</a>
  apa: Arroyo Guevara, A. M., Richter, R. B., &#38; Sunohara, M. (2021). Extending
    drawings of complete graphs into arrangements of pseudocircles. <i>SIAM Journal
    on Discrete Mathematics</i>. Society for Industrial and Applied Mathematics. <a
    href="https://doi.org/10.1137/20M1313234">https://doi.org/10.1137/20M1313234</a>
  chicago: Arroyo Guevara, Alan M, R. Bruce Richter, and Matthew Sunohara. “Extending
    Drawings of Complete Graphs into Arrangements of Pseudocircles.” <i>SIAM Journal
    on Discrete Mathematics</i>. Society for Industrial and Applied Mathematics, 2021.
    <a href="https://doi.org/10.1137/20M1313234">https://doi.org/10.1137/20M1313234</a>.
  ieee: A. M. Arroyo Guevara, R. B. Richter, and M. Sunohara, “Extending drawings
    of complete graphs into arrangements of pseudocircles,” <i>SIAM Journal on Discrete
    Mathematics</i>, vol. 35, no. 2. Society for Industrial and Applied Mathematics,
    pp. 1050–1076, 2021.
  ista: Arroyo Guevara AM, Richter RB, Sunohara M. 2021. Extending drawings of complete
    graphs into arrangements of pseudocircles. SIAM Journal on Discrete Mathematics.
    35(2), 1050–1076.
  mla: Arroyo Guevara, Alan M., et al. “Extending Drawings of Complete Graphs into
    Arrangements of Pseudocircles.” <i>SIAM Journal on Discrete Mathematics</i>, vol.
    35, no. 2, Society for Industrial and Applied Mathematics, 2021, pp. 1050–76,
    doi:<a href="https://doi.org/10.1137/20M1313234">10.1137/20M1313234</a>.
  short: A.M. Arroyo Guevara, R.B. Richter, M. Sunohara, SIAM Journal on Discrete
    Mathematics 35 (2021) 1050–1076.
date_created: 2021-06-06T22:01:30Z
date_published: 2021-05-20T00:00:00Z
date_updated: 2025-04-14T07:43:46Z
day: '20'
department:
- _id: UlWa
doi: 10.1137/20M1313234
ec_funded: 1
external_id:
  arxiv:
  - '2001.06053'
  isi:
  - '000674142200022'
intvolume: '        35'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2001.06053
month: '05'
oa: 1
oa_version: Preprint
page: 1050-1076
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: SIAM Journal on Discrete Mathematics
publication_identifier:
  issn:
  - 0895-4801
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extending drawings of complete graphs into arrangements of pseudocircles
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2021'
...
---
_id: '9540'
abstract:
- lang: eng
  text: The hexameric AAA-ATPase Drg1 is a key factor in eukaryotic ribosome biogenesis
    and initiates cytoplasmic maturation of the large ribosomal subunit by releasing
    the shuttling maturation factor Rlp24. Drg1 monomers contain two AAA-domains (D1
    and D2) that act in a concerted manner. Rlp24 release is inhibited by the drug
    diazaborine which blocks ATP hydrolysis in D2. The mode of inhibition was unknown.
    Here we show the first cryo-EM structure of Drg1 revealing the inhibitory mechanism.
    Diazaborine forms a covalent bond to the 2′-OH of the nucleotide in D2, explaining
    its specificity for this site. As a consequence, the D2 domain is locked in a
    rigid, inactive state, stalling the whole Drg1 hexamer. Resistance mechanisms
    identified include abolished drug binding and altered positioning of the nucleotide.
    Our results suggest nucleotide-modifying compounds as potential novel inhibitors
    for AAA-ATPases.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: We are deeply grateful to the late Gregor Högenauer who built the
  foundation for this study with his visionary work on the inhibitor diazaborine and
  its bacterial target. We thank Rolf Breinbauer for insightful discussions on boron
  chemistry. We thank Anton Meinhart and Tim Clausen for the valuable discussion of
  the manuscript. We are indebted to Thomas Köcher for the MS measurement of the diazaborine-ATPγS
  adduct. We thank the team of the VBCF for support during early phases of this work
  and the IST Austria Electron Microscopy Facility for providing equipment. The lab
  of D.H. is supported by Boehringer Ingelheim. The work was funded by FWF projects
  P32536 and P32977 (to H.B.).
article_number: '3483'
article_processing_charge: No
article_type: original
author:
- first_name: Michael
  full_name: Prattes, Michael
  last_name: Prattes
- first_name: Irina
  full_name: Grishkovskaya, Irina
  last_name: Grishkovskaya
- first_name: Victor-Valentin
  full_name: Hodirnau, Victor-Valentin
  id: 3661B498-F248-11E8-B48F-1D18A9856A87
  last_name: Hodirnau
  orcid: 0000-0003-3904-947X
- first_name: Ingrid
  full_name: Rössler, Ingrid
  last_name: Rössler
- first_name: Isabella
  full_name: Klein, Isabella
  last_name: Klein
- first_name: Christina
  full_name: Hetzmannseder, Christina
  last_name: Hetzmannseder
- first_name: Gertrude
  full_name: Zisser, Gertrude
  last_name: Zisser
- first_name: Christian C.
  full_name: Gruber, Christian C.
  last_name: Gruber
- first_name: Karl
  full_name: Gruber, Karl
  last_name: Gruber
- first_name: David
  full_name: Haselbach, David
  last_name: Haselbach
- first_name: Helmut
  full_name: Bergler, Helmut
  last_name: Bergler
citation:
  ama: Prattes M, Grishkovskaya I, Hodirnau V-V, et al. Structural basis for inhibition
    of the AAA-ATPase Drg1 by diazaborine. <i>Nature Communications</i>. 2021;12(1).
    doi:<a href="https://doi.org/10.1038/s41467-021-23854-x">10.1038/s41467-021-23854-x</a>
  apa: Prattes, M., Grishkovskaya, I., Hodirnau, V.-V., Rössler, I., Klein, I., Hetzmannseder,
    C., … Bergler, H. (2021). Structural basis for inhibition of the AAA-ATPase Drg1
    by diazaborine. <i>Nature Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-021-23854-x">https://doi.org/10.1038/s41467-021-23854-x</a>
  chicago: Prattes, Michael, Irina Grishkovskaya, Victor-Valentin Hodirnau, Ingrid
    Rössler, Isabella Klein, Christina Hetzmannseder, Gertrude Zisser, et al. “Structural
    Basis for Inhibition of the AAA-ATPase Drg1 by Diazaborine.” <i>Nature Communications</i>.
    Springer Nature, 2021. <a href="https://doi.org/10.1038/s41467-021-23854-x">https://doi.org/10.1038/s41467-021-23854-x</a>.
  ieee: M. Prattes <i>et al.</i>, “Structural basis for inhibition of the AAA-ATPase
    Drg1 by diazaborine,” <i>Nature Communications</i>, vol. 12, no. 1. Springer Nature,
    2021.
  ista: Prattes M, Grishkovskaya I, Hodirnau V-V, Rössler I, Klein I, Hetzmannseder
    C, Zisser G, Gruber CC, Gruber K, Haselbach D, Bergler H. 2021. Structural basis
    for inhibition of the AAA-ATPase Drg1 by diazaborine. Nature Communications. 12(1),
    3483.
  mla: Prattes, Michael, et al. “Structural Basis for Inhibition of the AAA-ATPase
    Drg1 by Diazaborine.” <i>Nature Communications</i>, vol. 12, no. 1, 3483, Springer
    Nature, 2021, doi:<a href="https://doi.org/10.1038/s41467-021-23854-x">10.1038/s41467-021-23854-x</a>.
  short: M. Prattes, I. Grishkovskaya, V.-V. Hodirnau, I. Rössler, I. Klein, C. Hetzmannseder,
    G. Zisser, C.C. Gruber, K. Gruber, D. Haselbach, H. Bergler, Nature Communications
    12 (2021).
date_created: 2021-06-10T14:57:45Z
date_published: 2021-06-09T00:00:00Z
date_updated: 2024-10-21T06:02:01Z
day: '09'
ddc:
- '570'
department:
- _id: EM-Fac
doi: 10.1038/s41467-021-23854-x
external_id:
  isi:
  - '000664874700014'
  pmid:
  - '34108481'
file:
- access_level: open_access
  checksum: 40fc24c1310930990b52a8ad1142ee97
  content_type: application/pdf
  creator: cziletti
  date_created: 2021-06-15T18:55:59Z
  date_updated: 2021-06-15T18:55:59Z
  file_id: '9556'
  file_name: 2021_NatureComm_Prattes.pdf
  file_size: 3397292
  relation: main_file
  success: 1
file_date_updated: 2021-06-15T18:55:59Z
has_accepted_license: '1'
intvolume: '        12'
isi: 1
issue: '1'
keyword:
- General Biochemistry
- Genetics and Molecular Biology
- General Physics and Astronomy
- General Chemistry
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 12
year: '2021'
...
---
_id: '9541'
abstract:
- lang: eng
  text: The Massively Parallel Computation (MPC) model is an emerging model that distills
    core aspects of distributed and parallel computation, developed as a tool to solve
    combinatorial (typically graph) problems in systems of many machines with limited
    space. Recent work has focused on the regime in which machines have sublinear
    (in n, the number of nodes in the input graph) space, with randomized algorithms
    presented for the fundamental problems of Maximal Matching and Maximal Independent
    Set. However, there have been no prior corresponding deterministic algorithms.
    A major challenge underlying the sublinear space setting is that the local space
    of each machine might be too small to store all edges incident to a single node.
    This poses a considerable obstacle compared to classical models in which each
    node is assumed to know and have easy access to its incident edges. To overcome
    this barrier, we introduce a new graph sparsification technique that deterministically
    computes a low-degree subgraph, with the additional property that solving the
    problem on this subgraph provides significant progress towards solving the problem
    for the original input graph. Using this framework to derandomize the well-known
    algorithm of Luby [SICOMP’86], we obtain O(log Δ + log log n)-round deterministic
    MPC algorithms for solving the problems of Maximal Matching and Maximal Independent
    Set with O(nɛ) space on each machine for any constant ɛ > 0. These algorithms
    also run in O(log Δ) rounds in the closely related model of CONGESTED CLIQUE,
    improving upon the state-of-the-art bound of O(log 2Δ) rounds by Censor-Hillel
    et al. [DISC’17].
acknowledgement: "Institute of Science and Technology Austria (IST Austria). Email:
  peter.davies@ist.ac.at. Work partially\r\ndone at the Department of Computer Science
  and Centre for Discrete Mathematics and its Applications (DIMAP),University of Warwick.
  Research partially supported by the European Union’s Horizon 2020 research and innovation
  programme under the Marie Skłodowska-Curie grant agreement No 754411, the Centre
  for Discrete Mathematics and its Applications, a Weizmann-UK Making Connections
  Grant, and EPSRC award EP/N011163/1."
article_number: '16'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Artur
  full_name: Czumaj, Artur
  last_name: Czumaj
- first_name: Peter
  full_name: Davies, Peter
  id: 11396234-BB50-11E9-B24C-90FCE5697425
  last_name: Davies
  orcid: 0000-0002-5646-9524
- first_name: Merav
  full_name: Parter, Merav
  last_name: Parter
citation:
  ama: Czumaj A, Davies P, Parter M. Graph sparsification for derandomizing massively
    parallel computation with low space. <i>ACM Transactions on Algorithms</i>. 2021;17(2).
    doi:<a href="https://doi.org/10.1145/3451992">10.1145/3451992</a>
  apa: Czumaj, A., Davies, P., &#38; Parter, M. (2021). Graph sparsification for derandomizing
    massively parallel computation with low space. <i>ACM Transactions on Algorithms</i>.
    Association for Computing Machinery. <a href="https://doi.org/10.1145/3451992">https://doi.org/10.1145/3451992</a>
  chicago: Czumaj, Artur, Peter Davies, and Merav Parter. “Graph Sparsification for
    Derandomizing Massively Parallel Computation with Low Space.” <i>ACM Transactions
    on Algorithms</i>. Association for Computing Machinery, 2021. <a href="https://doi.org/10.1145/3451992">https://doi.org/10.1145/3451992</a>.
  ieee: A. Czumaj, P. Davies, and M. Parter, “Graph sparsification for derandomizing
    massively parallel computation with low space,” <i>ACM Transactions on Algorithms</i>,
    vol. 17, no. 2. Association for Computing Machinery, 2021.
  ista: Czumaj A, Davies P, Parter M. 2021. Graph sparsification for derandomizing
    massively parallel computation with low space. ACM Transactions on Algorithms.
    17(2), 16.
  mla: Czumaj, Artur, et al. “Graph Sparsification for Derandomizing Massively Parallel
    Computation with Low Space.” <i>ACM Transactions on Algorithms</i>, vol. 17, no.
    2, 16, Association for Computing Machinery, 2021, doi:<a href="https://doi.org/10.1145/3451992">10.1145/3451992</a>.
  short: A. Czumaj, P. Davies, M. Parter, ACM Transactions on Algorithms 17 (2021).
date_created: 2021-06-10T19:31:05Z
date_published: 2021-06-01T00:00:00Z
date_updated: 2025-04-15T06:54:47Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.1145/3451992
ec_funded: 1
external_id:
  arxiv:
  - '1912.05390'
  isi:
  - '000661311300006'
file:
- access_level: open_access
  checksum: a21c627683890c309a68f6389302c408
  content_type: application/pdf
  creator: pdavies
  date_created: 2021-06-10T19:33:56Z
  date_updated: 2021-06-10T19:33:56Z
  file_id: '9542'
  file_name: MISMM-arxiv.pdf
  file_size: 587404
  relation: main_file
  success: 1
file_date_updated: 2021-06-10T19:33:56Z
has_accepted_license: '1'
intvolume: '        17'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1912.05390
month: '06'
oa: 1
oa_version: Submitted Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: ACM Transactions on Algorithms
publication_identifier:
  eissn:
  - 1549-6333
  issn:
  - 1549-6325
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
  record:
  - id: '7802'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Graph sparsification for derandomizing massively parallel computation with
  low space
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2021'
...
---
_id: '9543'
abstract:
- lang: eng
  text: We consider the problem ofdistributed mean estimation (DME), in which n machines
    are each given a local d-dimensional vector xv∈Rd, and must cooperate to estimate
    the mean of their inputs μ=1n∑nv=1xv, while minimizing total communication cost.
    DME is a fundamental construct in distributed machine learning, and there has
    been considerable work on variants of this problem, especially in the context
    of distributed variance reduction for stochastic gradients in parallel SGD. Previous
    work typically assumes an upper bound on the norm of the input vectors, and achieves
    an error bound in terms of this norm. However, in many real applications, the
    input vectors are concentrated around the correct output μ, but μ itself has large
    norm. In such cases, previous output error bounds perform poorly. In this paper,
    we show that output error bounds need not depend on input norm. We provide a method
    of quantization which allows distributed mean estimation to be performed with
    solution quality dependent only on the distance between inputs, not on input norm,
    and show an analogous result for distributed variance reduction. The technique
    is based on a new connection with lattice theory. We also provide lower bounds
    showing that the communication to error trade-off of our algorithms is asymptotically
    optimal. As the lattices achieving optimal bounds under l2-norm can be computationally
    impractical, we also present an extension which leverages easy-to-use cubic lattices,
    and is loose only up to a logarithmic factor ind. We show experimentally that
    our method yields practical improvements for common applications, relative to
    prior approaches.
article_processing_charge: No
arxiv: 1
author:
- first_name: Peter
  full_name: Davies, Peter
  id: 11396234-BB50-11E9-B24C-90FCE5697425
  last_name: Davies
  orcid: 0000-0002-5646-9524
- first_name: Vijaykrishna
  full_name: Gurunanthan, Vijaykrishna
  last_name: Gurunanthan
- first_name: 'Niusha '
  full_name: 'Moshrefi, Niusha '
  id: 4db776ff-ce15-11eb-96e3-bc2b90b01c16
  last_name: Moshrefi
- first_name: Saleh
  full_name: Ashkboos, Saleh
  id: 0D0A9058-257B-11EA-A937-9341C3D8BC8A
  last_name: Ashkboos
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Davies P, Gurunanthan V, Moshrefi N, Ashkboos S, Alistarh D-A. New bounds
    for distributed mean estimation and variance reduction. In: <i>9th International
    Conference on Learning Representations</i>. ; 2021.'
  apa: Davies, P., Gurunanthan, V., Moshrefi, N., Ashkboos, S., &#38; Alistarh, D.-A.
    (2021). New bounds for distributed mean estimation and variance reduction. In
    <i>9th International Conference on Learning Representations</i>. Virtual.
  chicago: Davies, Peter, Vijaykrishna Gurunanthan, Niusha  Moshrefi, Saleh Ashkboos,
    and Dan-Adrian Alistarh. “New Bounds for Distributed Mean Estimation and Variance
    Reduction.” In <i>9th International Conference on Learning Representations</i>,
    2021.
  ieee: P. Davies, V. Gurunanthan, N. Moshrefi, S. Ashkboos, and D.-A. Alistarh, “New
    bounds for distributed mean estimation and variance reduction,” in <i>9th International
    Conference on Learning Representations</i>, Virtual, 2021.
  ista: 'Davies P, Gurunanthan V, Moshrefi N, Ashkboos S, Alistarh D-A. 2021. New
    bounds for distributed mean estimation and variance reduction. 9th International
    Conference on Learning Representations. ICLR: International Conference on Learning
    Representations.'
  mla: Davies, Peter, et al. “New Bounds for Distributed Mean Estimation and Variance
    Reduction.” <i>9th International Conference on Learning Representations</i>, 2021.
  short: P. Davies, V. Gurunanthan, N. Moshrefi, S. Ashkboos, D.-A. Alistarh, in:,
    9th International Conference on Learning Representations, 2021.
conference:
  end_date: 2021-05-07
  location: Virtual
  name: 'ICLR: International Conference on Learning Representations'
  start_date: 2021-05-03
corr_author: '1'
date_created: 2021-06-10T19:46:08Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2025-07-10T12:01:50Z
day: '01'
department:
- _id: DaAl
ec_funded: 1
external_id:
  arxiv:
  - '2002.09268'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://openreview.net/pdf?id=t86MwoUCCNe
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: 9th International Conference on Learning Representations
publication_status: published
quality_controlled: '1'
status: public
title: New bounds for distributed mean estimation and variance reduction
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9547'
abstract:
- lang: eng
  text: With the wider availability of full-color 3D printers, color-accurate 3D-print
    preparation has received increased attention. A key challenge lies in the inherent
    translucency of commonly used print materials that blurs out details of the color
    texture. Previous work tries to compensate for these scattering effects through
    strategic assignment of colored primary materials to printer voxels. To date,
    the highest-quality approach uses iterative optimization that relies on computationally
    expensive Monte Carlo light transport simulation to predict the surface appearance
    from subsurface scattering within a given print material distribution; that optimization,
    however, takes in the order of days on a single machine. In our work, we dramatically
    speed up the process by replacing the light transport simulation with a data-driven
    approach. Leveraging a deep neural network to predict the scattering within a
    highly heterogeneous medium, our method performs around two orders of magnitude
    faster than Monte Carlo rendering while yielding optimization results of similar
    quality level. The network is based on an established method from atmospheric
    cloud rendering, adapted to our domain and extended by a physically motivated
    weight sharing scheme that substantially reduces the network size. We analyze
    its performance in an end-to-end print preparation pipeline and compare quality
    and runtime to alternative approaches, and demonstrate its generalization to unseen
    geometry and material values. This for the first time enables full heterogenous
    material optimization for 3D-print preparation within time frames in the order
    of the actual printing time.
acknowledgement: We thank Sebastian Cucerca for processing and capturing the phys-cal
  printouts. This work was supported by the Charles University grant SVV-260588 and
  Czech Science Foundation grant 19-07626S. This project has received funding from
  the European Union’s Horizon 2020 research and innovation programme, under the Marie
  Skłodowska Curie grant agreements No 642841 (DISTRO) and No765911 (RealVision),
  and under the European Research Council grant agreement No 715767 (MATERIALIZABLE).
article_processing_charge: No
article_type: original
author:
- first_name: Tobias
  full_name: Rittig, Tobias
  last_name: Rittig
- first_name: Denis
  full_name: Sumin, Denis
  last_name: Sumin
- first_name: Vahid
  full_name: Babaei, Vahid
  last_name: Babaei
- first_name: Piotr
  full_name: Didyk, Piotr
  last_name: Didyk
- first_name: Alexey
  full_name: Voloboy, Alexey
  last_name: Voloboy
- first_name: Alexander
  full_name: Wilkie, Alexander
  last_name: Wilkie
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Karol
  full_name: Myszkowski, Karol
  last_name: Myszkowski
- first_name: Tim
  full_name: Weyrich, Tim
  last_name: Weyrich
- first_name: Jaroslav
  full_name: Křivánek, Jaroslav
  last_name: Křivánek
citation:
  ama: Rittig T, Sumin D, Babaei V, et al. Neural acceleration of scattering-aware
    color 3D printing. <i>Computer Graphics Forum</i>. 2021;40(2):205-219. doi:<a
    href="https://doi.org/10.1111/cgf.142626">10.1111/cgf.142626</a>
  apa: Rittig, T., Sumin, D., Babaei, V., Didyk, P., Voloboy, A., Wilkie, A., … Křivánek,
    J. (2021). Neural acceleration of scattering-aware color 3D printing. <i>Computer
    Graphics Forum</i>. Wiley. <a href="https://doi.org/10.1111/cgf.142626">https://doi.org/10.1111/cgf.142626</a>
  chicago: Rittig, Tobias, Denis Sumin, Vahid Babaei, Piotr Didyk, Alexey Voloboy,
    Alexander Wilkie, Bernd Bickel, Karol Myszkowski, Tim Weyrich, and Jaroslav Křivánek.
    “Neural Acceleration of Scattering-Aware Color 3D Printing.” <i>Computer Graphics
    Forum</i>. Wiley, 2021. <a href="https://doi.org/10.1111/cgf.142626">https://doi.org/10.1111/cgf.142626</a>.
  ieee: T. Rittig <i>et al.</i>, “Neural acceleration of scattering-aware color 3D
    printing,” <i>Computer Graphics Forum</i>, vol. 40, no. 2. Wiley, pp. 205–219,
    2021.
  ista: Rittig T, Sumin D, Babaei V, Didyk P, Voloboy A, Wilkie A, Bickel B, Myszkowski
    K, Weyrich T, Křivánek J. 2021. Neural acceleration of scattering-aware color
    3D printing. Computer Graphics Forum. 40(2), 205–219.
  mla: Rittig, Tobias, et al. “Neural Acceleration of Scattering-Aware Color 3D Printing.”
    <i>Computer Graphics Forum</i>, vol. 40, no. 2, Wiley, 2021, pp. 205–19, doi:<a
    href="https://doi.org/10.1111/cgf.142626">10.1111/cgf.142626</a>.
  short: T. Rittig, D. Sumin, V. Babaei, P. Didyk, A. Voloboy, A. Wilkie, B. Bickel,
    K. Myszkowski, T. Weyrich, J. Křivánek, Computer Graphics Forum 40 (2021) 205–219.
date_created: 2021-06-13T22:01:32Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2025-03-31T15:58:16Z
day: '01'
ddc:
- '004'
department:
- _id: BeBi
doi: 10.1111/cgf.142626
ec_funded: 1
external_id:
  isi:
  - '000657959600017'
file:
- access_level: open_access
  checksum: 33271724215f54a75c39d2ed40f2c502
  content_type: application/pdf
  creator: bbickel
  date_created: 2021-10-11T12:06:50Z
  date_updated: 2021-10-11T12:06:50Z
  file_id: '10120'
  file_name: ScatteringAwareColor3DPrinting_authorVersion.pdf
  file_size: 26026501
  relation: main_file
  success: 1
file_date_updated: 2021-10-11T12:06:50Z
has_accepted_license: '1'
intvolume: '        40'
isi: 1
issue: '2'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Submitted Version
page: 205-219
project:
- _id: 2508E324-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '642841'
  name: Distributed 3D Object Design
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '715767'
  name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
    Modeling'
publication: Computer Graphics Forum
publication_identifier:
  eissn:
  - 1467-8659
  issn:
  - 0167-7055
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Neural acceleration of scattering-aware color 3D printing
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 40
year: '2021'
...
---
_id: '9548'
abstract:
- lang: eng
  text: 'We extend the notion of the minimal volume ellipsoid containing a convex
    body in Rd to the setting of logarithmically concave functions. We consider a
    vast class of logarithmically concave functions whose superlevel sets are concentric
    ellipsoids. For a fixed function from this class, we consider the set of all its
    “affine” positions. For any log-concave function f on Rd, we consider functions
    belonging to this set of “affine” positions, and find the one with the minimal
    integral under the condition that it is pointwise greater than or equal to f.
    We study the properties of existence and uniqueness of the solution to this problem.
    For any s∈[0,+∞), we consider the construction dual to the recently defined John
    s-function (Ivanov and Naszódi in Functional John ellipsoids. arXiv preprint:
    arXiv:2006.09934, 2020). We prove that such a construction determines a unique
    function and call it the Löwner s-function of f. We study the Löwner s-functions
    as s tends to zero and to infinity. Finally, extending the notion of the outer
    volume ratio, we define the outer integral ratio of a log-concave function and
    give an asymptotically tight bound on it.'
acknowledgement: The authors acknowledge the support of the grant of the Russian Government
  N 075-15-2019-1926.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Grigory
  full_name: Ivanov, Grigory
  id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
  last_name: Ivanov
- first_name: Igor
  full_name: Tsiutsiurupa, Igor
  last_name: Tsiutsiurupa
citation:
  ama: Ivanov G, Tsiutsiurupa I. Functional Löwner ellipsoids. <i>Journal of Geometric
    Analysis</i>. 2021;31:11493-11528. doi:<a href="https://doi.org/10.1007/s12220-021-00691-4">10.1007/s12220-021-00691-4</a>
  apa: Ivanov, G., &#38; Tsiutsiurupa, I. (2021). Functional Löwner ellipsoids. <i>Journal
    of Geometric Analysis</i>. Springer. <a href="https://doi.org/10.1007/s12220-021-00691-4">https://doi.org/10.1007/s12220-021-00691-4</a>
  chicago: Ivanov, Grigory, and Igor Tsiutsiurupa. “Functional Löwner Ellipsoids.”
    <i>Journal of Geometric Analysis</i>. Springer, 2021. <a href="https://doi.org/10.1007/s12220-021-00691-4">https://doi.org/10.1007/s12220-021-00691-4</a>.
  ieee: G. Ivanov and I. Tsiutsiurupa, “Functional Löwner ellipsoids,” <i>Journal
    of Geometric Analysis</i>, vol. 31. Springer, pp. 11493–11528, 2021.
  ista: Ivanov G, Tsiutsiurupa I. 2021. Functional Löwner ellipsoids. Journal of Geometric
    Analysis. 31, 11493–11528.
  mla: Ivanov, Grigory, and Igor Tsiutsiurupa. “Functional Löwner Ellipsoids.” <i>Journal
    of Geometric Analysis</i>, vol. 31, Springer, 2021, pp. 11493–528, doi:<a href="https://doi.org/10.1007/s12220-021-00691-4">10.1007/s12220-021-00691-4</a>.
  short: G. Ivanov, I. Tsiutsiurupa, Journal of Geometric Analysis 31 (2021) 11493–11528.
date_created: 2021-06-13T22:01:32Z
date_published: 2021-05-31T00:00:00Z
date_updated: 2023-08-08T14:04:49Z
day: '31'
department:
- _id: UlWa
doi: 10.1007/s12220-021-00691-4
external_id:
  arxiv:
  - '2008.09543'
  isi:
  - '000656507500001'
intvolume: '        31'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2008.09543
month: '05'
oa: 1
oa_version: Preprint
page: 11493-11528
publication: Journal of Geometric Analysis
publication_identifier:
  eissn:
  - 1559-002X
  issn:
  - 1050-6926
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Functional Löwner ellipsoids
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 31
year: '2021'
...
---
_id: '9549'
abstract:
- lang: eng
  text: 'AMPA receptors (AMPARs) mediate the majority of excitatory transmission in
    the brain and enable the synaptic plasticity that underlies learning1. A diverse
    array of AMPAR signalling complexes are established by receptor auxiliary subunits,
    which associate with the AMPAR in various combinations to modulate trafficking,
    gating and synaptic strength2. However, their mechanisms of action are poorly
    understood. Here we determine cryo-electron microscopy structures of the heteromeric
    GluA1–GluA2 receptor assembled with both TARP-γ8 and CNIH2, the predominant AMPAR
    complex in the forebrain, in both resting and active states. Two TARP-γ8 and two
    CNIH2 subunits insert at distinct sites beneath the ligand-binding domains of
    the receptor, with site-specific lipids shaping each interaction and affecting
    the gating regulation of the AMPARs. Activation of the receptor leads to asymmetry
    between GluA1 and GluA2 along the ion conduction path and an outward expansion
    of the channel triggers counter-rotations of both auxiliary subunit pairs, promoting
    the active-state conformation. In addition, both TARP-γ8 and CNIH2 pivot towards
    the pore exit upon activation, extending their reach for cytoplasmic receptor
    elements. CNIH2 achieves this through its uniquely extended M2 helix, which has
    transformed this endoplasmic reticulum-export factor into a powerful AMPAR modulator
    that is capable of providing hippocampal pyramidal neurons with their integrative
    synaptic properties. '
acknowledgement: We thank members of the Greger laboratory, B. Herguedas, J. Krieger
  and J.-N. Dohrke for comments on the manuscript; J. Krieger and J.-N. Dohrke for
  discussion, J. Krieger for help with the normal mode analysis, B. Köhegyi for help
  with cryo-EM imaging, V. Chang and K. Suzuki for helping to generate the CNIH2-1D4-HA
  stable cell line, M. Carvalho for assistance at early stages of this project, the
  LMB scientific computing and the cryo-EM facility for support, P. Emsley for help
  with model building, T. Nakane for helpful comments with RELION 3.1 and R. Warshamanage
  for helping with EMDA cryo-EM-map processing. We acknowledge the Diamond Light Source
  for access and support of the Cryo-EM facilities at the UK national electron bio10
  imaging centre (eBIC), proposal EM17434, funded by the Wellcome Trust, MRC and BBSRC.
  This work was supported by grants from the Medical Research Council, as part of
  United Kingdom Research and Innovation (also known as UK Research and Innovation)
  (MC_U105174197) and BBSRC (BB/N002113/1) to I.H.G.
article_processing_charge: No
article_type: original
author:
- first_name: Danyang
  full_name: Zhang, Danyang
  last_name: Zhang
- first_name: Jake
  full_name: Watson, Jake
  id: 63836096-4690-11EA-BD4E-32803DDC885E
  last_name: Watson
  orcid: 0000-0002-8698-3823
- first_name: Peter M.
  full_name: Matthews, Peter M.
  last_name: Matthews
- first_name: Ondrej
  full_name: Cais, Ondrej
  last_name: Cais
- first_name: Ingo H.
  full_name: Greger, Ingo H.
  last_name: Greger
citation:
  ama: Zhang D, Watson J, Matthews PM, Cais O, Greger IH. Gating and modulation of
    a hetero-octameric AMPA glutamate receptor. <i>Nature</i>. 2021;594:454-458. doi:<a
    href="https://doi.org/10.1038/s41586-021-03613-0">10.1038/s41586-021-03613-0</a>
  apa: Zhang, D., Watson, J., Matthews, P. M., Cais, O., &#38; Greger, I. H. (2021).
    Gating and modulation of a hetero-octameric AMPA glutamate receptor. <i>Nature</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41586-021-03613-0">https://doi.org/10.1038/s41586-021-03613-0</a>
  chicago: Zhang, Danyang, Jake Watson, Peter M. Matthews, Ondrej Cais, and Ingo H.
    Greger. “Gating and Modulation of a Hetero-Octameric AMPA Glutamate Receptor.”
    <i>Nature</i>. Springer Nature, 2021. <a href="https://doi.org/10.1038/s41586-021-03613-0">https://doi.org/10.1038/s41586-021-03613-0</a>.
  ieee: D. Zhang, J. Watson, P. M. Matthews, O. Cais, and I. H. Greger, “Gating and
    modulation of a hetero-octameric AMPA glutamate receptor,” <i>Nature</i>, vol.
    594. Springer Nature, pp. 454–458, 2021.
  ista: Zhang D, Watson J, Matthews PM, Cais O, Greger IH. 2021. Gating and modulation
    of a hetero-octameric AMPA glutamate receptor. Nature. 594, 454–458.
  mla: Zhang, Danyang, et al. “Gating and Modulation of a Hetero-Octameric AMPA Glutamate
    Receptor.” <i>Nature</i>, vol. 594, Springer Nature, 2021, pp. 454–58, doi:<a
    href="https://doi.org/10.1038/s41586-021-03613-0">10.1038/s41586-021-03613-0</a>.
  short: D. Zhang, J. Watson, P.M. Matthews, O. Cais, I.H. Greger, Nature 594 (2021)
    454–458.
date_created: 2021-06-13T22:01:33Z
date_published: 2021-06-02T00:00:00Z
date_updated: 2023-08-08T13:59:51Z
day: '02'
department:
- _id: PeJo
doi: 10.1038/s41586-021-03613-0
external_id:
  isi:
  - '000657238100003'
  pmid:
  - '34079129'
intvolume: '       594'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1038/s41586-021-03613-0
month: '06'
oa: 1
oa_version: Published Version
page: 454-458
pmid: 1
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Gating and modulation of a hetero-octameric AMPA glutamate receptor
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 594
year: '2021'
...
---
_id: '9569'
abstract:
- lang: eng
  text: We report the synthesis and characterization of graphene functionalized with
    iron (Fe3+) oxide (G-Fe3O4) nanohybrids for radio-frequency magnetic hyperthermia
    application. We adopted the wet chemical procedure, using various contents of
    Fe3O4 (magnetite) from 0–100% for making two-dimensional graphene–Fe3O4 nanohybrids.
    The homogeneous dispersal of Fe3O4 nanoparticles decorated on the graphene surface
    combined with their biocompatibility and high thermal conductivity make them an
    excellent material for magnetic hyperthermia. The morphological and magnetic properties
    of the nanohybrids were studied using scanning electron microscopy (SEM) and a
    vibrating sample magnetometer (VSM), respectively. The smart magnetic platforms
    were exposed to an alternating current (AC) magnetic field of 633 kHz and of strength
    9.1 mT for studying their hyperthermic performance. The localized antitumor effects
    were investigated with artificial neural network modeling. A neural net time-series
    model was developed for the assessment of the best nanohybrid composition to serve
    the purpose with an accuracy close to 100%. Six Nonlinear Autoregressive with
    External Input (NARX) models were obtained, one for each of the components. The
    assessment of the accuracy of the predicted results has been done on the basis
    of Mean Squared Error (MSE). The highest Mean Squared Error value was obtained
    for the nanohybrid containing 45% magnetite and 55% graphene (F45G55) in the training
    phase i.e., 0.44703, which is where the model achieved optimal results after 71
    epochs. The F45G55 nanohybrid was found to be the best for hyperthermia applications
    in low dosage with the highest specific absorption rate (SAR) and mean squared
    error values.
acknowledgement: The research is funded by Higher Education Commission (HEC) Pakistan
  under start-up research grant program (SRGP) Project no. 2454.
article_processing_charge: No
article_type: original
author:
- first_name: M. S.
  full_name: Dar, M. S.
  last_name: Dar
- first_name: Khush Bakhat
  full_name: Akram, Khush Bakhat
  last_name: Akram
- first_name: Ayesha
  full_name: Sohail, Ayesha
  last_name: Sohail
- first_name: Fatima
  full_name: Arif, Fatima
  last_name: Arif
- first_name: Fatemeh
  full_name: Zabihi, Fatemeh
  last_name: Zabihi
- first_name: Shengyuan
  full_name: Yang, Shengyuan
  last_name: Yang
- first_name: Shamsa
  full_name: Munir, Shamsa
  last_name: Munir
- first_name: Meifang
  full_name: Zhu, Meifang
  last_name: Zhu
- first_name: M.
  full_name: Abid, M.
  last_name: Abid
- first_name: Muhammad
  full_name: Nauman, Muhammad
  id: 32c21954-2022-11eb-9d5f-af9f93c24e71
  last_name: Nauman
  orcid: 0000-0002-2111-4846
citation:
  ama: Dar MS, Akram KB, Sohail A, et al. Heat induction in two-dimensional graphene–Fe3O4
    nanohybrids for magnetic hyperthermia applications with artificial neural network
    modeling. <i>RSC Advances</i>. 2021;11(35):21702-21715. doi:<a href="https://doi.org/10.1039/d1ra03428f">10.1039/d1ra03428f</a>
  apa: Dar, M. S., Akram, K. B., Sohail, A., Arif, F., Zabihi, F., Yang, S., … Nauman,
    M. (2021). Heat induction in two-dimensional graphene–Fe3O4 nanohybrids for magnetic
    hyperthermia applications with artificial neural network modeling. <i>RSC Advances</i>.
    Royal Society of Chemistry. <a href="https://doi.org/10.1039/d1ra03428f">https://doi.org/10.1039/d1ra03428f</a>
  chicago: Dar, M. S., Khush Bakhat Akram, Ayesha Sohail, Fatima Arif, Fatemeh Zabihi,
    Shengyuan Yang, Shamsa Munir, Meifang Zhu, M. Abid, and Muhammad Nauman. “Heat
    Induction in Two-Dimensional Graphene–Fe3O4 Nanohybrids for Magnetic Hyperthermia
    Applications with Artificial Neural Network Modeling.” <i>RSC Advances</i>. Royal
    Society of Chemistry, 2021. <a href="https://doi.org/10.1039/d1ra03428f">https://doi.org/10.1039/d1ra03428f</a>.
  ieee: M. S. Dar <i>et al.</i>, “Heat induction in two-dimensional graphene–Fe3O4
    nanohybrids for magnetic hyperthermia applications with artificial neural network
    modeling,” <i>RSC Advances</i>, vol. 11, no. 35. Royal Society of Chemistry, pp.
    21702–21715, 2021.
  ista: Dar MS, Akram KB, Sohail A, Arif F, Zabihi F, Yang S, Munir S, Zhu M, Abid
    M, Nauman M. 2021. Heat induction in two-dimensional graphene–Fe3O4 nanohybrids
    for magnetic hyperthermia applications with artificial neural network modeling.
    RSC Advances. 11(35), 21702–21715.
  mla: Dar, M. S., et al. “Heat Induction in Two-Dimensional Graphene–Fe3O4 Nanohybrids
    for Magnetic Hyperthermia Applications with Artificial Neural Network Modeling.”
    <i>RSC Advances</i>, vol. 11, no. 35, Royal Society of Chemistry, 2021, pp. 21702–15,
    doi:<a href="https://doi.org/10.1039/d1ra03428f">10.1039/d1ra03428f</a>.
  short: M.S. Dar, K.B. Akram, A. Sohail, F. Arif, F. Zabihi, S. Yang, S. Munir, M.
    Zhu, M. Abid, M. Nauman, RSC Advances 11 (2021) 21702–21715.
date_created: 2021-06-19T07:27:45Z
date_published: 2021-06-18T00:00:00Z
date_updated: 2024-10-21T06:02:02Z
day: '18'
ddc:
- '540'
department:
- _id: KiMo
doi: 10.1039/d1ra03428f
external_id:
  isi:
  - '000665644000048'
file:
- access_level: open_access
  checksum: cd582d67ace7151078e46b3a896871a9
  content_type: application/pdf
  creator: asandaue
  date_created: 2021-06-23T13:09:34Z
  date_updated: 2021-06-23T13:09:34Z
  file_id: '9596'
  file_name: 2021_RSCAdvances_Dar.pdf
  file_size: 2114557
  relation: main_file
  success: 1
file_date_updated: 2021-06-23T13:09:34Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
issue: '35'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/3.0/
month: '06'
oa: 1
oa_version: Published Version
page: 21702-21715
publication: RSC Advances
publication_identifier:
  eissn:
  - 2046-2069
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Heat induction in two-dimensional graphene–Fe3O4 nanohybrids for magnetic hyperthermia
  applications with artificial neural network modeling
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
  name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
  short: CC BY (3.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2021'
...
---
_id: '9570'
abstract:
- lang: eng
  text: We present conductance-matrix measurements in long, three-terminal hybrid
    superconductor-semiconductor nanowires, and compare with theoretical predictions
    of a magnetic-field-driven, topological quantum phase transition. By examining
    the nonlocal conductance, we identify the closure of the excitation gap in the
    bulk of the semiconductor before the emergence of zero-bias peaks, ruling out
    spurious gap-closure signatures from localized states. We observe that after the
    gap closes, nonlocal signals and zero-bias peaks fluctuate strongly at both ends,
    inconsistent with a simple picture of clean topological superconductivity.
acknowledgement: We acknowledge insightful discussions with K. Flensberg, E. B. Hansen,
  T. Karzig, R. Lutchyn, D. Pikulin, E. Prada, and R. Aguado. This work was supported
  by Microsoft Project Q and the Danmarks Grundforskningsfond. C.M.M. acknowledges
  support from the Villum Fonden. A.P.H. and L.C. contributed equally to this work.
article_number: '235201'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Denise
  full_name: Puglia, Denise
  id: 4D495994-AE37-11E9-AC72-31CAE5697425
  last_name: Puglia
  orcid: 0000-0003-1144-2763
- first_name: E. A.
  full_name: Martinez, E. A.
  last_name: Martinez
- first_name: G. C.
  full_name: Ménard, G. C.
  last_name: Ménard
- first_name: A.
  full_name: Pöschl, A.
  last_name: Pöschl
- first_name: S.
  full_name: Gronin, S.
  last_name: Gronin
- first_name: G. C.
  full_name: Gardner, G. C.
  last_name: Gardner
- first_name: R.
  full_name: Kallaher, R.
  last_name: Kallaher
- first_name: M. J.
  full_name: Manfra, M. J.
  last_name: Manfra
- first_name: C. M.
  full_name: Marcus, C. M.
  last_name: Marcus
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
- first_name: L.
  full_name: Casparis, L.
  last_name: Casparis
citation:
  ama: Puglia D, Martinez EA, Ménard GC, et al. Closing of the induced gap in a hybrid
    superconductor-semiconductor nanowire. <i>Physical Review B</i>. 2021;103(23).
    doi:<a href="https://doi.org/10.1103/PhysRevB.103.235201">10.1103/PhysRevB.103.235201</a>
  apa: Puglia, D., Martinez, E. A., Ménard, G. C., Pöschl, A., Gronin, S., Gardner,
    G. C., … Casparis, L. (2021). Closing of the induced gap in a hybrid superconductor-semiconductor
    nanowire. <i>Physical Review B</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.103.235201">https://doi.org/10.1103/PhysRevB.103.235201</a>
  chicago: Puglia, Denise, E. A. Martinez, G. C. Ménard, A. Pöschl, S. Gronin, G.
    C. Gardner, R. Kallaher, et al. “Closing of the Induced Gap in a Hybrid Superconductor-Semiconductor
    Nanowire.” <i>Physical Review B</i>. American Physical Society, 2021. <a href="https://doi.org/10.1103/PhysRevB.103.235201">https://doi.org/10.1103/PhysRevB.103.235201</a>.
  ieee: D. Puglia <i>et al.</i>, “Closing of the induced gap in a hybrid superconductor-semiconductor
    nanowire,” <i>Physical Review B</i>, vol. 103, no. 23. American Physical Society,
    2021.
  ista: Puglia D, Martinez EA, Ménard GC, Pöschl A, Gronin S, Gardner GC, Kallaher
    R, Manfra MJ, Marcus CM, Higginbotham AP, Casparis L. 2021. Closing of the induced
    gap in a hybrid superconductor-semiconductor nanowire. Physical Review B. 103(23),
    235201.
  mla: Puglia, Denise, et al. “Closing of the Induced Gap in a Hybrid Superconductor-Semiconductor
    Nanowire.” <i>Physical Review B</i>, vol. 103, no. 23, 235201, American Physical
    Society, 2021, doi:<a href="https://doi.org/10.1103/PhysRevB.103.235201">10.1103/PhysRevB.103.235201</a>.
  short: D. Puglia, E.A. Martinez, G.C. Ménard, A. Pöschl, S. Gronin, G.C. Gardner,
    R. Kallaher, M.J. Manfra, C.M. Marcus, A.P. Higginbotham, L. Casparis, Physical
    Review B 103 (2021).
date_created: 2021-06-20T22:01:33Z
date_published: 2021-06-15T00:00:00Z
date_updated: 2025-07-10T12:01:53Z
day: '15'
department:
- _id: AnHi
doi: 10.1103/PhysRevB.103.235201
external_id:
  arxiv:
  - '2006.01275'
  isi:
  - '000661512500002'
intvolume: '       103'
isi: 1
issue: '23'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2006.01275
month: '06'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  record:
  - id: '13080'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Closing of the induced gap in a hybrid superconductor-semiconductor nanowire
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 103
year: '2021'
...
---
_id: '9571'
abstract:
- lang: eng
  text: As the size and complexity of models and datasets grow, so does the need for
    communication-efficient variants of stochastic gradient descent that can be deployed
    to perform parallel model training. One popular communication-compression method
    for data-parallel SGD is QSGD (Alistarh et al., 2017), which quantizes and encodes
    gradients to reduce communication costs. The baseline variant of QSGD provides
    strong theoretical guarantees, however, for practical purposes, the authors proposed
    a heuristic variant which we call QSGDinf, which demonstrated impressive empirical
    gains for distributed training of large neural networks. In this paper, we build
    on this work to propose a new gradient quantization scheme, and show that it has
    both stronger theoretical guarantees than QSGD, and matches and exceeds the empirical
    performance of the QSGDinf heuristic and of other compression methods.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ali
  full_name: Ramezani-Kebrya, Ali
  last_name: Ramezani-Kebrya
- first_name: Fartash
  full_name: Faghri, Fartash
  last_name: Faghri
- first_name: Ilya
  full_name: Markov, Ilya
  last_name: Markov
- first_name: Vitalii
  full_name: Aksenov, Vitalii
  id: 2980135A-F248-11E8-B48F-1D18A9856A87
  last_name: Aksenov
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Daniel M.
  full_name: Roy, Daniel M.
  last_name: Roy
citation:
  ama: 'Ramezani-Kebrya A, Faghri F, Markov I, Aksenov V, Alistarh D-A, Roy DM. NUQSGD:
    Provably communication-efficient data-parallel SGD via nonuniform quantization.
    <i>Journal of Machine Learning Research</i>. 2021;22(114):1−43.'
  apa: 'Ramezani-Kebrya, A., Faghri, F., Markov, I., Aksenov, V., Alistarh, D.-A.,
    &#38; Roy, D. M. (2021). NUQSGD: Provably communication-efficient data-parallel
    SGD via nonuniform quantization. <i>Journal of Machine Learning Research</i>.
    Journal of Machine Learning Research.'
  chicago: 'Ramezani-Kebrya, Ali, Fartash Faghri, Ilya Markov, Vitalii Aksenov, Dan-Adrian
    Alistarh, and Daniel M. Roy. “NUQSGD: Provably Communication-Efficient Data-Parallel
    SGD via Nonuniform Quantization.” <i>Journal of Machine Learning Research</i>.
    Journal of Machine Learning Research, 2021.'
  ieee: 'A. Ramezani-Kebrya, F. Faghri, I. Markov, V. Aksenov, D.-A. Alistarh, and
    D. M. Roy, “NUQSGD: Provably communication-efficient data-parallel SGD via nonuniform
    quantization,” <i>Journal of Machine Learning Research</i>, vol. 22, no. 114.
    Journal of Machine Learning Research, p. 1−43, 2021.'
  ista: 'Ramezani-Kebrya A, Faghri F, Markov I, Aksenov V, Alistarh D-A, Roy DM. 2021.
    NUQSGD: Provably communication-efficient data-parallel SGD via nonuniform quantization.
    Journal of Machine Learning Research. 22(114), 1−43.'
  mla: 'Ramezani-Kebrya, Ali, et al. “NUQSGD: Provably Communication-Efficient Data-Parallel
    SGD via Nonuniform Quantization.” <i>Journal of Machine Learning Research</i>,
    vol. 22, no. 114, Journal of Machine Learning Research, 2021, p. 1−43.'
  short: A. Ramezani-Kebrya, F. Faghri, I. Markov, V. Aksenov, D.-A. Alistarh, D.M.
    Roy, Journal of Machine Learning Research 22 (2021) 1−43.
corr_author: '1'
date_created: 2021-06-20T22:01:33Z
date_published: 2021-04-01T00:00:00Z
date_updated: 2025-07-10T12:01:54Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
external_id:
  arxiv:
  - '1908.06077'
file:
- access_level: open_access
  checksum: 6428aa8bcb67768b6949c99b55d5281d
  content_type: application/pdf
  creator: asandaue
  date_created: 2021-06-23T07:09:41Z
  date_updated: 2021-06-23T07:09:41Z
  file_id: '9595'
  file_name: 2021_JournalOfMachineLearningResearch_Ramezani-Kebrya.pdf
  file_size: 11237154
  relation: main_file
  success: 1
file_date_updated: 2021-06-23T07:09:41Z
has_accepted_license: '1'
intvolume: '        22'
issue: '114'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.jmlr.org/papers/v22/20-255.html
month: '04'
oa: 1
oa_version: Published Version
page: 1−43
publication: Journal of Machine Learning Research
publication_identifier:
  eissn:
  - 1533-7928
  issn:
  - 1532-4435
publication_status: published
publisher: Journal of Machine Learning Research
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'NUQSGD: Provably communication-efficient data-parallel SGD via nonuniform
  quantization'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2021'
...
---
_id: '9572'
abstract:
- lang: eng
  text: We prove that every n-vertex tournament G has an acyclic subgraph with chromatic
    number at least n5/9−o(1), while there exists an n-vertex tournament G whose every
    acyclic subgraph has chromatic number at most n3/4+o(1). This establishes in a
    strong form a conjecture of Nassar and Yuster and improves on another result of
    theirs. Our proof combines probabilistic and spectral techniques together with
    some additional ideas. In particular, we prove a lemma showing that every tournament
    with many transitive subtournaments has a large subtournament that is almost transitive.
    This may be of independent interest.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jacob
  full_name: Fox, Jacob
  last_name: Fox
- first_name: Matthew Alan
  full_name: Kwan, Matthew Alan
  id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
  last_name: Kwan
  orcid: 0000-0002-4003-7567
- first_name: Benny
  full_name: Sudakov, Benny
  last_name: Sudakov
citation:
  ama: Fox J, Kwan MA, Sudakov B. Acyclic subgraphs of tournaments with high chromatic
    number. <i>Bulletin of the London Mathematical Society</i>. 2021;53(2):619-630.
    doi:<a href="https://doi.org/10.1112/blms.12446">10.1112/blms.12446</a>
  apa: Fox, J., Kwan, M. A., &#38; Sudakov, B. (2021). Acyclic subgraphs of tournaments
    with high chromatic number. <i>Bulletin of the London Mathematical Society</i>.
    Wiley. <a href="https://doi.org/10.1112/blms.12446">https://doi.org/10.1112/blms.12446</a>
  chicago: Fox, Jacob, Matthew Alan Kwan, and Benny Sudakov. “Acyclic Subgraphs of
    Tournaments with High Chromatic Number.” <i>Bulletin of the London Mathematical
    Society</i>. Wiley, 2021. <a href="https://doi.org/10.1112/blms.12446">https://doi.org/10.1112/blms.12446</a>.
  ieee: J. Fox, M. A. Kwan, and B. Sudakov, “Acyclic subgraphs of tournaments with
    high chromatic number,” <i>Bulletin of the London Mathematical Society</i>, vol.
    53, no. 2. Wiley, pp. 619–630, 2021.
  ista: Fox J, Kwan MA, Sudakov B. 2021. Acyclic subgraphs of tournaments with high
    chromatic number. Bulletin of the London Mathematical Society. 53(2), 619–630.
  mla: Fox, Jacob, et al. “Acyclic Subgraphs of Tournaments with High Chromatic Number.”
    <i>Bulletin of the London Mathematical Society</i>, vol. 53, no. 2, Wiley, 2021,
    pp. 619–30, doi:<a href="https://doi.org/10.1112/blms.12446">10.1112/blms.12446</a>.
  short: J. Fox, M.A. Kwan, B. Sudakov, Bulletin of the London Mathematical Society
    53 (2021) 619–630.
date_created: 2021-06-21T06:11:56Z
date_published: 2021-04-03T00:00:00Z
date_updated: 2023-02-23T14:01:21Z
day: '03'
doi: 10.1112/blms.12446
extern: '1'
external_id:
  arxiv:
  - '1912.07722'
intvolume: '        53'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1912.07722
month: '04'
oa: 1
oa_version: Preprint
page: 619-630
publication: Bulletin of the London Mathematical Society
publication_identifier:
  eissn:
  - 1469-2120
  issn:
  - 0024-6093
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Acyclic subgraphs of tournaments with high chromatic number
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 53
year: '2021'
...
