---
_id: '15150'
abstract:
- lang: eng
  text: The majority of gene transcripts generated by RNA polymerase II in mammalian
    genomes initiate at CpG island (CGI) promoters1,2, yet our understanding of their
    regulation remains limited. This is in part due to the incomplete information
    that we have on transcription factors, their DNA-binding motifs and which genomic
    binding sites are functional in any given cell type3,4,5. In addition, there are
    orphan motifs without known binders, such as the CGCG element, which is associated
    with highly expressed genes across human tissues and enriched near the transcription
    start site of a subset of CGI promoters6,7,8. Here we combine single-molecule
    footprinting with interaction proteomics to identify BTG3-associated nuclear protein
    (BANP) as the transcription factor that binds this element in the mouse and human
    genome. We show that BANP is a strong CGI activator that controls essential metabolic
    genes in pluripotent stem and terminally differentiated neuronal cells. BANP binding
    is repelled by DNA methylation of its motif in vitro and in vivo, which epigenetically
    restricts most binding to CGIs and accounts for differential binding at aberrantly
    methylated CGI promoters in cancer cells. Upon binding to an unmethylated motif,
    BANP opens chromatin and phases nucleosomes. These findings establish BANP as
    a critical activator of a set of essential genes and suggest a model in which
    the activity of CGI promoters relies on methylation-sensitive transcription factors
    that are capable of chromatin opening.
article_processing_charge: No
article_type: original
author:
- first_name: Ralph S.
  full_name: Grand, Ralph S.
  last_name: Grand
- first_name: Lukas
  full_name: Burger, Lukas
  last_name: Burger
- first_name: Cathrin
  full_name: Gräwe, Cathrin
  last_name: Gräwe
- first_name: Alicia
  full_name: Michael, Alicia
  id: 6437c950-2a03-11ee-914d-d6476dd7b75c
  last_name: Michael
  orcid: 0000-0002-6080-839X
- first_name: Luke
  full_name: Isbel, Luke
  last_name: Isbel
- first_name: Daniel
  full_name: Hess, Daniel
  last_name: Hess
- first_name: Leslie
  full_name: Hoerner, Leslie
  last_name: Hoerner
- first_name: Vytautas
  full_name: Iesmantavicius, Vytautas
  last_name: Iesmantavicius
- first_name: Sevi
  full_name: Durdu, Sevi
  last_name: Durdu
- first_name: Marco
  full_name: Pregnolato, Marco
  last_name: Pregnolato
- first_name: Arnaud R.
  full_name: Krebs, Arnaud R.
  last_name: Krebs
- first_name: Sébastien A.
  full_name: Smallwood, Sébastien A.
  last_name: Smallwood
- first_name: Nicolas
  full_name: Thomä, Nicolas
  last_name: Thomä
- first_name: Michiel
  full_name: Vermeulen, Michiel
  last_name: Vermeulen
- first_name: Dirk
  full_name: Schübeler, Dirk
  last_name: Schübeler
citation:
  ama: Grand RS, Burger L, Gräwe C, et al. BANP opens chromatin and activates CpG-island-regulated
    genes. <i>Nature</i>. 2021;596:133-137. doi:<a href="https://doi.org/10.1038/s41586-021-03689-8">10.1038/s41586-021-03689-8</a>
  apa: Grand, R. S., Burger, L., Gräwe, C., Michael, A. K., Isbel, L., Hess, D., …
    Schübeler, D. (2021). BANP opens chromatin and activates CpG-island-regulated
    genes. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-021-03689-8">https://doi.org/10.1038/s41586-021-03689-8</a>
  chicago: Grand, Ralph S., Lukas Burger, Cathrin Gräwe, Alicia K. Michael, Luke Isbel,
    Daniel Hess, Leslie Hoerner, et al. “BANP Opens Chromatin and Activates CpG-Island-Regulated
    Genes.” <i>Nature</i>. Springer Nature, 2021. <a href="https://doi.org/10.1038/s41586-021-03689-8">https://doi.org/10.1038/s41586-021-03689-8</a>.
  ieee: R. S. Grand <i>et al.</i>, “BANP opens chromatin and activates CpG-island-regulated
    genes,” <i>Nature</i>, vol. 596. Springer Nature, pp. 133–137, 2021.
  ista: Grand RS, Burger L, Gräwe C, Michael AK, Isbel L, Hess D, Hoerner L, Iesmantavicius
    V, Durdu S, Pregnolato M, Krebs AR, Smallwood SA, Thomä N, Vermeulen M, Schübeler
    D. 2021. BANP opens chromatin and activates CpG-island-regulated genes. Nature.
    596, 133–137.
  mla: Grand, Ralph S., et al. “BANP Opens Chromatin and Activates CpG-Island-Regulated
    Genes.” <i>Nature</i>, vol. 596, Springer Nature, 2021, pp. 133–37, doi:<a href="https://doi.org/10.1038/s41586-021-03689-8">10.1038/s41586-021-03689-8</a>.
  short: R.S. Grand, L. Burger, C. Gräwe, A.K. Michael, L. Isbel, D. Hess, L. Hoerner,
    V. Iesmantavicius, S. Durdu, M. Pregnolato, A.R. Krebs, S.A. Smallwood, N. Thomä,
    M. Vermeulen, D. Schübeler, Nature 596 (2021) 133–137.
date_created: 2024-03-21T07:53:48Z
date_published: 2021-08-05T00:00:00Z
date_updated: 2024-03-25T12:34:31Z
day: '05'
doi: 10.1038/s41586-021-03689-8
extern: '1'
intvolume: '       596'
language:
- iso: eng
month: '08'
oa_version: None
page: 133-137
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: BANP opens chromatin and activates CpG-island-regulated genes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 596
year: '2021'
...
---
_id: '15151'
abstract:
- lang: eng
  text: Eukaryotic DNA-binding proteins operate in the context of chromatin, where
    nucleosomes are the elementary building blocks. Nucleosomal DNA is wrapped around
    a histone core, thereby rendering a large fraction of the DNA surface inaccessible
    to DNA-binding proteins. Nevertheless, first responders in DNA repair and sequence-specific
    transcription factors bind DNA target sites obstructed by chromatin. While early
    studies examined protein binding to histone-free DNA, it is only now beginning
    to emerge how DNA sequences are interrogated on nucleosomes. These readout strategies
    range from the release of nucleosomal DNA from histones, to rotational/translation
    register shifts of the DNA motif, and nucleosome-specific DNA binding modes that
    differ from those observed on naked DNA. Since DNA motif engagement on nucleosomes
    strongly depends on position and orientation, we argue that motif location and
    nucleosome positioning co-determine protein access to DNA in transcription and
    DNA repair.
article_processing_charge: No
article_type: review
author:
- first_name: Alicia
  full_name: Michael, Alicia
  id: 6437c950-2a03-11ee-914d-d6476dd7b75c
  last_name: Michael
  orcid: 0000-0002-6080-839X
- first_name: Nicolas H.
  full_name: Thomä, Nicolas H.
  last_name: Thomä
citation:
  ama: Michael AK, Thomä NH. Reading the chromatinized genome. <i>Cell</i>. 2021;184(14):3599-3611.
    doi:<a href="https://doi.org/10.1016/j.cell.2021.05.029">10.1016/j.cell.2021.05.029</a>
  apa: Michael, A. K., &#38; Thomä, N. H. (2021). Reading the chromatinized genome.
    <i>Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.cell.2021.05.029">https://doi.org/10.1016/j.cell.2021.05.029</a>
  chicago: Michael, Alicia K., and Nicolas H. Thomä. “Reading the Chromatinized Genome.”
    <i>Cell</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.cell.2021.05.029">https://doi.org/10.1016/j.cell.2021.05.029</a>.
  ieee: A. K. Michael and N. H. Thomä, “Reading the chromatinized genome,” <i>Cell</i>,
    vol. 184, no. 14. Elsevier, pp. 3599–3611, 2021.
  ista: Michael AK, Thomä NH. 2021. Reading the chromatinized genome. Cell. 184(14),
    3599–3611.
  mla: Michael, Alicia K., and Nicolas H. Thomä. “Reading the Chromatinized Genome.”
    <i>Cell</i>, vol. 184, no. 14, Elsevier, 2021, pp. 3599–611, doi:<a href="https://doi.org/10.1016/j.cell.2021.05.029">10.1016/j.cell.2021.05.029</a>.
  short: A.K. Michael, N.H. Thomä, Cell 184 (2021) 3599–3611.
date_created: 2024-03-21T07:54:19Z
date_published: 2021-07-08T00:00:00Z
date_updated: 2024-03-25T12:31:39Z
day: '08'
doi: 10.1016/j.cell.2021.05.029
extern: '1'
intvolume: '       184'
issue: '14'
keyword:
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.cell.2021.05.029
month: '07'
oa: 1
oa_version: Published Version
page: 3599-3611
publication: Cell
publication_identifier:
  issn:
  - 0092-8674
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Reading the chromatinized genome
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 184
year: '2021'
...
---
_id: '15215'
abstract:
- lang: eng
  text: AT2019wey (SRGA J043520.9+552226, SRGE J043523.3+552234) is a transient first
    reported by the ATLAS optical survey in 2019 December. It rose to prominence upon
    detection, three months later, by the Spektrum-Roentgen-Gamma (SRG) mission in
    its first all-sky survey. X-ray observations reported in Yao et al. suggest that
    AT2019wey is a Galactic low-mass X-ray binary (LMXB) with a black hole (BH) or
    neutron star (NS) accretor. Here we present ultraviolet, optical, near-infrared,
    and radio observations of this object. We show that the companion is a short-period
    (P ≲ 16 hr) low-mass (<1 M⊙) star. We consider AT2019wey to be a candidate BH
    system since its locations on the Lradio–LX and Lopt–LX diagrams are closer to
    BH binaries than NS binaries. We demonstrate that from 2020 June to August, despite
    the more than 10 times brightening at radio and X-ray wavelengths, the optical
    luminosity of AT2019wey only increased by 1.3–1.4 times. We interpret the UV/optical
    emission before the brightening as thermal emission from a truncated disk in a
    hot accretion flow and the UV/optical emission after the brightening as reprocessing
    of the X-ray emission in the outer accretion disk. AT2019wey demonstrates that
    combining current wide-field optical surveys and SRG provides a way to discover
    the emerging population of short-period BH LMXB systems with faint X-ray outbursts.
article_number: '120'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Yuhan
  full_name: Yao, Yuhan
  last_name: Yao
- first_name: S. R.
  full_name: Kulkarni, S. R.
  last_name: Kulkarni
- first_name: Kevin B.
  full_name: Burdge, Kevin B.
  last_name: Burdge
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Kishalay
  full_name: De, Kishalay
  last_name: De
- first_name: Dillon
  full_name: Dong, Dillon
  last_name: Dong
- first_name: C.
  full_name: Fremling, C.
  last_name: Fremling
- first_name: Mansi M.
  full_name: Kasliwal, Mansi M.
  last_name: Kasliwal
- first_name: Thomas
  full_name: Kupfer, Thomas
  last_name: Kupfer
- first_name: Jan
  full_name: van Roestel, Jan
  last_name: van Roestel
- first_name: Jesper
  full_name: Sollerman, Jesper
  last_name: Sollerman
- first_name: Ashot
  full_name: Bagdasaryan, Ashot
  last_name: Bagdasaryan
- first_name: Eric C.
  full_name: Bellm, Eric C.
  last_name: Bellm
- first_name: S. Bradley
  full_name: Cenko, S. Bradley
  last_name: Cenko
- first_name: Andrew J.
  full_name: Drake, Andrew J.
  last_name: Drake
- first_name: Dmitry A.
  full_name: Duev, Dmitry A.
  last_name: Duev
- first_name: Matthew J.
  full_name: Graham, Matthew J.
  last_name: Graham
- first_name: Stephen
  full_name: Kaye, Stephen
  last_name: Kaye
- first_name: Frank J.
  full_name: Masci, Frank J.
  last_name: Masci
- first_name: Nicolas
  full_name: Miranda, Nicolas
  last_name: Miranda
- first_name: Thomas A.
  full_name: Prince, Thomas A.
  last_name: Prince
- first_name: Reed
  full_name: Riddle, Reed
  last_name: Riddle
- first_name: Ben
  full_name: Rusholme, Ben
  last_name: Rusholme
- first_name: Maayane T.
  full_name: Soumagnac, Maayane T.
  last_name: Soumagnac
citation:
  ama: 'Yao Y, Kulkarni SR, Burdge KB, et al. Multi-wavelength observations of AT2019wey:
    A new candidate black hole low-mass X-ray binary. <i>The Astrophysical Journal</i>.
    2021;920(2). doi:<a href="https://doi.org/10.3847/1538-4357/ac15f9">10.3847/1538-4357/ac15f9</a>'
  apa: 'Yao, Y., Kulkarni, S. R., Burdge, K. B., Caiazzo, I., De, K., Dong, D., …
    Soumagnac, M. T. (2021). Multi-wavelength observations of AT2019wey: A new candidate
    black hole low-mass X-ray binary. <i>The Astrophysical Journal</i>. American Astronomical
    Society. <a href="https://doi.org/10.3847/1538-4357/ac15f9">https://doi.org/10.3847/1538-4357/ac15f9</a>'
  chicago: 'Yao, Yuhan, S. R. Kulkarni, Kevin B. Burdge, Ilaria Caiazzo, Kishalay
    De, Dillon Dong, C. Fremling, et al. “Multi-Wavelength Observations of AT2019wey:
    A New Candidate Black Hole Low-Mass X-Ray Binary.” <i>The Astrophysical Journal</i>.
    American Astronomical Society, 2021. <a href="https://doi.org/10.3847/1538-4357/ac15f9">https://doi.org/10.3847/1538-4357/ac15f9</a>.'
  ieee: 'Y. Yao <i>et al.</i>, “Multi-wavelength observations of AT2019wey: A new
    candidate black hole low-mass X-ray binary,” <i>The Astrophysical Journal</i>,
    vol. 920, no. 2. American Astronomical Society, 2021.'
  ista: 'Yao Y, Kulkarni SR, Burdge KB, Caiazzo I, De K, Dong D, Fremling C, Kasliwal
    MM, Kupfer T, van Roestel J, Sollerman J, Bagdasaryan A, Bellm EC, Cenko SB, Drake
    AJ, Duev DA, Graham MJ, Kaye S, Masci FJ, Miranda N, Prince TA, Riddle R, Rusholme
    B, Soumagnac MT. 2021. Multi-wavelength observations of AT2019wey: A new candidate
    black hole low-mass X-ray binary. The Astrophysical Journal. 920(2), 120.'
  mla: 'Yao, Yuhan, et al. “Multi-Wavelength Observations of AT2019wey: A New Candidate
    Black Hole Low-Mass X-Ray Binary.” <i>The Astrophysical Journal</i>, vol. 920,
    no. 2, 120, American Astronomical Society, 2021, doi:<a href="https://doi.org/10.3847/1538-4357/ac15f9">10.3847/1538-4357/ac15f9</a>.'
  short: Y. Yao, S.R. Kulkarni, K.B. Burdge, I. Caiazzo, K. De, D. Dong, C. Fremling,
    M.M. Kasliwal, T. Kupfer, J. van Roestel, J. Sollerman, A. Bagdasaryan, E.C. Bellm,
    S.B. Cenko, A.J. Drake, D.A. Duev, M.J. Graham, S. Kaye, F.J. Masci, N. Miranda,
    T.A. Prince, R. Riddle, B. Rusholme, M.T. Soumagnac, The Astrophysical Journal
    920 (2021).
date_created: 2024-03-26T10:32:06Z
date_published: 2021-10-21T00:00:00Z
date_updated: 2024-04-02T07:28:22Z
day: '21'
doi: 10.3847/1538-4357/ac15f9
extern: '1'
external_id:
  arxiv:
  - '2012.00169'
intvolume: '       920'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2012.00169
month: '10'
oa: 1
oa_version: Preprint
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: American Astronomical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Multi-wavelength observations of AT2019wey: A new candidate black hole low-mass
  X-ray binary'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 920
year: '2021'
...
---
_id: '15216'
abstract:
- lang: eng
  text: AM CVn systems are a rare type of accreting binary that consists of a white
    dwarf and a helium-rich, degenerate donor star. Using the Zwicky Transient Facility
    (ZTF), we searched for new AM CVn systems by focusing on blue, outbursting stars.
    We first selected outbursting stars using the ZTF alerts. We cross matched the
    candidates with Gaia and Pan-STARRS catalogs. The initial selection of candidates
    based on the Gaia BP-RP contains 1751 unknown objects. We used the Pan-STARRS
    g-r and r-i color in combination with the Gaia color to identify 59 strong AM
    CVn candidates. We obtained identification spectra of 35 sources, of which 18
    are high-priority candidates, and discovered nine new AM CVn systems and one magnetic
    CV that shows only He-ii lines. Using the outburst recurrence time, we estimate
    the orbital periods of the nine new AM CVn systems that are in the range of 29–50
    minutes. We conclude that targeted follow up of blue, outbursting sources is an
    efficient method to find new AM CVn systems and we plan to follow up all candidates
    we identified to systematically study the population of outbursting AM CVn systems.
article_number: '113'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jan
  full_name: van Roestel, Jan
  last_name: van Roestel
- first_name: Leah
  full_name: Creter, Leah
  last_name: Creter
- first_name: Thomas
  full_name: Kupfer, Thomas
  last_name: Kupfer
- first_name: Paula
  full_name: Szkody, Paula
  last_name: Szkody
- first_name: Jim
  full_name: Fuller, Jim
  last_name: Fuller
- first_name: Matthew J.
  full_name: Green, Matthew J.
  last_name: Green
- first_name: R. Michael
  full_name: Rich, R. Michael
  last_name: Rich
- first_name: John
  full_name: Sepikas, John
  last_name: Sepikas
- first_name: Kevin
  full_name: Burdge, Kevin
  last_name: Burdge
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Przemek
  full_name: Mróz, Przemek
  last_name: Mróz
- first_name: Thomas A.
  full_name: Prince, Thomas A.
  last_name: Prince
- first_name: Dmitry A.
  full_name: Duev, Dmitry A.
  last_name: Duev
- first_name: Matthew J.
  full_name: Graham, Matthew J.
  last_name: Graham
- first_name: David L.
  full_name: Shupe, David L.
  last_name: Shupe
- first_name: Russ R.
  full_name: Laher, Russ R.
  last_name: Laher
- first_name: Ashish A.
  full_name: Mahabal, Ashish A.
  last_name: Mahabal
- first_name: Frank J.
  full_name: Masci, Frank J.
  last_name: Masci
citation:
  ama: van Roestel J, Creter L, Kupfer T, et al. A systematic search for outbursting
    AM CVn systems with the Zwicky transient facility. <i>The Astronomical Journal</i>.
    2021;162(3). doi:<a href="https://doi.org/10.3847/1538-3881/ac0622">10.3847/1538-3881/ac0622</a>
  apa: van Roestel, J., Creter, L., Kupfer, T., Szkody, P., Fuller, J., Green, M.
    J., … Masci, F. J. (2021). A systematic search for outbursting AM CVn systems
    with the Zwicky transient facility. <i>The Astronomical Journal</i>. American
    Astronomical Society. <a href="https://doi.org/10.3847/1538-3881/ac0622">https://doi.org/10.3847/1538-3881/ac0622</a>
  chicago: Roestel, Jan van, Leah Creter, Thomas Kupfer, Paula Szkody, Jim Fuller,
    Matthew J. Green, R. Michael Rich, et al. “A Systematic Search for Outbursting
    AM CVn Systems with the Zwicky Transient Facility.” <i>The Astronomical Journal</i>.
    American Astronomical Society, 2021. <a href="https://doi.org/10.3847/1538-3881/ac0622">https://doi.org/10.3847/1538-3881/ac0622</a>.
  ieee: J. van Roestel <i>et al.</i>, “A systematic search for outbursting AM CVn
    systems with the Zwicky transient facility,” <i>The Astronomical Journal</i>,
    vol. 162, no. 3. American Astronomical Society, 2021.
  ista: van Roestel J, Creter L, Kupfer T, Szkody P, Fuller J, Green MJ, Rich RM,
    Sepikas J, Burdge K, Caiazzo I, Mróz P, Prince TA, Duev DA, Graham MJ, Shupe DL,
    Laher RR, Mahabal AA, Masci FJ. 2021. A systematic search for outbursting AM CVn
    systems with the Zwicky transient facility. The Astronomical Journal. 162(3),
    113.
  mla: van Roestel, Jan, et al. “A Systematic Search for Outbursting AM CVn Systems
    with the Zwicky Transient Facility.” <i>The Astronomical Journal</i>, vol. 162,
    no. 3, 113, American Astronomical Society, 2021, doi:<a href="https://doi.org/10.3847/1538-3881/ac0622">10.3847/1538-3881/ac0622</a>.
  short: J. van Roestel, L. Creter, T. Kupfer, P. Szkody, J. Fuller, M.J. Green, R.M.
    Rich, J. Sepikas, K. Burdge, I. Caiazzo, P. Mróz, T.A. Prince, D.A. Duev, M.J.
    Graham, D.L. Shupe, R.R. Laher, A.A. Mahabal, F.J. Masci, The Astronomical Journal
    162 (2021).
date_created: 2024-03-26T10:32:25Z
date_published: 2021-08-19T00:00:00Z
date_updated: 2024-04-02T07:28:50Z
day: '19'
doi: 10.3847/1538-3881/ac0622
extern: '1'
external_id:
  arxiv:
  - '2105.02261'
intvolume: '       162'
issue: '3'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2105.02261
month: '08'
oa: 1
oa_version: Preprint
publication: The Astronomical Journal
publication_identifier:
  eissn:
  - 1538-3881
  issn:
  - 0004-6256
publication_status: published
publisher: American Astronomical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: A systematic search for outbursting AM CVn systems with the Zwicky transient
  facility
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 162
year: '2021'
...
---
_id: '15218'
abstract:
- lang: eng
  text: "White dwarfs represent the last stage of evolution of stars with mass less
    than about eight times that of the Sun and, like other stars, are often found
    in binaries1,2. If the orbital period of the binary is short enough, energy losses
    from gravitational-wave radiation can shrink the orbit until the two white dwarfs
    come into contact and merge3. Depending on the component masses, the merger can
    lead to a supernova of type Ia or result in a massive white dwarf4. In the latter
    case, the white dwarf remnant is expected to be highly magnetized5,6 because of
    the strong magnetic dynamo that should arise during the merger, and be rapidly
    spinning from the conservation of the orbital angular momentum7. Here we report
    observations of a white dwarf, ZTF J190132.9+145808.7, that exhibits these properties,
    but to an extreme: a rotation period of 6.94 minutes, a magnetic field ranging
    between 600 megagauss and 900 megagauss over its surface, and a stellar radius
    of \r\n kilometres, only slightly larger than the radius of the Moon. Such a small
    radius implies that the star’s mass is close to the maximum white dwarf mass,
    or Chandrasekhar mass. ZTF J190132.9+145808.7 is likely to be cooling through
    the Urca processes (neutrino emission from electron capture on sodium) because
    of the high densities reached in its core."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Kevin B.
  full_name: Burdge, Kevin B.
  last_name: Burdge
- first_name: James
  full_name: Fuller, James
  last_name: Fuller
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: S. R.
  full_name: Kulkarni, S. R.
  last_name: Kulkarni
- first_name: Thomas A.
  full_name: Prince, Thomas A.
  last_name: Prince
- first_name: Harvey B.
  full_name: Richer, Harvey B.
  last_name: Richer
- first_name: Josiah
  full_name: Schwab, Josiah
  last_name: Schwab
- first_name: Igor
  full_name: Andreoni, Igor
  last_name: Andreoni
- first_name: Eric C.
  full_name: Bellm, Eric C.
  last_name: Bellm
- first_name: Andrew
  full_name: Drake, Andrew
  last_name: Drake
- first_name: Dmitry A.
  full_name: Duev, Dmitry A.
  last_name: Duev
- first_name: Matthew J.
  full_name: Graham, Matthew J.
  last_name: Graham
- first_name: George
  full_name: Helou, George
  last_name: Helou
- first_name: Ashish A.
  full_name: Mahabal, Ashish A.
  last_name: Mahabal
- first_name: Frank J.
  full_name: Masci, Frank J.
  last_name: Masci
- first_name: Roger
  full_name: Smith, Roger
  last_name: Smith
- first_name: Maayane T.
  full_name: Soumagnac, Maayane T.
  last_name: Soumagnac
citation:
  ama: Caiazzo I, Burdge KB, Fuller J, et al. A highly magnetized and rapidly rotating
    white dwarf as small as the Moon. <i>Nature</i>. 2021;595(7865):39-42. doi:<a
    href="https://doi.org/10.1038/s41586-021-03615-y">10.1038/s41586-021-03615-y</a>
  apa: Caiazzo, I., Burdge, K. B., Fuller, J., Heyl, J., Kulkarni, S. R., Prince,
    T. A., … Soumagnac, M. T. (2021). A highly magnetized and rapidly rotating white
    dwarf as small as the Moon. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-021-03615-y">https://doi.org/10.1038/s41586-021-03615-y</a>
  chicago: Caiazzo, Ilaria, Kevin B. Burdge, James Fuller, Jeremy Heyl, S. R. Kulkarni,
    Thomas A. Prince, Harvey B. Richer, et al. “A Highly Magnetized and Rapidly Rotating
    White Dwarf as Small as the Moon.” <i>Nature</i>. Springer Nature, 2021. <a href="https://doi.org/10.1038/s41586-021-03615-y">https://doi.org/10.1038/s41586-021-03615-y</a>.
  ieee: I. Caiazzo <i>et al.</i>, “A highly magnetized and rapidly rotating white
    dwarf as small as the Moon,” <i>Nature</i>, vol. 595, no. 7865. Springer Nature,
    pp. 39–42, 2021.
  ista: Caiazzo I, Burdge KB, Fuller J, Heyl J, Kulkarni SR, Prince TA, Richer HB,
    Schwab J, Andreoni I, Bellm EC, Drake A, Duev DA, Graham MJ, Helou G, Mahabal
    AA, Masci FJ, Smith R, Soumagnac MT. 2021. A highly magnetized and rapidly rotating
    white dwarf as small as the Moon. Nature. 595(7865), 39–42.
  mla: Caiazzo, Ilaria, et al. “A Highly Magnetized and Rapidly Rotating White Dwarf
    as Small as the Moon.” <i>Nature</i>, vol. 595, no. 7865, Springer Nature, 2021,
    pp. 39–42, doi:<a href="https://doi.org/10.1038/s41586-021-03615-y">10.1038/s41586-021-03615-y</a>.
  short: I. Caiazzo, K.B. Burdge, J. Fuller, J. Heyl, S.R. Kulkarni, T.A. Prince,
    H.B. Richer, J. Schwab, I. Andreoni, E.C. Bellm, A. Drake, D.A. Duev, M.J. Graham,
    G. Helou, A.A. Mahabal, F.J. Masci, R. Smith, M.T. Soumagnac, Nature 595 (2021)
    39–42.
date_created: 2024-03-26T10:33:03Z
date_published: 2021-06-30T00:00:00Z
date_updated: 2024-10-14T12:33:57Z
day: '30'
doi: 10.1038/s41586-021-03615-y
extern: '1'
external_id:
  arxiv:
  - '2107.08458'
intvolume: '       595'
issue: '7865'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2107.08458
month: '06'
oa: 1
oa_version: Preprint
page: 39-42
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41586-021-03799-3
scopus_import: '1'
status: public
title: A highly magnetized and rapidly rotating white dwarf as small as the Moon
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 595
year: '2021'
...
---
_id: '15219'
abstract:
- lang: eng
  text: We have carried out a search for massive white dwarfs (WDs) in the direction
    of young open star clusters using the Gaia DR2 database. The aim of this survey
    was (1) to provide robust data for new and previously known high-mass WDs regarding
    cluster membership, (2) to highlight WDs previously included in the initial final
    mass relation (IFMR) that are unlikely members of their respective clusters according
    to Gaia astrometry, and (3) to select an unequivocal WD sample that could then
    be compared with the host clusters' turnoff masses. All promising WD candidates
    in each cluster color–magnitude diagram were followed up with spectroscopy from
    Gemini in order to determine whether they were indeed WDs and derive their masses,
    temperatures, and ages. In order to be considered cluster members, white dwarfs
    were required to (1) have proper motions and parallaxes within 2σ, 3σ, or 4σ of
    those of their potential parent cluster based on how contaminated the field was
    in their region of the sky, (2) have a cooling age that was less than the cluster
    age, and (3) have a mass that was broadly consistent with the IFMR. A number of
    WDs included in current versions of the IFMR turned out to be nonmembers, and
    a number of apparent members, based on Gaia's astrometric data alone, were rejected,
    as their mass and/or cooling times were incompatible with cluster membership.
    In this way, we developed a highly selected IFMR sample for high-mass WDs that,
    surprisingly, contained no precursor masses significantly in excess of ∼ 6 M⊙.
article_number: '165'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Harvey B.
  full_name: Richer, Harvey B.
  last_name: Richer
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Helen
  full_name: Du, Helen
  last_name: Du
- first_name: Steffani
  full_name: Grondin, Steffani
  last_name: Grondin
- first_name: James
  full_name: Hegarty, James
  last_name: Hegarty
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: Ronan
  full_name: Kerr, Ronan
  last_name: Kerr
- first_name: David R.
  full_name: Miller, David R.
  last_name: Miller
- first_name: Sarah
  full_name: Thiele, Sarah
  last_name: Thiele
citation:
  ama: Richer HB, Caiazzo I, Du H, et al. Massive white dwarfs in young star clusters.
    <i>The Astrophysical Journal</i>. 2021;912(2). doi:<a href="https://doi.org/10.3847/1538-4357/abdeb7">10.3847/1538-4357/abdeb7</a>
  apa: Richer, H. B., Caiazzo, I., Du, H., Grondin, S., Hegarty, J., Heyl, J., … Thiele,
    S. (2021). Massive white dwarfs in young star clusters. <i>The Astrophysical Journal</i>.
    American Astronomical Society. <a href="https://doi.org/10.3847/1538-4357/abdeb7">https://doi.org/10.3847/1538-4357/abdeb7</a>
  chicago: Richer, Harvey B., Ilaria Caiazzo, Helen Du, Steffani Grondin, James Hegarty,
    Jeremy Heyl, Ronan Kerr, David R. Miller, and Sarah Thiele. “Massive White Dwarfs
    in Young Star Clusters.” <i>The Astrophysical Journal</i>. American Astronomical
    Society, 2021. <a href="https://doi.org/10.3847/1538-4357/abdeb7">https://doi.org/10.3847/1538-4357/abdeb7</a>.
  ieee: H. B. Richer <i>et al.</i>, “Massive white dwarfs in young star clusters,”
    <i>The Astrophysical Journal</i>, vol. 912, no. 2. American Astronomical Society,
    2021.
  ista: Richer HB, Caiazzo I, Du H, Grondin S, Hegarty J, Heyl J, Kerr R, Miller DR,
    Thiele S. 2021. Massive white dwarfs in young star clusters. The Astrophysical
    Journal. 912(2), 165.
  mla: Richer, Harvey B., et al. “Massive White Dwarfs in Young Star Clusters.” <i>The
    Astrophysical Journal</i>, vol. 912, no. 2, 165, American Astronomical Society,
    2021, doi:<a href="https://doi.org/10.3847/1538-4357/abdeb7">10.3847/1538-4357/abdeb7</a>.
  short: H.B. Richer, I. Caiazzo, H. Du, S. Grondin, J. Hegarty, J. Heyl, R. Kerr,
    D.R. Miller, S. Thiele, The Astrophysical Journal 912 (2021).
date_created: 2024-03-26T10:33:23Z
date_published: 2021-05-17T00:00:00Z
date_updated: 2024-04-03T14:11:17Z
day: '17'
doi: 10.3847/1538-4357/abdeb7
extern: '1'
external_id:
  arxiv:
  - '2101.08300'
intvolume: '       912'
issue: '2'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2101.08300
month: '05'
oa: 1
oa_version: Preprint
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: American Astronomical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Massive white dwarfs in young star clusters
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 912
year: '2021'
...
---
_id: '15222'
abstract:
- lang: eng
  text: We describe an implementation of a broad-band soft X-ray polarimeter, substantially
    based on previous designs. The Globe-Orbiting Soft X-ray Polarimeter (GOSoX) is
    a SmallSat. As in a related mission concept the PiSoX Polarimeter, the grating
    arrangement is designed optimally for the purpose of polarimetry matching the
    dispersion of a spectrometer to a laterally graded multilayer (LGML). For GOSoX,
    the optics are lightweight Si mirrors in a one-bounce parabolic configuration.
    The instrument covers the wavelength range from 31 A to 75 A (165 - 400 eV). Upon
    satellite rotation, the intensities of the dispersed spectra, after reflection
    and polarizing by the LGMLs, give the three Stokes parameters needed to determine
    a source's linear polarization fraction and orientation. The design can be extended
    to higher energies as LGMLs are developed further. We describe the potential scientific
    return and the proposed mission concept following the results of a JPL Team X
    concept study.
article_processing_charge: No
author:
- first_name: Herman L.
  full_name: Marshall, Herman L.
  last_name: Marshall
- first_name: Sarah
  full_name: Heine, Sarah
  last_name: Heine
- first_name: Rosemary
  full_name: Davidson, Rosemary
  last_name: Davidson
- first_name: Alan
  full_name: Garner, Alan
  last_name: Garner
- first_name: Eric
  full_name: Gullikson, Eric
  last_name: Gullikson
- first_name: Moritz
  full_name: Günther, Moritz
  last_name: Günther
- first_name: Christopher
  full_name: Leitz, Christopher
  last_name: Leitz
- first_name: Rebecca
  full_name: Masterson, Rebecca
  last_name: Masterson
- first_name: Eric
  full_name: Miller, Eric
  last_name: Miller
- first_name: June S.
  full_name: Stenzel, June S.
  last_name: Stenzel
- first_name: William W.
  full_name: Zhang, William W.
  last_name: Zhang
- first_name: Rozenn
  full_name: Boissay-Malaquin, Rozenn
  last_name: Boissay-Malaquin
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Deepto
  full_name: Chakrabarty, Deepto
  last_name: Chakrabarty
- first_name: Luigi
  full_name: Gallo, Luigi
  last_name: Gallo
- first_name: Ralf
  full_name: Heilmann, Ralf
  last_name: Heilmann
- first_name: Jeremy
  full_name: Heyl, Jeremy
  last_name: Heyl
- first_name: Erin
  full_name: Kara, Erin
  last_name: Kara
- first_name: Norbert
  full_name: Schulz, Norbert
  last_name: Schulz
citation:
  ama: 'Marshall HL, Heine S, Davidson R, et al. The Globe Orbiting Soft X-ray (GOSoX)
    polarimeter concept study. In: <i>Optics for EUV, X-Ray, and Gamma-Ray Astronomy
    X</i>. Vol 11822. SPIE; 2021. doi:<a href="https://doi.org/10.1117/12.2596186">10.1117/12.2596186</a>'
  apa: 'Marshall, H. L., Heine, S., Davidson, R., Garner, A., Gullikson, E., Günther,
    M., … Schulz, N. (2021). The Globe Orbiting Soft X-ray (GOSoX) polarimeter concept
    study. In <i>Optics for EUV, X-Ray, and Gamma-Ray Astronomy X</i> (Vol. 11822).
    San Diego, CA, United States: SPIE. <a href="https://doi.org/10.1117/12.2596186">https://doi.org/10.1117/12.2596186</a>'
  chicago: Marshall, Herman L., Sarah Heine, Rosemary Davidson, Alan Garner, Eric
    Gullikson, Moritz Günther, Christopher Leitz, et al. “The Globe Orbiting Soft
    X-Ray (GOSoX) Polarimeter Concept Study.” In <i>Optics for EUV, X-Ray, and Gamma-Ray
    Astronomy X</i>, Vol. 11822. SPIE, 2021. <a href="https://doi.org/10.1117/12.2596186">https://doi.org/10.1117/12.2596186</a>.
  ieee: H. L. Marshall <i>et al.</i>, “The Globe Orbiting Soft X-ray (GOSoX) polarimeter
    concept study,” in <i>Optics for EUV, X-Ray, and Gamma-Ray Astronomy X</i>, San
    Diego, CA, United States, 2021, vol. 11822.
  ista: Marshall HL, Heine S, Davidson R, Garner A, Gullikson E, Günther M, Leitz
    C, Masterson R, Miller E, Stenzel JS, Zhang WW, Boissay-Malaquin R, Caiazzo I,
    Chakrabarty D, Gallo L, Heilmann R, Heyl J, Kara E, Schulz N. 2021. The Globe
    Orbiting Soft X-ray (GOSoX) polarimeter concept study. Optics for EUV, X-Ray,
    and Gamma-Ray Astronomy X. Optical Engineering + Applications vol. 11822.
  mla: Marshall, Herman L., et al. “The Globe Orbiting Soft X-Ray (GOSoX) Polarimeter
    Concept Study.” <i>Optics for EUV, X-Ray, and Gamma-Ray Astronomy X</i>, vol.
    11822, SPIE, 2021, doi:<a href="https://doi.org/10.1117/12.2596186">10.1117/12.2596186</a>.
  short: H.L. Marshall, S. Heine, R. Davidson, A. Garner, E. Gullikson, M. Günther,
    C. Leitz, R. Masterson, E. Miller, J.S. Stenzel, W.W. Zhang, R. Boissay-Malaquin,
    I. Caiazzo, D. Chakrabarty, L. Gallo, R. Heilmann, J. Heyl, E. Kara, N. Schulz,
    in:, Optics for EUV, X-Ray, and Gamma-Ray Astronomy X, SPIE, 2021.
conference:
  end_date: 2021-08-05
  location: San Diego, CA, United States
  name: Optical Engineering + Applications
  start_date: 2021-08-01
date_created: 2024-03-26T10:34:21Z
date_published: 2021-08-21T00:00:00Z
date_updated: 2024-04-03T14:13:09Z
day: '21'
doi: 10.1117/12.2596186
extern: '1'
intvolume: '     11822'
language:
- iso: eng
month: '08'
oa_version: None
publication: Optics for EUV, X-Ray, and Gamma-Ray Astronomy X
publication_status: published
publisher: SPIE
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Globe Orbiting Soft X-ray (GOSoX) polarimeter concept study
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11822
year: '2021'
...
---
_id: '15254'
abstract:
- lang: eng
  text: We consider the problem of reliable communication over a network containing
    a hidden myopic adversary who can eavesdrop on some zro links, jam some zwo links,
    and do both on some zrw links. We provide the first information-theoretically
    tight characterization of the optimal rate of communication possible under all
    possible settings of the tuple (zro,zwo,zrw) by providing a novel coding scheme/analysis
    for a subset of parameter regimes. In particular, our vanishing-error schemes
    bypass the Network Singleton Bound (which requires a zero-error recovery criteria)
    in a certain parameter regime where the capacity had been heretofore open. As
    a direct corollary we also obtain the capacity of the corresponding problem where
    information-theoretic secrecy against eavesdropping is required in addition to
    reliable communication.
acknowledgement: The work of Rawad Bitar was supported in part by the Technical University
  of Munich—Institute for Advanced Studies, funded by the German Excellence Initiative
  and European Union Seventh Framework Programme under Grant 291763. The work of Sidharth
  Jaggi was supported by the Hong Kong UGC GRF under Grant 14304418, Grant 14300617,
  and Grant 14313116. The work of Yihan Zhang was supported by the European Union’s
  Horizon 2020 Research and Innovation Programme under Grant 682203-ERC-[Inf-Speed-Tradeoff].
  Preliminary results were presented at IEEE International Symposium on information
  Theory (ISIT).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Sijie
  full_name: Li, Sijie
  last_name: Li
- first_name: Rawad
  full_name: Bitar, Rawad
  last_name: Bitar
- first_name: Sidharth
  full_name: Jaggi, Sidharth
  last_name: Jaggi
- first_name: Yihan
  full_name: Zhang, Yihan
  id: 2ce5da42-b2ea-11eb-bba5-9f264e9d002c
  last_name: Zhang
  orcid: 0000-0002-6465-6258
citation:
  ama: Li S, Bitar R, Jaggi S, Zhang Y. Network coding with myopic adversaries. <i>IEEE
    Journal on Selected Areas in Information Theory</i>. 2021;2(4):1108-1119. doi:<a
    href="https://doi.org/10.1109/JSAIT.2021.3126474">10.1109/JSAIT.2021.3126474</a>
  apa: Li, S., Bitar, R., Jaggi, S., &#38; Zhang, Y. (2021). Network coding with myopic
    adversaries. <i>IEEE Journal on Selected Areas in Information Theory</i>. IEEE.
    <a href="https://doi.org/10.1109/JSAIT.2021.3126474">https://doi.org/10.1109/JSAIT.2021.3126474</a>
  chicago: Li, Sijie, Rawad Bitar, Sidharth Jaggi, and Yihan Zhang. “Network Coding
    with Myopic Adversaries.” <i>IEEE Journal on Selected Areas in Information Theory</i>.
    IEEE, 2021. <a href="https://doi.org/10.1109/JSAIT.2021.3126474">https://doi.org/10.1109/JSAIT.2021.3126474</a>.
  ieee: S. Li, R. Bitar, S. Jaggi, and Y. Zhang, “Network coding with myopic adversaries,”
    <i>IEEE Journal on Selected Areas in Information Theory</i>, vol. 2, no. 4. IEEE,
    pp. 1108–1119, 2021.
  ista: Li S, Bitar R, Jaggi S, Zhang Y. 2021. Network coding with myopic adversaries.
    IEEE Journal on Selected Areas in Information Theory. 2(4), 1108–1119.
  mla: Li, Sijie, et al. “Network Coding with Myopic Adversaries.” <i>IEEE Journal
    on Selected Areas in Information Theory</i>, vol. 2, no. 4, IEEE, 2021, pp. 1108–19,
    doi:<a href="https://doi.org/10.1109/JSAIT.2021.3126474">10.1109/JSAIT.2021.3126474</a>.
  short: S. Li, R. Bitar, S. Jaggi, Y. Zhang, IEEE Journal on Selected Areas in Information
    Theory 2 (2021) 1108–1119.
date_created: 2024-03-31T22:01:13Z
date_published: 2021-12-01T00:00:00Z
date_updated: 2024-04-02T08:31:59Z
day: '01'
department:
- _id: MaMo
doi: 10.1109/JSAIT.2021.3126474
external_id:
  arxiv:
  - '2102.09885'
intvolume: '         2'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2102.09885
month: '12'
oa: 1
oa_version: Preprint
page: 1108-1119
publication: IEEE Journal on Selected Areas in Information Theory
publication_identifier:
  eissn:
  - 2641-8770
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Network coding with myopic adversaries
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2021'
...
---
_id: '15259'
abstract:
- lang: eng
  text: "We consider words Gi1⋯Gim involving i.i.d. complex Ginibre matrices and study
    tracial expressions of their eigenvalues and singular values. We show that the
    limit distribution of the squared singular values of every word of length m is
    a Fuss–Catalan distribution with parameter \r\nm+1. This generalizes previous
    results concerning powers of a complex Ginibre matrix and products of independent
    Ginibre matrices. In addition, we find other combinatorial parameters of the word
    that determine the second-order limits of the spectral statistics. For instance,
    the so-called coperiod of a word characterizes the fluctuations of the eigenvalues.
    We extend these results to words of general non-Hermitian matrices with i.i.d.
    entries under moment-matching assumptions, band matrices, and sparse matrices.\r\nThese
    results rely on the moments method and genus expansion, relating Gaussian matrix
    integrals to the counting of compact orientable surfaces of a given genus. This
    allows us to derive a central limit theorem for the trace of any word of complex
    Ginibre matrices and their conjugate transposes, where all parameters are defined
    topologically."
acknowledgement: "The authors would like to thank Gernot Akemann, Benson Au, Paul
  Bourgade, Jesper Ipsen, Camille Male, Jamie Mingo, Doron Puder, Emily Redelmeier,
  Roland Speicher, Wojciech Tarnowski and Ofer Zeitouni for useful discussions, comments
  and references as well as the anonymous referee for a suggestion that greatly improved
  one of the theorems.\r\nG.D. gratefully acknowledges support from the grants NSF
  DMS-1812114 of P. Bourgade (PI) and NSF CAREER DMS-1653602 of L.-P. Arguin (PI),
  as well as the European Union’s Horizon 2020 research and innovation programme under
  the Marie Skłodowska-Curie Grant Agreement No. 754411."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Guillaume
  full_name: Dubach, Guillaume
  id: D5C6A458-10C4-11EA-ABF4-A4B43DDC885E
  last_name: Dubach
  orcid: 0000-0001-6892-8137
- first_name: Yuval
  full_name: Peled, Yuval
  last_name: Peled
citation:
  ama: Dubach G, Peled Y. On words of non-Hermitian random matrices. <i>The Annals
    of Probability</i>. 2021;49(4):1886-1916. doi:<a href="https://doi.org/10.1214/20-aop1496">10.1214/20-aop1496</a>
  apa: Dubach, G., &#38; Peled, Y. (2021). On words of non-Hermitian random matrices.
    <i>The Annals of Probability</i>. Institute of Mathematical Statistics. <a href="https://doi.org/10.1214/20-aop1496">https://doi.org/10.1214/20-aop1496</a>
  chicago: Dubach, Guillaume, and Yuval Peled. “On Words of Non-Hermitian Random Matrices.”
    <i>The Annals of Probability</i>. Institute of Mathematical Statistics, 2021.
    <a href="https://doi.org/10.1214/20-aop1496">https://doi.org/10.1214/20-aop1496</a>.
  ieee: G. Dubach and Y. Peled, “On words of non-Hermitian random matrices,” <i>The
    Annals of Probability</i>, vol. 49, no. 4. Institute of Mathematical Statistics,
    pp. 1886–1916, 2021.
  ista: Dubach G, Peled Y. 2021. On words of non-Hermitian random matrices. The Annals
    of Probability. 49(4), 1886–1916.
  mla: Dubach, Guillaume, and Yuval Peled. “On Words of Non-Hermitian Random Matrices.”
    <i>The Annals of Probability</i>, vol. 49, no. 4, Institute of Mathematical Statistics,
    2021, pp. 1886–916, doi:<a href="https://doi.org/10.1214/20-aop1496">10.1214/20-aop1496</a>.
  short: G. Dubach, Y. Peled, The Annals of Probability 49 (2021) 1886–1916.
corr_author: '1'
date_created: 2024-04-03T07:19:42Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2025-09-10T10:13:20Z
day: '01'
department:
- _id: LaEr
doi: 10.1214/20-aop1496
ec_funded: 1
external_id:
  arxiv:
  - '1904.04312'
  isi:
  - '000681349000008'
intvolume: '        49'
isi: 1
issue: '4'
keyword:
- Statistics
- Probability and Uncertainty
- Statistics and Probability
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1904.04312
month: '07'
oa: 1
oa_version: Preprint
page: 1886-1916
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: The Annals of Probability
publication_identifier:
  issn:
  - 0091-1798
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: On words of non-Hermitian random matrices
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 49
year: '2021'
...
---
_id: '15260'
abstract:
- lang: eng
  text: Significant advances in the synthesis and processing of colloidal nanocrystals
    have given scientists and engineers access to a vast library of building blocks
    with precisely defined size, shape, and composition. These materials have inspired
    exciting prospects to enable bottom-up fabrication of programmable materials with
    properties by design. Successfully assembling and connecting the building blocks
    into superstructures in which constituent nanocrystals can purposefully interact
    requires robust understanding of and control over a complex interplay of dynamic
    physicochemical processes. Fluid interfaces provide an advantageous experimental
    workbench to both probe and control these processes. Despite the ostensible simplicity
    of fabricating nanocrystal assemblies at a fluid interface, sensitivity to processing
    conditions and limited reproducibility have underscored the complexity of this
    process. In situ studies have provided mechanistic insights into the competing
    dynamics of key subprocesses including solvent spreading and evaporation, superlattice
    formation, ligand detachment kinetics, and nanocrystal attachment. Understanding
    how these subprocesses influence the complex choreography of self-assembly, structure
    transformation, and oriented attachment processes presents a rich research challenge.
    In this context, we present a detailed methodology for self-assembly and attachment
    of lead chalcogenide nanocrystals at a liquid–gas interface as a model system
    for the fabrication of mono- and multilayer cubic connected superlattices. We
    discuss key experimental parameters such as the characteristics of the building
    blocks and processing conditions and detailed steps from colloidal nanocrystal
    injection to superlattice transfer. We hope that this Methods/Protocols paper
    will provide guidance for future advances in the exciting path toward bringing
    the prospect of nanocrystal-based programmable materials to fruition.
article_processing_charge: No
article_type: original
author:
- first_name: Jessica
  full_name: Cimada daSilva, Jessica
  last_name: Cimada daSilva
- first_name: Daniel
  full_name: Balazs, Daniel
  id: 302BADF6-85FC-11EA-9E3B-B9493DDC885E
  last_name: Balazs
  orcid: 0000-0001-7597-043X
- first_name: Tyler A.
  full_name: Dunbar, Tyler A.
  last_name: Dunbar
- first_name: Tobias
  full_name: Hanrath, Tobias
  last_name: Hanrath
citation:
  ama: Cimada daSilva J, Balazs D, Dunbar TA, Hanrath T. Fundamental processes and
    practical considerations of lead chalcogenide mesocrystals formed via self-assembly
    and directed attachment of nanocrystals at a fluid interface. <i>Chemistry of
    Materials</i>. 2021;33(24):9457-9472. doi:<a href="https://doi.org/10.1021/acs.chemmater.1c02910">10.1021/acs.chemmater.1c02910</a>
  apa: Cimada daSilva, J., Balazs, D., Dunbar, T. A., &#38; Hanrath, T. (2021). Fundamental
    processes and practical considerations of lead chalcogenide mesocrystals formed
    via self-assembly and directed attachment of nanocrystals at a fluid interface.
    <i>Chemistry of Materials</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.chemmater.1c02910">https://doi.org/10.1021/acs.chemmater.1c02910</a>
  chicago: Cimada daSilva, Jessica, Daniel Balazs, Tyler A. Dunbar, and Tobias Hanrath.
    “Fundamental Processes and Practical Considerations of Lead Chalcogenide Mesocrystals
    Formed via Self-Assembly and Directed Attachment of Nanocrystals at a Fluid Interface.”
    <i>Chemistry of Materials</i>. American Chemical Society, 2021. <a href="https://doi.org/10.1021/acs.chemmater.1c02910">https://doi.org/10.1021/acs.chemmater.1c02910</a>.
  ieee: J. Cimada daSilva, D. Balazs, T. A. Dunbar, and T. Hanrath, “Fundamental processes
    and practical considerations of lead chalcogenide mesocrystals formed via self-assembly
    and directed attachment of nanocrystals at a fluid interface,” <i>Chemistry of
    Materials</i>, vol. 33, no. 24. American Chemical Society, pp. 9457–9472, 2021.
  ista: Cimada daSilva J, Balazs D, Dunbar TA, Hanrath T. 2021. Fundamental processes
    and practical considerations of lead chalcogenide mesocrystals formed via self-assembly
    and directed attachment of nanocrystals at a fluid interface. Chemistry of Materials.
    33(24), 9457–9472.
  mla: Cimada daSilva, Jessica, et al. “Fundamental Processes and Practical Considerations
    of Lead Chalcogenide Mesocrystals Formed via Self-Assembly and Directed Attachment
    of Nanocrystals at a Fluid Interface.” <i>Chemistry of Materials</i>, vol. 33,
    no. 24, American Chemical Society, 2021, pp. 9457–72, doi:<a href="https://doi.org/10.1021/acs.chemmater.1c02910">10.1021/acs.chemmater.1c02910</a>.
  short: J. Cimada daSilva, D. Balazs, T.A. Dunbar, T. Hanrath, Chemistry of Materials
    33 (2021) 9457–9472.
date_created: 2024-04-03T07:23:30Z
date_published: 2021-12-16T00:00:00Z
date_updated: 2024-04-03T13:50:53Z
day: '16'
department:
- _id: LifeSc
doi: 10.1021/acs.chemmater.1c02910
intvolume: '        33'
issue: '24'
keyword:
- Materials Chemistry
- General Chemical Engineering
- General Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.osti.gov/servlets/purl/1836502
month: '12'
oa: 1
oa_version: Submitted Version
page: 9457-9472
publication: Chemistry of Materials
publication_identifier:
  eissn:
  - 1520-5002
  issn:
  - 0897-4756
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fundamental processes and practical considerations of lead chalcogenide mesocrystals
  formed via self-assembly and directed attachment of nanocrystals at a fluid interface
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2021'
...
---
OA_place: publisher
OA_type: free access
_id: '15261'
abstract:
- lang: eng
  text: In this article, we study uniqueness of form extensions in a rather general
    setting. The method is based on the theory of ordered Hilbert spaces and the concept
    of domination of semigroups. Our main abstract result transfers uniqueness of
    form extension of a dominating form to that of a dominated form. This result can
    be applied to a multitude of examples including various magnetic Schrödinger forms
    on graphs and on manifolds.
article_number: '108848'
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
  full_name: Lenz, Daniel
  last_name: Lenz
- first_name: Marcel
  full_name: Schmidt, Marcel
  last_name: Schmidt
- first_name: Melchior
  full_name: Wirth, Melchior
  id: 88644358-0A0E-11EA-8FA5-49A33DDC885E
  last_name: Wirth
  orcid: 0000-0002-0519-4241
citation:
  ama: Lenz D, Schmidt M, Wirth M. Uniqueness of form extensions and domination of
    semigroups. <i>Journal of Functional Analysis</i>. 2021;280(6). doi:<a href="https://doi.org/10.1016/j.jfa.2020.108848">10.1016/j.jfa.2020.108848</a>
  apa: Lenz, D., Schmidt, M., &#38; Wirth, M. (2021). Uniqueness of form extensions
    and domination of semigroups. <i>Journal of Functional Analysis</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.jfa.2020.108848">https://doi.org/10.1016/j.jfa.2020.108848</a>
  chicago: Lenz, Daniel, Marcel Schmidt, and Melchior Wirth. “Uniqueness of Form Extensions
    and Domination of Semigroups.” <i>Journal of Functional Analysis</i>. Elsevier,
    2021. <a href="https://doi.org/10.1016/j.jfa.2020.108848">https://doi.org/10.1016/j.jfa.2020.108848</a>.
  ieee: D. Lenz, M. Schmidt, and M. Wirth, “Uniqueness of form extensions and domination
    of semigroups,” <i>Journal of Functional Analysis</i>, vol. 280, no. 6. Elsevier,
    2021.
  ista: Lenz D, Schmidt M, Wirth M. 2021. Uniqueness of form extensions and domination
    of semigroups. Journal of Functional Analysis. 280(6), 108848.
  mla: Lenz, Daniel, et al. “Uniqueness of Form Extensions and Domination of Semigroups.”
    <i>Journal of Functional Analysis</i>, vol. 280, no. 6, 108848, Elsevier, 2021,
    doi:<a href="https://doi.org/10.1016/j.jfa.2020.108848">10.1016/j.jfa.2020.108848</a>.
  short: D. Lenz, M. Schmidt, M. Wirth, Journal of Functional Analysis 280 (2021).
corr_author: '1'
date_created: 2024-04-03T07:24:57Z
date_published: 2021-03-15T00:00:00Z
date_updated: 2026-06-18T17:46:54Z
day: '15'
ddc:
- '500'
department:
- _id: JaMa
doi: 10.1016/j.jfa.2020.108848
intvolume: '       280'
issue: '6'
keyword:
- Analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.jfa.2020.108848
month: '03'
oa: 1
oa_version: Published Version
publication: Journal of Functional Analysis
publication_identifier:
  eissn:
  - 1096-0783
  issn:
  - 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Uniqueness of form extensions and domination of semigroups
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 280
year: '2021'
...
---
_id: '15263'
abstract:
- lang: eng
  text: We develop a new Riemannian descent algorithm that relies on momentum to improve
    over existing first-order methods for geodesically convex optimization. In contrast,
    accelerated convergence rates proved in prior work have only been shown to hold
    for geodesically strongly-convex objective functions. We further extend our algorithm
    to geodesically weakly-quasi-convex objectives. Our proofs of convergence rely
    on a novel estimate sequence that illustrates the dependency of the convergence
    rate on the curvature of the manifold. We validate our theoretical results empirically
    on several optimization problems defined on the sphere and on the manifold of
    positive definite matrices.
acknowledgement: The authors would like to thank professors Nicolas Boumal and Suvrit
  Sra for helpful discussions on the content of this paper. Gary Bécigneul was funded
  by the Max Planck ETH Center for Learning Systems during the course of this work.
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Foivos
  full_name: Alimisis, Foivos
  id: 19430a34-05f6-11ef-890d-c079cfc60ae2
  last_name: Alimisis
- first_name: Antonio
  full_name: Orvieto, Antonio
  last_name: Orvieto
- first_name: Gary
  full_name: Becigneul, Gary
  last_name: Becigneul
- first_name: Aurelien
  full_name: Lucchi, Aurelien
  last_name: Lucchi
citation:
  ama: 'Alimisis F, Orvieto A, Becigneul G, Lucchi A. Momentum improves optimization
    on Riemannian manifolds. In: <i>Proceedings of the 24th International Conference
    on Artificial Intelligence and Statistics</i>. Vol 130. ML Research Press; 2021:1351-1359.'
  apa: 'Alimisis, F., Orvieto, A., Becigneul, G., &#38; Lucchi, A. (2021). Momentum
    improves optimization on Riemannian manifolds. In <i>Proceedings of the 24th International
    Conference on Artificial Intelligence and Statistics</i> (Vol. 130, pp. 1351–1359).
    San Diego, CA, United States; Virtual: ML Research Press.'
  chicago: Alimisis, Foivos, Antonio Orvieto, Gary Becigneul, and Aurelien Lucchi.
    “Momentum Improves Optimization on Riemannian Manifolds.” In <i>Proceedings of
    the 24th International Conference on Artificial Intelligence and Statistics</i>,
    130:1351–59. ML Research Press, 2021.
  ieee: F. Alimisis, A. Orvieto, G. Becigneul, and A. Lucchi, “Momentum improves optimization
    on Riemannian manifolds,” in <i>Proceedings of the 24th International Conference
    on Artificial Intelligence and Statistics</i>, San Diego, CA, United States; Virtual,
    2021, vol. 130, pp. 1351–1359.
  ista: 'Alimisis F, Orvieto A, Becigneul G, Lucchi A. 2021. Momentum improves optimization
    on Riemannian manifolds. Proceedings of the 24th International Conference on Artificial
    Intelligence and Statistics. AISTATS: Conference on Artificial Intelligence and
    Statistics, PMLR, vol. 130, 1351–1359.'
  mla: Alimisis, Foivos, et al. “Momentum Improves Optimization on Riemannian Manifolds.”
    <i>Proceedings of the 24th International Conference on Artificial Intelligence
    and Statistics</i>, vol. 130, ML Research Press, 2021, pp. 1351–59.
  short: F. Alimisis, A. Orvieto, G. Becigneul, A. Lucchi, in:, Proceedings of the
    24th International Conference on Artificial Intelligence and Statistics, ML Research
    Press, 2021, pp. 1351–1359.
conference:
  end_date: 2021-04-15
  location: San Diego, CA, United States; Virtual
  name: 'AISTATS: Conference on Artificial Intelligence and Statistics'
  start_date: 2021-04-13
date_created: 2024-04-03T07:29:49Z
date_published: 2021-04-15T00:00:00Z
date_updated: 2026-06-18T17:47:19Z
day: '15'
ddc:
- '000'
department:
- _id: DaAl
external_id:
  arxiv:
  - '2002.04144'
intvolume: '       130'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://proceedings.mlr.press/v130/alimisis21a.html
month: '04'
oa: 1
oa_version: Published Version
page: 1351-1359
publication: Proceedings of the 24th International Conference on Artificial Intelligence
  and Statistics
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
status: public
title: Momentum improves optimization on Riemannian manifolds
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 130
year: '2021'
...
---
_id: '15264'
abstract:
- lang: eng
  text: Signaling by the B cell antigen receptor (BCR) initiates actin remodeling.
    The assembly of branched actin networks that are nucleated by the Arp2/3 complex
    exert outward force on the plasma membrane, allowing B cells to form membrane
    protrusions that can scan the surface of antigen-presenting cells (APCs). The
    resulting Arp2/3 complex-dependent actin retrograde flow promotes the centripetal
    movement and progressive coalescence of BCR microclusters, which amplifies BCR
    signaling. Glia maturation factor γ (GMFγ) is an actin disassembly-protein that
    releases Arp2/3 complex-nucleated actin filaments from actin networks. By doing
    so, GMFγ could either oppose the actions of the Arp2/3 complex or support Arp2/3
    complex-nucleated actin polymerization by contributing to the recycling of actin
    monomers and Arp2/3 complexes. We now show that reducing the levels of GMFγ in
    human B cell lines via transfection with a specific siRNA impairs the ability
    of B cells to spread on antigen-coated surfaces, decreases the velocity of actin
    retrograde flow, diminishes the coalescence of BCR microclusters into a central
    cluster at the B cell-APC contact site, and decreases APC-induced BCR signaling.
    These effects of depleting GMFγ are similar to what occurs when the Arp2/3 complex
    is inhibited. This suggests that GMFγ cooperates with the Arp2/3 complex to support
    BCR-induced actin remodeling and amplify BCR signaling at the immune synapse.
article_number: '647063'
article_processing_charge: No
article_type: original
author:
- first_name: Nikola
  full_name: Deretic, Nikola
  last_name: Deretic
- first_name: Madison
  full_name: Bolger-Munro, Madison
  id: 516F03FA-93A3-11EA-A7C5-D6BE3DDC885E
  last_name: Bolger-Munro
  orcid: 0000-0002-8176-4824
- first_name: Kate
  full_name: Choi, Kate
  last_name: Choi
- first_name: Libin
  full_name: Abraham, Libin
  last_name: Abraham
- first_name: Michael R.
  full_name: Gold, Michael R.
  last_name: Gold
citation:
  ama: Deretic N, Bolger-Munro M, Choi K, Abraham L, Gold MR. The actin-disassembly
    protein glia maturation factor γ enhances actin remodeling and B cell antigen
    receptor signaling at the immune synapse. <i>Frontiers in Cell and Developmental
    Biology</i>. 2021;9. doi:<a href="https://doi.org/10.3389/fcell.2021.647063">10.3389/fcell.2021.647063</a>
  apa: Deretic, N., Bolger-Munro, M., Choi, K., Abraham, L., &#38; Gold, M. R. (2021).
    The actin-disassembly protein glia maturation factor γ enhances actin remodeling
    and B cell antigen receptor signaling at the immune synapse. <i>Frontiers in Cell
    and Developmental Biology</i>. Frontiers Media. <a href="https://doi.org/10.3389/fcell.2021.647063">https://doi.org/10.3389/fcell.2021.647063</a>
  chicago: Deretic, Nikola, Madison Bolger-Munro, Kate Choi, Libin Abraham, and Michael
    R. Gold. “The Actin-Disassembly Protein Glia Maturation Factor γ Enhances Actin
    Remodeling and B Cell Antigen Receptor Signaling at the Immune Synapse.” <i>Frontiers
    in Cell and Developmental Biology</i>. Frontiers Media, 2021. <a href="https://doi.org/10.3389/fcell.2021.647063">https://doi.org/10.3389/fcell.2021.647063</a>.
  ieee: N. Deretic, M. Bolger-Munro, K. Choi, L. Abraham, and M. R. Gold, “The actin-disassembly
    protein glia maturation factor γ enhances actin remodeling and B cell antigen
    receptor signaling at the immune synapse,” <i>Frontiers in Cell and Developmental
    Biology</i>, vol. 9. Frontiers Media, 2021.
  ista: Deretic N, Bolger-Munro M, Choi K, Abraham L, Gold MR. 2021. The actin-disassembly
    protein glia maturation factor γ enhances actin remodeling and B cell antigen
    receptor signaling at the immune synapse. Frontiers in Cell and Developmental
    Biology. 9, 647063.
  mla: Deretic, Nikola, et al. “The Actin-Disassembly Protein Glia Maturation Factor
    γ Enhances Actin Remodeling and B Cell Antigen Receptor Signaling at the Immune
    Synapse.” <i>Frontiers in Cell and Developmental Biology</i>, vol. 9, 647063,
    Frontiers Media, 2021, doi:<a href="https://doi.org/10.3389/fcell.2021.647063">10.3389/fcell.2021.647063</a>.
  short: N. Deretic, M. Bolger-Munro, K. Choi, L. Abraham, M.R. Gold, Frontiers in
    Cell and Developmental Biology 9 (2021).
date_created: 2024-04-03T07:34:08Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2024-04-03T14:10:25Z
day: '01'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.3389/fcell.2021.647063
external_id:
  pmid:
  - '34336818'
file:
- access_level: open_access
  checksum: f6330b5c6718d6780383c0300fd4ef12
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-03T14:08:05Z
  date_updated: 2024-04-03T14:08:05Z
  file_id: '15291'
  file_name: 2021_Frontiers_Deretic.pdf
  file_size: 7430029
  relation: main_file
  success: 1
file_date_updated: 2024-04-03T14:08:05Z
has_accepted_license: '1'
intvolume: '         9'
keyword:
- Cell Biology
- Developmental Biology
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: Frontiers in Cell and Developmental Biology
publication_identifier:
  issn:
  - 2296-634X
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: The actin-disassembly protein glia maturation factor γ enhances actin remodeling
  and B cell antigen receptor signaling at the immune synapse
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2021'
...
---
_id: '15265'
abstract:
- lang: eng
  text: 'The highly enhanced thermoelectric figure of merit, zT ≈ 2.6 at 573 K, obtained
    recently in Cd-doped polycrystalline AgSbTe2 by Roychowdhury et al. ( Science
    2021, 371, 722) brings it to the forefront of thermoelectric and energy materials
    research. Ag/Sb cationic ordering in polycrystalline AgSbTe2 was a challenging
    issue for a long time: their ordered arrangement in the cationic sublattice in
    polycrystalline samples remained elusive despite multiple theoretical predictions
    and experimental studies. Recently, selective cation doping has been used to enhance
    the Ag/Sb ordering, and cation ordered nanoscale (2–4 nm) domains were observed
    in polycrystalline AgSbTe2, which reduce lattice thermal conductivity. The enhanced
    cation ordering also delocalizes disorder-induced localized electronic states,
    and consequently the electronic transport enhances. In this Focus Review, we provide
    the details of the rational design of a high-performance thermoelectric material
    using the recently developed atomic order–disorder optimization strategy with
    AgSbTe2 as an example. Atomic disorder is ubiquitous in most thermoelectric materials,
    and the atomic order–disorder optimization strategy applies to a large variety
    of thermoelectric materials.'
article_processing_charge: No
article_type: original
author:
- first_name: Tanmoy
  full_name: Ghosh, Tanmoy
  id: a5fc9bc3-feff-11ea-93fe-e8015a3c7e9d
  last_name: Ghosh
- first_name: Subhajit
  full_name: Roychowdhury, Subhajit
  last_name: Roychowdhury
- first_name: Moinak
  full_name: Dutta, Moinak
  last_name: Dutta
- first_name: Kanishka
  full_name: Biswas, Kanishka
  last_name: Biswas
citation:
  ama: 'Ghosh T, Roychowdhury S, Dutta M, Biswas K. High-performance thermoelectric
    energy conversion: A tale of atomic ordering in AgSbTe2. <i>ACS Energy Letters</i>.
    2021;6(8):2825-2837. doi:<a href="https://doi.org/10.1021/acsenergylett.1c01184">10.1021/acsenergylett.1c01184</a>'
  apa: 'Ghosh, T., Roychowdhury, S., Dutta, M., &#38; Biswas, K. (2021). High-performance
    thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2. <i>ACS
    Energy Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/acsenergylett.1c01184">https://doi.org/10.1021/acsenergylett.1c01184</a>'
  chicago: 'Ghosh, Tanmoy, Subhajit Roychowdhury, Moinak Dutta, and Kanishka Biswas.
    “High-Performance Thermoelectric Energy Conversion: A Tale of Atomic Ordering
    in AgSbTe2.” <i>ACS Energy Letters</i>. American Chemical Society, 2021. <a href="https://doi.org/10.1021/acsenergylett.1c01184">https://doi.org/10.1021/acsenergylett.1c01184</a>.'
  ieee: 'T. Ghosh, S. Roychowdhury, M. Dutta, and K. Biswas, “High-performance thermoelectric
    energy conversion: A tale of atomic ordering in AgSbTe2,” <i>ACS Energy Letters</i>,
    vol. 6, no. 8. American Chemical Society, pp. 2825–2837, 2021.'
  ista: 'Ghosh T, Roychowdhury S, Dutta M, Biswas K. 2021. High-performance thermoelectric
    energy conversion: A tale of atomic ordering in AgSbTe2. ACS Energy Letters. 6(8),
    2825–2837.'
  mla: 'Ghosh, Tanmoy, et al. “High-Performance Thermoelectric Energy Conversion:
    A Tale of Atomic Ordering in AgSbTe2.” <i>ACS Energy Letters</i>, vol. 6, no.
    8, American Chemical Society, 2021, pp. 2825–37, doi:<a href="https://doi.org/10.1021/acsenergylett.1c01184">10.1021/acsenergylett.1c01184</a>.'
  short: T. Ghosh, S. Roychowdhury, M. Dutta, K. Biswas, ACS Energy Letters 6 (2021)
    2825–2837.
date_created: 2024-04-03T07:36:10Z
date_published: 2021-07-21T00:00:00Z
date_updated: 2024-04-29T06:56:57Z
day: '21'
department:
- _id: MaIb
doi: 10.1021/acsenergylett.1c01184
intvolume: '         6'
issue: '8'
keyword:
- Materials Chemistry
- Energy Engineering and Power Technology
- Fuel Technology
- Renewable Energy
- Sustainability and the Environment
- Chemistry (miscellaneous)
language:
- iso: eng
month: '07'
oa_version: None
page: 2825-2837
publication: ACS Energy Letters
publication_identifier:
  issn:
  - 2380-8195
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
status: public
title: 'High-performance thermoelectric energy conversion: A tale of atomic ordering
  in AgSbTe2'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2021'
...
---
_id: '15266'
abstract:
- lang: eng
  text: Plant pathogens often exploit a whole range of effectors to facilitate infection.
    The RXLR effector AVR1 produced by the oomycete plant pathogen Phytophthora infestans
    suppresses host defense by targeting Sec5. Sec5 is a subunit of the exocyst, a
    protein complex that is important for mediating polarized exocytosis during plant
    development and defense against pathogens. The mechanism by which AVR1 manipulates
    Sec5 functioning is unknown. In this study, we analyzed the effect of AVR1 on
    Sec5 localization and functioning in the moss Physcomitrium patens. P. patens
    has four Sec5 homologs. Two (PpSec5b and PpSec5d) were found to interact with
    AVR1 in yeast-two-hybrid assays while none of the four showed a positive interaction
    with AVR1ΔT, a truncated version of AVR1. In P. patens lines carrying β-estradiol
    inducible AVR1 or AVR1ΔT transgenes, expression of AVR1 or AVR1ΔT caused defects
    in the development of caulonemal protonema cells and abnormal morphology of chloronema
    cells. Similar phenotypes were observed in Sec5- or Sec6-silenced P. patens lines,
    suggesting that both AVR1 and AVR1ΔT affect exocyst functioning in P. patens.
    With respect to Sec5 localization we found no differences between β-estradiol-treated
    and untreated transgenic AVR1 lines. Sec5 localizes at the plasma membrane in
    growing caulonema cells, also during pathogen attack, and its subcellular localization
    is the same, with or without AVR1 in the vicinity.
article_number: e0249637
article_processing_charge: Yes
article_type: original
author:
- first_name: Elysa J. R.
  full_name: Overdijk, Elysa J. R.
  last_name: Overdijk
- first_name: Vera
  full_name: Putker, Vera
  last_name: Putker
- first_name: Joep
  full_name: Smits, Joep
  last_name: Smits
- first_name: Han
  full_name: Tang, Han
  id: 19BDF720-25A0-11EA-AC6E-928F3DDC885E
  last_name: Tang
  orcid: 0000-0001-6152-6637
- first_name: Klaas
  full_name: Bouwmeester, Klaas
  last_name: Bouwmeester
- first_name: Francine
  full_name: Govers, Francine
  last_name: Govers
- first_name: Tijs
  full_name: Ketelaar, Tijs
  last_name: Ketelaar
citation:
  ama: Overdijk EJR, Putker V, Smits J, et al. Phytophthora infestans RXLR effector
    AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization.
    <i>PLoS One</i>. 2021;16(4). doi:<a href="https://doi.org/10.1371/journal.pone.0249637">10.1371/journal.pone.0249637</a>
  apa: Overdijk, E. J. R., Putker, V., Smits, J., Tang, H., Bouwmeester, K., Govers,
    F., &#38; Ketelaar, T. (2021). Phytophthora infestans RXLR effector AVR1 disturbs
    the growth of Physcomitrium patens without affecting Sec5 localization. <i>PLoS
    One</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0249637">https://doi.org/10.1371/journal.pone.0249637</a>
  chicago: Overdijk, Elysa J. R., Vera Putker, Joep Smits, Han Tang, Klaas Bouwmeester,
    Francine Govers, and Tijs Ketelaar. “Phytophthora Infestans RXLR Effector AVR1
    Disturbs the Growth of Physcomitrium Patens without Affecting Sec5 Localization.”
    <i>PLoS One</i>. Public Library of Science, 2021. <a href="https://doi.org/10.1371/journal.pone.0249637">https://doi.org/10.1371/journal.pone.0249637</a>.
  ieee: E. J. R. Overdijk <i>et al.</i>, “Phytophthora infestans RXLR effector AVR1
    disturbs the growth of Physcomitrium patens without affecting Sec5 localization,”
    <i>PLoS One</i>, vol. 16, no. 4. Public Library of Science, 2021.
  ista: Overdijk EJR, Putker V, Smits J, Tang H, Bouwmeester K, Govers F, Ketelaar
    T. 2021. Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium
    patens without affecting Sec5 localization. PLoS One. 16(4), e0249637.
  mla: Overdijk, Elysa J. R., et al. “Phytophthora Infestans RXLR Effector AVR1 Disturbs
    the Growth of Physcomitrium Patens without Affecting Sec5 Localization.” <i>PLoS
    One</i>, vol. 16, no. 4, e0249637, Public Library of Science, 2021, doi:<a href="https://doi.org/10.1371/journal.pone.0249637">10.1371/journal.pone.0249637</a>.
  short: E.J.R. Overdijk, V. Putker, J. Smits, H. Tang, K. Bouwmeester, F. Govers,
    T. Ketelaar, PLoS One 16 (2021).
date_created: 2024-04-03T07:38:14Z
date_published: 2021-04-08T00:00:00Z
date_updated: 2024-04-29T06:53:15Z
day: '08'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1371/journal.pone.0249637
external_id:
  pmid:
  - '33831039'
file:
- access_level: open_access
  checksum: 25b7b329435af57db2c95571a8ef32fe
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-29T06:51:59Z
  date_updated: 2024-04-29T06:51:59Z
  file_id: '15349'
  file_name: 2021_PlosOne_Overdijk.pdf
  file_size: 4738995
  relation: main_file
  success: 1
file_date_updated: 2024-04-29T06:51:59Z
has_accepted_license: '1'
intvolume: '        16'
issue: '4'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLoS One
publication_identifier:
  issn:
  - 1932-6203
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
status: public
title: Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium
  patens without affecting Sec5 localization
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2021'
...
---
_id: '15269'
abstract:
- lang: eng
  text: We study different aspects of quantum field theory at finite density using
    methods from quantum information theory. For simplicity we focus on massive Dirac
    fermions with nonzero chemical potential, and work in 1 + 1 space-time dimensions.
    Using the entanglement entropy on an interval, we construct an entropic <jats:italic>c</jats:italic>-function
    that is finite. Unlike what happens in Lorentz-invariant theories, this <jats:italic>c</jats:italic>-function
    exhibits a strong violation of monotonicity; it also encodes the creation of long-range
    entanglement from the Fermi surface. Motivated by previous works on lattice models,
    we next calculate numerically the Renyi entropies and find Friedel-type oscillations;
    these are understood in terms of a defect operator product expansion. Furthermore,
    we consider the mutual information as a measure of correlation functions between
    different regions. Using a long-distance expansion previously developed by Cardy,
    we argue that the mutual information detects Fermi surface correlations already
    at leading order in the expansion. We also analyze the relative entropy and its
    Renyi generalizations in order to distinguish states with different charge and/or
    mass. In particular, we show that states in different superselection sectors give
    rise to a super-extensive behavior in the relative entropy. Finally, we discuss
    possible extensions to interacting theories, and argue for the relevance of some
    of these measures for probing non-Fermi liquids.
acknowledgement: "We thank H. Casini for many interesting discussions and comments
  on the manuscript.\r\nLD is supported by CNEA and UNCuyo, Inst. Balseiro. RM is
  supported by IST Austria.\r\nMS is supported by CONICET and UNCuyo, Inst. Balseiro.
  GT is supported by CONICET\r\n(PIP grant 11220150100299), ANPCyT (PICT 2018-2517),
  CNEA, and UNCuyo,\r\nInst. Balseiro."
article_number: '79'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Lucas
  full_name: Daguerre, Lucas
  last_name: Daguerre
- first_name: Raimel A
  full_name: Medina Ramos, Raimel A
  id: CE680B90-D85A-11E9-B684-C920E6697425
  last_name: Medina Ramos
  orcid: 0000-0002-5383-2869
- first_name: Mario
  full_name: Solís, Mario
  last_name: Solís
- first_name: Gonzalo
  full_name: Torroba, Gonzalo
  last_name: Torroba
citation:
  ama: Daguerre L, Medina Ramos RA, Solís M, Torroba G. Aspects of quantum information
    in finite density field theory. <i>Journal of High Energy Physics</i>. 2021;2021(3).
    doi:<a href="https://doi.org/10.1007/jhep03(2021)079">10.1007/jhep03(2021)079</a>
  apa: Daguerre, L., Medina Ramos, R. A., Solís, M., &#38; Torroba, G. (2021). Aspects
    of quantum information in finite density field theory. <i>Journal of High Energy
    Physics</i>. Springer Nature. <a href="https://doi.org/10.1007/jhep03(2021)079">https://doi.org/10.1007/jhep03(2021)079</a>
  chicago: Daguerre, Lucas, Raimel A Medina Ramos, Mario Solís, and Gonzalo Torroba.
    “Aspects of Quantum Information in Finite Density Field Theory.” <i>Journal of
    High Energy Physics</i>. Springer Nature, 2021. <a href="https://doi.org/10.1007/jhep03(2021)079">https://doi.org/10.1007/jhep03(2021)079</a>.
  ieee: L. Daguerre, R. A. Medina Ramos, M. Solís, and G. Torroba, “Aspects of quantum
    information in finite density field theory,” <i>Journal of High Energy Physics</i>,
    vol. 2021, no. 3. Springer Nature, 2021.
  ista: Daguerre L, Medina Ramos RA, Solís M, Torroba G. 2021. Aspects of quantum
    information in finite density field theory. Journal of High Energy Physics. 2021(3),
    79.
  mla: Daguerre, Lucas, et al. “Aspects of Quantum Information in Finite Density Field
    Theory.” <i>Journal of High Energy Physics</i>, vol. 2021, no. 3, 79, Springer
    Nature, 2021, doi:<a href="https://doi.org/10.1007/jhep03(2021)079">10.1007/jhep03(2021)079</a>.
  short: L. Daguerre, R.A. Medina Ramos, M. Solís, G. Torroba, Journal of High Energy
    Physics 2021 (2021).
corr_author: '1'
date_created: 2024-04-03T07:51:06Z
date_published: 2021-03-08T00:00:00Z
date_updated: 2025-09-10T10:15:02Z
day: '08'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1007/jhep03(2021)079
external_id:
  arxiv:
  - '2011.01252'
  isi:
  - '000627376600004'
file:
- access_level: open_access
  checksum: 4f540e63988ee87173e02f51a19a6672
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-10T09:18:38Z
  date_updated: 2024-04-10T09:18:38Z
  file_id: '15310'
  file_name: 2021_JourHighEnergyPhysics_Daguerre.pdf
  file_size: 5389195
  relation: main_file
  success: 1
file_date_updated: 2024-04-10T09:18:38Z
has_accepted_license: '1'
intvolume: '      2021'
isi: 1
issue: '3'
keyword:
- Nuclear and High Energy Physics
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Journal of High Energy Physics
publication_identifier:
  issn:
  - 1029-8479
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Aspects of quantum information in finite density field theory
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 2021
year: '2021'
...
---
_id: '15270'
abstract:
- lang: eng
  text: Various toxic compounds disrupt bacterial physiology. While bacteria harbor
    defense mechanisms to mitigate the toxicity, these mechanisms are often coupled
    to the physiological state of the cells and become ineffective when the physiology
    is severely disrupted.
article_number: '676'
article_processing_charge: Yes
article_type: original
author:
- first_name: Dai
  full_name: Le, Dai
  last_name: Le
- first_name: Ekaterina
  full_name: Krasnopeeva, Ekaterina
  id: 1F1EE44A-BF83-11EA-B3C1-BB9CC619BF3A
  last_name: Krasnopeeva
- first_name: Faris
  full_name: Sinjab, Faris
  last_name: Sinjab
- first_name: Teuta
  full_name: Pilizota, Teuta
  last_name: Pilizota
- first_name: Minsu
  full_name: Kim, Minsu
  last_name: Kim
citation:
  ama: Le D, Krasnopeeva E, Sinjab F, Pilizota T, Kim M. Active efflux leads to heterogeneous
    dissipation of proton motive force by protonophores in bacteria. <i>mBio</i>.
    2021;12(4). doi:<a href="https://doi.org/10.1128/mbio.00676-21">10.1128/mbio.00676-21</a>
  apa: Le, D., Krasnopeeva, E., Sinjab, F., Pilizota, T., &#38; Kim, M. (2021). Active
    efflux leads to heterogeneous dissipation of proton motive force by protonophores
    in bacteria. <i>MBio</i>. American Society for Microbiology. <a href="https://doi.org/10.1128/mbio.00676-21">https://doi.org/10.1128/mbio.00676-21</a>
  chicago: Le, Dai, Ekaterina Krasnopeeva, Faris Sinjab, Teuta Pilizota, and Minsu
    Kim. “Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force
    by Protonophores in Bacteria.” <i>MBio</i>. American Society for Microbiology,
    2021. <a href="https://doi.org/10.1128/mbio.00676-21">https://doi.org/10.1128/mbio.00676-21</a>.
  ieee: D. Le, E. Krasnopeeva, F. Sinjab, T. Pilizota, and M. Kim, “Active efflux
    leads to heterogeneous dissipation of proton motive force by protonophores in
    bacteria,” <i>mBio</i>, vol. 12, no. 4. American Society for Microbiology, 2021.
  ista: Le D, Krasnopeeva E, Sinjab F, Pilizota T, Kim M. 2021. Active efflux leads
    to heterogeneous dissipation of proton motive force by protonophores in bacteria.
    mBio. 12(4), 676.
  mla: Le, Dai, et al. “Active Efflux Leads to Heterogeneous Dissipation of Proton
    Motive Force by Protonophores in Bacteria.” <i>MBio</i>, vol. 12, no. 4, 676,
    American Society for Microbiology, 2021, doi:<a href="https://doi.org/10.1128/mbio.00676-21">10.1128/mbio.00676-21</a>.
  short: D. Le, E. Krasnopeeva, F. Sinjab, T. Pilizota, M. Kim, MBio 12 (2021).
date_created: 2024-04-03T07:51:57Z
date_published: 2021-08-31T00:00:00Z
date_updated: 2024-04-10T09:13:59Z
day: '31'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.1128/mbio.00676-21
external_id:
  pmid:
  - '34253054'
file:
- access_level: open_access
  checksum: 529e3f97ae5c5f5cc743c4fc130c9440
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-10T09:05:49Z
  date_updated: 2024-04-10T09:05:49Z
  file_id: '15309'
  file_name: 2021_mBio_Le.pdf
  file_size: 1344204
  relation: main_file
  success: 1
file_date_updated: 2024-04-10T09:05:49Z
has_accepted_license: '1'
intvolume: '        12'
issue: '4'
keyword:
- Virology
- Microbiology
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: mBio
publication_identifier:
  issn:
  - 2150-7511
publication_status: published
publisher: American Society for Microbiology
quality_controlled: '1'
status: public
title: Active efflux leads to heterogeneous dissipation of proton motive force by
  protonophores in bacteria
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2021'
...
---
_id: '15271'
abstract:
- lang: eng
  text: 'We settle the complexity of the (∆ + 1)-coloring and (∆ + 1)-list coloring
    problems intheCONGESTED CLIQUEmodel by presenting a simpledeterministicalgorithm
    for both problemsrunning in a constant number of rounds.  This matches the complexity
    of the recent breakthroughrandomizedconstant-round (∆ + 1)-list coloring algorithm
    due to Chang et al.  [Proceedings of the38th  ACM  Symposium  on  Principles  of  Distributed  Computing,  2019]  and  significantly  improvesupon
    the state-of-the-artO(log ∆)-round deterministic (∆ + 1)-coloring bound of Parter
    [Proceed-ings of the 45th Annual International Colloquium on Automata, Languages
    and Programming].  Aremarkable property of our algorithm is its simplicity.  Whereas
    the state-of-the-artrandomizedal-gorithms for this problem are based on the quite
    involved local coloring algorithm of Chang, Li, andPettie [Proceedings of the
    50th Annual ACM SIGACT Symposium on Theory of Computing, 2018],our algorithm can
    be described in just a few lines.  At a high level, it applies a careful derandomiza-tion
    of a recursive procedure which partitions the nodes and their respective palettes
    into separatebins.  We show that afterO(1) recursion steps, the remaining uncolored
    subgraph within each bin haslinear size and thus can be solved locally by collecting
    it to a single node.  This algorithm can alsobe implemented in the massively parallel
    computation (MPC) model provided that each machine haslinear (inn, the number
    of nodes in the input graph) space.  We also show an extension of our algo-rithm
    to theMPCregime, in which machines havesublinearspace:  we present the first deterministic(∆
    + 1)-list coloring algorithm designed for sublinear-spaceMPC, which runs inO(log
    ∆ + log logn)rounds.'
acknowledgement: The  first  author  was  partially  supported  by  the  Centre  for  Discrete  Mathematics
  and its Applications, by the IBM Faculty Award, and by the EPSRC award EP/N011163/1.  The
  second author was partially supported by the European Union’s Horizon 2020 research
  and innovation program under the Marie Sklodowska-Curie grant agreement 754411.  The
  first and third authors were partially supported by a Weizmann-UK Making Connections
  grant.
article_processing_charge: No
article_type: original
author:
- first_name: Artur
  full_name: Czumaj, Artur
  last_name: Czumaj
- first_name: Peter
  full_name: Davies, Peter
  id: 11396234-BB50-11E9-B24C-90FCE5697425
  last_name: Davies
  orcid: 0000-0002-5646-9524
- first_name: Merav
  full_name: Parter, Merav
  last_name: Parter
citation:
  ama: Czumaj A, Davies P, Parter M. Simple, deterministic, constant-round coloring
    in congested clique and MPC. <i>SIAM Journal on Computing</i>. 2021;50(5):1603-1626.
    doi:<a href="https://doi.org/10.1137/20m1366502">10.1137/20m1366502</a>
  apa: Czumaj, A., Davies, P., &#38; Parter, M. (2021). Simple, deterministic, constant-round
    coloring in congested clique and MPC. <i>SIAM Journal on Computing</i>. Society
    for Industrial and Applied Mathematics. <a href="https://doi.org/10.1137/20m1366502">https://doi.org/10.1137/20m1366502</a>
  chicago: Czumaj, Artur, Peter Davies, and Merav Parter. “Simple, Deterministic,
    Constant-Round Coloring in Congested Clique and MPC.” <i>SIAM Journal on Computing</i>.
    Society for Industrial and Applied Mathematics, 2021. <a href="https://doi.org/10.1137/20m1366502">https://doi.org/10.1137/20m1366502</a>.
  ieee: A. Czumaj, P. Davies, and M. Parter, “Simple, deterministic, constant-round
    coloring in congested clique and MPC,” <i>SIAM Journal on Computing</i>, vol.
    50, no. 5. Society for Industrial and Applied Mathematics, pp. 1603–1626, 2021.
  ista: Czumaj A, Davies P, Parter M. 2021. Simple, deterministic, constant-round
    coloring in congested clique and MPC. SIAM Journal on Computing. 50(5), 1603–1626.
  mla: Czumaj, Artur, et al. “Simple, Deterministic, Constant-Round Coloring in Congested
    Clique and MPC.” <i>SIAM Journal on Computing</i>, vol. 50, no. 5, Society for
    Industrial and Applied Mathematics, 2021, pp. 1603–26, doi:<a href="https://doi.org/10.1137/20m1366502">10.1137/20m1366502</a>.
  short: A. Czumaj, P. Davies, M. Parter, SIAM Journal on Computing 50 (2021) 1603–1626.
date_created: 2024-04-03T07:53:22Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2025-09-10T10:14:11Z
day: '01'
department:
- _id: DaAl
doi: 10.1137/20m1366502
ec_funded: 1
external_id:
  isi:
  - '000713008600004'
intvolume: '        50'
isi: 1
issue: '5'
keyword:
- General Mathematics
- General Computer Science
language:
- iso: eng
month: '01'
oa_version: None
page: 1603-1626
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: SIAM Journal on Computing
publication_identifier:
  eissn:
  - 1095-7111
  issn:
  - 0097-5397
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Simple, deterministic, constant-round coloring in congested clique and MPC
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 50
year: '2021'
...
---
_id: '15272'
abstract:
- lang: eng
  text: The assembly of neuronal circuits involves the migrations of neurons from
    their place of birth to their final location in the nervous system, as well as
    the coordinated growth and patterning of axons and dendrites. In screens for genes
    required for patterning of the nervous system, we identified the <jats:italic>catp-8/P5A-ATPase</jats:italic>
    as an important regulator of neural patterning. P5A-ATPases are part of the P-type
    ATPases, a family of proteins known to serve a conserved function as transporters
    of ions, lipids and polyamines in unicellular eukaryotes, plants, and humans.
    While the function of many P-type ATPases is relatively well understood, the function
    of P5A-ATPases in metazoans remained elusive. We show here, that the <jats:italic>Caenorhabditis
    elegans</jats:italic> ortholog <jats:italic>catp-8/P5A-ATPase</jats:italic> is
    required for defined aspects of nervous system development. Specifically, the
    <jats:italic>catp-8/P5A-ATPase</jats:italic> serves functions in shaping the elaborately
    sculpted dendritic trees of somatosensory PVD neurons. Moreover, <jats:italic>catp-8/P5A-ATPase</jats:italic>
    is required for axonal guidance and repulsion at the midline, as well as embryonic
    and postembryonic neuronal migrations. Interestingly, not all axons at the midline
    require <jats:italic>catp-8/P5A-ATPase</jats:italic>, although the axons run in
    the same fascicles and navigate the same space. Similarly, not all neuronal migrations
    require <jats:italic>catp-8/P5A-ATPase</jats:italic>. A CATP-8/P5A-ATPase reporter
    is localized to the ER in most, if not all, tissues and <jats:italic>catp-8/P5A-ATPase</jats:italic>
    can function both cell-autonomously and non-autonomously to regulate neuronal
    development. Genetic analyses establish that <jats:italic>catp-8/P5A-ATPase</jats:italic>
    can function in multiple pathways, including the Menorin pathway, previously shown
    to control dendritic patterning in PVD, and Wnt signaling, which functions to
    control neuronal migrations. Lastly, we show that <jats:italic>catp-8/P5A-ATPase</jats:italic>
    is required for localizing select transmembrane proteins necessary for dendrite
    morphogenesis. Collectively, our studies suggest that <jats:italic>catp-8/P5A-ATPase</jats:italic>
    serves diverse, yet specific, roles in different genetic pathways and may be involved
    in the regulation or localization of transmembrane and secreted proteins to specific
    subcellular compartments.
article_number: e1009475
article_processing_charge: No
article_type: original
author:
- first_name: Leo T. H.
  full_name: Tang, Leo T. H.
  last_name: Tang
- first_name: Meera
  full_name: Trivedi, Meera
  last_name: Trivedi
- first_name: Jenna
  full_name: Freund, Jenna
  last_name: Freund
- first_name: Christopher J.
  full_name: Salazar, Christopher J.
  last_name: Salazar
- first_name: Maisha
  full_name: Rahman, Maisha
  last_name: Rahman
- first_name: Nelson
  full_name: Ramirez, Nelson
  id: 39831956-E4FE-11E9-85DE-0DC7E5697425
  last_name: Ramirez
- first_name: Garrett
  full_name: Lee, Garrett
  last_name: Lee
- first_name: Yu
  full_name: Wang, Yu
  last_name: Wang
- first_name: Barth D.
  full_name: Grant, Barth D.
  last_name: Grant
- first_name: Hannes E.
  full_name: Bülow, Hannes E.
  last_name: Bülow
citation:
  ama: Tang LTH, Trivedi M, Freund J, et al. The CATP-8/P5A-type ATPase functions
    in multiple pathways during neuronal patterning. <i>PLOS Genetics</i>. 2021;17(7).
    doi:<a href="https://doi.org/10.1371/journal.pgen.1009475">10.1371/journal.pgen.1009475</a>
  apa: Tang, L. T. H., Trivedi, M., Freund, J., Salazar, C. J., Rahman, M., Ramirez,
    N., … Bülow, H. E. (2021). The CATP-8/P5A-type ATPase functions in multiple pathways
    during neuronal patterning. <i>PLOS Genetics</i>. Public Library of Science. <a
    href="https://doi.org/10.1371/journal.pgen.1009475">https://doi.org/10.1371/journal.pgen.1009475</a>
  chicago: Tang, Leo T. H., Meera Trivedi, Jenna Freund, Christopher J. Salazar, Maisha
    Rahman, Nelson Ramirez, Garrett Lee, Yu Wang, Barth D. Grant, and Hannes E. Bülow.
    “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways during Neuronal Patterning.”
    <i>PLOS Genetics</i>. Public Library of Science, 2021. <a href="https://doi.org/10.1371/journal.pgen.1009475">https://doi.org/10.1371/journal.pgen.1009475</a>.
  ieee: L. T. H. Tang <i>et al.</i>, “The CATP-8/P5A-type ATPase functions in multiple
    pathways during neuronal patterning,” <i>PLOS Genetics</i>, vol. 17, no. 7. Public
    Library of Science, 2021.
  ista: Tang LTH, Trivedi M, Freund J, Salazar CJ, Rahman M, Ramirez N, Lee G, Wang
    Y, Grant BD, Bülow HE. 2021. The CATP-8/P5A-type ATPase functions in multiple
    pathways during neuronal patterning. PLOS Genetics. 17(7), e1009475.
  mla: Tang, Leo T. H., et al. “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways
    during Neuronal Patterning.” <i>PLOS Genetics</i>, vol. 17, no. 7, e1009475, Public
    Library of Science, 2021, doi:<a href="https://doi.org/10.1371/journal.pgen.1009475">10.1371/journal.pgen.1009475</a>.
  short: L.T.H. Tang, M. Trivedi, J. Freund, C.J. Salazar, M. Rahman, N. Ramirez,
    G. Lee, Y. Wang, B.D. Grant, H.E. Bülow, PLOS Genetics 17 (2021).
date_created: 2024-04-03T07:57:12Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2024-04-10T08:57:16Z
day: '01'
ddc:
- '570'
department:
- _id: MaDe
doi: 10.1371/journal.pgen.1009475
external_id:
  pmid:
  - '34197450'
file:
- access_level: open_access
  checksum: 7352b195e4db6d404f702fe6ad8b55ad
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-10T08:53:43Z
  date_updated: 2024-04-10T08:53:43Z
  file_id: '15308'
  file_name: 2021_PlosGenetics_Tang.pdf
  file_size: 4224934
  relation: main_file
  success: 1
file_date_updated: 2024-04-10T08:53:43Z
has_accepted_license: '1'
intvolume: '        17'
issue: '7'
keyword:
- Cancer Research
- Genetics (clinical)
- Genetics
- Molecular Biology
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLOS Genetics
publication_identifier:
  issn:
  - 1553-7404
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
status: public
title: The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2021'
...
---
_id: '15273'
abstract:
- lang: eng
  text: Synapses of glutamatergic mossy fibers (MFs) onto cerebellar unipolar brush
    cells (UBCs) generate slow excitatory (ON) or inhibitory (OFF) postsynaptic responses
    dependent on the complement of glutamate receptors expressed on the UBC’s large
    dendritic brush. Using mouse brain slice recording and computational modeling
    of synaptic transmission, we found that substantial glutamate is maintained in
    the UBC synaptic cleft, sufficient to modify spontaneous firing in OFF UBCs and
    tonically desensitize AMPARs of ON UBCs. The source of this ambient glutamate
    was spontaneous, spike-independent exocytosis from the MF terminal, and its level
    was dependent on activity of glutamate transporters EAAT1–2. Increasing levels
    of ambient glutamate shifted the polarity of evoked synaptic responses in ON UBCs
    and altered the phase of responses to in vivo-like synaptic activity. Unlike classical
    fast synapses, receptors at the UBC synapse are virtually always exposed to a
    significant level of glutamate, which varies in a graded manner during transmission.
article_number: e63819
article_processing_charge: Yes
article_type: original
author:
- first_name: Timothy S
  full_name: Balmer, Timothy S
  last_name: Balmer
- first_name: Carolina
  full_name: Borges Merjane, Carolina
  id: 4305C450-F248-11E8-B48F-1D18A9856A87
  last_name: Borges Merjane
  orcid: 0000-0003-0005-401X
- first_name: Laurence O
  full_name: Trussell, Laurence O
  last_name: Trussell
citation:
  ama: Balmer TS, Borges Merjane C, Trussell LO. Incomplete removal of extracellular
    glutamate controls synaptic transmission and integration at a cerebellar synapse.
    <i>eLife</i>. 2021;10. doi:<a href="https://doi.org/10.7554/elife.63819">10.7554/elife.63819</a>
  apa: Balmer, T. S., Borges Merjane, C., &#38; Trussell, L. O. (2021). Incomplete
    removal of extracellular glutamate controls synaptic transmission and integration
    at a cerebellar synapse. <i>ELife</i>. eLife Sciences Publications. <a href="https://doi.org/10.7554/elife.63819">https://doi.org/10.7554/elife.63819</a>
  chicago: Balmer, Timothy S, Carolina Borges Merjane, and Laurence O Trussell. “Incomplete
    Removal of Extracellular Glutamate Controls Synaptic Transmission and Integration
    at a Cerebellar Synapse.” <i>ELife</i>. eLife Sciences Publications, 2021. <a
    href="https://doi.org/10.7554/elife.63819">https://doi.org/10.7554/elife.63819</a>.
  ieee: T. S. Balmer, C. Borges Merjane, and L. O. Trussell, “Incomplete removal of
    extracellular glutamate controls synaptic transmission and integration at a cerebellar
    synapse,” <i>eLife</i>, vol. 10. eLife Sciences Publications, 2021.
  ista: Balmer TS, Borges Merjane C, Trussell LO. 2021. Incomplete removal of extracellular
    glutamate controls synaptic transmission and integration at a cerebellar synapse.
    eLife. 10, e63819.
  mla: Balmer, Timothy S., et al. “Incomplete Removal of Extracellular Glutamate Controls
    Synaptic Transmission and Integration at a Cerebellar Synapse.” <i>ELife</i>,
    vol. 10, e63819, eLife Sciences Publications, 2021, doi:<a href="https://doi.org/10.7554/elife.63819">10.7554/elife.63819</a>.
  short: T.S. Balmer, C. Borges Merjane, L.O. Trussell, ELife 10 (2021).
date_created: 2024-04-03T07:58:11Z
date_published: 2021-02-22T00:00:00Z
date_updated: 2024-04-09T11:15:01Z
day: '22'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.7554/elife.63819
external_id:
  pmid:
  - '33616036'
file:
- access_level: open_access
  checksum: bbd4de2e54b7fbc11fba14f59e87fe3f
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-09T11:13:07Z
  date_updated: 2024-04-09T11:13:07Z
  file_id: '15307'
  file_name: 2021_eLife_Balmer.pdf
  file_size: 6997954
  relation: main_file
  success: 1
file_date_updated: 2024-04-09T11:13:07Z
has_accepted_license: '1'
intvolume: '        10'
keyword:
- General Immunology and Microbiology
- General Biochemistry
- Genetics and Molecular Biology
- General Medicine
- General Neuroscience
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: eLife
publication_identifier:
  issn:
  - 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
status: public
title: Incomplete removal of extracellular glutamate controls synaptic transmission
  and integration at a cerebellar synapse
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2021'
...
